@article{lin379698,
title = {Structural analysis of gum arabic side chains from Acacia seyal released by bifidobacterial beta-arabino-oligosaccharide 3-O-beta-l-arabinopyranosyl-alpha-l-arabinofuranosidase},
author = {Sasaki Y, Matsuo A, Hashiguchi M, Fujimura K, Koshino H, Tanaka K, Ito Y, Kitahara K, Ishiwata A, Fujita K.},
journal = {Carbohydrate polymers.},
year = {2025},
}
@article{lin379715,
title = {Gut microbiota and urine metabolomics signature in autism spectrum disorder children from Southern China},
author = {Huang Z, Wei A, Yuan H, Huang S, Chen X, Han Y, Li X.},
journal = {BMC Pediatr},
year = {2025},
}
@article{lin379755,
title = {Miscanthus×giganteus xylooligosaccharides: Purification and fermentation},
author = {Chen MH, Bowman M, Cotta MA, Dien BS, Iten LB, Whitehead TR, Rausch KD, Tumbleson ME, Singh V.},
journal = {Carbohydrate polymers.},
year = {2016},
}
@article{lin379756,
title = {Miscanthus x giganteus xylooligosaccharides: Purification and fermentation},
author = {Chen MH, Bowman M, Cotta MA, Dien BS, Iten LB, Whitehead TR, Raush KD, Tumbleson ME, Singh V.},
journal = {Carbohydrate polymers.},
year = {2016},
}
@article{lin379782,
title = {Effect of fructooligosaccharides and galactooligosaccharides on the folate production of some folate-producing bacteria in media cultures or milk},
author = {Padalino M, Perez-Conesa D, Lopez-Nicolas R, Frontela-Saseta C, Ros-Berruezo G.},
journal = {Int Dairy J},
year = {2012},
doi = {10.1016/j.idairyj.2012.06.006},
}
@article{lin379976,
title = {Bacterial microcompartments and energy metabolism drive gut colonization by Bilophila wadsworthia},
author = {Sayavedra L, Yasir M, Goldson A, Brion A, Le Gall G, Moreno-Gonzalez M, Altera A, Paxhia M, Warren M, Savva G, Turner A, Beraza N, Narbad A.},
journal = {Nat Commun},
year = {2025},
}
@article{lin379996,
title = {Characterization of Fusobacterium nucleatum ATCC 23726 adhesins involved in strain-specific attachment to Porphyromonas gingivalis},
author = {Park J, Shokeen B, Haake S, Lux R.},
journal = {International journal of oral science},
year = {2016},
doi = {10.1038/ijos.2016.27},
}
@article{lin85113,
title = {Species-specific oligonucleotide probes for five Bifidobacterium species detected in human intestinal microflora.},
author = {Yamamoto T, Morotomi M, Tanaka R.},
journal = {Appl Environ Microbiol},
year = {1992},
doi = {10.1128/aem.58.12.4076-4079.1992},
pmid = {1282315}
}
@article{lin380004,
title = {Nucleic acid hybridization studies on Microbacterium, Curtobacterium, Agromyces and related taxa.},
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journal = {J Gen Microbiol},
year = {1982},
doi = {10.1099/00221287-128-8-1697},
pmid = {6183393}
}
@article{lin85112,
title = {Extracellular dextranase activity produced by human oral strains of the genus Bifidobacterium.},
author = {Kaster AG, Brown LR.},
journal = {Infect Immun},
year = {1983},
doi = {10.1128/iai.42.2.716-720.1983},
pmid = {6642650}
}
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title = {Viability and enzymatic activity of bifidobacteria in milk.},
author = {Hughes DB, Hoover DG.},
journal = {J Dairy Sci},
year = {1995},
doi = {10.3168/jds.s0022-0302(95)76634-6},
pmid = {7745146}
}
@article{lin379892,
title = {Digoxigenin-labeled deoxyribonucleic acid probes for the enumeration of bifidobacteria in fecal samples.},
author = {Kaneko T, Kurihara H.},
journal = {J Dairy Sci},
year = {1997},
doi = {10.3168/jds.s0022-0302(97)76054-5},
pmid = {9241587}
}
@article{lin85115,
title = {A new selective medium for Bifidobacterium spp.},
author = {Nebra Y, Blanch AR.},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/aem.65.11.5173-5176.1999},
pmid = {10543841}
}
@article{lin85114,
title = {Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes.},
author = {Schwiertz A, Le Blay G, Blaut M.},
journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.1.375-382.2000},
pmid = {10618251}
}
@article{lin85111,
title = {Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis.},
author = {Satokari RM, Vaughan EE, Akkermans AD, Saarela M, de Vos WM.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.2.504-513.2001},
pmid = {11157210}
}
@article{lin379876,
title = {Molecular microbial analysis of Bifidobacterium isolates from different environments by the species-specific amplified ribosomal DNA restriction analysis (ARDRA).},
author = {Ventura M, Elli M, Reniero R, Zink R.},
journal = {FEMS Microbiol Ecol},
year = {2001},
doi = {10.1111/j.1574-6941.2001.tb00831.x},
pmid = {11451515}
}
@article{lin85109,
title = {Ruminococcin A, a new lantibiotic produced by a Ruminococcus gnavus strain isolated from human feces.},
author = {Dabard J, Bridonneau C, Phillipe C, Anglade P, Molle D, Nardi M, Ladire M, Girardin H, Marcille F, Gomez A, Fons M.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.9.4111-4118.2001},
pmid = {11526013}
}
@article{lin85116,
title = {Identification, detection, and enumeration of human bifidobacterium species by PCR targeting the transaldolase gene.},
author = {Requena T, Burton J, Matsuki T, Munro K, Simon MA, Tanaka R, Watanabe K, Tannock GW.},
journal = {Appl Environ Microbiol},
year = {2002},
doi = {10.1128/aem.68.5.2420-2427.2002},
pmid = {11976117}
}
@article{lin379947,
title = {Nondigestible oligosaccharides enhance bacterial colonization resistance against Clostridium difficile in vitro.},
author = {Hopkins MJ, Macfarlane GT.},
journal = {Appl Environ Microbiol},
year = {2003},
doi = {10.1128/aem.69.4.1920-1927.2003},
pmid = {12676665}
}
@article{lin380016,
title = {Phylogenetic analysis of anaerobic psychrophilic enrichment cultures obtained from a greenland glacier ice core.},
author = {Sheridan PP, Miteva VI, Brenchley JE.},
journal = {Appl Environ Microbiol},
year = {2003},
doi = {10.1128/aem.69.4.2153-2160.2003},
pmid = {12676695}
}
@article{lin379864,
title = {Genus- and species-specific PCR primers for the detection and identification of bifidobacteria.},
author = {Matsuki T, Watanabe K, Tanaka R.},
journal = {Curr Issues Intest Microbiol},
year = {2003},
pmid = {14503690}
}
@article{lin379940,
title = {Quantitative PCR with 16S rRNA-gene-targeted species-specific primers for analysis of human intestinal bifidobacteria.},
author = {Matsuki T, Watanabe K, Fujimoto J, Kado Y, Takada T, Matsumoto K, Tanaka R.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.1.167-173.2004},
pmid = {14711639}
}
@article{lin379911,
title = {Identification and quantitation of mucosal and faecal desulfovibrios using real time polymerase chain reaction.},
author = {Fite A, Macfarlane GT, Cummings JH, Hopkins MJ, Kong SC, Furrie E, Macfarlane S.},
journal = {Gut},
year = {2004},
doi = {10.1136/gut.2003.031245},
pmid = {15016746}
}
@article{lin4885,
title = {Probiotic bifidobacteria protect mice from lethal infection with Shiga toxin-producing Escherichia coli O157:H7.},
author = {Asahara T, Shimizu K, Nomoto K, Hamabata T, Ozawa A, Takeda Y},
journal = {Infect Immun},
year = {2004},
doi = {10.1128/IAI.72.4.2240-2247.2004},
pmid = {15039348}
}
@article{lin85110,
title = {Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny.},
author = {Ventura M, Canchaya C, van Sinderen D, Fitzgerald GF, Zink R.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.5.3110-3121.2004},
pmid = {15128574}
}
@article{lin379942,
title = {Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota.},
author = {Bartosch S, Fite A, Macfarlane GT, McMurdo ME.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.6.3575-3581.2004},
pmid = {15184159}
}
@article{lin379934,
title = {Comparison of compositions and metabolic activities of fecal microbiotas in young adults and in antibiotic-treated and non-antibiotic-treated elderly subjects.},
author = {Woodmansey EJ, McMurdo ME, Macfarlane GT, Macfarlane S.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.10.6113-6122.2004},
pmid = {15466557}
}
@article{lin380023,
title = {Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses.},
author = {Ventura M, Canchaya C, Zink R, Fitzgerald GF, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.10.6197-6209.2004},
pmid = {15466567}
}
@article{lin379987,
title = {Kaistella koreensis gen. nov., sp. nov., a novel member of the Chryseobacterium-Bergeyella-Riemerella branch.},
author = {Kim MK, Im WT, Shin YK, Lim JH, Kim SH, Lee BC, Park MY, Lee KY, Lee ST.},
journal = {Int J Syst Evol Microbiol},
year = {2004},
doi = {10.1099/ijs.0.02998-0},
pmid = {15545478}
}
@article{lin380022,
title = {Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve UCC 2003 and application of the operon in bifidobacterial tracing.},
author = {Ventura M, Zink R, Fitzgerald GF, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.1.487-500.2005},
pmid = {15640225}
}
@article{lin379858,
title = {Analysis of the fecal microbiota of irritable bowel syndrome patients and healthy controls with real-time PCR.},
author = {Malinen E, Rinttila T, Kajander K, Matto J, Kassinen A, Krogius L, Saarela M, Korpela R, Palva A.},
journal = {Am J Gastroenterol},
year = {2005},
doi = {10.1111/j.1572-0241.2005.40312.x},
pmid = {15667495}
}
@article{lin379928,
title = {Quantitative real-time PCR assays to identify and quantify fecal Bifidobacterium species in infants receiving a prebiotic infant formula.},
author = {Haarman M, Knol J.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.5.2318-2324.2005},
pmid = {15870317}
}
@article{lin379851,
title = {Effect of maternal consumption of lactobacillus GG on transfer and establishment of fecal bifidobacterial microbiota in neonates.},
author = {Gueimonde M, Sakata S, Kalliomaki M, Isolauri E, Benno Y, Salminen S.},
journal = {J Pediatr Gastroenterol Nutr},
year = {2006},
doi = {10.1097/01.mpg.0000189346.25172.fd},
pmid = {16456409}
}
@article{lin379828,
title = {Protective role of supplement with foreign Bifidobacterium and Lactobacillus in experimental hepatic ischemia-reperfusion injury.},
author = {Xing HC, Li LJ, Xu KJ, Shen T, Chen YB, Sheng JF, Chen Y, Fu SZ, Chen CL, Wang JG, Yan D, Dai FW, Zheng SS.},
journal = {J Gastroenterol Hepatol},
year = {2006},
doi = {10.1111/j.1440-1746.2006.04306.x},
pmid = {16677148}
}
@article{lin380012,
title = {Usefulness of real time PCR for the differentiation and quantification of 652 and JP2 Actinobacillus actinomycetemcomitans genotypes in dental plaque and saliva.},
author = {Orru G, Marini MF, Ciusa ML, Isola D, Cotti M, Baldoni M, Piras V, Pisano E, Montaldo C.},
journal = {BMC Infect Dis},
year = {2006},
doi = {10.1186/1471-2334-6-98},
pmid = {16772039}
}
@article{lin379842,
title = {Adhesion properties and competitive pathogen exclusion ability of bifidobacteria with acquired acid resistance.},
author = {Collado MC, Gueimonde M, Sanz Y, Salminen S.},
journal = {J Food Prot},
year = {2006},
doi = {10.4315/0362-028x-69.7.1675},
pmid = {16865903}
}
@article{lin380014,
title = {Kinetic analysis of bifidobacterial metabolism reveals a minor role for succinic acid in the regeneration of NAD+ through its growth-associated production.},
author = {Van der Meulen R, Adriany T, Verbrugghe K, De Vuyst L.},
journal = {Appl Environ Microbiol},
year = {2006},
doi = {10.1128/aem.00146-06},
pmid = {16885266}
}
@article{lin379826,
title = {Screening for plasmids among human bifidobacteria species: sequencing and analysis of pBC1 from Bifidobacterium catenulatum L48.},
author = {Alvarez-Martin P, Florez AB, Mayo B.},
journal = {Plasmid},
year = {2007},
doi = {10.1016/j.plasmid.2006.07.004},
pmid = {16930703}
}
@article{lin379932,
title = {Population dynamics of Bifidobacterium species in human feces during raffinose administration monitored by fluorescence in situ hybridization-flow cytometry.},
author = {Dinoto A, Marques TM, Sakamoto K, Fukiya S, Watanabe J, Ito S, Yokota A.},
journal = {Appl Environ Microbiol},
year = {2006},
doi = {10.1128/aem.01777-06},
pmid = {17056700}
}
@article{lin380015,
title = {Reconstructing the mosaic glycolytic pathway of the anaerobic eukaryote Monocercomonoides.},
author = {Liapounova NA, Hampl V, Gordon PM, Sensen CW, Gedamu L, Dacks JB.},
journal = {Eukaryot Cell},
year = {2006},
doi = {10.1128/ec.00258-06},
pmid = {17071828}
}
@article{lin380008,
title = {Inhibitory impact of bifidobacteria on the transfer of beta-lactam resistance among Enterobacteriaceae in the gnotobiotic mouse digestive tract.},
author = {Moubareck C, Lecso M, Pinloche E, Butel MJ, Doucet-Populaire F.},
journal = {Appl Environ Microbiol},
year = {2007},
doi = {10.1128/aem.02001-06},
pmid = {17122392}
}
@article{lin379836,
title = {Quantitative assessment of faecal bifidobacterial populations by real-time PCR using lanthanide probes.},
author = {Gueimonde M, Debor L, Tolkko S, Jokisalo E, Salminen S.},
journal = {J Appl Microbiol},
year = {2007},
doi = {10.1111/j.1365-2672.2006.03145.x},
pmid = {17381755}
}
@article{lin379843,
title = {Differences in the composition of intestinal Bifidobacterium species and the development of allergic diseases in infants in rural Japan.},
author = {Suzuki S, Shimojo N, Tajiri Y, Kumemura M, Kohno Y.},
journal = {Clin Exp Allergy},
year = {2007},
doi = {10.1111/j.1365-2222.2007.02676.x},
pmid = {17430346}
}
@article{lin379831,
title = {Breast milk: a source of bifidobacteria for infant gut development and maturation?},
author = {Gueimonde M, Laitinen K, Salminen S, Isolauri E.},
journal = {Neonatology},
year = {2007},
doi = {10.1159/000100088},
pmid = {17596738}
}
@article{lin379829,
title = {Molecularly assessed shifts of Bifidobacterium ssp. and less diverse microbial communities are characteristic of 5-year-old allergic children.},
author = {Stsepetova J, Sepp E, Julge K, Vaughan E, Mikelsaar M, de Vos WM.},
journal = {FEMS Immunol Med Microbiol},
year = {2007},
doi = {10.1111/j.1574-695x.2007.00306.x},
pmid = {17868362}
}
@article{lin379834,
title = {Induction of acid resistance in Bifidobacterium: a mechanism for improving desirable traits of potentially probiotic strains.},
author = {Collado MC, Sanz Y.},
journal = {J Appl Microbiol},
year = {2007},
doi = {10.1111/j.1365-2672.2007.03342.x},
pmid = {17897220}
}
@article{lin379835,
title = {Selection of phytate-degrading human bifidobacteria and application in whole wheat dough fermentation.},
author = {Palacios MC, Haros M, Rosell CM, Sanz Y.},
journal = {Food Microbiol},
year = {2008},
doi = {10.1016/j.fm.2007.06.001},
pmid = {17993391}
}
@article{lin379917,
title = {Inhibitory activity spectrum of reuterin produced by Lactobacillus reuteri against intestinal bacteria.},
author = {Cleusix V, Lacroix C, Vollenweider S, Duboux M, Le Blay G.},
journal = {BMC Microbiol},
year = {2007},
doi = {10.1186/1471-2180-7-101},
pmid = {17997816}
}
@article{lin379830,
title = {In vitro evaluation of the probiotic properties of human intestinal Bifidobacterium species and selection of new probiotic candidates.},
author = {Delgado S, O'Sullivan E, Fitzgerald G, Mayo B.},
journal = {J Appl Microbiol},
year = {2008},
doi = {10.1111/j.1365-2672.2007.03642.x},
pmid = {18248372}
}
@article{lin379930,
title = {Bifidobacterium bifidum lacto-N-biosidase, a critical enzyme for the degradation of human milk oligosaccharides with a type 1 structure.},
author = {Wada J, Ando T, Kiyohara M, Ashida H, Kitaoka M, Yamaguchi M, Kumagai H, Katayama T, Yamamoto K.},
journal = {Appl Environ Microbiol},
year = {2008},
doi = {10.1128/aem.00149-08},
pmid = {18469123}
}
@article{lin379894,
title = {Improved cloning vectors for bifidobacteria, based on the Bifidobacterium catenulatum pBC1 replicon.},
author = {Alvarez-Martin P, Belen Florez A, Margolles A, del Solar G, Mayo B.},
journal = {Appl Environ Microbiol},
year = {2008},
doi = {10.1128/aem.00074-08},
pmid = {18539807}
}
@article{lin379978,
title = {Surface-bound proteins of Lactobacillus plantarum 423 that contribute to adhesion of Caco-2 cells and their role in competitive exclusion and displacement of Clostridium sporogenes and Enterococcus faecalis.},
author = {Ramiah K, van Reenen CA, Dicks LM.},
journal = {Res Microbiol},
year = {2008},
doi = {10.1016/j.resmic.2008.06.002},
pmid = {18619532}
}
@article{lin379979,
title = {Quantification of folic acid in human feces after administration of Bifidobacterium probiotic strains.},
author = {Strozzi GP, Mogna L.},
journal = {J Clin Gastroenterol},
year = {2008},
doi = {10.1097/mcg.0b013e31818087d8},
pmid = {18685499}
}
@article{lin380007,
title = {In vitro kinetic analysis of fermentation of prebiotic inulin-type fructans by Bifidobacterium species reveals four different phenotypes.},
author = {Falony G, Lazidou K, Verschaeren A, Weckx S, Maes D, De Vuyst L.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.01488-08},
pmid = {19011052}
}
@article{lin379945,
title = {Exploring the diversity of the bifidobacterial population in the human intestinal tract.},
author = {Turroni F, Foroni E, Pizzetti P, Giubellini V, Ribbera A, Merusi P, Cagnasso P, Bizzarri B, de'Angelis GL, Shanahan F, van Sinderen D, Ventura M.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.02216-08},
pmid = {19168652}
}
@article{lin380010,
title = {Coculture fermentations of Bifidobacterium species and Bacteroides thetaiotaomicron reveal a mechanistic insight into the prebiotic effect of inulin-type fructans.},
author = {Falony G, Calmeyn T, Leroy F, De Vuyst L.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.02649-08},
pmid = {19251883}
}
@article{lin379939,
title = {Bile-inducible efflux transporter from Bifidobacterium longum NCC2705, conferring bile resistance.},
author = {Gueimonde M, Garrigues C, van Sinderen D, de los Reyes-Gavilan CG, Margolles A.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.00172-09},
pmid = {19304838}
}
@article{lin379941,
title = {Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04.},
author = {Barrangou R, Briczinski EP, Traeger LL, Loquasto JR, Richards M, Horvath P, Coute-Monvoisin AC, Leyer G, Rendulic S, Steele JL, Broadbent JR, Oberg T, Dudley EG, Schuster S, Romero DA, Roberts RF.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.00155-09},
pmid = {19376856}
}
@article{lin379854,
title = {Interplay between weight loss and gut microbiota composition in overweight adolescents.},
author = {Santacruz A, Marcos A, Warnberg J, Marti A, Martin-Matillas M, Campoy C, Moreno LA, Veiga O, Redondo-Figuero C, Garagorri JM, Azcona C, Delgado M, Garcia-Fuentes M, Collado MC, Sanz Y, EVASYON Study Group.},
journal = {Obesity (Silver Spring)},
year = {2009},
doi = {10.1038/oby.2009.112},
pmid = {19390523}
}
@article{lin85095,
title = {In silico prediction of horizontal gene transfer events in Lactobacillus bulgaricus and Streptococcus thermophilus reveals protocooperation in yogurt manufacturing.},
author = {Liu M, Siezen RJ, Nauta A.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.02898-08},
pmid = {19395564}
}
@article{lin85084,
title = {Geminiviruses: a tale of a plasmid becoming a virus.},
author = {Krupovic M, Ravantti JJ, Bamford DH.},
journal = {BMC Evol Biol},
year = {2009},
doi = {10.1186/1471-2148-9-112},
pmid = {19460138}
}
@article{lin379873,
title = {Lower Bifidobacteria counts in both duodenal mucosa-associated and fecal microbiota in irritable bowel syndrome patients.},
author = {Kerckhoffs AP, Samsom M, van der Rest ME, de Vogel J, Knol J, Ben-Amor K, Akkermans LM.},
journal = {World J Gastroenterol},
year = {2009},
doi = {10.3748/wjg.15.2887},
pmid = {19533811}
}
@article{lin379821,
title = {Specificity and sensitivity evaluation of novel and existing Bacteroidales and Bifidobacteria-specific PCR assays on feces and sewage samples and their application for microbial source tracking in Ireland.},
author = {Dorai-Raj S, O' Grady J, Colleran E.},
journal = {Water Res},
year = {2009},
doi = {10.1016/j.watres.2009.08.050},
pmid = {19783273}
}
@article{lin379899,
title = {Diarrhoea-predominant irritable bowel syndrome distinguishable by 16S rRNA gene phylotype quantification.},
author = {Lyra A, Rinttila T, Nikkila J, Krogius-Kurikka L, Kajander K, Malinen E, Matto J, Makela L, Palva A.},
journal = {World J Gastroenterol},
year = {2009},
doi = {10.3748/wjg.15.5936},
pmid = {20014457}
}
@article{lin379820,
title = {Differentiation of Bifidobacterium species using partial RNA polymerase {beta}-subunit (rpoB) gene sequences.},
author = {Kim BJ, Kim HY, Yun YJ, Kim BJ, Kook YH.},
journal = {Int J Syst Evol Microbiol},
year = {2010},
doi = {10.1099/ijs.0.020339-0},
pmid = {20061504}
}
@article{lin379946,
title = {Characterization of the serpin-encoding gene of Bifidobacterium breve 210B.},
author = {Turroni F, Foroni E, O'Connell Motherway M, Bottacini F, Giubellini V, Zomer A, Ferrarini A, Delledonne M, Zhang Z, van Sinderen D, Ventura M.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.02938-09},
pmid = {20348296}
}
@article{lin379814,
title = {Dissimilarity in the occurrence of Bifidobacteriaceae in vaginal and perianal microbiota in women with bacterial vaginosis.},
author = {Swidsinski A, Dorffel Y, Loening-Baucke V, Mendling W, Schilling J, Patterson JL, Verstraelen H.},
journal = {Anaerobe},
year = {2010},
doi = {10.1016/j.anaerobe.2010.06.011},
pmid = {20620215}
}
@article{lin379914,
title = {Effect of a multispecies probiotic supplement on quantity of irritable bowel syndrome-related intestinal microbial phylotypes.},
author = {Lyra A, Krogius-Kurikka L, Nikkila J, Malinen E, Kajander K, Kurikka K, Korpela R, Palva A.},
journal = {BMC Gastroenterol},
year = {2010},
doi = {10.1186/1471-230x-10-110},
pmid = {20849659}
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@article{lin379883,
title = {Association of symptoms with gastrointestinal microbiota in irritable bowel syndrome.},
author = {Malinen E, Krogius-Kurikka L, Lyra A, Nikkila J, Jaaskelainen A, Rinttila T, Vilpponen-Salmela T, von Wright AJ, Palva A.},
journal = {World J Gastroenterol},
year = {2010},
doi = {10.3748/wjg.v16.i36.4532},
pmid = {20857523}
}
@article{lin380001,
title = {Evaluation of antimicrobial-antibiofilm activity of a hydrogen peroxide decontaminating system used in dental unit water lines.},
author = {Orru G, Del Nero S, Tuveri E, Laura Ciusa M, Pilia F, Erriu M, Orru G, Liciardi M, Piras V, Denotti G.},
journal = {Open Dent J},
year = {2010},
doi = {10.2174/1874210601004010140},
pmid = {21113279}
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@article{lin4884,
title = {Bifidobacterium kashiwanohense sp. nov., isolated from healthy infant faeces.},
author = {Morita H, Nakano A, Onoda H, Toh H, Oshima K, Takami H, Murakami M, Fukuda S, Takizawa T, Kuwahara T, Ohno H, Tanabe S, Hattori M},
journal = {Int J Syst Evol Microbiol},
year = {2010},
doi = {10.1099/ijs.0.024521-0},
pmid = {21148680}
}
@article{lin379819,
title = {Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp. lactis Bi-07.},
author = {Larsen N, Vogensen FK, Gobel R, Michaelsen KF, Abu Al-Soud W, Abu Al-Soud W, Sorensen SJ, Hansen LH, Jakobsen M.},
journal = {FEMS Microbiol Ecol},
year = {2011},
doi = {10.1111/j.1574-6941.2010.01024.x},
pmid = {21204871}
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@article{lin85094,
title = {Oligosaccharide binding proteins from Bifidobacterium longum subsp. infantis reveal a preference for host glycans.},
author = {Garrido D, Kim JH, German JB, Raybould HE, Mills DA.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0017315},
pmid = {21423604}
}
@article{lin379929,
title = {Core gene set as the basis of multilocus sequence analysis of the subclass Actinobacteridae.},
author = {Adekambi T, Butler RW, Hanrahan F, Delcher AL, Drancourt M, Shinnick TM.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0014792},
pmid = {21483493}
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@article{lin85098,
title = {Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.},
author = {Silverio AL, Saier MH.},
journal = {J Membr Biol},
year = {2011},
doi = {10.1007/s00232-011-9364-8},
pmid = {21519847}
}
@article{lin85096,
title = {Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera.},
author = {Lukjancenko O, Ussery DW, Wassenaar TM.},
journal = {Microb Ecol},
year = {2012},
doi = {10.1007/s00248-011-9948-y},
pmid = {22031452}
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@article{lin380011,
title = {Cultured representatives of two major phylogroups of human colonic Faecalibacterium prausnitzii can utilize pectin, uronic acids, and host-derived substrates for growth.},
author = {Lopez-Siles M, Khan TM, Duncan SH, Harmsen HJ, Garcia-Gil LJ, Flint HJ.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.06858-11},
pmid = {22101049}
}
@article{lin85097,
title = {The influence of milk oligosaccharides on microbiota of infants: opportunities for formulas.},
author = {Chichlowski M, German JB, Lebrilla CB, Mills DA.},
journal = {Annu Rev Food Sci Technol},
year = {2011},
doi = {10.1146/annurev-food-022510-133743},
pmid = {22129386}
}
@article{lin85107,
title = {Real-time PCR analysis of the intestinal microbiotas in peritoneal dialysis patients.},
author = {Wang IK, Lai HC, Yu CJ, Liang CC, Chang CT, Kuo HL, Yang YF, Lin CC, Lin HH, Liu YL, Chang YC, Wu YY, Chen CH, Li CY, Chuang FR, Huang CC, Lin CH, Lin HC.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.05605-11},
pmid = {22179250}
}
@article{lin4883,
title = {The potential of bifidobacteria as a source of natural folate.},
author = {D'Aimmo MR, Mattarelli P, Biavati B, Carlsson NG, Andlid T},
journal = {J Appl Microbiol},
year = {2012},
doi = {10.1111/j.1365-2672.2012.05261.x},
pmid = {22335359}
}
@article{lin379966,
title = {Conjugated linoleic and linolenic acid production kinetics by bifidobacteria differ among strains.},
author = {Gorissen L, De Vuyst L, Raes K, De Smet S, Leroy F.},
journal = {Int J Food Microbiol},
year = {2012},
doi = {10.1016/j.ijfoodmicro.2012.02.012},
pmid = {22405353}
}
@article{lin379910,
title = {Effects of probiotics and antibiotics on the intestinal homeostasis in a computer controlled model of the large intestine.},
author = {Rehman A, Heinsen FA, Koenen ME, Venema K, Knecht H, Hellmig S, Schreiber S, Ott SJ.},
journal = {BMC Microbiol},
year = {2012},
doi = {10.1186/1471-2180-12-47},
pmid = {22452835}
}
@article{lin380009,
title = {Lactobacillus equigenerosi strain Le1 invades equine epithelial cells.},
author = {Botha M, Botes M, Loos B, Smith C, Dicks LM.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.00552-12},
pmid = {22504808}
}
@article{lin85106,
title = {Evaluation of impact of exposure of Sudan azo dyes and their metabolites on human intestinal bacteria.},
author = {Pan H, Feng J, He GX, Cerniglia CE, Chen H.},
journal = {Anaerobe},
year = {2012},
doi = {10.1016/j.anaerobe.2012.05.002},
pmid = {22634331}
}
@article{lin379793,
title = {Molecular monitoring of the development of intestinal microbiota in Japanese infants.},
author = {Tsuji H, Oozeer R, Matsuda K, Matsuki T, Ohta T, Nomoto K, Tanaka R, Kawashima M, Kawashima K, Nagata S, Yamashiro Y.},
journal = {Benef Microbes},
year = {2012},
doi = {10.3920/bm2011.0038},
pmid = {22683836}
}
@article{lin379943,
title = {A two-component regulatory system controls autoregulated serpin expression in Bifidobacterium breve UCC2003.},
author = {Alvarez-Martin P, O'Connell Motherway M, Turroni F, Foroni E, Ventura M, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.01776-12},
pmid = {22843530}
}
@article{lin379896,
title = {Exploration of the genomic diversity and core genome of the Bifidobacterium adolescentis phylogenetic group by means of a polyphasic approach.},
author = {Duranti S, Turroni F, Milani C, Foroni E, Bottacini F, Dal Bello F, Ferrarini A, Delledonne M, van Sinderen D, Ventura M.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.02467-12},
pmid = {23064340}
}
@article{lin379789,
title = {The inhibitory effect of polyphenols on human gut microbiota.},
author = {Duda-Chodak A.},
journal = {J Physiol Pharmacol},
year = {2012},
pmid = {23211303}
}
@article{lin379912,
title = {Use of bifidobacterial specific terminal restriction fragment length polymorphisms to complement next generation sequence profiling of infant gut communities.},
author = {Lewis ZT, Bokulich NA, Kalanetra KM, Ruiz-Moyano S, Underwood MA, Mills DA.},
journal = {Anaerobe},
year = {2013},
doi = {10.1016/j.anaerobe.2012.12.005},
pmid = {23261904}
}
@article{lin379944,
title = {Probiotics in the treatment and prevention of allergy in children.},
author = {Savilahti E, Kukkonen K, Kuitunen M.},
journal = {World Allergy Organ J},
year = {2009},
doi = {10.1097/wox.0b013e3181a45ee5},
pmid = {23283013}
}
@article{lin379884,
title = {Isolation of a bifidogenic peptide from the pepsin hydrolysate of bovine lactoferrin.},
author = {Oda H, Wakabayashi H, Yamauchi K, Sato T, Xiao JZ, Abe F, Iwatsuki K.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.03343-12},
pmid = {23315725}
}
@article{lin379786,
title = {Ethnic diversity of gut microbiota: species characterization of Bacteroides fragilis group and genus Bifidobacterium in healthy Belgian adults, and comparison with data from Japanese subjects.},
author = {Ishikawa E, Matsuki T, Kubota H, Makino H, Sakai T, Oishi K, Kushiro A, Fujimoto J, Watanabe K, Watanuki M, Tanaka R.},
journal = {J Biosci Bioeng},
year = {2013},
doi = {10.1016/j.jbiosc.2013.02.010},
pmid = {23522670}
}
@article{lin379961,
title = {Development of an ion-exchange chromatography method for monitoring the degradation of prebiotic arabinoxylan-oligosaccharides in a complex fermentation medium.},
author = {Riviere A, Eeltink S, Pierlot C, Balzarini T, Moens F, Selak M, De Vuyst L.},
journal = {Anal Chem},
year = {2013},
doi = {10.1021/ac400187f},
pmid = {23541153}
}
@article{lin379903,
title = {Fecal excretion of Bifidobacterium infantis 35624 and changes in fecal microbiota after eight weeks of oral supplementation with encapsulated probiotic.},
author = {Charbonneau D, Gibb RD, Quigley EM.},
journal = {Gut Microbes},
year = {2013},
doi = {10.4161/gmic.24196},
pmid = {23549409}
}
@article{lin85089,
title = {Genetic diversity of bile salt hydrolases among human intestinal bifidobacteria.},
author = {Jarocki P, Targonski Z.},
journal = {Curr Microbiol},
year = {2013},
doi = {10.1007/s00284-013-0362-1},
pmid = {23591474}
}
@article{lin379924,
title = {Identification of a new P335 subgroup through molecular analysis of lactococcal phages Q33 and BM13.},
author = {Mahony J, Martel B, Tremblay DM, Neve H, Heller KJ, Moineau S, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.00832-13},
pmid = {23666331}
}
@article{lin85100,
title = {Identification of species belonging to the Bifidobacterium genus by PCR-RFLP analysis of a hsp60 gene fragment.},
author = {Baffoni L, Stenico V, Strahsburger E, Gaggia F, Di Gioia D, Modesto M, Mattarelli P, Biavati B.},
journal = {BMC Microbiol},
year = {2013},
doi = {10.1186/1471-2180-13-149},
pmid = {23815602}
}
@article{lin379927,
title = {Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol.},
author = {Milani C, Hevia A, Foroni E, Duranti S, Turroni F, Lugli GA, Sanchez B, Martin R, Gueimonde M, van Sinderen D, Margolles A, Ventura M.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0068739},
pmid = {23869230}
}
@article{lin379933,
title = {Variation in consumption of human milk oligosaccharides by infant gut-associated strains of Bifidobacterium breve.},
author = {Ruiz-Moyano S, Totten SM, Garrido DA, Smilowitz JT, German JB, Lebrilla CB, Mills DA.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.01843-13},
pmid = {23892749}
}
@article{lin4882,
title = {Bifidobacterium moukalabense sp. nov., isolated from the faeces of wild west lowland gorilla (Gorilla gorilla gorilla).},
author = {Tsuchida S, Takahashi S, Nguema PPM, Fujita S, Kitahara M, Yamagiwa J, Ngomanda A, Ohkuma M, Ushida K},
journal = {Int J Syst Evol Microbiol},
year = {2013},
doi = {10.1099/ijs.0.055186-0},
pmid = {24158945}
}
@article{lin379877,
title = {Mother-to-infant transmission of intestinal bifidobacterial strains has an impact on the early development of vaginally delivered infant's microbiota.},
author = {Makino H, Kushiro A, Ishikawa E, Kubota H, Gawad A, Sakai T, Oishi K, Martin R, Ben-Amor K, Knol J, Tanaka R.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0078331},
pmid = {24244304}
}
@article{lin85086,
title = {Characterization of a novel beta-L-arabinofuranosidase in Bifidobacterium longum: functional elucidation of a DUF1680 protein family member.},
author = {Fujita K, Takashi Y, Obuchi E, Kitahara K, Suganuma T.},
journal = {J Biol Chem},
year = {2014},
doi = {10.1074/jbc.m113.528711},
pmid = {24385433}
}
@article{lin379931,
title = {Establishment of intestinal microbiota during early life: a longitudinal, explorative study of a large cohort of Danish infants.},
author = {Bergstrom A, Skov TH, Bahl MI, Roager HM, Christensen LB, Ejlerskov KT, Molgaard C, Michaelsen KF, Licht TR.},
journal = {Appl Environ Microbiol},
year = {2014},
doi = {10.1128/aem.00342-14},
pmid = {24584251}
}
@article{lin379869,
title = {Disrupted intestinal microbiota and intestinal inflammation in children with cystic fibrosis and its restoration with Lactobacillus GG: a randomised clinical trial.},
author = {Bruzzese E, Callegari ML, Raia V, Viscovo S, Scotto R, Ferrari S, Morelli L, Buccigrossi V, Lo Vecchio A, Ruberto E, Guarino A.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0087796},
pmid = {24586292}
}
@article{lin379922,
title = {Overgrowth of the indigenous gut microbiome and irritable bowel syndrome.},
author = {Bye W, Ishaq N, Bolin TD, Duncombe VM, Riordan SM.},
journal = {World J Gastroenterol},
year = {2014},
doi = {10.3748/wjg.v20.i10.2449},
pmid = {24627582}
}
@article{lin379900,
title = {Autoinducer-2 plays a crucial role in gut colonization and probiotic functionality of Bifidobacterium breve UCC2003.},
author = {Christiaen SE, O'Connell Motherway M, Bottacini F, Lanigan N, Casey PG, Huys G, Nelis HJ, van Sinderen D, Coenye T.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0098111},
pmid = {24871429}
}
@article{lin379999,
title = {Antimicrobial, antibiofilm and cytotoxic activities of Hakea sericea Schrader extracts.},
author = {Luis A, Breitenfeld L, Ferreira S, Duarte AP, Domingues F.},
journal = {Pharmacogn Mag},
year = {2014},
doi = {10.4103/0973-1296.127331},
pmid = {24914310}
}
@article{lin379958,
title = {Bifidobacterium faecale sp. nov., isolated from human faeces.},
author = {Choi JH, Lee KM, Lee MK, Cha CJ, Kim GB.},
journal = {Int J Syst Evol Microbiol},
year = {2014},
doi = {10.1099/ijs.0.063479-0},
pmid = {24944342}
}
@article{lin379908,
title = {Anaerobes and bacterial vaginosis in pregnancy: virulence factors contributing to vaginal colonisation.},
author = {Africa CW, Nel J, Stemmet M.},
journal = {Int J Environ Res Public Health},
year = {2014},
doi = {10.3390/ijerph110706979},
pmid = {25014248}
}
@article{lin379891,
title = {The genome of Bifidobacterium pseudocatenulatum IPLA 36007, a human intestinal strain with isoflavone-activation activity.},
author = {Alegria A, Delgado S, Guadamuro L, Florez AB, Felis GE, Torriani S, Mayo B.},
journal = {Gut Pathog},
year = {2014},
doi = {10.1186/1757-4749-6-31},
pmid = {25097668}
}
@article{lin379971,
title = {Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics.},
author = {Lugli GA, Milani C, Turroni F, Duranti S, Ferrario C, Viappiani A, Mancabelli L, Mangifesta M, Taminiau B, Delcenserie V, van Sinderen D, Ventura M.},
journal = {Appl Environ Microbiol},
year = {2014},
doi = {10.1128/aem.02004-14},
pmid = {25107967}
}
@article{lin85108,
title = {Diversity, ecology and intestinal function of bifidobacteria.},
author = {Bottacini F, Ventura M, van Sinderen D, O'Connell Motherway M.},
journal = {Microb Cell Fact},
year = {2014},
doi = {10.1186/1475-2859-13-s1-s4},
pmid = {25186128}
}
@article{lin379959,
title = {Monoculture parameters successfully predict coculture growth kinetics of Bacteroides thetaiotaomicron and two Bifidobacterium strains.},
author = {Van Wey AS, Cookson AL, Roy NC, McNabb WC, Soboleva TK, Shorten PR.},
journal = {Int J Food Microbiol},
year = {2014},
doi = {10.1016/j.ijfoodmicro.2014.09.006},
pmid = {25282609}
}
@article{lin380006,
title = {Stumps of Eucalyptus globulus as a source of antioxidant and antimicrobial polyphenols.},
author = {Luis A, Neiva D, Pereira H, Gominho J, Domingues F, Duarte AP.},
journal = {Molecules},
year = {2014},
doi = {10.3390/molecules191016428},
pmid = {25314604}
}
@article{lin379926,
title = {Discovery of a conjugative megaplasmid in Bifidobacterium breve.},
author = {Bottacini F, O'Connell Motherway M, Casey E, McDonnell B, Mahony J, Ventura M, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2015},
doi = {10.1128/aem.02871-14},
pmid = {25326305}
}
@article{lin379935,
title = {Cross-feeding by Bifidobacterium breve UCC2003 during co-cultivation with Bifidobacterium bifidum PRL2010 in a mucin-based medium.},
author = {Egan M, Motherway MO, Kilcoyne M, Kane M, Joshi L, Ventura M, van Sinderen D.},
journal = {BMC Microbiol},
year = {2014},
doi = {10.1186/s12866-014-0282-7},
pmid = {25420416}
}
@article{lin380013,
title = {Long-term survival and virulence of Mycobacterium leprae in amoebal cysts.},
author = {Wheat WH, Casali AL, Thomas V, Spencer JS, Lahiri R, Williams DL, McDonnell GE, Gonzalez-Juarrero M, Brennan PJ, Jackson M.},
journal = {PLoS Negl Trop Dis},
year = {2014},
doi = {10.1371/journal.pntd.0003405},
pmid = {25521850}
}
@article{lin379918,
title = {Fecal microbiota composition of breast-fed infants is correlated with human milk oligosaccharides consumed.},
author = {Wang M, Li M, Wu S, Lebrilla CB, Chapkin RS, Ivanov I, Donovan SM.},
journal = {J Pediatr Gastroenterol Nutr},
year = {2015},
doi = {10.1097/mpg.0000000000000752},
pmid = {25651488}
}
@article{lin85101,
title = {Hydrolysis of the rutinose-conjugates flavonoids rutin and hesperidin by the gut microbiota and bifidobacteria.},
author = {Amaretti A, Raimondi S, Leonardi A, Quartieri A, Rossi M.},
journal = {Nutrients},
year = {2015},
doi = {10.3390/nu7042788},
pmid = {25875120}
}
@article{lin380002,
title = {Synthesis of Fructooligosaccharides by IslA4, a truncated inulosucrase from Leuconostoc citreum.},
author = {Pena-Cardena A, Rodriguez-Alegria ME, Olvera C, Munguia AL.},
journal = {BMC Biotechnol},
year = {2015},
doi = {10.1186/s12896-015-0116-1},
pmid = {25887587}
}
@article{lin379768,
title = {Intestinal microbiota and allergic diseases: A systematic review.},
author = {Melli LC, do Carmo-Rodrigues MS, Araujo-Filho HB, Sole D, de Morais MB.},
journal = {Allergol Immunopathol (Madr)},
year = {2016},
doi = {10.1016/j.aller.2015.01.013},
pmid = {25985709}
}
@article{lin4881,
title = {Complete genome sequence of Bifidobacterium catenulatum JCM 1194(T) isolated from human feces.},
author = {Morita H, Toh H, Oshima K, Nakano A, Yamashita N, Iioka E, Arakawa K, Suda W, Honda K, Hattori M},
journal = {J Biotechnol},
year = {2015},
doi = {10.1016/j.jbiotec.2015.06.415},
pmid = {26133930}
}
@article{lin85092,
title = {Occurrence and Diversity of CRISPR-Cas Systems in the Genus Bifidobacterium.},
author = {Briner AE, Lugli GA, Milani C, Duranti S, Turroni F, Gueimonde M, Margolles A, van Sinderen D, Ventura M, Barrangou R.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0133661},
pmid = {26230606}
}
@article{lin379880,
title = {Assessing the antimicrobial activities of Ocins.},
author = {Choyam S, Lokesh D, Kempaiah BB, Kammara R.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.01034},
pmid = {26441952}
}
@article{lin379760,
title = {[THE SPECIES CHARACTERISTIC OF BIFIDOBACTERIA IN INTESTINAL BIOTOPE OF CHILDREN WITH FUNCTIONAL DYSPEPSIA].},
author = {Rakova EB, Nemichenko UM, Popkova SM, Serdyuk LV, Dolgikh VV, Ivanova EI, Savelkaeva MV.},
journal = {Klin Lab Diagn},
year = {2015},
pmid = {26841674}
}
@article{lin379762,
title = {Miscanthus×giganteus xylooligosaccharides: Purification and fermentation.},
author = {Chen MH, Bowman MJ, Cotta MA, Dien BS, Iten LB, Whitehead TR, Rausch KD, Tumbleson ME, Singh V.},
journal = {Carbohydr Polym},
year = {2016},
doi = {10.1016/j.carbpol.2015.12.052},
pmid = {26876832}
}
@article{lin379763,
title = {Antagonistic activities of some Bifidobacterium sp. strains isolated from resident infant gastrointestinal microbiota on Gram-negative enteric pathogens.},
author = {Delcaru C, Alexandru I, Podgoreanu P, Cristea VC, Bleotu C, Chifiriuc MC, Bezirtzoglou E, Lazar V.},
journal = {Anaerobe},
year = {2016},
doi = {10.1016/j.anaerobe.2016.02.010},
pmid = {26921694}
}
@article{lin379902,
title = {Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis.},
author = {Duranti S, Milani C, Lugli GA, Mancabelli L, Turroni F, Ferrario C, Mangifesta M, Viappiani A, Sanchez B, Margolles A, van Sinderen D, Ventura M.},
journal = {Sci Rep},
year = {2016},
doi = {10.1038/srep23971},
pmid = {27035119}
}
@article{lin380021,
title = {Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences.},
author = {Brandt K, Barrangou R.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.00657},
pmid = {27242688}
}
@article{lin379920,
title = {Biochemical Engineering Approaches for Increasing Viability and Functionality of Probiotic Bacteria.},
author = {Nguyen HT, Truong DH, Kouhounde S, Ly S, Razafindralambo H, Delvigne F.},
journal = {Int J Mol Sci},
year = {2016},
doi = {10.3390/ijms17060867},
pmid = {27271598}
}
@article{lin379923,
title = {Early-Life Events, Including Mode of Delivery and Type of Feeding, Siblings and Gender, Shape the Developing Gut Microbiota.},
author = {Martin R, Makino H, Cetinyurek Yavuz A, Ben-Amor K, Roelofs M, Ishikawa E, Kubota H, Swinkels S, Sakai T, Oishi K, Kushiro A, Knol J.},
journal = {PLoS One},
year = {2016},
doi = {10.1371/journal.pone.0158498},
pmid = {27362264}
}
@article{lin379743,
title = {The effect of quercetin on genetic expression of the commensal gut microbes Bifidobacterium catenulatum, Enterococcus caccae and Ruminococcus gauvreauii.},
author = {Firrman J, Liu L, Zhang L, Arango Argoty G, Wang M, Tomasula P, Kobori M, Pontious S, Xiao W.},
journal = {Anaerobe},
year = {2016},
doi = {10.1016/j.anaerobe.2016.10.004},
pmid = {27742572}
}
@article{lin379955,
title = {Lactate- and acetate-based cross-feeding interactions between selected strains of lactobacilli, bifidobacteria and colon bacteria in the presence of inulin-type fructans.},
author = {Moens F, Verce M, De Vuyst L.},
journal = {Int J Food Microbiol},
year = {2017},
doi = {10.1016/j.ijfoodmicro.2016.10.019},
pmid = {27810444}
}
@article{lin379973,
title = {Prevalence of Antibiotic Resistance Genes among Human Gut-Derived Bifidobacteria.},
author = {Duranti S, Lugli GA, Mancabelli L, Turroni F, Milani C, Mangifesta M, Ferrario C, Anzalone R, Viappiani A, van Sinderen D, Ventura M.},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/aem.02894-16},
pmid = {27864179}
}
@article{lin379925,
title = {Impact of short-chain galactooligosaccharides on the gut microbiome of lactose-intolerant individuals.},
author = {Azcarate-Peril MA, Ritter AJ, Savaiano D, Monteagudo-Mera A, Anderson C, Magness ST, Klaenhammer TR.},
journal = {Proc Natl Acad Sci U S A},
year = {2017},
doi = {10.1073/pnas.1606722113},
pmid = {28049818}
}
@article{lin379817,
title = {Carbohydrate Staple Food Modulates Gut Microbiota of Mongolians in China.},
author = {Li J, Hou Q, Zhang J, Xu H, Sun Z, Menghe B, Zhang H.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.00484},
pmid = {28377764}
}
@article{lin379938,
title = {Gut Bacteria Missing in Severe Acute Malnutrition, Can We Identify Potential Probiotics by Culturomics?},
author = {Tidjani Alou M, Million M, Traore SI, Mouelhi D, Khelaifia S, Bachar D, Caputo A, Delerce J, Brah S, Alhousseini D, Sokhna C, Robert C, Diallo BA, Diallo A, Parola P, Golden M, Lagier JC, Raoult D.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.00899},
pmid = {28588566}
}
@article{lin379980,
title = {Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family.},
author = {Lugli GA, Milani C, Turroni F, Duranti S, Mancabelli L, Mangifesta M, Ferrario C, Modesto M, Mattarelli P, Jiri K, van Sinderen D, Ventura M.},
journal = {BMC Genomics},
year = {2017},
doi = {10.1186/s12864-017-3955-4},
pmid = {28764658}
}
@article{lin379838,
title = {Apigenin Impacts the Growth of the Gut Microbiota and Alters the Gene Expression of Enterococcus.},
author = {Wang M, Firrman J, Zhang L, Arango-Argoty G, Tomasula P, Liu L, Xiao W, Yam K.},
journal = {Molecules},
year = {2017},
doi = {10.3390/molecules22081292},
pmid = {28771188}
}
@article{lin379811,
title = {Bifidobacterium pseudocatenulatum LI09 and Bifidobacterium catenulatum LI10 attenuate D-galactosamine-induced liver injury by modifying the gut microbiota.},
author = {Fang D, Shi D, Lv L, Gu S, Wu W, Chen Y, Guo J, Li A, Hu X, Guo F, Ye J, Li Y, Li L.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/s41598-017-09395-8},
pmid = {28821814}
}
@article{lin379998,
title = {Chemical Profiling and Evaluation of Antioxidant and Anti-Microbial Properties of Selected Commercial Essential Oils: A Comparative Study.},
author = {Luis A, Duarte AP, Pereira L, Domingues F.},
journal = {Medicines (Basel)},
year = {2017},
doi = {10.3390/medicines4020036},
pmid = {28930251}
}
@article{lin379878,
title = {Variation of Carbohydrate-Active Enzyme Patterns in the Gut Microbiota of Italian Healthy Subjects and Type 2 Diabetes Patients.},
author = {Soverini M, Turroni S, Biagi E, Quercia S, Brigidi P, Candela M, Rampelli S.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.02079},
pmid = {29114246}
}
@article{lin379866,
title = {Extension of the viral ecology in humans using viral profile hidden Markov models.},
author = {Bzhalava Z, Hultin E, Dillner J.},
journal = {PLoS One},
year = {2018},
doi = {10.1371/journal.pone.0190938},
pmid = {29351302}
}
@article{lin85103,
title = {In Vitro and In Vivo Activities of DS-2969b, a Novel GyrB Inhibitor, against Clostridium difficile.},
author = {Mathur T, Barman TK, Kumar M, Singh D, Kumar R, Khera MK, Yamada M, Inoue SI, Upadhyay DJ, Masuda N.},
journal = {Antimicrob Agents Chemother},
year = {2018},
doi = {10.1128/aac.02157-17},
pmid = {29439962}
}
@article{lin380003,
title = {Administration of bifidobacterium and lactobacillus strains modulates experimental myasthenia gravis and experimental encephalomyelitis in Lewis rats.},
author = {Consonni A, Cordiglieri C, Rinaldi E, Marolda R, Ravanelli I, Guidesi E, Elli M, Mantegazza R, Baggi F.},
journal = {Oncotarget},
year = {2018},
doi = {10.18632/oncotarget.25170},
pmid = {29854277}
}
@article{lin379904,
title = {The comparative genomics of Bifidobacterium callitrichos reflects dietary carbohydrate utilization within the common marmoset gut.},
author = {Albert K, Rani A, Sela DA.},
journal = {Microb Genom},
year = {2018},
doi = {10.1099/mgen.0.000183},
pmid = {29906260}
}
@article{lin379774,
title = {Analysis of Temporal Changes in Growth and Gene Expression for Commensal Gut Microbes in Response to the Polyphenol Naringenin.},
author = {Firrman J, Liu L, Argoty GA, Zhang L, Tomasula P, Wang M, Pontious S, Kobori M, Xiao W.},
journal = {Microbiol Insights},
year = {2018},
doi = {10.1177/1178636118775100},
pmid = {30013359}
}
@article{lin379948,
title = {Genome-Based Taxonomic Classification of the Phylum Actinobacteria.},
author = {Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.02007},
pmid = {30186281}
}
@article{lin379775,
title = {Construction of a Bioluminescent Labelling Plasmid Vector for Bifidobacteria.},
author = {Moon GS, Narbad A.},
journal = {Korean J Food Sci Anim Resour},
year = {2018},
doi = {10.5851/kosfa.2018.e17},
pmid = {30206440}
}
@article{lin85091,
title = {A reverse metabolic approach to weaning: in silico identification of immune-beneficial infant gut bacteria, mining their metabolism for prebiotic feeds and sourcing these feeds in the natural product space.},
author = {Michelini S, Balakrishnan B, Parolo S, Matone A, Mullaney JA, Young W, Gasser O, Wall C, Priami C, Lombardo R, Kussmann M.},
journal = {Microbiome},
year = {2018},
doi = {10.1186/s40168-018-0545-x},
pmid = {30241567}
}
@article{lin379825,
title = {Microbiota profile in new-onset pediatric Crohn's disease: data from a non-Western population.},
author = {El Mouzan MI, Winter HS, Assiri AA, Korolev KS, Al Sarkhy AA, Dowd SE, Al Mofarreh MA, Menon R.},
journal = {Gut Pathog},
year = {2018},
doi = {10.1186/s13099-018-0276-3},
pmid = {30519287}
}
@article{lin379868,
title = {Long-term colonization exceeding six years from early infancy of Bifidobacterium longum subsp. longum in human gut.},
author = {Oki K, Akiyama T, Matsuda K, Gawad A, Makino H, Ishikawa E, Oishi K, Kushiro A, Fujimoto J.},
journal = {BMC Microbiol},
year = {2018},
doi = {10.1186/s12866-018-1358-6},
pmid = {30541439}
}
@article{lin379796,
title = {Oral Candida administration in a Clostridium difficile mouse model worsens disease severity but is attenuated by Bifidobacterium.},
author = {Panpetch W, Somboonna N, Palasuk M, Hiengrach P, Finkelman M, Tumwasorn S, Leelahavanichkul A.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0210798},
pmid = {30645630}
}
@article{lin379879,
title = {Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers.},
author = {Baxter NT, Schmidt AW, Venkataraman A, Kim KS, Waldron C, Schmidt TM.},
journal = {mBio},
year = {2019},
doi = {10.1128/mbio.02566-18},
pmid = {30696735}
}
@article{lin379997,
title = {Lactobacillus reuteri Reduces the Severity of Experimental Autoimmune Encephalomyelitis in Mice by Modulating Gut Microbiota.},
author = {He B, Hoang TK, Tian X, Taylor CM, Blanchard E, Luo M, Bhattacharjee MB, Freeborn J, Park S, Couturier J, Lindsey JW, Tran DQ, Rhoads JM, Liu Y.},
journal = {Front Immunol},
year = {2019},
doi = {10.3389/fimmu.2019.00385},
pmid = {30899262}
}
@article{lin379888,
title = {Gut microbiome meta-analysis reveals dysbiosis is independent of body mass index in predicting risk of obesity-associated CRC.},
author = {Greathouse KL, White JR, Padgett RN, Perrotta BG, Jenkins GD, Chia N, Chen J.},
journal = {BMJ Open Gastroenterol},
year = {2019},
doi = {10.1136/bmjgast-2018-000247},
pmid = {30899534}
}
@article{lin379954,
title = {Lactobacillus zhachilii sp. nov., a lactic acid bacterium isolated from Zha-Chili.},
author = {Zhang Z, Hou Q, Wang Y, Li W, Zhao H, Sun Z, Guo Z.},
journal = {Int J Syst Evol Microbiol},
year = {2019},
doi = {10.1099/ijsem.0.003362},
pmid = {30900972}
}
@article{lin379937,
title = {Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.},
author = {Thomas AM, Manghi P, Asnicar F, Pasolli E, Armanini F, Zolfo M, Beghini F, Manara S, Karcher N, Pozzi C, Gandini S, Serrano D, Tarallo S, Francavilla A, Gallo G, Trompetto M, Ferrero G, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Wirbel J, Schrotz-King P, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G, Cordero F, Dias-Neto E, Setubal JC, Tett A, Pardini B, Rescigno M, Waldron L, Naccarati A, Segata N.},
journal = {Nat Med},
year = {2019},
doi = {10.1038/s41591-019-0405-7},
pmid = {30936548}
}
@article{lin379905,
title = {Ability of bifidobacteria to metabolize chitin-glucan and its impact on the gut microbiota.},
author = {Alessandri G, Milani C, Duranti S, Mancabelli L, Ranjanoro T, Modica S, Carnevali L, Statello R, Bottacini F, Turroni F, Ossiprandi MC, Sgoifo A, van Sinderen D, Ventura M.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-42257-z},
pmid = {30962486}
}
@article{lin85087,
title = {Genomic Analyses of Bifidobacterium moukalabense Reveal Adaptations to Frugivore/Folivore Feeding Behavior.},
author = {Segawa T, Fukuchi S, Bodington D, Tsuchida S, Mbehang Nguema PP, Mori H, Ushida K.},
journal = {Microorganisms},
year = {2019},
doi = {10.3390/microorganisms7040099},
pmid = {30987363}
}
@article{lin379909,
title = {A Multi-omics Approach to Unraveling the Microbiome-Mediated Effects of Arabinoxylan Oligosaccharides in Overweight Humans.},
author = {Benitez-Paez A, Kjolbaek L, Gomez Del Pulgar EM, Brahe LK, Astrup A, Matysik S, Schott HF, Krautbauer S, Liebisch G, Boberska J, Claus S, Rampelli S, Brigidi P, Larsen LH, Sanz Y.},
journal = {mSystems},
year = {2019},
doi = {10.1128/msystems.00209-19},
pmid = {31138673}
}
@article{lin379901,
title = {Mechanisms by which sialylated milk oligosaccharides impact bone biology in a gnotobiotic mouse model of infant undernutrition.},
author = {Cowardin CA, Ahern PP, Kung VL, Hibberd MC, Cheng J, Guruge JL, Sundaresan V, Head RD, Barile D, Mills DA, Barratt MJ, Huq S, Ahmed T, Gordon JI.},
journal = {Proc Natl Acad Sci U S A},
year = {2019},
doi = {10.1073/pnas.1821770116},
pmid = {31138692}
}
@article{lin379881,
title = {Paediatricians play a key role in preventing early harmful events that could permanently influence the development of the gut microbiota in childhood.},
author = {Goulet O, Hojsak I, Kolacek S, Pop TL, Cokugras FC, Zuccotti G, Pettoello-Mantovani M, Fabiano V.},
journal = {Acta Paediatr},
year = {2019},
doi = {10.1111/apa.14900},
pmid = {31197890}
}
@article{lin379795,
title = {Gut microbiome pattern in adolescents with functional gastrointestinal disease.},
author = {Nafarin AR, Hegar B, Sjakti HA, Vandenplas Y.},
journal = {Int J Pediatr Adolesc Med},
year = {2019},
doi = {10.1016/j.ijpam.2019.01.005},
pmid = {31304222}
}
@article{lin379875,
title = {Fecal Microbiotas of Indonesian and New Zealand Children Differ in Complexity and Bifidobacterial Taxa during the First Year of Life.},
author = {Lawley B, Otal A, Moloney-Geany K, Diana A, Houghton L, Heath AM, Taylor RW, Tannock GW.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.01105-19},
pmid = {31375480}
}
@article{lin379991,
title = {Production of Hydrophobic Zein-Based Films Bioinspired by The Lotus Leaf Surface: Characterization and Bioactive Properties.},
author = {Luis A, Domingues F, Ramos A.},
journal = {Microorganisms},
year = {2019},
doi = {10.3390/microorganisms7080267},
pmid = {31426406}
}
@article{lin379906,
title = {Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples.},
author = {Tarallo S, Ferrero G, Gallo G, Francavilla A, Clerico G, Realis Luc A, Manghi P, Thomas AM, Vineis P, Segata N, Pardini B, Naccarati A, Cordero F.},
journal = {mSystems},
year = {2019},
doi = {10.1128/msystems.00289-19},
pmid = {31530647}
}
@article{lin379994,
title = {DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq.},
author = {Krych L, Castro-Mejia JL, Forero-Junco LM, Moesby DN, Mikkelsen MB, Rasmussen MA, Sykulski M, Nielsen DS.},
journal = {Commun Biol},
year = {2019},
doi = {10.1038/s42003-019-0617-x},
pmid = {31633060}
}
@article{lin379890,
title = {Prebiotic UG1601 mitigates constipation-related events in association with gut microbiota: A randomized placebo-controlled intervention study.},
author = {Chu JR, Kang SY, Kim SE, Lee SJ, Lee YC, Sung MK.},
journal = {World J Gastroenterol},
year = {2019},
doi = {10.3748/wjg.v25.i40.6129},
pmid = {31686768}
}
@article{lin379982,
title = {Mobilome and Resistome Reconstruction from Genomes Belonging to Members of the Bifidobacterium Genus.},
author = {Mancino W, Lugli GA, Sinderen DV, Ventura M, Turroni F.},
journal = {Microorganisms},
year = {2019},
doi = {10.3390/microorganisms7120638},
pmid = {31810287}
}
@article{lin379919,
title = {Varied Pathways of Infant Gut-Associated Bifidobacterium to Assimilate Human Milk Oligosaccharides: Prevalence of the Gene Set and Its Correlation with Bifidobacteria-Rich Microbiota Formation.},
author = {Sakanaka M, Gotoh A, Yoshida K, Odamaki T, Koguchi H, Xiao JZ, Kitaoka M, Katayama T.},
journal = {Nutrients},
year = {2019},
doi = {10.3390/nu12010071},
pmid = {31888048}
}
@article{lin380000,
title = {Therapeutic Effect of Bifidobacterium Administration on Experimental Autoimmune Myasthenia Gravis in Lewis Rats.},
author = {Rinaldi E, Consonni A, Cordiglieri C, Sacco G, Crasa C, Fontana A, Morelli L, Elli M, Mantegazza R, Baggi F.},
journal = {Front Immunol},
year = {2019},
doi = {10.3389/fimmu.2019.02949},
pmid = {31956324}
}
@article{lin379887,
title = {In Vitro Evaluation of Different Prebiotics on the Modulation of Gut Microbiota Composition and Function in Morbid Obese and Normal-Weight Subjects.},
author = {Nogacka AM, Salazar N, Arboleya S, Ruas-Madiedo P, Mancabelli L, Suarez A, Martinez-Faedo C, Ventura M, Tochio T, Hirano K, Endo A, G de Los Reyes-Gavilan C, Gueimonde M.},
journal = {Int J Mol Sci},
year = {2020},
doi = {10.3390/ijms21030906},
pmid = {32019174}
}
@article{lin85083,
title = {Enzymatic Adaptation of Bifidobacterium bifidum to Host Glycans, Viewed from Glycoside Hydrolyases and Carbohydrate-Binding Modules.},
author = {Katoh T, Ojima MN, Sakanaka M, Ashida H, Gotoh A, Katayama T.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8040481},
pmid = {32231096}
}
@article{lin85104,
title = {Beyond Metabolism: The Complex Interplay Between Dietary Phytoestrogens, Gut Bacteria, and Cells of Nervous and Immune Systems.},
author = {Cady N, Peterson SR, Freedman SN, Mangalam AK.},
journal = {Front Neurol},
year = {2020},
doi = {10.3389/fneur.2020.00150},
pmid = {32231636}
}
@article{lin379862,
title = {Galacto-Oligosaccharide RP-G28 Improves Multiple Clinical Outcomes in Lactose-Intolerant Patients.},
author = {Chey W, Sandborn W, Ritter AJ, Foyt H, Azcarate-Peril MA, Savaiano DA.},
journal = {Nutrients},
year = {2020},
doi = {10.3390/nu12041058},
pmid = {32290344}
}
@article{lin379792,
title = {Effective bifidogenic growth factors cyclo-Val-Leu and cyclo-Val-Ile produced by Bacillus subtilis C-3102 in the human colonic microbiota model.},
author = {Hatanaka M, Morita H, Aoyagi Y, Sasaki K, Sasaki D, Kondo A, Nakamura T.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-64374-w},
pmid = {32372037}
}
@article{lin379776,
title = {Co-Culture with Bifidobacterium catenulatum Improves the Growth, Gut Colonization, and Butyrate Production of Faecalibacterium prausnitzii: In Vitro and In Vivo Studies.},
author = {Kim H, Jeong Y, Kang S, You HJ, Ji GE.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8050788},
pmid = {32466189}
}
@article{lin379921,
title = {Alterations of gut microbiome accelerate multiple myeloma progression by increasing the relative abundances of nitrogen-recycling bacteria.},
author = {Jian X, Zhu Y, Ouyang J, Wang Y, Lei Q, Xia J, Guan Y, Zhang J, Guo J, He Y, Wang J, Li J, Lin J, Su M, Li G, Wu M, Qiu L, Xiang J, Xie L, Jia W, Zhou W, Zhou W.},
journal = {Microbiome},
year = {2020},
doi = {10.1186/s40168-020-00854-5},
pmid = {32466801}
}
@article{lin85079,
title = {Bifidobacterium beta-Glucosidase Activity and Fermentation of Dietary Plant Glucosides Is Species and Strain Specific.},
author = {Modrackova N, Vlkova E, Tejnecky V, Schwab C, Neuzil-Bunesova V.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8060839},
pmid = {32503148}
}
@article{lin85078,
title = {Draft Genome Sequence of Bifidobacterium pseudocatenulatum Bif4, Isolated from Healthy Infant Feces.},
author = {Chander AM, Singh S, Sharma S, Chaudhry V, Rajarammohan S, Mantri SS, Bishnoi M, Bhadada SK, Kondepudi KK.},
journal = {Microbiol Resour Announc},
year = {2020},
doi = {10.1128/mra.00561-20},
pmid = {32586871}
}
@article{lin379808,
title = {Prebiotic Properties of Non-Fructosylated alpha-Galactooligosaccharides from PEA (Pisum sativum L.) Using Infant Fecal Slurries.},
author = {Marin-Manzano MDC, Hernandez-Hernandez O, Diez-Municio M, Delgado-Andrade C, Moreno FJ, Clemente A.},
journal = {Foods},
year = {2020},
doi = {10.3390/foods9070921},
pmid = {32668744}
}
@article{lin379823,
title = {Human milk and mucosa-associated disaccharides impact on cultured infant fecal microbiota.},
author = {Rubio-Del-Campo A, Alcantara C, Collado MC, Rodriguez-Diaz J, Yebra MJ.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-68718-4},
pmid = {32678209}
}
@article{lin379986,
title = {Design and Characterization of Bioactive Bilayer Films: Release Kinetics of Isopropyl Palmitate.},
author = {Luis A, Gallardo E, Ramos A, Domingues F.},
journal = {Antibiotics (Basel)},
year = {2020},
doi = {10.3390/antibiotics9080443},
pmid = {32722329}
}
@article{lin379936,
title = {Probiotic Supplementation During the Perinatal and Infant Period: Effects on Gut Dysbiosis and Disease.},
author = {Navarro-Tapia E, Sebastiani G, Sailer S, Toledano LA, Serra-Delgado M, Garcia-Algar O, Andreu-Fernandez V.},
journal = {Nutrients},
year = {2020},
doi = {10.3390/nu12082243},
pmid = {32727119}
}
@article{lin380005,
title = {Diverse Microbial Composition of Sourdoughs From Different Origins.},
author = {Comasio A, Verce M, Van Kerrebroeck S, De Vuyst L.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01212},
pmid = {32760353}
}
@article{lin379992,
title = {Persistence and Effect of a Multistrain Starter Culture on Antioxidant and Rheological Properties of Novel Wheat Sourdoughs and Bread.},
author = {Sidari R, Martorana A, Zappia C, Mincione A, Giuffre AM.},
journal = {Foods},
year = {2020},
doi = {10.3390/foods9091258},
pmid = {32911696}
}
@article{lin379990,
title = {Pullulan Films Containing Rockrose Essential Oil for Potential Food Packaging Applications.},
author = {Luis A, Ramos A, Domingues F.},
journal = {Antibiotics (Basel)},
year = {2020},
doi = {10.3390/antibiotics9100681},
pmid = {33049951}
}
@article{lin379723,
title = {Bifidobacteria in two-toed sloths (Choloepus didactylus): phylogenetic characterization of the novel taxon Bifidobacterium choloepi sp. nov.},
author = {Modesto M, Satti M, Watanabe K, Huang CH, Liou JS, Tamura T, Saito S, Mori K, Huang L, Sandri C, Spiezio C, Sgorbati B, Scarafile D, Camma C, Ancora M, Patavino C, Arita M, Mattarelli P.},
journal = {Int J Syst Evol Microbiol},
year = {2020},
doi = {10.1099/ijsem.0.004506},
pmid = {33052806}
}
@article{lin379989,
title = {Ayahuasca Beverages: Phytochemical Analysis and Biological Properties.},
author = {Goncalves J, Luis A, Gradillas A, Garcia A, Restolho J, Fernandez N, Domingues F, Gallardo E, Duarte AP.},
journal = {Antibiotics (Basel)},
year = {2020},
doi = {10.3390/antibiotics9110731},
pmid = {33114334}
}
@article{lin379983,
title = {Antimicrobial Biomasses from Lactic Acid Fermentation of Black Soldier Fly Prepupae and Related By-Products.},
author = {Hadj Saadoun J, Luparelli AV, Caligiani A, Macavei LI, Maistrello L, Neviani E, Galaverna G, Sforza S, Lazzi C.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8111785},
pmid = {33202551}
}
@article{lin379848,
title = {Changes in Phenolic Compounds and Antioxidant Activity of Fruit Musts and Fruit Wines during Simulated Digestion.},
author = {Tarko T, Duda-Chodak A, Soszka A.},
journal = {Molecules},
year = {2020},
doi = {10.3390/molecules25235574},
pmid = {33260996}
}
@article{lin379870,
title = {Effects of 8 Weeks of 2S-Hesperidin Supplementation on Performance in Amateur Cyclists.},
author = {Martinez-Noguera FJ, Marin-Pagan C, Carlos-Vivas J, Alcaraz PE.},
journal = {Nutrients},
year = {2020},
doi = {10.3390/nu12123911},
pmid = {33371483}
}
@article{lin379985,
title = {Exploring the Ecology of Bifidobacteria and Their Genetic Adaptation to the Mammalian Gut.},
author = {Duranti S, Longhi G, Ventura M, van Sinderen D, Turroni F.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms9010008},
pmid = {33375064}
}
@article{lin379721,
title = {Lactulose ingestion causes an increase in the abundance of gut-resident bifidobacteria in Japanese women: a randomised, double-blind, placebo-controlled crossover trial.},
author = {Sakai Y, Hamano H, Ochi H, Abe F, Masuda K, Iino H.},
journal = {Benef Microbes},
year = {2021},
doi = {10.3920/bm2020.0100},
pmid = {33393445}
}
@article{lin379907,
title = {Settlers of our inner surface - factors shaping the gut microbiota from birth to toddlerhood.},
author = {Laursen MF, Bahl MI, Licht TR.},
journal = {FEMS Microbiol Rev},
year = {2021},
doi = {10.1093/femsre/fuab001},
pmid = {33428723}
}
@article{lin85102,
title = {A Single Plasmid of Nisin-Controlled Bovine and Human Lactoferrin Expressing Elevated Antibacterial Activity of Lactoferrin-Resistant Probiotic Strains.},
author = {Liu ZS, Lin CF, Lee CP, Hsieh MC, Lu HF, Chen YF, Ku YW, Chen PW.},
journal = {Antibiotics (Basel)},
year = {2021},
doi = {10.3390/antibiotics10020120},
pmid = {33513782}
}
@article{lin379824,
title = {Ethnicity influences the gut microbiota of individuals sharing a geographical location: a cross-sectional study from a middle-income country.},
author = {Dwiyanto J, Hussain MH, Reidpath D, Ong KS, Qasim A, Lee SWH, Lee SM, Foo SC, Chong CW, Rahman S.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-82311-3},
pmid = {33514807}
}
@article{lin379861,
title = {In vitro Selection of Probiotics for Microbiota Modulation in Normal-Weight and Severely Obese Individuals: Focus on Gas Production and Interaction With Intestinal Epithelial Cells.},
author = {Nogacka AM, de Los Reyes-Gavilan CG, Arboleya S, Ruas-Madiedo P, Martinez-Faedo C, Suarez A, He F, Harata G, Endo A, Salazar N, Gueimonde M.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.630572},
pmid = {33633711}
}
@article{lin379859,
title = {Lactobacillus paracasei DTA81, a cholesterol-lowering strain having immunomodulatory activity, reveals gut microbiota regulation capability in BALB/c mice receiving high-fat diet.},
author = {Tarrah A, Dos Santos Cruz BC, Sousa Dias R, da Silva Duarte V, Pakroo S, Licursi de Oliveira L, Gouveia Peluzio MC, Corich V, Giacomini A, Oliveira de Paula S.},
journal = {J Appl Microbiol},
year = {2021},
doi = {10.1111/jam.15058},
pmid = {33709536}
}
@article{lin379993,
title = {Fungal GH25 muramidases: New family members with applications in animal nutrition and a crystal structure at 0.78Å resolution.},
author = {Moroz OV, Blagova E, Taylor E, Turkenburg JP, Skov LK, Gippert GP, Schnorr KM, Ming L, Ye L, Klausen M, Cohn MT, Schmidt EGW, Nymand-Grarup S, Davies GJ, Wilson KS.},
journal = {PLoS One},
year = {2021},
doi = {10.1371/journal.pone.0248190},
pmid = {33711051}
}
@article{lin379857,
title = {The genus bifidobacterium: From genomics to functionality of an important component of the mammalian gut microbiota running title: Bifidobacterial adaptation to and interaction with the host.},
author = {Alessandri G, van Sinderen D, Ventura M.},
journal = {Comput Struct Biotechnol J},
year = {2021},
doi = {10.1016/j.csbj.2021.03.006},
pmid = {33777340}
}
@article{lin379889,
title = {Bacterial community structure alterations within the colorectal cancer gut microbiome.},
author = {Loftus M, Hassouneh SA, Yooseph S.},
journal = {BMC Microbiol},
year = {2021},
doi = {10.1186/s12866-021-02153-x},
pmid = {33789570}
}
@article{lin379893,
title = {The Impact of Migration on the Gut Metagenome of South Asian Canadians.},
author = {Copeland JK, Chao G, Vanderhout S, Acton E, Wang PW, Benchimol EI, El Sohami A, Croitoru K, Gommerman JL, Guttman DS, GEMINI Research Team.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1902705},
pmid = {33794735}
}
@article{lin379977,
title = {Pullulan-Apple Fiber Biocomposite Films: Optical, Mechanical, Barrier, Antioxidant and Antibacterial Properties.},
author = {Luis A, Ramos A, Domingues F.},
journal = {Polymers (Basel)},
year = {2021},
doi = {10.3390/polym13060870},
pmid = {33799881}
}
@article{lin379822,
title = {Early-Life Development of the Bifidobacterial Community in the Infant Gut.},
author = {Saturio S, Nogacka AM, Suarez M, Fernandez N, Mantecon L, Mancabelli L, Milani C, Ventura M, de Los Reyes-Gavilan CG, Solis G, Arboleya S, Gueimonde M.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22073382},
pmid = {33806135}
}
@article{lin379895,
title = {Cytokine-specific autoantibodies shape the gut microbiome in autoimmune polyendocrine syndrome type 1.},
author = {Petersen AO, Jokinen M, Plichta DR, Liebisch G, Gronwald W, Dettmer K, Oefner PJ, Vlamakis H, Chung DC, Ranki A, Xavier RJ.},
journal = {J Allergy Clin Immunol},
year = {2021},
doi = {10.1016/j.jaci.2021.03.025},
pmid = {33819509}
}
@article{lin379716,
title = {Association Between the Mode of Delivery and Infant Gut Microbiota Composition Up to 6 Months of Age: A Systematic Literature Review Considering the Role of Breastfeeding.},
author = {Princisval L, Rebelo F, Williams BL, Coimbra AC, Crovesy L, Ferreira AL, Kac G.},
journal = {Nutr Rev},
year = {2021},
doi = {10.1093/nutrit/nuab008},
pmid = {33837424}
}
@article{lin379855,
title = {Alteration of the Gut Microbiome in Chronic Kidney Disease Patients and Its Association With Serum Free Immunoglobulin Light Chains.},
author = {Liu F, Xu X, Chao L, Chen K, Shao A, Sun D, Hong Y, Hu R, Jiang P, Zhang N, Xiao Y, Yan F, Feng N.},
journal = {Front Immunol},
year = {2021},
doi = {10.3389/fimmu.2021.609700},
pmid = {33868230}
}
@article{lin379805,
title = {Resistome and microbial profiling of pediatric patient's gut infected with multidrug-resistant diarrhoeagenic Enterobacteriaceae using next-generation sequencing; the first study from Pakistan.},
author = {Afridi OK, Ali J, Chang JH.},
journal = {Libyan J Med},
year = {2021},
doi = {10.1080/19932820.2021.1915615},
pmid = {33877031}
}
@article{lin379849,
title = {Colonization of Supplemented Bifidobacterium breve M-16V in Low Birth Weight Infants and Its Effects on Their Gut Microbiota Weeks Post-administration.},
author = {Horigome A, Hisata K, Odamaki T, Iwabuchi N, Xiao JZ, Shimizu T.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.610080},
pmid = {33897631}
}
@article{lin379885,
title = {Strain engraftment competition and functional augmentation in a multi-donor fecal microbiota transplantation trial for obesity.},
author = {Wilson BC, Vatanen T, Jayasinghe TN, Leong KSW, Derraik JGB, Albert BB, Chiavaroli V, Svirskis DM, Beck KL, Conlon CA, Jiang Y, Schierding W, Holland DJ, Cutfield WS, O'Sullivan JM.},
journal = {Microbiome},
year = {2021},
doi = {10.1186/s40168-021-01060-7},
pmid = {33985595}
}
@article{lin85085,
title = {Slimy partners: the mucus barrier and gut microbiome in ulcerative colitis.},
author = {Fang J, Wang H, Zhou Y, Zhang H, Zhou H, Zhang X.},
journal = {Exp Mol Med},
year = {2021},
doi = {10.1038/s12276-021-00617-8},
pmid = {34002011}
}
@article{lin379844,
title = {Gut Microbial SNPs Induced by High-Fiber Diet Dominate Nutrition Metabolism and Environmental Adaption of Faecalibacterium prausnitzii in Obese Children.},
author = {Li H, Zhao L, Zhang M.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.683714},
pmid = {34135881}
}
@article{lin379837,
title = {Model Selection Reveals the Butyrate-Producing Gut Bacterium Coprococcus eutactus as Predictor for Language Development in 3-Year-Old Rural Ugandan Children.},
author = {Kort R, Schlosser J, Vazquez AR, Atukunda P, Muhoozi GKM, Wacoo AP, Sybesma WFH, Westerberg AC, Iversen PO, Schoen ED.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.681485},
pmid = {34149673}
}
@article{lin379850,
title = {The Young Age and Plant-Based Diet Hypothesis for Low SARS-CoV-2 Infection and COVID-19 Pandemic in Sub-Saharan Africa.},
author = {Losso JN, Losso MN, Toc M, Inungu JN, Finley JW.},
journal = {Plant Foods Hum Nutr},
year = {2021},
doi = {10.1007/s11130-021-00907-6},
pmid = {34169470}
}
@article{lin379913,
title = {mbImpute: an accurate and robust imputation method for microbiome data.},
author = {Jiang R, Li WV, Li JJ.},
journal = {Genome Biol},
year = {2021},
doi = {10.1186/s13059-021-02400-4},
pmid = {34183041}
}
@article{lin379840,
title = {Longitudinal Survey of Fecal Microbiota in Healthy Dogs Administered a Commercial Probiotic.},
author = {Ciaravolo S, Martinez-Lopez LM, Allcock RJN, Woodward AP, Mansfield C.},
journal = {Front Vet Sci},
year = {2021},
doi = {10.3389/fvets.2021.664318},
pmid = {34235200}
}
@article{lin379853,
title = {Production, Storage Stability, and Susceptibility Testing of Reuterin and Its Impact on the Murine Fecal Microbiome and Volatile Organic Compound Profile.},
author = {Castellani C, Obermuller B, Kienesberger B, Singer G, Peterbauer C, Grabherr R, Mayrhofer S, Klymiuk I, Horvath A, Stadlbauer V, Russmayer H, Miekisch W, Fuchs P, Till H, Heinl S.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.699858},
pmid = {34394042}
}
@article{lin379898,
title = {Oral Microbiota: A Major Player in the Diagnosis of Systemic Diseases.},
author = {Thomas C, Minty M, Vinel A, Canceill T, Loubieres P, Burcelin R, Kaddech M, Blasco-Baque V, Laurencin-Dalicieux S.},
journal = {Diagnostics (Basel)},
year = {2021},
doi = {10.3390/diagnostics11081376},
pmid = {34441309}
}
@article{lin379802,
title = {The mutL Gene as a Genome-Wide Taxonomic Marker for High Resolution Discrimination of Lactiplantibacillus plantarum and Its Closely Related Taxa.},
author = {Huang CH, Chen CC, Lin YC, Chen CH, Lee AY, Liou JS, Gu CT, Huang L.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9081570},
pmid = {34442649}
}
@article{lin379882,
title = {Building Robust Assemblages of Bacteria in the Human Gut in Early Life.},
author = {Tannock GW.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.01449-21},
pmid = {34469198}
}
@article{lin379804,
title = {The gut microbial diversity of colon cancer patients and the clinical significance.},
author = {He T, Cheng X, Xing C.},
journal = {Bioengineered},
year = {2021},
doi = {10.1080/21655979.2021.1972077},
pmid = {34551683}
}
@article{lin85090,
title = {Comparative Analyses of the Transport Proteins Encoded within the Genomes of nine Bifidobacterium Species.},
author = {Zafar H, Saier MH.},
journal = {Microb Physiol},
year = {2022},
doi = {10.1159/000518954},
pmid = {34555832}
}
@article{lin379839,
title = {Comparative Metagenomics Reveals Microbial Communities and Their Associated Functions in Two Types of Fuzhuan Brick Tea.},
author = {Wang X, Du G, Chen H, Zeng X, Liu B, Guo C, Sheng Q, Yuan Y, Yue T.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.705681},
pmid = {34603231}
}
@article{lin379965,
title = {Screening of the Potential Bioactivities of Pennyroyal (Mentha pulegium L.) Essential Oil.},
author = {Luis A, Domingues F.},
journal = {Antibiotics (Basel)},
year = {2021},
doi = {10.3390/antibiotics10101266},
pmid = {34680848}
}
@article{lin379963,
title = {Identification of Potential Citrate Metabolism Pathways in Carnobacterium maltaromaticum.},
author = {Li H, Ramia NE, Borges F, Revol-Junelles AM, Vogensen FK, Leisner JJ.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9102169},
pmid = {34683489}
}
@article{lin379984,
title = {Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family.},
author = {Kashima T, Okumura K, Ishiwata A, Kaieda M, Terada T, Arakawa T, Yamada C, Shimizu K, Tanaka K, Kitaoka M, Ito Y, Fujita K, Fushinobu S.},
journal = {J Biol Chem},
year = {2021},
doi = {10.1016/j.jbc.2021.101324},
pmid = {34688653}
}
@article{lin379975,
title = {Emerging Evidence on the Effects of Dietary Factors on the Gut Microbiome in Colorectal Cancer.},
author = {Appunni S, Rubens M, Ramamoorthy V, Tonse R, Saxena A, McGranaghan P, Kaiser A, Kotecha R.},
journal = {Front Nutr},
year = {2021},
doi = {10.3389/fnut.2021.718389},
pmid = {34708063}
}
@article{lin379787,
title = {Impacts of Cigarette Smoking Status on Metabolomic and Gut Microbiota Profile in Male Patients With Coronary Artery Disease: A Multi-Omics Study.},
author = {Hu X, Fan Y, Li H, Zhou R, Zhao X, Sun Y, Zhang S.},
journal = {Front Cardiovasc Med},
year = {2021},
doi = {10.3389/fcvm.2021.766739},
pmid = {34778417}
}
@article{lin379863,
title = {Species-Level Analysis of the Human Gut Microbiome Shows Antibiotic Resistance Genes Associated With Colorectal Cancer.},
author = {Liu C, Li Z, Ding J, Zhen H, Fang M, Nie C.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.765291},
pmid = {34975790}
}
@article{lin379777,
title = {Distinct Gut Microbiota in Patients with Asymptomatic Hyperuricemia: A Potential Protector against Gout Development.},
author = {Kim HW, Yoon EJ, Jeong SH, Park MC.},
journal = {Yonsei Med J},
year = {2022},
doi = {10.3349/ymj.2022.63.3.241},
pmid = {35184426}
}
@article{lin85082,
title = {Genome-Wide Assessment of Stress-Associated Genes in Bifidobacteria.},
author = {Schopping M, Vesth T, Jensen K, Franzen CJ, Zeidan AA.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.02251-21},
pmid = {35311508}
}
@article{lin379707,
title = {Characteristics of the gut microbiota in Bifidobacterium catenulatum LI10 pretreated rats with lower levels of D-galactosamine-induced liver damage.},
author = {Zha H, Si G, Wang C, Lv J, Zhang H, Li L.},
journal = {J Appl Microbiol},
year = {2022},
doi = {10.1111/jam.15562},
pmid = {35365858}
}
@article{lin379897,
title = {Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens.},
author = {Oladeinde A, Abdo Z, Zwirzitz B, Woyda R, Lakin SM, Press MO, Cox NA, Thomas JC, Looft T, Rothrock MJ, Zock G, Plumblee Lawrence J, Cudnik D, Ritz C, Aggrey SE, Liachko I, Grove JR, Wiersma C.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.02517-21},
pmid = {35416680}
}
@article{lin379714,
title = {Red Raspberry and Fructo-Oligosaccharide Supplementation, Metabolic Biomarkers, and the Gut Microbiota in Adults with Prediabetes: A Randomized Crossover Clinical Trial.},
author = {Zhang X, Zhao A, Sandhu AK, Edirisinghe I, Burton-Freeman BM.},
journal = {J Nutr},
year = {2022},
doi = {10.1093/jn/nxac037},
pmid = {35421233}
}
@article{lin85080,
title = {Genomic Island-Mediated Horizontal Transfer of the Erythromycin Resistance Gene erm(X) among Bifidobacteria.},
author = {Li B, Chen D, Lin F, Wu C, Cao L, Chen H, Hu Y, Yin Y.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.00410-22},
pmid = {35477272}
}
@article{lin379841,
title = {Iron Supplementation at the Crossroads of Nutrition and Gut Microbiota: The State of the Art.},
author = {Puga AM, Samaniego-Vaesken ML, Montero-Bravo A, Ruperto M, Partearroyo T, Varela-Moreiras G.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14091926},
pmid = {35565894}
}
@article{lin379832,
title = {Feed Insects as a Reservoir of Granadaene-Producing Lactococci.},
author = {Neuzil-Bunesova V, Ramirez Garcia A, Modrackova N, Makovska M, Sabolova M, Sproer C, Bunk B, Blom J, Schwab C.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.848490},
pmid = {35615513}
}
@article{lin379833,
title = {Transcriptome analysis of Lactobacillus rhamnosus GG strain treated with prebiotic - bovine lactoferrin under a cold environment.},
author = {Liu ZS, Lin CF, Chen PW.},
journal = {J Food Drug Anal},
year = {2021},
doi = {10.38212/2224-6614.3369},
pmid = {35696240}
}
@article{lin379736,
title = {Comparative genomic analysis revealed genetic divergence between Bifidobacterium catenulatum subspecies present in infant versus adult guts.},
author = {Liu J, Li W, Yao C, Yu J, Zhang H.},
journal = {BMC Microbiol},
year = {2022},
doi = {10.1186/s12866-022-02573-3},
pmid = {35710325}
}
@article{lin379797,
title = {2'-Fucosyllactose Increases the Abundance of Blautia in the Presence of Extracellular Fucosidase-Possessing Bacteria.},
author = {Horigome A, Hashikura N, Yoshida K, Xiao JZ, Odamaki T.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.913624},
pmid = {35722280}
}
@article{lin379806,
title = {A comprehensive analysis of the microbiota composition and host driver gene mutations in colorectal cancer.},
author = {Yuan D, Tao Y, Wang H, Wang J, Cao Y, Cao W, Pan S, Yu Z.},
journal = {Invest New Drugs},
year = {2022},
doi = {10.1007/s10637-022-01263-1},
pmid = {35727391}
}
@article{lin379846,
title = {Hesperidin Bioavailability Is Increased by the Presence of 2S-Diastereoisomer and Micronization-A Randomized, Crossover and Double-Blind Clinical Trial.},
author = {Crescenti A, Caimari A, Alcaide-Hidalgo JM, Marine-Casado R, Valls RM, Companys J, Salamanca P, Calderon-Perez L, Pla-Paga L, Pedret A, Delpino-Rius A, Herrero P, Samarra I, Arola L, Sola R, Del Bas JM.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14122481},
pmid = {35745211}
}
@article{lin379847,
title = {Multi-Omic Analyses Reveal Bifidogenic Effect and Metabolomic Shifts in Healthy Human Cohort Supplemented With a Prebiotic Dietary Fiber Blend.},
author = {Kang JW, Tang X, Walton CJ, Brown MJ, Brewer RA, Maddela RL, Zheng JJ, Agus JK, Zivkovic AM.},
journal = {Front Nutr},
year = {2022},
doi = {10.3389/fnut.2022.908534},
pmid = {35782954}
}
@article{lin379710,
title = {Gut Microbiota in Monozygotic Twins Discordant for Parkinson's Disease.},
author = {Bolliri C, Fontana A, Cereda E, Barichella M, Cilia R, Ferri V, Caronni S, Calandrella D, Morelli L, Pezzoli G.},
journal = {Ann Neurol},
year = {2022},
doi = {10.1002/ana.26454},
pmid = {35852145}
}
@article{lin379827,
title = {Host-microbial co-metabolites modulated by human milk oligosaccharides relate to reduced risk of respiratory tract infections.},
author = {Martin FP, Tytgat HLP, Krogh Pedersen H, Moine D, Eklund AC, Berger B, Sprenger N.},
journal = {Front Nutr},
year = {2022},
doi = {10.3389/fnut.2022.935711},
pmid = {35990340}
}
@article{lin85093,
title = {Design, construction, and in vivo augmentation of a complex gut microbiome.},
author = {Cheng AG, Ho PY, Aranda-Diaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA.},
journal = {Cell},
year = {2022},
doi = {10.1016/j.cell.2022.08.003},
pmid = {36070752}
}
@article{lin380020,
title = {Designation of optimal reference strains representing the infant gut bifidobacterial species through a comprehensive multi-omics approach.},
author = {Fontana F, Alessandri G, Tarracchini C, Bianchi MG, Rizzo SM, Mancabelli L, Lugli GA, Argentini C, Vergna LM, Anzalone R, Longhi G, Viappiani A, Taurino G, Chiu M, Turroni F, Bussolati O, van Sinderen D, Milani C, Ventura M.},
journal = {Environ Microbiol},
year = {2022},
doi = {10.1111/1462-2920.16205},
pmid = {36123315}
}
@article{lin379790,
title = {Phenolic Compounds Present in Yerba Mate Potentially Increase Human Health: A Critical Review.},
author = {de Vasconcellos AC, Frazzon J, Zapata Norena CP.},
journal = {Plant Foods Hum Nutr},
year = {2022},
doi = {10.1007/s11130-022-01008-8},
pmid = {36169873}
}
@article{lin379964,
title = {Anti-Inflammatory and Antimicrobial Activities of Portuguese Prunus avium L. (Sweet Cherry) By-Products Extracts.},
author = {Nunes AR, Flores-Felix JD, Goncalves AC, Falcao A, Alves G, Silva LR.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14214576},
pmid = {36364838}
}
@article{lin379741,
title = {Interplay of Lymphocytes with the Intestinal Microbiota in Children with Nonalcoholic Fatty Liver Disease.},
author = {Liang T, Li D, Zunong J, Li M, Amaerjiang N, Xiao H, Khattab NM, Vermund SH, Hu Y.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14214641},
pmid = {36364902}
}
@article{lin379860,
title = {Effect of natural polyphenols in Chinese herbal medicine on obesity and diabetes: Interactions among gut microbiota, metabolism, and immunity.},
author = {Chen K, Gao Z, Ding Q, Tang C, Zhang H, Zhai T, Xie W, Jin Z, Zhao L, Liu W.},
journal = {Front Nutr},
year = {2022},
doi = {10.3389/fnut.2022.962720},
pmid = {36386943}
}
@article{lin379813,
title = {Fecal Bacterial Community and Metagenome Function in Asians with Type 2 Diabetes, According to Enterotypes.},
author = {Wu X, Park S.},
journal = {Biomedicines},
year = {2022},
doi = {10.3390/biomedicines10112998},
pmid = {36428566}
}
@article{lin379974,
title = {Probiogenomic In-Silico Analysis and Safety Assessment of Lactiplantibacillus plantarum DJF10 Strain Isolated from Korean Raw Milk.},
author = {Kandasamy S, Yoo J, Yun J, Lee KH, Kang HB, Kim JE, Oh MH, Ham JS.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms232214494},
pmid = {36430971}
}
@article{lin379967,
title = {Lactiplantibacillus plantarum DSM20174 Attenuates the Progression of Non-Alcoholic Fatty Liver Disease by Modulating Gut Microbiota, Improving Metabolic Risk Factors, and Attenuating Adipose Inflammation.},
author = {Riezu-Boj JI, Barajas M, Perez-Sanchez T, Pajares MJ, Arana M, Milagro FI, Urtasun R.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14245212},
pmid = {36558371}
}
@article{lin379886,
title = {Mapping the early life gut microbiome in neonates with critical congenital heart disease: multiomics insights and implications for host metabolic and immunological health.},
author = {Huang Y, Lu W, Zeng M, Hu X, Su Z, Liu Y, Liu Z, Yuan J, Li L, Zhang X, Huang L, Hu W, Wang X, Li S, Zhang H.},
journal = {Microbiome},
year = {2022},
doi = {10.1186/s40168-022-01437-2},
pmid = {36581858}
}
@article{lin379800,
title = {Gut Microbiota Signature of Obese Adults Across Different Classifications.},
author = {Hu J, Guo P, Mao R, Ren Z, Wen J, Yang Q, Yan T, Yu J, Zhang T, Liu Y.},
journal = {Diabetes Metab Syndr Obes},
year = {2022},
doi = {10.2147/dmso.s387523},
pmid = {36601354}
}
@article{lin379915,
title = {Polyphenols as Drivers of a Homeostatic Gut Microecology and Immuno-Metabolic Traits of Akkermansia muciniphila: From Mouse to Man.},
author = {Rodriguez-Daza MC, de Vos WM.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms24010045},
pmid = {36613488}
}
@article{lin379871,
title = {Combination of poly-gamma-glutamic acid and galactooligosaccharide improves intestinal microbiota, defecation status, and relaxed mood in humans: a randomized, double-blind, parallel-group comparison trial.},
author = {Umeda K, Ikeda A, Uchida R, Sasahara I, Mine T, Murakami H, Kameyama K.},
journal = {Biosci Microbiota Food Health},
year = {2023},
doi = {10.12938/bmfh.2021-084},
pmid = {36660591}
}
@article{lin379816,
title = {Association between inflammation, lipopolysaccharide binding protein, and gut microbiota composition in a New Hampshire Bhutanese refugee population with a high burden of type 2 diabetes.},
author = {Moser B, Moore D, Khadka B, Lyons C, Foxall T, Andam CP, Parker CJ, Ochin C, Garelnabi M, Sevigny J, Thomas WK, Bigornia S, Dao MC.},
journal = {Front Nutr},
year = {2022},
doi = {10.3389/fnut.2022.1059163},
pmid = {36687728}
}
@article{lin379988,
title = {Genetic and phenotypic assessment of the antimicrobial activity of three potential probiotic lactobacilli against human enteropathogenic bacteria.},
author = {Kiousi DE, Efstathiou C, Tzampazlis V, Plessas S, Panopoulou M, Koffa M, Galanis A.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1127256},
pmid = {36844407}
}
@article{lin380019,
title = {Identification of conserved genomic signatures specific to Bifidobacterium species colonising the human gut.},
author = {Arjun OK, Prakash T.},
journal = {3 Biotech},
year = {2023},
doi = {10.1007/s13205-023-03492-4},
pmid = {36852175}
}
@article{lin379867,
title = {Milk glycan metabolism by intestinal bifidobacteria: insights from comparative genomics.},
author = {Arzamasov AA, Osterman AL.},
journal = {Crit Rev Biochem Mol Biol},
year = {2022},
doi = {10.1080/10409238.2023.2182272},
pmid = {36866565}
}
@article{lin379779,
title = {Tea Consumption and Gut Microbiome in Older Chinese Adults.},
author = {Wang L, Shu XO, Cai H, Yang Y, Xu W, Wu J, Cai Q, Zheng W, Yu D.},
journal = {J Nutr},
year = {2023},
doi = {10.1016/j.tjnut.2022.12.002},
pmid = {36913464}
}
@article{lin379969,
title = {Optimization of Whey Protein-Based Films Incorporating Foeniculum vulgare Mill. Essential Oil.},
author = {Pedro S, Pereira L, Domingues F, Ramos A, Luis A.},
journal = {J Funct Biomater},
year = {2023},
doi = {10.3390/jfb14030121},
pmid = {36976045}
}
@article{lin379765,
title = {HMOs Exert Marked Bifidogenic Effects on Children's Gut Microbiota Ex Vivo, Due to Age-Related Bifidobacterium Species Composition.},
author = {Bajic D, Wiens F, Wintergerst E, Deyaert S, Baudot A, Van den Abbeele P.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15071701},
pmid = {37049541}
}
@article{lin379770,
title = {Therapeutic and Preventive Effect of Orally Administered Prebiotics on Atopic Dermatitis in a Mouse Model.},
author = {Kang M, Jung JH, Kim JY, Hong SH, Her Y.},
journal = {Allergy Asthma Immunol Res},
year = {2023},
doi = {10.4168/aair.2023.15.3.303},
pmid = {37075794}
}
@article{lin379916,
title = {Interactions between the lipidome and genetic and environmental factors in autism.},
author = {Yap CX, Henders AK, Alvares GA, Giles C, Huynh K, Nguyen A, Wallace L, McLaren T, Yang Y, Hernandez LM, Gandal MJ, Hansell NK, Cleary D, Grove R, Hafekost C, Harun A, Holdsworth H, Jellett R, Khan F, Lawson LP, Leslie J, Levis Frenk M, Masi A, Mathew NE, Muniandy M, Nothard M, Miller JL, Nunn L, Strike LT, Cadby G, Moses EK, Busselton Health Study Investigators, de Zubicaray GI, Thompson PM, McMahon KL, Wright MJ, Visscher PM, Dawson PA, Dissanayake C, Eapen V, Heussler HS, Whitehouse AJO, Meikle PJ, Wray NR, Gratten J.},
journal = {Nat Med},
year = {2023},
doi = {10.1038/s41591-023-02271-1},
pmid = {37076741}
}
@article{lin379981,
title = {A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiome.},
author = {Zhang D, Zhang J, Kalimuthu S, Liu J, Song ZM, He BB, Cai P, Zhong Z, Feng C, Neelakantan P, Li YX.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01540-y},
pmid = {37101246}
}
@article{lin379845,
title = {Impact of Gut Microbiota on Host Aggression: Potential Applications for Therapeutic Interventions Early in Development.},
author = {Mikami K, Watanabe N, Tochio T, Kimoto K, Akama F, Yamamoto K.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11041008},
pmid = {37110431}
}
@article{lin379794,
title = {Effects of Gut Microbiome Modulation on Reducing Adverse Health Outcomes among Elderly and Diabetes Patients during the COVID-19 Pandemic: A Randomised, Double-Blind, Placebo-Controlled Trial (IMPACT Study).},
author = {Wong MCS, Zhang L, Ching JYL, Mak JWY, Huang J, Wang S, Mok CKP, Wong A, Chiu OL, Fung YT, Cheong PK, Tun HM, Ng SC, Chan FKL.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15081982},
pmid = {37111201}
}
@article{lin379746,
title = {Evaluating the prebiotic effect of oligosaccharides on gut microbiome wellness using in vitro fecal fermentation.},
author = {Lee DH, Seong H, Chang D, Gupta VK, Kim J, Cheon S, Kim G, Sung J, Han NS.},
journal = {NPJ Sci Food},
year = {2023},
doi = {10.1038/s41538-023-00195-1},
pmid = {37160919}
}
@article{lin379801,
title = {Studies of the Impact of the Bifidobacterium Species on Inducible Nitric Oxide Synthase Expression and Nitric Oxide Production in Murine Macrophages of the BMDM Cell Line.},
author = {Zablocka A, Jakubczyk D, Leszczynska K, Pacyga-Prus K, Macala J, Gorska S.},
journal = {Probiotics Antimicrob Proteins},
year = {2024},
doi = {10.1007/s12602-023-10093-3},
pmid = {37227688}
}
@article{lin379852,
title = {Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach.},
author = {Feehily C, O'Neill IJ, Walsh CJ, Moore RL, Killeen SL, Geraghty AA, Lawton EM, Byrne D, Sanchez-Gallardo R, Nori SRC, Nielsen IB, Wortmann E, Matthews E, O'Flaherty R, Rudd PM, Groeger D, Shanahan F, Saldova R, McAuliffe FM, Van Sinderen D, Cotter PD.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-38694-0},
pmid = {37230981}
}
@article{lin379968,
title = {Production and Characterization of k-Carrageenan Films Incorporating Cymbopogon winterianus Essential Oil as New Food Packaging Materials.},
author = {Santos C, Ramos A, Luis A, Amaral ME.},
journal = {Foods},
year = {2023},
doi = {10.3390/foods12112169},
pmid = {37297414}
}
@article{lin379803,
title = {Gut microbial composition and functionality of school-age Mexican population with metabolic syndrome and type-2 diabetes mellitus using shotgun metagenomic sequencing.},
author = {Carrizales-Sanchez AK, Tamez-Rivera O, Garcia-Gamboa R, Garcia-Cayuela T, Rodriguez-Gutierrez NA, Elizondo-Montemayor L, Garcia-Rivas G, Pacheco A, Hernandez-Brenes C, Senes-Guerrero C.},
journal = {Front Pediatr},
year = {2023},
doi = {10.3389/fped.2023.1193832},
pmid = {37342535}
}
@article{lin85088,
title = {Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome.},
author = {Wang M, Osborn LJ, Jain S, Meng X, Weakley A, Yan J, Massey WJ, Varadharajan V, Horak A, Banerjee R, Allende DS, Chan ER, Hajjar AM, Wang Z, Dimas A, Zhao A, Nagashima K, Cheng AG, Higginbottom S, Hazen SL, Brown JM, Fischbach MA.},
journal = {Cell},
year = {2023},
doi = {10.1016/j.cell.2023.05.037},
pmid = {37352836}
}
@article{lin379799,
title = {The Effect of Human Milk Oligosaccharides and Bifidobacterium longum subspecies infantis Bi-26 on Simulated Infant Gut Microbiome and Metabolites.},
author = {Salli K, Hirvonen J, Anglenius H, Hibberd AA, Ahonen I, Saarinen MT, Maukonen J, Ouwehand AC.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11061553},
pmid = {37375055}
}
@article{lin379781,
title = {Exploring the Potential of Oral Microbiome Biomarkers for Colorectal Cancer Diagnosis and Prognosis: A Systematic Review.},
author = {Negrut RL, Cote A, Maghiar AM.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11061586},
pmid = {37375087}
}
@article{lin85105,
title = {Featured Prebiotic Agent: The Roles and Mechanisms of Direct and Indirect Prebiotic Activities of Lactoferrin and Its Application in Disease Control.},
author = {Liu ZS, Chen PW.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15122759},
pmid = {37375663}
}
@article{lin379962,
title = {Influence of microbial cell morphology and composition on radio frequency heating of simple media at different frequencies.},
author = {Espitia J, Verheyen D, Kozak DS, Van Impe JFM.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-35705-4},
pmid = {37407624}
}
@article{lin379856,
title = {Strain-level screening of human gut microbes identifies Blautia producta as a new anti-hyperlipidemic probiotic.},
author = {Xu W, Yu J, Yang Y, Li Z, Zhang Y, Zhang F, Wang Q, Xie Y, Zhao B, Wu C.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2228045},
pmid = {37408362}
}
@article{lin379705,
title = {Microbiota dysbiosis associated with type 2 diabetes-like effects caused by chronic exposure to a mixture of chlorinated persistent organic pollutants in zebrafish.},
author = {Lee H, Yoon S, Park YH, Lee JS, Rhyu DY, Kim KT.},
journal = {Environ Pollut},
year = {2023},
doi = {10.1016/j.envpol.2023.122108},
pmid = {37422083}
}
@article{lin379815,
title = {Bifidobacterium breve PRL2020: Antibiotic-Resistant Profile and Genomic Detection of Antibiotic Resistance Determinants.},
author = {Di Pierro F, Campedelli I, De Marta P, Fracchetti F, Del Casale A, Cavecchia I, Matera M, Cazzaniga M, Bertuccioli A, Guasti L, Zerbinati N.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11071649},
pmid = {37512822}
}
@article{lin379748,
title = {The interactions between host genome and gut microbiome increase the risk of psychiatric disorders: Mendelian randomization and biological annotation.},
author = {Xiao L, Liu S, Wu Y, Huang Y, Tao S, Liu Y, Tang Y, Xie M, Ma Q, Yin Y, Dai M, Zhang M, Llamocca E, Gui H, Wang Q.},
journal = {Brain Behav Immun},
year = {2023},
doi = {10.1016/j.bbi.2023.08.003},
pmid = {37557965}
}
@article{lin379810,
title = {Acquiring bifidobacteria species from formula-fed and breast-fed newborns: identifying, quantifying and creating an antibiogram.},
author = {Kammara R, Nellikka A.},
journal = {Access Microbiol},
year = {2023},
doi = {10.1099/acmi.0.000590.v3},
pmid = {37691835}
}
@article{lin379730,
title = {Gut microbiome is associated with asthma and race in children with food allergy.},
author = {Mahdavinia M, Fyolek JP, Jiang J, Thivalapill N, Bilaver LA, Warren C, Fox S, Nimmagadda SR, Newmark PJ, Sharma H, Assa'ad A, Seed PC, Gupta RS.},
journal = {J Allergy Clin Immunol},
year = {2023},
doi = {10.1016/j.jaci.2023.07.024},
pmid = {37714436}
}
@article{lin379865,
title = {Heat-inactivated Bifidobacterium adolescentis ameliorates colon senescence through Paneth-like-cell-mediated stem cell activation.},
author = {Qi Y, He J, Zhang Y, Ge Q, Wang Q, Chen L, Xu J, Wang L, Chen X, Jia D, Lin Y, Xu C, Zhang Y, Hou T, Si J, Chen S, Wang L.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-41827-0},
pmid = {37777508}
}
@article{lin379778,
title = {Characterisation of Indian gut microbiome for B-vitamin production and its comparison with Chinese cohort.},
author = {Chandel N, Somvanshi PR, Thakur V.},
journal = {Br J Nutr},
year = {2024},
doi = {10.1017/s0007114523002179},
pmid = {37781761}
}
@article{lin379950,
title = {Encapsulating potential and functional properties of exopolysaccharide from Limosilactobacillus reuteri KCTC 14626BP isolated from human breast milk.},
author = {Vijayalakshmi S, Kim JR, Chelliah R, Barathikannan K, Tyagi A, Aloo SO, Chen X, Yan P, Shan L, Oh DH.},
journal = {Int J Biol Macromol},
year = {2023},
doi = {10.1016/j.ijbiomac.2023.127330},
pmid = {37832623}
}
@article{lin379970,
title = {First Chemical Profile Analysis of Acacia Pods.},
author = {Pedro SI, Fernandes TA, Luis A, Antunes AMM, Goncalves JC, Gominho J, Gallardo E, Anjos O.},
journal = {Plants (Basel)},
year = {2023},
doi = {10.3390/plants12193486},
pmid = {37836226}
}
@article{lin379783,
title = {The novel immunobiotic Clostridium butyricum S-45-5 displays broad-spectrum antiviral activity in vitro and in vivo by inducing immune modulation.},
author = {Chathuranga K, Shin Y, Uddin MB, Paek J, Chathuranga WAG, Seong Y, Bai L, Kim H, Shin JH, Chang YH, Lee JS.},
journal = {Front Immunol},
year = {2023},
doi = {10.3389/fimmu.2023.1242183},
pmid = {37881429}
}
@article{lin379812,
title = {Bioactive Components in Fruit Interact with Gut Microbes.},
author = {Jin Y, Chen L, Yu Y, Hussain M, Zhong H.},
journal = {Biology (Basel)},
year = {2023},
doi = {10.3390/biology12101333},
pmid = {37887043}
}
@article{lin379818,
title = {The Role of Dysbiotic Oral Microbiota in Cardiometabolic Diseases: A Narrative Review.},
author = {Le S, Cecchin-Albertoni C, Thomas C, Kemoun P, Minty M, Blasco-Baque V.},
journal = {Diagnostics (Basel)},
year = {2023},
doi = {10.3390/diagnostics13203184},
pmid = {37892006}
}
@article{lin379769,
title = {2-Fucosyllactose Metabolism by Bifidobacteria Promotes Lactobacilli Growth in Co-Culture.},
author = {Nogacka AM, Cuesta I, Gueimonde M, de Los Reyes-Gavilan CG.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11112659},
pmid = {38004671}
}
@article{lin379724,
title = {The Possible Preventative Role of Lactate- and Butyrate-Producing Bacteria in Colorectal Carcinogenesis.},
author = {Song CH, Kim N, Nam RH, Choi SI, Jang JY, Kim EH, Choi J, Choi Y, Yoon H, Lee SM, Seok YJ.},
journal = {Gut Liver},
year = {2024},
doi = {10.5009/gnl230385},
pmid = {38030382}
}
@article{lin379757,
title = {Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium.},
author = {Martin AJM, Serebrinsky-Duek K, Riquelme E, Saa PA, Garrido D.},
journal = {Microbiome Res Rep},
year = {2023},
doi = {10.20517/mrr.2023.10},
pmid = {38046822}
}
@article{lin380018,
title = {Substrate recognition mode of a glycoside hydrolase family 42 beta-galactosidase from Bifidobacterium longum subspecies infantis (BiBga42A) revealed by crystallographic and mutational analyses.},
author = {Gotoh A, Hidaka M, Sakurama H, Nishimoto M, Kitaoka M, Sakanaka M, Fushinobu S, Katayama T.},
journal = {Microbiome Res Rep},
year = {2023},
doi = {10.20517/mrr.2023.14},
pmid = {38046823}
}
@article{lin379809,
title = {Gut microbiomes of agropastoral children from the Adadle region of Ethiopia reflect their unique dietary habits.},
author = {Yersin S, Garneau JR, Schneeberger PHH, Osman KA, Cercamondi CI, Muhummed AM, Tschopp R, Zinsstag J, Vonaesch P.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-47748-8},
pmid = {38049420}
}
@article{lin380017,
title = {Bifidobacterium mechanisms of immune modulation and tolerance.},
author = {Gavzy SJ, Kensiski A, Lee ZL, Mongodin EF, Ma B, Bromberg JS.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2291164},
pmid = {38055306}
}
@article{lin379972,
title = {Lactiplantibacillus plantarum monolayer enhanced bactericidal action of carvacrol: biofilm inhibition of viable foodborne pathogens and spoilage microorganisms.},
author = {Poscente V, Di Gregorio L, Costanzo M, Nobili C, Bernini R, Garavaglia L, Bevivino A.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1296608},
pmid = {38075881}
}
@article{lin379749,
title = {Lymphocyte and neutrophil count combined with intestinal bacteria abundance predict the severity of COVID-19.},
author = {Chen L, Yin Z, Zhou D, Li X, Yu C, Luo C, Jin Y, Zhang L, Song J, Rasche L, Einsele H, Tu L, Zhou X, Bai T, Hou X.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.03027-23},
pmid = {38088542}
}
@article{lin379711,
title = {Draft genomes of 12 Bifidobacterium isolates from human IBD fecal samples.},
author = {Souza CE, Jacobson NE, An MA, Droit L, Vega AA, Rosales M, Mihindukulasuriya KA, Pastrana K, Handley SA, Parkes M, Rimmer J, Wang D, Dinsdale EA, A Edwards R, Segall AM.},
journal = {Microbiol Resour Announc},
year = {2024},
doi = {10.1128/mra.00130-23},
pmid = {38099679}
}
@article{lin379788,
title = {Longitudinal gut microbiota composition of South African and Nigerian infants in relation to tetanus vaccine responses.},
author = {Iwase SC, Osawe S, Happel A-U, Gray CM, Holmes SP, Blackburn JM, Abimiku A, Jaspan HB.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.03190-23},
pmid = {38230936}
}
@article{lin85099,
title = {Modulation of Designed Gut Bacterial Communities by Prebiotics and the Impact of Their Metabolites on Intestinal Cells.},
author = {Roupar D, Gonzalez A, Martins JT, Goncalves DA, Teixeira JA, Botelho C, Nobre C.},
journal = {Foods},
year = {2023},
doi = {10.3390/foods12234216},
pmid = {38231688}
}
@article{lin379767,
title = {Unveiling the connection between gut microbiome and metabolic health in individuals with chronic spinal cord injury.},
author = {Li J, Barnes S, Lefkowitz E, Yarar-Fisher C.},
journal = {Physiol Genomics},
year = {2024},
doi = {10.1152/physiolgenomics.00107.2023},
pmid = {38344780}
}
@article{lin379761,
title = {A survey into the utilization of probiotics and medicinal plants among individuals afflicted with gastrointestinal disorders in healthcare institutions in Saïda, Algeria.},
author = {Tazi LA, Benabdesslem Y, Amara S, Hachem K.},
journal = {Libyan J Med},
year = {2024},
doi = {10.1080/19932820.2024.2317492},
pmid = {38369815}
}
@article{lin379773,
title = {Galacto-oligosaccharide preconditioning improves metabolic activity and engraftment of Limosilactobacillus reuteri and stimulates osteoblastogenesis ex vivo.},
author = {De Bruyn F, Bonnet N, Baruchet M, Sabatier M, Breton I, Bourqui B, Jankovic I, Horcajada MN, Prioult G.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-54887-z},
pmid = {38383774}
}
@article{lin379784,
title = {In-depth characterization of a selection of gut commensal bacteria reveals their functional capacities to metabolize dietary carbohydrates with prebiotic potential.},
author = {Bedu-Ferrari C, Biscarrat P, Pepke F, Vati S, Chaudemanche C, Castelli F, Chollet C, Rue O, Hennequet-Antier C, Langella P, Cherbuy C.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.01401-23},
pmid = {38441031}
}
@article{lin379798,
title = {Short term supplementation with cranberry extract modulates gut microbiota in human and displays a bifidogenic effect.},
author = {Lessard-Lord J, Roussel C, Lupien-Meilleur J, Genereux P, Richard V, Guay V, Roy D, Desjardins Y.},
journal = {NPJ Biofilms Microbiomes},
year = {2024},
doi = {10.1038/s41522-024-00493-w},
pmid = {38448452}
}
@article{lin379738,
title = {An optimized culturomics strategy for isolation of human milk microbiota.},
author = {Wang F, Yu L, Ren Y, Zhang Q, He S, Zhao M, He Z, Gao Q, Chen J.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1272062},
pmid = {38495514}
}
@article{lin379960,
title = {Effect of Fungal and Fungal-Bacterial Tempe-Type Fermentation on the Bioactive Potential of Grass Pea Seeds and Flaxseed Oil Cake Mix.},
author = {Stodolak B, Grabacka M, Starzynska-Janiszewska A, Dulinski R.},
journal = {Int J Food Sci},
year = {2024},
doi = {10.1155/2024/5596798},
pmid = {38549663}
}
@article{lin379728,
title = {Sex Difference in the Effect of Bifidobacterium longum on Repeated Water Avoidance Stress-induced Gut Dysbiosis in Wistar Rats.},
author = {Choi SI, Kim N, Nam RH, Jang JY, Kim EH, Ha S, Kang K, Lee W, Shin CM, Lee DH.},
journal = {J Cancer Prev},
year = {2024},
doi = {10.15430/jcp.23.042},
pmid = {38567109}
}
@article{lin379726,
title = {Bacterial dysbiosis in newly diagnosed treatment naïve pediatric ulcerative colitis in Saudi Arabia.},
author = {El Mouzan M, Al Mofarreh M, Alsaleem B, Al Sarkhy A, Alanazi A, Khormi M, Almasoud A, Assiri A.},
journal = {Saudi J Gastroenterol},
year = {2025},
doi = {10.4103/sjg.sjg_66_24},
pmid = {38708883}
}
@article{lin379766,
title = {Intestinal Barrier Impairment Induced by Gut Microbiome and Its Metabolites in School-Age Children with Zinc Deficiency.},
author = {Chai X, Chen X, Yan T, Zhao Q, Hu B, Jiang Z, Guo W, Zhang Y.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16091289},
pmid = {38732540}
}
@article{lin379771,
title = {Comparative prebiotic potential of galacto- and fructo-oligosaccharides, native inulin, and acacia gum in Kenyan infant gut microbiota during iron supplementation.},
author = {Momo Cabrera P, Rachmuhl C, Derrien M, Bourdet-Sicard R, Lacroix C, Geirnaert A.},
journal = {ISME Commun},
year = {2024},
doi = {10.1093/ismeco/ycae033},
pmid = {38774131}
}
@article{lin379754,
title = {Transmission and Persistence of Infant Gut-Associated Bifidobacteria.},
author = {Hilliard MA, Sela DA.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12050879},
pmid = {38792709}
}
@article{lin379956,
title = {Postharvest Quality of Citrus medica L. (cv Liscia-Diamante) Fruit Stored at Different Temperatures: Volatile Profile and Antimicrobial Activity of Essential Oils.},
author = {Quintieri L, Palumbo M, Ricci I, Pace B, Caputo L, Adduci A, Luparelli A, Cefola M, Siano F, Cozzolino R.},
journal = {Foods},
year = {2024},
doi = {10.3390/foods13111596},
pmid = {38890825}
}
@article{lin379712,
title = {Gut microbiome and major depressive disorder: insights from two-sample Mendelian randomization.},
author = {Zhao Q, Baranova A, Cao H, Zhang F.},
journal = {BMC Psychiatry},
year = {2024},
doi = {10.1186/s12888-024-05942-6},
pmid = {38977973}
}
@article{lin379742,
title = {Gut microbiota differences in five-year-old children that were born preterm with a history of necrotizing enterocolitis: A pilot trial.},
author = {Magnusson A, Jabbari Shiadeh SM, Ardalan M, Swolin-Eide D, Elfvin A.},
journal = {iScience},
year = {2024},
doi = {10.1016/j.isci.2024.110325},
pmid = {39055941}
}
@article{lin379780,
title = {Distinct gut microbiomes in Thai patients with colorectal polyps.},
author = {Intarajak T, Udomchaiprasertkul W, Khoiri AN, Sutheeworapong S, Kusonmano K, Kittichotirat W, Thammarongtham C, Cheevadhanarak S.},
journal = {World J Gastroenterol},
year = {2024},
doi = {10.3748/wjg.v30.i27.3336},
pmid = {39086748}
}
@article{lin379745,
title = {Combining Bifidobacterium longum subsp. infantis and human milk oligosaccharides synergistically increases short chain fatty acid production ex vivo.},
author = {De Bruyn F, James K, Cottenet G, Dominick M, Katja J.},
journal = {Commun Biol},
year = {2024},
doi = {10.1038/s42003-024-06628-1},
pmid = {39098939}
}
@article{lin379791,
title = {The role of Bifidobacterium in longevity and the future of probiotics.},
author = {Ku S, Haque MA, Jang MJ, Ahn J, Choe D, Jeon JI, Park MS.},
journal = {Food Sci Biotechnol},
year = {2024},
doi = {10.1007/s10068-024-01631-y},
pmid = {39130652}
}
@article{lin85081,
title = {Genetic manipulations of nonmodel gut microbes.},
author = {Jin WB, Guo CJ.},
journal = {Imeta},
year = {2024},
doi = {10.1002/imt2.216},
pmid = {39135697}
}
@article{lin379758,
title = {Quercetin Increases Growth Performance and Decreases Incidence of Diarrhea and Mechanism of Action in Weaned Piglets.},
author = {Mao Y, Yang Q, Liu J, Fu Y, Zhou S, Liu J, Ying L, Li Y.},
journal = {Oxid Med Cell Longev},
year = {2024},
doi = {10.1155/2024/5632260},
pmid = {39139212}
}
@article{lin379717,
title = {Naringenin Promotes Gastrointestinal Motility in Mice by Impacting the SCF/c-Kit Pathway and Gut Microbiota.},
author = {Wu L, Niu Y, Ren B, Wang S, Song Y, Wang X, Zhao K, Yue Z, Li Y, Gao J.},
journal = {Foods},
year = {2024},
doi = {10.3390/foods13162520},
pmid = {39200447}
}
@article{lin379951,
title = {Harmony unveiled: Intricate the interplay of dietary factor, gut microbiota, and colorectal cancer-A narrative review.},
author = {Endale HT, Tesfaye W, Hassen FS, Asrat WB, Temesgen EY, Shibabaw YY, Asefa T.},
journal = {SAGE Open Med},
year = {2024},
doi = {10.1177/20503121241274724},
pmid = {39224896}
}
@article{lin379764,
title = {Exploring the Potential Probiotic Properties of Bifidobacterium breve DSM 32583-A Novel Strain Isolated from Human Milk.},
author = {Kujawska M, Neuhaus K, Huptas C, Jimenez E, Arboleya S, Schaubeck M, Hall LJ.},
journal = {Probiotics Antimicrob Proteins},
year = {2025},
doi = {10.1007/s12602-024-10346-9},
pmid = {39287748}
}
@article{lin379872,
title = {Microbial colonization programs are structured by breastfeeding and guide healthy respiratory development.},
author = {Shenhav L, Fehr K, Reyna ME, Petersen C, Dai DLY, Dai R, Breton V, Rossi L, Smieja M, Simons E, Silverman MA, Levy M, Bode L, Field CJ, Marshall JS, Moraes TJ, Mandhane PJ, Turvey SE, Subbarao P, Surette MG, Azad MB.},
journal = {Cell},
year = {2024},
doi = {10.1016/j.cell.2024.07.022},
pmid = {39303691}
}
@article{lin379807,
title = {Celiac disease gut microbiome studies in the third millennium: reviewing the findings and gaps of available literature.},
author = {Luz VCC, Pereira SG.},
journal = {Front Med Technol},
year = {2024},
doi = {10.3389/fmedt.2024.1413637},
pmid = {39355139}
}
@article{lin379727,
title = {Various steaming durations alter digestion, absorption, and fermentation by human gut microbiota outcomes of Polygonatum cyrtonema Hua polysaccharides.},
author = {Wu W, Wang Y, Yi P, Su X, Mi Y, Wu L, Tan Q.},
journal = {Front Nutr},
year = {2024},
doi = {10.3389/fnut.2024.1466781},
pmid = {39364149}
}
@article{lin379732,
title = {Disclosing alpha-lactalbumin impact on the intestinal and vaginal microbiota of women suffering from polycystic ovary syndrome.},
author = {Alessandri G, Mancabelli L, Fontana F, Lepore E, Forte G, Burratti M, Ventura M, Turroni F.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.14540},
pmid = {39364592}
}
@article{lin379701,
title = {Alterations in the gut microbiota in patients with long-term follow-up after pancreaticoduodenectomy and their association with postoperative fatty liver: A pilot study.},
author = {Uchida Y, Fujii T, Takahashi H, Nakaoka K, Funasaka K, Ohno E, Hirooka Y, Takahara T, Suda K, Tochio T.},
journal = {Pancreatology},
year = {2024},
doi = {10.1016/j.pan.2024.10.005},
pmid = {39419749}
}
@article{lin379785,
title = {Sugar Composition of Thai Desserts and Their Impact on the Gut Microbiome in Healthy Volunteers: A Randomized Controlled Trial.},
author = {Senaprom S, Namjud N, Ondee T, Bumrungpert A, Pongpirul K.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16223933},
pmid = {39599719}
}
@article{lin379957,
title = {Structure-dependent stimulation of gut bacteria by arabinoxylo-oligosaccharides (AXOS): a review.},
author = {Leschonski KP, Mortensen MS, Hansen LBS, Krogh KBRM, Kabel MA, Laursen MF.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2430419},
pmid = {39611305}
}
@article{lin379699,
title = {Structural analysis of gum arabic side chains from Acacia seyal released by bifidobacterial beta-arabino-oligosaccharide 3-O-beta-l-arabinopyranosyl-alpha-l-arabinofuranosidase.},
author = {Sasaki Y, Matsuo A, Hashiguchi M, Fujimura K, Koshino H, Tanaka K, Ito Y, Kitahara K, Ishiwata A, Fujita K.},
journal = {Carbohydr Polym},
year = {2025},
doi = {10.1016/j.carbpol.2024.122965},
pmid = {39643419}
}
@article{lin379718,
title = {Bone morphogenetic proteins, DNA methylation, and gut microbiota interaction in lumbar disc degeneration: A multi-omics Mendelian randomization study.},
author = {Li XY, Wang PY, Wang QJ, Wang DF, Wang SK, Wang Y, Zhu WG, Wang W, Kong C, Lu SB, Chen XL.},
journal = {JOR Spine},
year = {2024},
doi = {10.1002/jsp2.70027},
pmid = {39713086}
}
@article{lin379733,
title = {Diet-Gut Microbiota Relations: Critical Appraisal of Evidence From Studies Using Metagenomics.},
author = {Lotankar M, Houttu N, Mokkala K, Laitinen K.},
journal = {Nutr Rev},
year = {2025},
doi = {10.1093/nutrit/nuae192},
pmid = {39718602}
}
@article{lin379735,
title = {Gut microbiome and clinical and lifestyle host factors associated with recurrent positive RT-PCR for SARS-CoV-2.},
author = {Jimenez-Arroyo C, Molinero N, Sabater C, Margolles A, Terron-Camero LC, Andres-Leon E, Ramos M, Del Val M, Moreno-Arribas MV.},
journal = {Front Cell Infect Microbiol},
year = {2024},
doi = {10.3389/fcimb.2024.1494193},
pmid = {39744158}
}
@article{lin379753,
title = {Photocatalytic production and biological activity of D-arabino-1,4-lactone from D-fructose.},
author = {Usuki S, Patil PB, Jiang T, Taki N, Uesaka Y, Togawa H, Latthe SS, Liu S, Yamatoya K, Nakata K.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-024-84921-z},
pmid = {39799147}
}
@article{lin379759,
title = {Generation of novel prebiotic oligosaccharide pools from fiber drives biological insight in bacterial glycan metabolism.},
author = {Masarweh C, Maldonado-Gomez M, Paviani B, Bhattacharya M, Weng C-Y, Suarez C, Ehlers-Cheang S, Stacy A, Castillo J, Krishnakumar N, Kalanetra KA, Barile D, German JB, Lebrilla CB, Mills DA.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.02077-24},
pmid = {39912642}
}
@article{lin379697,
title = {Mendelian randomization analysis revealed a gut microbiota-eye axis in acute anterior uveitis.},
author = {Mi Y, Chen L, Liao N, Wan M.},
journal = {Eye (Lond)},
year = {2025},
doi = {10.1038/s41433-025-03715-3},
pmid = {39979613}
}
@article{lin379722,
title = {Remodeling of Gut Microbiome of Pakistani Expats in China After Ramadan Fasting.},
author = {Sakandar HA, Zhao F, Kang J, Khan MN, Sun Z.},
journal = {Food Sci Nutr},
year = {2025},
doi = {10.1002/fsn3.70019},
pmid = {40012570}
}
@article{lin379729,
title = {Complementary Feeding and Infant Gut Microbiota: A Narrative Review.},
author = {Noles DL, Matzeller KL, Frank DN, Krebs NF, Tang M.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17050743},
pmid = {40077613}
}
@article{lin379949,
title = {Complete genome sequence of the type strain Piscinibacterium candidicorallinum LMG 29480.},
author = {Deb D, Moe WM.},
journal = {Microbiol Resour Announc},
year = {2025},
doi = {10.1128/mra.00139-25},
pmid = {40192410}
}
@article{lin379747,
title = {Dietary polyunsaturated fatty acids effect on cecal microbiome profile of maturing broiler chicken.},
author = {Jadhav VV, Fasina YO, Harrison SH.},
journal = {Poult Sci},
year = {2025},
doi = {10.1016/j.psj.2025.105167},
pmid = {40315582}
}
@article{lin379874,
title = {The relationship between gut microbiome and human diseases: mechanisms, predisposing factors and potential intervention.},
author = {Shabani M, Ghoshehy A, Mottaghi AM, Chegini Z, Kerami A, Shariati A, Taati Moghadam M.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1516010},
pmid = {40395507}
}
@article{lin379713,
title = {Reduced abundance of Fusobacterium signifies cardiovascular benefits of sodium glucose cotransporter 2 inhibitor in type 2 diabetes: a single arm clinical trial.},
author = {Yang S, Deng J, Weng X, Ma Z, Lin N, Xiao Y, Zuo R, Hu Y, Zheng C, Zeng X, Lin Q, Hou K.},
journal = {Front Pharmacol},
year = {2025},
doi = {10.3389/fphar.2025.1600464},
pmid = {40406484}
}
@article{lin379772,
title = {Gene-trait matching among Bifidobacterium dentium strains reveals various glycan metabolism loci including a strain-specific fucosyllactose utilization cluster.},
author = {Catalano Gonzaga O, McKenna S, O'Neill I, Cotter PD, McAuliffe FM, Coffey A, van Sinderen D, Bottacini F.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1584694},
pmid = {40421466}
}
@article{lin379739,
title = {Enterotype-stratified gut microbial signatures in MASLD and cirrhosis based on integrated microbiome data.},
author = {Yuan H, Zhou J, Wu X, Wang S, Park S.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1568672},
pmid = {40444006}
}
@article{lin379744,
title = {Effect of herbal medicine Bojungikgi-tang on gut microbiome and symptoms in anorexic patients with atopic dermatitis: a randomized controlled trial.},
author = {Lee B, Ko MM, Ahn YM, Park HJ, Jung SY, Jung HA, Lee H, Kim PW, Choi Y, Han K, Shin S, Jung J.},
journal = {Front Pharmacol},
year = {2025},
doi = {10.3389/fphar.2025.1593477},
pmid = {40529484}
}
@article{lin379703,
title = {Association Between Gut Microbiota and Chronic Kidney Disease: A Two-Sample Mendelian Randomization Study in a Chinese Population.},
author = {Lin W, Liang Z, Fang J, Liu Y, Lei L, Lin J, Xia B, Zheng Z, Yuan J, Tang C.},
journal = {Biomedicines},
year = {2025},
doi = {10.3390/biomedicines13061397},
pmid = {40564116}
}
@article{lin379709,
title = {Makgeolli Lees as a Novel Prebiotic Candidate: Effects on Human Gut Microbiota and Metabolites.},
author = {Kim JH, Kim HR, Seong H, Han SH, Kim G, Choi Y, Han NS.},
journal = {J Microbiol Biotechnol},
year = {2025},
doi = {10.4014/jmb.2504.04020},
pmid = {40582765}
}
@article{lin379702,
title = {Chronic stress is associated with altered gut microbiota profile and relevant metabolites in adolescents.},
author = {Ying L, Yuhao W, Yafang H, Jiao L, Lina D, Qinze S, Chenghai Y, Shaoxiong Z, Yuexi G, Mingwang S, Zelin C, Chuangchuang W, Zihan G, Xin L, Lu M, Lei Z.},
journal = {BMC Microbiol},
year = {2025},
doi = {10.1186/s12866-025-04094-1},
pmid = {40629292}
}
@article{lin379752,
title = {Uptake of fucosylated type I human milk oligosaccharide blocks by Bifidobacterium longum subsp. infantis.},
author = {Ejby Hansen M, Sakanaka M, Jensen M, Sakanaka H, Pichler MJ, Maeda S, Franck Hovring J, Nakajima A, Kunstmann S, Nielsen TS, Peters GHJ, Slotboom DJ, Morth JP, Katayama T, Abou Hachem M.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.00368-25},
pmid = {40657901}
}
@article{lin379750,
title = {The dynamics of the gut microbiota in prediabetes during a four-year follow-up among European patients-an IMI-DIRECT prospective study.},
author = {Lyu L, Fan Y, Vogt JK, Clos-Garcia M, Bonnefond A, Pedersen HK, Dutta A, Koivula R, Sharma S, Allin KH, Brorsson C, Cederberg H, Chabanova E, De Masi F, Dermitzakis E, Elders PJ, Blom MT, Hollander M, Eriksen R, Forgie I, Frost G, Giordano GN, Grallert H, Haid M, Hansen TH, Jablonka B, Kokkola T, Mahajan A, Mari A, McDonald TJ, Musholt PB, Pavo I, Prehn C, Ridderstrale M, Ruetten H, Hart LM', Schwenk JM, Stankevic E, Thomsen HS, Vangipurapu J, Vestergaard H, Vinuela A, Walker M, Hansen T, Linneberg A, Nielsen HB, Brunak S, McCarthy MI, Froguel P, Adamski J, Franks PW, Laakso M, Beulens JWJ, Pearson E, Pedersen O.},
journal = {Genome Med},
year = {2025},
doi = {10.1186/s13073-025-01508-7},
pmid = {40665409}
}
@article{lin379737,
title = {Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria.},
author = {Arzamasov AA, Rodionov DA, Hibberd MC, Guruge JL, Kent JE, Kazanov MD, Leyn SA, Elane ML, Sejane K, Furst A, Bode L, Barratt MJ, Gordon JI, Osterman AL.},
journal = {Nat Microbiol},
year = {2025},
doi = {10.1038/s41564-025-02056-x},
pmid = {40670725}
}
@article{lin379952,
title = {Evaluation of probiotic potential, safety assessment and whole genome sequencing of Lactiplantibacillus plantarum strain MOVIN isolated from toddy sample.},
author = {Vijayaganapathi A, Mohanasrinivasan V.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1625659},
pmid = {40708923}
}
@article{lin379694,
title = {Distinct gut microbiota profiles and network properties in older Korean individuals with subjective cognitive decline, mild cognitive impairment, and Alzheimer's disease.},
author = {Son SJ, Wu X, Roh HW, Cho YH, Hong S, Nam YJ, Hong CH, Park S.},
journal = {Alzheimers Res Ther},
year = {2025},
doi = {10.1186/s13195-025-01820-9},
pmid = {40783766}
}
@article{lin379695,
title = {Gut microbiota and urine metabolomics signature in autism spectrum disorder children from Southern China.},
author = {Huang Z, Wei A, Yuan H, Huang S, Chen X, Han Y, Li X.},
journal = {BMC Pediatr},
year = {2025},
doi = {10.1186/s12887-025-05922-z},
pmid = {40797237}
}
@article{lin379696,
title = {Microbiome-metabolome generated bile acids gatekeep infliximab efficacy in Crohn's disease by licensing M1 suppression and Treg dominance.},
author = {Liu L, Liang L, Liang H, Wang M, Zhou W, Mai G, Yang C, Chen Y.},
journal = {J Adv Res},
year = {2025},
doi = {10.1016/j.jare.2025.08.017},
pmid = {40812589}
}
@article{lin379740,
title = {Dual-approach analysis of gut microbiome in patients with type 1 diabetes and diabetic kidney disease.},
author = {Bunka L, Rozenberga M, Silamikelis I, Saksis R, Birzniece L, Megnis K, Fedulovs A, Pahirko L, Zalizko P, Krustins E, Klovins J, Sokolovska J, Elbere I.},
journal = {Ann Med},
year = {2025},
doi = {10.1080/07853890.2025.2531254},
pmid = {40859872}
}
@article{lin379725,
title = {Seeding and feeding: nutrition and birth-associated exposures shape gut microbiome assembly in breastfed infants.},
author = {Stinson LF, Norrish I, Mhembere F, Cheema AS, Mullally CA, Payne MS, Geddes DT.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2557981},
pmid = {40948418}
}
@article{lin379751,
title = {Scarless gene disruption enabled by a dual-plasmid knockout platform in a clinical infant-derived Bifidobacterium breve strain.},
author = {Gao Z, Feng L.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1653505},
pmid = {41001056}
}
@article{lin379719,
title = {Gastrointestinal Tolerance and Gut Microbiota Modulation of Encapsulated and Free Forms of Lactobacillus acidophilus and Bifidobacterium animalis subsp. lactis.},
author = {Kim G, Seong H, Han SH, Kim HR, Kim SH, Ku HJ, Han HJ, Kim CH, Han NS.},
journal = {J Microbiol Biotechnol},
year = {2025},
doi = {10.4014/jmb.2506.06028},
pmid = {41016814}
}
@article{lin379953,
title = {Bioactive Potential of Wild Plants from Gardunha Mountain: Phytochemical Characterization and Biological Activities.},
author = {Coimbra A, Gallardo E, Luis A, Gaspar PD, Ferreira S, Duarte AP.},
journal = {Molecules},
year = {2025},
doi = {10.3390/molecules30193876},
pmid = {41097297}
}
@article{lin379706,
title = {Intermittent MDMA Attenuates Ovariectomy-induced Bone Loss via a Gut Microbiota-Bone Axis.},
author = {Wan X, Eguchi A, Murayama R, Mori C, Hashimoto K.},
journal = {Clin Psychopharmacol Neurosci},
year = {2025},
doi = {10.9758/cpn.25.1309},
pmid = {41139601}
}
@article{lin379704,
title = {A Metagenomics Approach to Frailty in Patients With Cirrhosis Undergoing a Multifactorial Intervention.},
author = {Vega-Abellaneda S, Roman E, Soler Z, Ortiz MA, Rossi G, Biagini L, Sanchez E, Pons-Tarin M, Laghi L, Mengucci C, Kaur N, Poca M, Cuyas B, Serrano-Gomez G, Alvarado E, Manichanh C, Soriano G.},
journal = {Liver Int},
year = {2025},
doi = {10.1111/liv.70418},
pmid = {41174950}
}
@article{lin379708,
title = {Postoperative Gut Microbiota Changes after Colorectal Cancer Surgery: A Comparative Study Based on Resection Sites.},
author = {Hattori Y, Fujii T, Tochio T, Kumamoto T, Hiro J, Matsuoka H, Masumori K, Funasaka K, Ohno E, Hirooka Y, Suda K, Otsuka K.},
journal = {J Anus Rectum Colon},
year = {2025},
doi = {10.23922/jarc.2025-048},
pmid = {41180801}
}
@article{lin379731,
title = {Harnessing Lactobacillus-derived SCFAs for food and health: Pathways, genes, and functional implications.},
author = {Nami Y, Shaghaghi Ranjbar M, Modarres Aval M, Haghshenas B.},
journal = {Curr Res Microb Sci},
year = {2025},
doi = {10.1016/j.crmicr.2025.100496},
pmid = {41230178}
}
@article{lin379700,
title = {The causal relationship between gut microbiota and lipid metabolism in heart failure: A 2-sample Mendelian randomization study.},
author = {Gan J, Hu N, Jiao J, Li S, Li J, Zhang Z, Xu L, Li C, Li J, Yue G.},
journal = {Medicine (Baltimore)},
year = {2025},
doi = {10.1097/md.0000000000045087},
pmid = {41261579}
}
@article{lin379720,
title = {B. adolescentis alleviates inflammation and suppresses PGE2 through remodling gut microbiota to attenuate pulmonary fibrosis in aging mice.},
author = {Ni J, Wang F, Wu Y, Shen J, Zhou Z, Xu L, Lou Z, Shen Y, Qiu B, Xiang Q, Yin P, Chen Y, Li L.},
journal = {NPJ Sci Food},
year = {2025},
doi = {10.1038/s41538-025-00613-6},
pmid = {41285812}
}
@article{lin379734,
title = {Metagenomics Investigation on Baby Diaper Area Microbiome and Its Association with Skin pH and Dermatitis in the Diapered Area.},
author = {Hu P, Carr AN, Parlov M, Swift D, Tiesman JP, Ramji N, Schoch JJ, Teufel AG.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13112632},
pmid = {41304316}
}