@article{lin405928,
title = {Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis.},
author = {Ventura M, Lee JH, Canchaya C, Zink R, Leahy S, Moreno-Munoz JA, O'Connell-Motherway M, Higgins D, Fitzgerald GF, O'Sullivan DJ, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.12.8692-8705.2005},
pmid = {16332864}
}
@article{lin405925,
title = {Modulation of rat cecal microbiota by administration of raffinose and encapsulated Bifidobacterium breve.},
author = {Dinoto A, Suksomcheep A, Ishizuka S, Kimura H, Hanada S, Kamagata Y, Asano K, Tomita F, Yokota A.},
journal = {Appl Environ Microbiol},
year = {2006},
doi = {10.1128/aem.72.1.784-792.2006},
pmid = {16391119}
}
@article{lin405923,
title = {Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains.},
author = {Ryan SM, Fitzgerald GF, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2006},
doi = {10.1128/aem.00257-06},
pmid = {16885278}
}
@article{lin405927,
title = {Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003.},
author = {O'Connell Motherway M, O'Driscoll J, Fitzgerald GF, Van Sinderen D.},
journal = {Microb Biotechnol},
year = {2009},
doi = {10.1111/j.1751-7915.2008.00071.x},
pmid = {21261927}
}
@article{lin405924,
title = {Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003.},
author = {O'Connell Motherway M, Fitzgerald GF, van Sinderen D.},
journal = {Microb Biotechnol},
year = {2011},
doi = {10.1111/j.1751-7915.2010.00218.x},
pmid = {21375716}
}
@article{lin405920,
title = {Variation in consumption of human milk oligosaccharides by infant gut-associated strains of Bifidobacterium breve.},
author = {Ruiz-Moyano S, Totten SM, Garrido DA, Smilowitz JT, German JB, Lebrilla CB, Mills DA.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.01843-13},
pmid = {23892749}
}
@article{lin405922,
title = {Metabolism of four alpha-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003.},
author = {O'Connell KJ, O'Connell Motherway M, O'Callaghan J, Fitzgerald GF, Ross RP, Ventura M, Stanton C, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.01775-13},
pmid = {23913435}
}
@article{lin405916,
title = {Comparative genomics of the Bifidobacterium breve taxon.},
author = {Bottacini F, O'Connell Motherway M, Kuczynski J, O'Connell KJ, Serafini F, Duranti S, Milani C, Turroni F, Lugli GA, Zomer A, Zhurina D, Riedel C, Ventura M, van Sinderen D.},
journal = {BMC Genomics},
year = {2014},
doi = {10.1186/1471-2164-15-170},
pmid = {24581150}
}
@article{lin405926,
title = {Diversity, ecology and intestinal function of bifidobacteria.},
author = {Bottacini F, Ventura M, van Sinderen D, O'Connell Motherway M.},
journal = {Microb Cell Fact},
year = {2014},
doi = {10.1186/1475-2859-13-s1-s4},
pmid = {25186128}
}
@article{lin405917,
title = {Discovery of a conjugative megaplasmid in Bifidobacterium breve.},
author = {Bottacini F, O'Connell Motherway M, Casey E, McDonnell B, Mahony J, Ventura M, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2015},
doi = {10.1128/aem.02871-14},
pmid = {25326305}
}
@article{lin405918,
title = {Bifidobacteria isolated from vaginal and gut microbiomes are indistinguishable by comparative genomics.},
author = {Freitas AC, Hill JE.},
journal = {PLoS One},
year = {2018},
doi = {10.1371/journal.pone.0196290},
pmid = {29684056}
}
@article{lin56768,
title = {Extraction of the same novel homoglycan mixture from two different strains of Bifidobacterium animalis and three strains of Bifidobacterium breve.},
author = {Alhudhud M, Sadiq S, Ngo HN, Hidalgo-Cantabrana C, Ruas-Madiedo P, van Sinderen D, Humphreys PN, Laws AP},
journal = {Benef Microbes},
year = {2018},
doi = {10.3920/BM2017.0145},
pmid = {29695179}
}
@article{lin405921,
title = {Characterization of GH2 and GH42 beta-galactosidases derived from bifidobacterial infant isolates.},
author = {Ambrogi V, Bottacini F, O'Sullivan J, O'Connell Motherway M, Linqiu C, Schoemaker B, Schoterman M, van Sinderen D.},
journal = {AMB Express},
year = {2019},
doi = {10.1186/s13568-019-0735-3},
pmid = {30661116}
}
@article{lin405914,
title = {Bifidobacterial biofilm formation is a multifactorial adaptive phenomenon in response to bile exposure.},
author = {Kelly SM, Lanigan N, O'Neill IJ, Bottacini F, Lugli GA, Viappiani A, Turroni F, Ventura M, van Sinderen D.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-68179-9},
pmid = {32665665}
}
@article{lin405919,
title = {How microbial glycosyl hydrolase activity in the gut mucosa initiates microbial cross-feeding.},
author = {Berkhout MD, Plugge CM, Belzer C.},
journal = {Glycobiology},
year = {2022},
doi = {10.1093/glycob/cwab105},
pmid = {34939101}
}
@article{lin405912,
title = {MEGAnnotator2: a pipeline for the assembly and annotation of microbial genomes.},
author = {Lugli GA, Fontana F, Tarracchini C, Milani C, Mancabelli L, Turroni F, Ventura M.},
journal = {Microbiome Res Rep},
year = {2023},
doi = {10.20517/mrr.2022.21},
pmid = {38058405}
}
@article{lin405911,
title = {Genomic and ecological approaches to identify the Bifidobacterium breve prototype of the healthy human gut microbiota.},
author = {Argentini C, Lugli GA, Tarracchini C, Fontana F, Mancabelli L, Viappiani A, Anzalone R, Angelini L, Alessandri G, Longhi G, Bianchi MG, Taurino G, Bussolati O, Milani C, van Sinderen D, Turroni F, Ventura M.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1349391},
pmid = {38426063}
}
@article{lin405915,
title = {Cross-feeding of bifidobacteria promotes intestinal homeostasis: a lifelong perspective on the host health.},
author = {Xiao M, Zhang C, Duan H, Narbad A, Zhao J, Chen W, Zhai Q, Yu L, Tian F.},
journal = {NPJ Biofilms Microbiomes},
year = {2024},
doi = {10.1038/s41522-024-00524-6},
pmid = {38898089}
}
@article{lin405913,
title = {In vitro competition with Bifidobacterium strains impairs potentially pathogenic growth of Clostridium perfringens on 2'-fucosyllactose.},
author = {Nakajima A, Arzamasov AA, Sakanaka M, Murakami R, Kozakai T, Yoshida K, Katoh T, Ojima MN, Hirose J, Nagao S, Xiao JZ, Odamaki T, Rodionov DA, Katayama T.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2478306},
pmid = {40102238}
}