@article{lin83751,
title = {Recent advances in the science of human milk oligosaccharides},
author = {Urashima T, Ajisaka K, Ujihara T, Nakazaki E.},
journal = {BBA Adv},
year = {2025},
}
@article{lin4823,
title = {High-affinity oxygen uptake by Bifidobacterium bifidum.},
author = {Cox RP, Marling N},
journal = {Antonie Van Leeuwenhoek},
year = {1992},
doi = {10.1007/BF00572597},
pmid = {1285646}
}
@article{lin4820,
title = {Characterization of the lactose transport system in the strain Bifidobacterium bifidum DSM 20082.},
author = {Krzewinski F, Brassart C, Gavini F, Bouquelet S},
journal = {Curr Microbiol},
year = {1996},
doi = {10.1007/s002849900054},
pmid = {8640105}
}
@article{lin4817,
title = {Glucose and galactose transport in Bifidobacterium bifidum DSM 20082.},
author = {Krzewinski F, Brassart C, Gavini F, Bouquelet S},
journal = {Curr Microbiol},
year = {1997},
doi = {10.1007/s002849900234},
pmid = {9236301}
}
@article{lin4815,
title = {Beta-1,3-galactosyl-N-acetylhexosamine phosphorylase from Bifidobacterium bifidum DSM 20082: characterization, partial purification and relation to mucin degradation.},
author = {Derensy-Dron D, Krzewinski F, Brassart C, Bouquelet S},
journal = {Biotechnol Appl Biochem},
year = {1999},
pmid = {9889079}
}
@article{lin4814,
title = {Complementary effects of bifidogenic growth stimulators and ammonium sulfate in natural rubber serum powder on Bifidobacterium bifidum.},
author = {Etoh S, Sonomoto K, Ishizaki A},
journal = {Biosci Biotechnol Biochem},
year = {1999},
doi = {10.1271/bbb.63.627},
pmid = {10361675}
}
@article{lin83725,
title = {A new selective medium for Bifidobacterium spp.},
author = {Nebra Y, Blanch AR.},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/aem.65.11.5173-5176.1999},
pmid = {10543841}
}
@article{lin4812,
title = {Purification and identification of a growth-stimulating peptide for Bifidobacterium bifidum from natural rubber serum powder.},
author = {Etoh S, Asamura K, Obu A, Sonomoto K, Ishizaki A},
journal = {Biosci Biotechnol Biochem},
year = {2000},
doi = {10.1271/bbb.64.2083},
pmid = {11129579}
}
@article{lin83724,
title = {Novel putative galactose operon involving lacto-N-biose phosphorylase in Bifidobacterium longum.},
author = {Kitaoka M, Tian J, Nishimoto M.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.6.3158-3162.2005},
pmid = {15933016}
}
@article{lin4802,
title = {Identification of the putative proton donor residue of lacto-N-biose phosphorylase (EC 2.4.1.211).},
author = {Nishimoto M, Kitaoka M},
journal = {Biosci Biotechnol Biochem},
year = {2007},
doi = {10.1271/bbb.70064},
pmid = {17587697}
}
@article{lin83728,
title = {Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly.},
author = {Collado MC, Derrien M, Isolauri E, de Vos WM, Salminen S.},
journal = {Appl Environ Microbiol},
year = {2007},
doi = {10.1128/aem.01477-07},
pmid = {17933936}
}
@article{lin4800,
title = {Characterisation of glutamine fructose-6-phosphate amidotransferase (EC 2.6.1.16) and N-acetylglucosamine metabolism in Bifidobacterium.},
author = {Foley S, Stolarczyk E, Mouni F, Brassart C, Vidal O, Aissi E, Bouquelet S, Krzewinski F},
journal = {Arch Microbiol},
year = {2007},
doi = {10.1007/s00203-007-0307-9},
pmid = {17943273}
}
@article{lin4798,
title = {Bifidobacterium bifidum lacto-N-biosidase, a critical enzyme for the degradation of human milk oligosaccharides with a type 1 structure.},
author = {Wada J, Ando T, Kiyohara M, Ashida H, Kitaoka M, Yamaguchi M, Kumagai H, Katayama T, Yamamoto K},
journal = {Appl Environ Microbiol},
year = {2008},
doi = {10.1128/AEM.00149-08},
pmid = {18469123}
}
@article{lin83723,
title = {Transport of glucose by Bifidobacterium animalis subsp. lactis occurs via facilitated diffusion.},
author = {Briczinski EP, Phillips AT, Roberts RF.},
journal = {Appl Environ Microbiol},
year = {2008},
doi = {10.1128/aem.01280-08},
pmid = {18791026}
}
@article{lin83722,
title = {In vitro kinetic analysis of fermentation of prebiotic inulin-type fructans by Bifidobacterium species reveals four different phenotypes.},
author = {Falony G, Lazidou K, Verschaeren A, Weckx S, Maes D, De Vuyst L.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.01488-08},
pmid = {19011052}
}
@article{lin4796,
title = {Effect of Bifidobacterium bifidum DSM 20082 cytoplasmic fraction on human immune cells.},
author = {Mouni F, Aissi E, Hernandez J, Gorocica P, Bouquelet S, Zenteno E, Lascurain R, Garfias Y},
journal = {Immunol Invest},
year = {2009},
doi = {10.1080/08820130802608303},
pmid = {19172489}
}
@article{lin83730,
title = {Different fecal microbiotas and volatile organic compounds in treated and untreated children with celiac disease.},
author = {Di Cagno R, Rizzello CG, Gagliardi F, Ricciuti P, Ndagijimana M, Francavilla R, Guerzoni ME, Crecchio C, Gobbetti M, De Angelis M.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.02793-08},
pmid = {19376912}
}
@article{lin4795,
title = {Two distinct alpha-L-fucosidases from Bifidobacterium bifidum are essential for the utilization of fucosylated milk oligosaccharides and glycoconjugates.},
author = {Ashida H, Miyake A, Kiyohara M, Wada J, Yoshida E, Kumagai H, Katayama T, Yamamoto K},
journal = {Glycobiology},
year = {2009},
doi = {10.1093/glycob/cwp082},
pmid = {19520709}
}
@article{lin83720,
title = {Highly efficient chemoenzymatic synthesis of beta1-3-linked galactosides.},
author = {Yu H, Thon V, Lau K, Cai L, Chen Y, Mu S, Li Y, Wang PG, Chen X.},
journal = {Chem Commun (Camb)},
year = {2010},
doi = {10.1039/c0cc02850a},
pmid = {20830443}
}
@article{lin4794,
title = {An exo-alpha-sialidase from bifidobacteria involved in the degradation of sialyloligosaccharides in human milk and intestinal glycoconjugates.},
author = {Kiyohara M, Tanigawa K, Chaiwangsri T, Katayama T, Ashida H, Yamamoto K},
journal = {Glycobiology},
year = {2010},
doi = {10.1093/glycob/cwq175},
pmid = {21036948}
}
@article{lin83779,
title = {A versatile and scalable strategy for glycoprofiling bifidobacterial consumption of human milk oligosaccharides.},
author = {Locascio RG, Ninonuevo MR, Kronewitter SR, Freeman SL, German JB, Lebrilla CB, Mills DA.},
journal = {Microb Biotechnol},
year = {2009},
doi = {10.1111/j.1751-7915.2008.00072.x},
pmid = {21261928}
}
@article{lin4793,
title = {Physiology of consumption of human milk oligosaccharides by infant gut-associated bifidobacteria.},
author = {Asakuma S, Hatakeyama E, Urashima T, Yoshida E, Katayama T, Yamamoto K, Kumagai H, Ashida H, Hirose J, Kitaoka M},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.M111.248138},
pmid = {21832085}
}
@article{lin83732,
title = {Duodenal and faecal microbiota of celiac children: molecular, phenotype and metabolome characterization.},
author = {Di Cagno R, De Angelis M, De Pasquale I, Ndagijimana M, Vernocchi P, Ricciuti P, Gagliardi F, Laghi L, Crecchio C, Guerzoni ME, Gobbetti M, Francavilla R.},
journal = {BMC Microbiol},
year = {2011},
doi = {10.1186/1471-2180-11-219},
pmid = {21970810}
}
@article{lin4792,
title = {alpha-N-acetylgalactosaminidase from infant-associated bifidobacteria belonging to novel glycoside hydrolase family 129 is implicated in alternative mucin degradation pathway.},
author = {Kiyohara M, Nakatomi T, Kurihara S, Fushinobu S, Suzuki H, Tanaka T, Shoda SI, Kitaoka M, Katayama T, Yamamoto K, Ashida H},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.M111.277384},
pmid = {22090027}
}
@article{lin83731,
title = {Fructose uptake in Bifidobacterium longum NCC2705 is mediated by an ATP-binding cassette transporter.},
author = {Wei X, Guo Y, Shao C, Sun Z, Zhurina D, Liu D, Liu W, Zou D, Jiang Z, Wang X, Zhao J, Shang W, Li X, Liao X, Huang L, Riedel CU, Yuan J.},
journal = {J Biol Chem},
year = {2012},
doi = {10.1074/jbc.m111.266213},
pmid = {22102285}
}
@article{lin83781,
title = {Release and utilization of N-acetyl-D-glucosamine from human milk oligosaccharides by Bifidobacterium longum subsp. infantis.},
author = {Garrido D, Ruiz-Moyano S, Mills DA.},
journal = {Anaerobe},
year = {2012},
doi = {10.1016/j.anaerobe.2012.04.012},
pmid = {22579845}
}
@article{lin4788,
title = {Bifidobacterial alpha-galactosidase with unique carbohydrate-binding module specifically acts on blood group B antigen.},
author = {Wakinaka T, Kiyohara M, Kurihara S, Hirata A, Chaiwangsri T, Ohnuma T, Fukamizo T, Katayama T, Ashida H, Yamamoto K},
journal = {Glycobiology},
year = {2012},
doi = {10.1093/glycob/cws142},
pmid = {23089618}
}
@article{lin4787,
title = {Hypolipidemic effects of lactic acid bacteria fermented cereal in rats.},
author = {Banjoko IO, Adeyanju MM, Ademuyiwa O, Adebawo OO, Olalere RA, Kolawole MO, Adegbola IA, Adesanmi TA, Oladunjoye TO, Ogunnowo AA, Shorinola AA, Daropale O, Babatope EB, Osibogun AO, Ogunfowokan DT, Jentegbe TA, Apelehin TG, Ogunnowo O, Olokodana O, Fetuga FY, Omitola M, Okafor LA, Ebohon CL, Ita JO, Disu KA, Ogherebe O, Eriobu SU, Bakare AA},
journal = {Lipids Health Dis},
year = {2012},
doi = {10.1186/1476-511X-11-170},
pmid = {23231860}
}
@article{lin83727,
title = {Exo- and endoglycosidases revisited.},
author = {Kobata A.},
journal = {Proc Jpn Acad Ser B Phys Biol Sci},
year = {2013},
doi = {10.2183/pjab.89.97},
pmid = {23474886}
}
@article{lin4785,
title = {Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum.},
author = {Ito T, Katayama T, Hattie M, Sakurama H, Wada J, Suzuki R, Ashida H, Wakagi T, Yamamoto K, Stubbs KA, Fushinobu S},
journal = {J Biol Chem},
year = {2013},
doi = {10.1074/jbc.M112.420109},
pmid = {23479733}
}
@article{lin83765,
title = {Metabolism of four alpha-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003.},
author = {O'Connell KJ, O'Connell Motherway M, O'Callaghan J, Fitzgerald GF, Ross RP, Ventura M, Stanton C, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.01775-13},
pmid = {23913435}
}
@article{lin83774,
title = {Protein-Linked Glycan Degradation in Infants Fed Human Milk.},
author = {Dallas DC, Sela D, Underwood MA, German JB, Lebrilla C.},
journal = {J Glycomics Lipidomics},
year = {2012},
doi = {10.4172/2153-0637.s1-002},
pmid = {24533224}
}
@article{lin83780,
title = {Technological advances in bifidobacterial molecular genetics: application to functional genomics and medical treatments.},
author = {Fukiya S, Hirayama Y, Sakanaka M, Kano Y, Yokota A.},
journal = {Biosci Microbiota Food Health},
year = {2012},
doi = {10.12938/bmfh.31.15},
pmid = {24936345}
}
@article{lin4780,
title = {alpha-N-Acetylglucosaminidase from Bifidobacterium bifidum specifically hydrolyzes alpha-linked N-acetylglucosamine at nonreducing terminus of O-glycan on gastric mucin.},
author = {Shimada Y, Watanabe Y, Wakinaka T, Funeno Y, Kubota M, Chaiwangsri T, Kurihara S, Yamamoto K, Katayama T, Ashida H},
journal = {Appl Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s00253-014-6201-x},
pmid = {25381911}
}
@article{lin83729,
title = {The impact of the milk glycobiome on the neonate gut microbiota.},
author = {Pacheco AR, Barile D, Underwood MA, Mills DA.},
journal = {Annu Rev Anim Biosci},
year = {2015},
doi = {10.1146/annurev-animal-022114-111112},
pmid = {25387230}
}
@article{lin83770,
title = {Cross-feeding by Bifidobacterium breve UCC2003 during co-cultivation with Bifidobacterium bifidum PRL2010 in a mucin-based medium.},
author = {Egan M, Motherway MO, Kilcoyne M, Kane M, Joshi L, Ventura M, van Sinderen D.},
journal = {BMC Microbiol},
year = {2014},
doi = {10.1186/s12866-014-0282-7},
pmid = {25420416}
}
@article{lin83773,
title = {Mucin glycan foraging in the human gut microbiome.},
author = {Tailford LE, Crost EH, Kavanaugh D, Juge N.},
journal = {Front Genet},
year = {2015},
doi = {10.3389/fgene.2015.00081},
pmid = {25852737}
}
@article{lin83767,
title = {Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria.},
author = {Garrido D, Ruiz-Moyano S, Lemay DG, Sela DA, German JB, Mills DA.},
journal = {Sci Rep},
year = {2015},
doi = {10.1038/srep13517},
pmid = {26337101}
}
@article{lin83777,
title = {In Vitro Fermentation of caprine milk oligosaccharides by bifidobacteria isolated from breast-fed infants.},
author = {Thum C, Roy NC, McNabb WC, Otter DE, Cookson AL.},
journal = {Gut Microbes},
year = {2015},
doi = {10.1080/19490976.2015.1105425},
pmid = {26587678}
}
@article{lin83775,
title = {Novel alpha-L-Fucosidases from a Soil Metagenome for Production of Fucosylated Human Milk Oligosaccharides.},
author = {Lezyk M, Jers C, Kjaerulff L, Gotfredsen CH, Mikkelsen MD, Mikkelsen JD.},
journal = {PLoS One},
year = {2016},
doi = {10.1371/journal.pone.0147438},
pmid = {26800369}
}
@article{lin83772,
title = {Sialidases from gut bacteria: a mini-review.},
author = {Juge N, Tailford L, Owen CD.},
journal = {Biochem Soc Trans},
year = {2016},
doi = {10.1042/bst20150226},
pmid = {26862202}
}
@article{lin4771,
title = {Efficient and Regioselective Synthesis of beta-GalNAc/GlcNAc-Lactose by a Bifunctional Transglycosylating beta-N-Acetylhexosaminidase from Bifidobacterium bifidum.},
author = {Chen X, Xu L, Jin L, Sun B, Gu G, Lu L, Xiao M},
journal = {Appl Environ Microbiol},
year = {2016},
doi = {10.1128/AEM.01325-16},
pmid = {27422836}
}
@article{lin83771,
title = {Proteinaceous Molecules Mediating Bifidobacterium-Host Interactions.},
author = {Ruiz L, Delgado S, Ruas-Madiedo P, Margolles A, Sanchez B.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.01193},
pmid = {27536282}
}
@article{lin83721,
title = {Fucosyllactose and L-fucose utilization of infant Bifidobacterium longum and Bifidobacterium kashiwanohense.},
author = {Bunesova V, Lacroix C, Schwab C.},
journal = {BMC Microbiol},
year = {2016},
doi = {10.1186/s12866-016-0867-4},
pmid = {27782805}
}
@article{lin4770,
title = {Application study of 1,2-alpha-l-fucosynthase: introduction of Fucalpha1-2Gal disaccharide structures on N-glycan, ganglioside, and xyloglucan oligosaccharide.},
author = {Sugiyama Y, Katoh T, Honda Y, Gotoh A, Ashida H, Kurihara S, Yamamoto K, Katayama T},
journal = {Biosci Biotechnol Biochem},
year = {2016},
doi = {10.1080/09168451.2016.1254532},
pmid = {27832720}
}
@article{lin83726,
title = {Trophic Interactions of Infant Bifidobacteria and Eubacterium hallii during L-Fucose and Fucosyllactose Degradation.},
author = {Schwab C, Ruscheweyh HJ, Bunesova V, Pham VT, Beerenwinkel N, Lacroix C.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.00095},
pmid = {28194144}
}
@article{lin83756,
title = {The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors.},
author = {Sato M, Liebschner D, Yamada Y, Matsugaki N, Arakawa T, Wills SS, Hattie M, Stubbs KA, Ito T, Senda T, Ashida H, Fushinobu S.},
journal = {J Biol Chem},
year = {2017},
doi = {10.1074/jbc.m117.777391},
pmid = {28546425}
}
@article{lin83783,
title = {VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.},
author = {Ren J, Ahlgren NA, Lu YY, Fuhrman JA, Sun F.},
journal = {Microbiome},
year = {2017},
doi = {10.1186/s40168-017-0283-5},
pmid = {28683828}
}
@article{lin376474,
title = {Designing primers and evaluation of the efficiency of propidium monoazide - Quantitative polymerase chain reaction for counting the viable cells of Lactobacillus gasseri and Lactobacillus salivarius.},
author = {Lai CH, Wu SR, Pang JC, Ramireddy L, Chiang YC, Lin CK, Tsen HY.},
journal = {J Food Drug Anal},
year = {2017},
doi = {10.1016/j.jfda.2016.10.004},
pmid = {28911639}
}
@article{lin83717,
title = {Evaluation of the prebiotic effects of citrus pectin hydrolysate.},
author = {Ho YY, Lin CM, Wu MC.},
journal = {J Food Drug Anal},
year = {2017},
doi = {10.1016/j.jfda.2016.11.014},
pmid = {28911641}
}
@article{lin83719,
title = {Complementary Mechanisms for Degradation of Inulin-Type Fructans and Arabinoxylan Oligosaccharides among Bifidobacterial Strains Suggest Bacterial Cooperation.},
author = {Riviere A, Selak M, Geirnaert A, Van den Abbeele P, De Vuyst L.},
journal = {Appl Environ Microbiol},
year = {2018},
doi = {10.1128/aem.02893-17},
pmid = {29500265}
}
@article{lin4765,
title = {Enzymatic Synthesis of 6'-Sialyllactose, a Dominant Sialylated Human Milk Oligosaccharide, by a Novel exo-alpha-Sialidase from Bacteroides fragilis NCTC9343.},
author = {Guo L, Chen X, Xu L, Xiao M, Lu L},
journal = {Appl Environ Microbiol},
year = {2018},
doi = {10.1128/AEM.00071-18},
pmid = {29678922}
}
@article{lin376471,
title = {Safety Evaluations of Bifidobacterium bifidum BGN4 and Bifidobacterium longum BORI.},
author = {Kim MJ, Ku S, Kim SY, Lee HH, Jin H, Kang S, Li R, Johnston TV, Park MS, Ji GE.},
journal = {Int J Mol Sci},
year = {2018},
doi = {10.3390/ijms19051422},
pmid = {29747442}
}
@article{lin83759,
title = {An F-type lectin domain directs the activity of Streptosporangium roseum alpha-l-fucosidase.},
author = {Bishnoi R, Mahajan S, Ramya TNC.},
journal = {Glycobiology},
year = {2018},
doi = {10.1093/glycob/cwy079},
pmid = {30169639}
}
@article{lin83768,
title = {Utilization of Host-Derived Glycans by Intestinal Lactobacillus and Bifidobacterium Species.},
author = {Zuniga M, Monedero V, Yebra MJ.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01917},
pmid = {30177920}
}
@article{lin83778,
title = {Characterization of GH2 and GH42 beta-galactosidases derived from bifidobacterial infant isolates.},
author = {Ambrogi V, Bottacini F, O'Sullivan J, O'Connell Motherway M, Linqiu C, Schoemaker B, Schoterman M, van Sinderen D.},
journal = {AMB Express},
year = {2019},
doi = {10.1186/s13568-019-0735-3},
pmid = {30661116}
}
@article{lin56765,
title = {The antioxidant and prebiotic properties of lactobionic acid.},
author = {Goderska K},
journal = {Appl Microbiol Biotechnol},
year = {2019},
doi = {10.1007/s00253-019-09754-7},
pmid = {30919101}
}
@article{lin83763,
title = {Synthesis of Fucosyl-Oligosaccharides Using alpha-l-Fucosidase from Lactobacillus rhamnosus GG.},
author = {Escamilla-Lozano Y, Guzman-Rodriguez F, Alatorre-Santamaria S, Garcia-Garibay M, Gomez-Ruiz L, Rodriguez-Serrano G, Cruz-Guerrero A.},
journal = {Molecules},
year = {2019},
doi = {10.3390/molecules24132402},
pmid = {31261855}
}
@article{lin4757,
title = {Converting a beta-N-acetylhexosaminidase into two trans-beta-N-acetylhexosaminidases by domain-targeted mutagenesis.},
author = {Chen X, Jin L, Jiang X, Guo L, Gu G, Xu L, Lu L, Wang F, Xiao M},
journal = {Appl Microbiol Biotechnol},
year = {2019},
doi = {10.1007/s00253-019-10253-y},
pmid = {31822984}
}
@article{lin83718,
title = {Probiotic Lactobacillus and Bifidobacterium strains possess safety characteristics, antiviral activities and host adherence factors revealed by genome mining.},
author = {Abdelhamid AG, El-Masry SS, El-Dougdoug NK, El-Dougdoug NK.},
journal = {EPMA J},
year = {2019},
doi = {10.1007/s13167-019-00184-z},
pmid = {31832110}
}
@article{lin83754,
title = {Varied Pathways of Infant Gut-Associated Bifidobacterium to Assimilate Human Milk Oligosaccharides: Prevalence of the Gene Set and Its Correlation with Bifidobacteria-Rich Microbiota Formation.},
author = {Sakanaka M, Gotoh A, Yoshida K, Odamaki T, Koguchi H, Xiao JZ, Kitaoka M, Katayama T.},
journal = {Nutrients},
year = {2019},
doi = {10.3390/nu12010071},
pmid = {31888048}
}
@article{lin83745,
title = {Enzymatic Adaptation of Bifidobacterium bifidum to Host Glycans, Viewed from Glycoside Hydrolyases and Carbohydrate-Binding Modules.},
author = {Katoh T, Ojima MN, Sakanaka M, Ashida H, Gotoh A, Katayama T.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8040481},
pmid = {32231096}
}
@article{lin83761,
title = {A novel bacterial beta-N-acetyl glucosaminidase from Chitinolyticbacter meiyuanensis possessing transglycosylation and reverse hydrolysis activities.},
author = {Zhang A, Mo X, Zhou N, Wang Y, Wei G, Chen J, Chen K, Ouyang P.},
journal = {Biotechnol Biofuels},
year = {2020},
doi = {10.1186/s13068-020-01754-4},
pmid = {32612678}
}
@article{lin4753,
title = {Bifidobacterium bifidum Suppresses Gut Inflammation Caused by Repeated Antibiotic Disturbance Without Recovering Gut Microbiome Diversity in Mice.},
author = {Ojima MN, Gotoh A, Takada H, Odamaki T, Xiao JZ, Katoh T, Katayama T},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01349},
pmid = {32625197}
}
@article{lin83713,
title = {Potential Health Benefits of Ropy Exopolysaccharides Produced by Lactobacillus plantarum.},
author = {Yilmaz T, Simsek O.},
journal = {Molecules},
year = {2020},
doi = {10.3390/molecules25143293},
pmid = {32698491}
}
@article{lin376469,
title = {Development of Real-Time PCR Assay to Specifically Detect 22 Bifidobacterium Species and Subspecies Using Comparative Genomics.},
author = {Kim HB, Kim E, Yang SM, Lee S, Kim MJ, Kim HY.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.02087},
pmid = {33013760}
}
@article{lin83753,
title = {Molecular Insights Into O-Linked Glycan Utilization by Gut Microbes.},
author = {Gonzalez-Morelo KJ, Vega-Sagardia M, Garrido D.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.591568},
pmid = {33224127}
}
@article{lin83758,
title = {A Bacterial beta1-3-Galactosyltransferase Enables Multigram-Scale Synthesis of Human Milk Lacto-N-tetraose (LNT) and Its Fucosides.},
author = {McArthur JB, Yu H, Chen X.},
journal = {ACS Catal},
year = {2019},
doi = {10.1021/acscatal.9b03990},
pmid = {33408950}
}
@article{lin4751,
title = {Influence of fucosidase-producing bifidobacteria on the HBGA antigenicity of oyster digestive tissue and the associated norovirus binding.},
author = {Eshaghi Gorji M, Tan MTH, Li D},
journal = {Int J Food Microbiol},
year = {2021},
doi = {10.1016/j.ijfoodmicro.2021.109058},
pmid = {33461001}
}
@article{lin83744,
title = {Structure and evolution of the bifidobacterial carbohydrate metabolism proteins and enzymes.},
author = {Fushinobu S, Abou Hachem M.},
journal = {Biochem Soc Trans},
year = {2021},
doi = {10.1042/bst20200163},
pmid = {33666221}
}
@article{lin83714,
title = {In Vitro Prebiotic and Anti-Colon Cancer Activities of Agar-Derived Sugars from Red Seaweeds.},
author = {Yun EJ, Yu S, Kim YA, Liu JJ, Kang NJ, Jin YS, Kim KH.},
journal = {Mar Drugs},
year = {2021},
doi = {10.3390/md19040213},
pmid = {33921308}
}
@article{lin83769,
title = {Slimy partners: the mucus barrier and gut microbiome in ulcerative colitis.},
author = {Fang J, Wang H, Zhou Y, Zhang H, Zhou H, Zhang X.},
journal = {Exp Mol Med},
year = {2021},
doi = {10.1038/s12276-021-00617-8},
pmid = {34002011}
}
@article{lin83747,
title = {A Novel GH Family 20 beta-N-acetylhexosaminidase With Both Chitosanase and Chitinase Activity From Aspergillus oryzae.},
author = {Qu T, Zhang C, Qin Z, Fan L, Jiang L, Zhao L.},
journal = {Front Mol Biosci},
year = {2021},
doi = {10.3389/fmolb.2021.684086},
pmid = {34095233}
}
@article{lin4749,
title = {Evaluation of Microencapsulated Synbiotic Preparations Containing Lactobionic Acid.},
author = {Goderska K, Kozlowski P},
journal = {Appl Biochem Biotechnol},
year = {2021},
doi = {10.1007/s12010-021-03622-9},
pmid = {34282567}
}
@article{lin83757,
title = {The Interaction Between Viruses and Intestinal Microbiota: A Review.},
author = {Lv Z, Xiong D, Shi J, Long M, Chen Z.},
journal = {Curr Microbiol},
year = {2021},
doi = {10.1007/s00284-021-02623-5},
pmid = {34350485}
}
@article{lin83739,
title = {Sialylated O -Glycans from Hen Egg White Ovomucin are Decomposed by Mucin-degrading Gut Microbes.},
author = {Takada H, Katoh T, Katayama T.},
journal = {J Appl Glycosci (1999)},
year = {2020},
doi = {10.5458/jag.jag.jag-2019_0020},
pmid = {34354526}
}
@article{lin83762,
title = {1,6-alpha-L-Fucosidases from Bifidobacterium longum subsp. infantis ATCC 15697 Involved in the Degradation of Core-fucosylated N -Glycan.},
author = {Ashida H, Fujimoto T, Kurihara S, Nakamura M, Komeno M, Huang Y, Katayama T, Kinoshita T, Takegawa K.},
journal = {J Appl Glycosci (1999)},
year = {2020},
doi = {10.5458/jag.jag.jag-2019_0016},
pmid = {34429696}
}
@article{lin376472,
title = {Differentiation of Lacticaseibacillus zeae Using Pan-Genome Analysis and Real-Time PCR Method Targeting a Unique Gene.},
author = {Kim E, Yang SM, Kim HY.},
journal = {Foods},
year = {2021},
doi = {10.3390/foods10092112},
pmid = {34574222}
}
@article{lin83776,
title = {Fucosylated Human Milk Oligosaccharide Foraging within the Species Bifidobacterium pseudocatenulatum Is Driven by Glycosyl Hydrolase Content and Specificity.},
author = {Shani G, Hoeflinger JL, Heiss BE, Masarweh CF, Larke JA, Jensen NM, Wickramasinghe S, Davis JC, Goonatilleke E, El-Hawiet A, Nguyen L, Klassen JS, Slupsky CM, Lebrilla CB, Mills DA.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.01707-21},
pmid = {34757822}
}
@article{lin83782,
title = {Discovery and Biotechnological Exploitation of Glycoside-Phosphorylases.},
author = {Li A, Benkoulouche M, Ladeveze S, Durand J, Cioci G, Laville E, Potocki-Veronese G.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms23063043},
pmid = {35328479}
}
@article{lin83749,
title = {Engineered Glycosidases for the Synthesis of Analogs of Human Milk Oligosaccharides.},
author = {Nekvasilova P, Hovorkova M, Meszaros Z, Petraskova L, Pelantova H, Kren V, Slamova K, Bojarova P.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms23084106},
pmid = {35456924}
}
@article{lin376470,
title = {Comparison of Real-Time PCR and Droplet Digital PCR for the Quantitative Detection of Lactiplantibacillus plantarum subsp. plantarum},
author = {Choi CH, Kim E, Yang SM, Kim DS, Suh SM, Lee GY, Kim HY.},
journal = {Foods},
year = {2022},
doi = {10.3390/foods11091331},
pmid = {35564054}
}
@article{lin83740,
title = {2'-Fucosyllactose Increases the Abundance of Blautia in the Presence of Extracellular Fucosidase-Possessing Bacteria.},
author = {Horigome A, Hashikura N, Yoshida K, Xiao JZ, Odamaki T.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.913624},
pmid = {35722280}
}
@article{lin83737,
title = {Priority effects shape the structure of infant-type Bifidobacterium communities on human milk oligosaccharides.},
author = {Ojima MN, Jiang L, Arzamasov AA, Yoshida K, Odamaki T, Xiao J, Nakajima A, Kitaoka M, Hirose J, Urashima T, Katoh T, Gotoh A, van Sinderen D, Rodionov DA, Osterman AL, Sakanaka M, Katayama T.},
journal = {ISME J},
year = {2022},
doi = {10.1038/s41396-022-01270-3},
pmid = {35768643}
}
@article{lin83738,
title = {Structure and function of microbial alpha-l-fucosidases: a mini review.},
author = {Wu H, Owen CD, Juge N.},
journal = {Essays Biochem},
year = {2023},
doi = {10.1042/ebc20220158},
pmid = {36805644}
}
@article{lin83736,
title = {Developing a Fluorescent Inducible System for Free Fucose Quantification in Escherichia coli.},
author = {Nunez S, Barra M, Garrido D.},
journal = {Biosensors (Basel)},
year = {2023},
doi = {10.3390/bios13030388},
pmid = {36979599}
}
@article{lin83734,
title = {GH20 and GH84 beta-N-acetylglucosaminidases with different linkage specificities underpin mucin O-glycan breakdown capability of Bifidobacterium bifidum.},
author = {Takada H, Katoh T, Sakanaka M, Odamaki T, Katayama T.},
journal = {J Biol Chem},
year = {2023},
doi = {10.1016/j.jbc.2023.104781},
pmid = {37146969}
}
@article{lin83742,
title = {Utilization of dietary mixed-linkage beta-glucans by the Firmicute Blautia producta.},
author = {Singh RP, Niharika J, Thakur R, Wagstaff BA, Kumar G, Kurata R, Patel D, Levy CW, Miyazaki T, Field RA.},
journal = {J Biol Chem},
year = {2023},
doi = {10.1016/j.jbc.2023.104806},
pmid = {37172725}
}
@article{lin83764,
title = {Screening Microbial Interactions During Inulin Utilization Reveals Strong Competition and Proteomic Changes in Lacticaseibacillus paracasei M38.},
author = {Vega-Sagardia M, Cabezon EC, Delgado J, Ruiz-Moyano S, Garrido D.},
journal = {Probiotics Antimicrob Proteins},
year = {2024},
doi = {10.1007/s12602-023-10083-5},
pmid = {37227689}
}
@article{lin83716,
title = {Enhancement of the quality attributes and health benefits synbiotic yoghurt from cow's milk.},
author = {Ragab TIM, Badawi KRM, Naeem MA, Helmy WA, Gamal Shalaby AS.},
journal = {Heliyon},
year = {2023},
doi = {10.1016/j.heliyon.2023.e17330},
pmid = {37416641}
}
@article{lin83746,
title = {Impact of milk secretor status on the fecal metabolome and microbiota of breastfed infants.},
author = {Wang A, Diana A, Rahmannia S, Gibson RS, Houghton LA, Slupsky CM.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2257273},
pmid = {37741856}
}
@article{lin83748,
title = {Research Progress on Biological Accumulation, Detection and Inactivation Technologies of Norovirus in Oysters.},
author = {Sun Y, Liang M, Zhao F, Su L.},
journal = {Foods},
year = {2023},
doi = {10.3390/foods12213891},
pmid = {37959010}
}
@article{lin83760,
title = {A simple method that enhances minority species detection in the microbiota: 16S metagenome-DRIP (Deeper Resolution using an Inhibitory Primer).},
author = {Nakajima A, Yoshida K, Gotoh A, Katoh T, Ojima MN, Sakanaka M, Xiao JZ, Odamaki T, Katayama T.},
journal = {Microbiome Res Rep},
year = {2022},
doi = {10.20517/mrr.2022.08},
pmid = {38046362}
}
@article{lin376473,
title = {Assessing probiotic viability in mixed species yogurt using a novel propidium monoazide (PMAxx)-quantitative PCR method.},
author = {Marole TA, Sibanda T, Buys EM.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1325268},
pmid = {38389538}
}
@article{lin376468,
title = {Hydrolysis of oligosaccharides in the gastrointestinal tract alters their prebiotic effects on probiotic strains.},
author = {Lee WM, Song YB, Han KS, Sim WS, Lee BH.},
journal = {Food Sci Biotechnol},
year = {2024},
doi = {10.1007/s10068-023-01474-z},
pmid = {39130657}
}
@article{lin83733,
title = {Crystal Structure of Bifidobacterium bifidum Glycoside Hydrolase Family 110 alpha-Galactosidase Specific for Blood Group B Antigen.},
author = {Kashima T, Akama M, Wakinaka T, Arakawa T, Ashida H, Fushinobu S.},
journal = {J Appl Glycosci (1999)},
year = {2024},
doi = {10.5458/jag.jag.jag-2024_0005},
pmid = {39234034}
}
@article{lin83743,
title = {Discovery of Lacto-N-Biosidases and a Novel N-Acetyllactosaminidase Activity in the CAZy Family GH20: Functional Diversity and Structural Insights.},
author = {Vuillemin M, Muschiol J, Zhang Y, Holck J, Barrett K, Preben Morth J, Meyer AS, Zeuner B.},
journal = {Chembiochem},
year = {2025},
doi = {10.1002/cbic.202400710},
pmid = {39239753}
}
@article{lin83741,
title = {Application of microbial enzymes in medicine and industry: current status and future perspectives.},
author = {Darbandi A, Elahi Z, Dadgar-Zankbar L, Ghasemi F, Kakavandi N, Jafari S, Darbandi T, Ghanavati R.},
journal = {Future Microbiol},
year = {2024},
doi = {10.1080/17460913.2024.2398337},
pmid = {39269849}
}
@article{lin83766,
title = {Determining the metabolic fate of human milk oligosaccharides: it may just be more complex than you think?},
author = {Jackson PPJ, Wijeyesekera A, Rastall RA.},
journal = {Gut Microbiome (Camb)},
year = {2022},
doi = {10.1017/gmb.2022.8},
pmid = {39295778}
}
@article{lin83750,
title = {Impact of different organic acids on heat-moisture treated potato starch for enhancing prebiotic potential.},
author = {Yu SJ, Lee KY, Lee HG.},
journal = {Food Sci Biotechnol},
year = {2024},
doi = {10.1007/s10068-024-01575-3},
pmid = {39328227}
}
@article{lin83715,
title = {Resource sharing of an infant gut microbiota synthetic community in combinations of human milk oligosaccharides.},
author = {Ioannou A, Berkhout MD, Scott WT, Blijenberg B, Boeren S, Mank M, Knol J, Belzer C.},
journal = {ISME J},
year = {2024},
doi = {10.1093/ismejo/wrae209},
pmid = {39423288}
}
@article{lin83711,
title = {Quantitative Analysis of Lactobionic Acid in Bioreactor Cultures and Selected Biological Activities.},
author = {Goderska K, Juzwa W, Karpinski TM.},
journal = {Molecules},
year = {2024},
doi = {10.3390/molecules29225400},
pmid = {39598789}
}
@article{lin83755,
title = {Carotenoid productivity in human intestinal bacteria Eubacterium limosum and Leuconostoc mesenteroides with functional analysis of their carotenoid biosynthesis genes.},
author = {Matsumoto W, Takemura M, Nanaura H, Ami Y, Maoka T, Shindo K, Kurihara S, Misawa N.},
journal = {Eng Microbiol},
year = {2024},
doi = {10.1016/j.engmic.2024.100147},
pmid = {39629323}
}
@article{lin83752,
title = {In vitro competition with Bifidobacterium strains impairs potentially pathogenic growth of Clostridium perfringens on 2'-fucosyllactose.},
author = {Nakajima A, Arzamasov AA, Sakanaka M, Murakami R, Kozakai T, Yoshida K, Katoh T, Ojima MN, Hirose J, Nagao S, Xiao JZ, Odamaki T, Rodionov DA, Katayama T.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2478306},
pmid = {40102238}
}
@article{lin83712,
title = {Milk and mucin glycans orchestrate a synthetic infant gut microbiota structure.},
author = {Berkhout MD, Ioannou A, Kavanal Jayaprakash Y, Plugge CM, Belzer C.},
journal = {FEMS Microbiol Ecol},
year = {2025},
doi = {10.1093/femsec/fiaf069},
pmid = {40560164}
}
@article{lin83735,
title = {Scarless gene disruption enabled by a dual-plasmid knockout platform in a clinical infant-derived Bifidobacterium breve strain.},
author = {Gao Z, Feng L.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1653505},
pmid = {41001056}
}