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title = {Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum.},
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title = {Bar-coded pyrosequencing reveals shared bacterial community properties along the temperature gradients of two alkaline hot springs in Yellowstone National Park.},
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title = {Envelope proteins of the CsmB/CsmF and CsmC/CsmD motif families influence the size, shape, and composition of chlorosomes in Chlorobaculum tepidum.},
author = {Li H, Bryant DA.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.00707-09},
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title = {Characterization of the FMO protein from the aerobic chlorophototroph, Candidatus Chloracidobacterium thermophilum.},
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journal = {Photosynth Res},
year = {2010},
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title = {The chlorosome: a prototype for efficient light harvesting in photosynthesis.},
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journal = {Photosynth Res},
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title = {The bound iron-sulfur clusters of type-I homodimeric reaction centers.},
author = {Romberger SP, Golbeck JH.},
journal = {Photosynth Res},
year = {2010},
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title = {Phylogenetic and evolutionary patterns in microbial carotenoid biosynthesis are revealed by comparative genomics.},
author = {Klassen JL.},
journal = {PLoS One},
year = {2010},
doi = {10.1371/journal.pone.0011257},
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title = {Structural model and spectroscopic characteristics of the FMO antenna protein from the aerobic chlorophototroph, Candidatus Chloracidobacterium thermophilum.},
author = {Wen J, Tsukatani Y, Cui W, Zhang H, Gross ML, Bryant DA, Blankenship RE.},
journal = {Biochim Biophys Acta},
year = {2011},
doi = {10.1016/j.bbabio.2010.09.008},
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title = {Identification of a gene essential for the first committed step in the biosynthesis of bacteriochlorophyll c.},
author = {Liu Z, Bryant DA.},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.m111.249433},
pmid = {21550979}
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title = {Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential.},
author = {Klatt CG, Wood JM, Rusch DB, Bateson MM, Hamamura N, Heidelberg JF, Grossman AR, Bhaya D, Cohan FM, Kuhl M, Bryant DA, Ward DM.},
journal = {ISME J},
year = {2011},
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pmid = {21697961}
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title = {Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat.},
author = {Liu Z, Klatt CG, Wood JM, Rusch DB, Ludwig M, Wittekindt N, Tomsho LP, Schuster SC, Ward DM, Bryant DA.},
journal = {ISME J},
year = {2011},
doi = {10.1038/ismej.2011.37},
pmid = {21697962}
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@article{lin344575,
title = {Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus.},
author = {Tang KH, Barry K, Chertkov O, Dalin E, Han CS, Hauser LJ, Honchak BM, Karbach LE, Land ML, Lapidus A, Larimer FW, Mikhailova N, Pitluck S, Pierson BK, Blankenship RE.},
journal = {BMC Genomics},
year = {2011},
doi = {10.1186/1471-2164-12-334},
pmid = {21714912}
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@article{lin344551,
title = {CsmA Protein is Associated with BChl a in the Baseplate Subantenna of Chlorosomes of the Photosynthetic Green Filamentous Bacterium Oscillochloris trichoides belonging to the Family Oscillochloridaceae.},
author = {Zobova A, Taisova A, Lukashev E, Fedorova N, Baratova L, Fetisova Z.},
journal = {J Biophys},
year = {2011},
doi = {10.1155/2011/860382},
pmid = {21941538}
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@article{lin344492,
title = {Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll-based photoheterotroph belonging to the phylum Acidobacteria.},
author = {Garcia Costas AM, Liu Z, Tomsho LP, Schuster SC, Ward DM, Bryant DA.},
journal = {Environ Microbiol},
year = {2012},
doi = {10.1111/j.1462-2920.2011.02592.x},
pmid = {21951563}
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@article{lin344507,
title = {Ultrastructural analysis and identification of envelope proteins of "Candidatus Chloracidobacterium thermophilum" chlorosomes.},
author = {Garcia Costas AM, Tsukatani Y, Romberger SP, Oostergetel GT, Boekema EJ, Golbeck JH, Bryant DA.},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/jb.06124-11},
pmid = {21965575}
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@article{lin344529,
title = {Isolation and characterization of homodimeric type-I reaction center complex from Candidatus Chloracidobacterium thermophilum, an aerobic chlorophototroph.},
author = {Tsukatani Y, Romberger SP, Golbeck JH, Bryant DA.},
journal = {J Biol Chem},
year = {2012},
doi = {10.1074/jbc.m111.323329},
pmid = {22184116}
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@article{lin344506,
title = {Identification of the bacteriochlorophylls, carotenoids, quinones, lipids, and hopanoids of "Candidatus Chloracidobacterium thermophilum".},
author = {Garcia Costas AM, Tsukatani Y, Rijpstra WI, Schouten S, Welander PV, Summons RE, Bryant DA.},
journal = {J Bacteriol},
year = {2012},
doi = {10.1128/jb.06421-11},
pmid = {22210764}
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@article{lin344501,
title = {Phototrophic phylotypes dominate mesothermal microbial mats associated with hot springs in Yellowstone National Park.},
author = {Ross KA, Feazel LM, Robertson CE, Fathepure BZ, Wright KE, Turk-Macleod RM, Chan MM, Held NL, Spear JR, Pace NR.},
journal = {Microb Ecol},
year = {2012},
doi = {10.1007/s00248-012-0012-3},
pmid = {22327269}
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@article{lin344570,
title = {'Candidatus Thermochlorobacter aerophilum:' an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics.},
author = {Liu Z, Klatt CG, Ludwig M, Rusch DB, Jensen SI, Kuhl M, Ward DM, Bryant DA.},
journal = {ISME J},
year = {2012},
doi = {10.1038/ismej.2012.24},
pmid = {22456447}
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@article{lin344565,
title = {Bacteriochlorophyll f: properties of chlorosomes containing the "forbidden chlorophyll".},
author = {Vogl K, Tank M, Orf GS, Blankenship RE, Bryant DA.},
journal = {Front Microbiol},
year = {2012},
doi = {10.3389/fmicb.2012.00298},
pmid = {22908012}
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@article{lin344520,
title = {Chlorophyll biosynthesis gene evolution indicates photosystem gene duplication, not photosystem merger, at the origin of oxygenic photosynthesis.},
author = {Sousa FL, Shavit-Grievink L, Allen JF, Martin WF.},
journal = {Genome Biol Evol},
year = {2013},
doi = {10.1093/gbe/evs127},
pmid = {23258841}
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@article{lin344549,
title = {Ecological divergence of a novel group of Chloroflexus strains along a geothermal gradient.},
author = {Weltzer ML, Miller SR.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.02753-12},
pmid = {23263946}
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@article{lin344571,
title = {Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring.},
author = {Klatt CG, Liu Z, Ludwig M, Kuhl M, Jensen SI, Bryant DA, Ward DM.},
journal = {ISME J},
year = {2013},
doi = {10.1038/ismej.2013.52},
pmid = {23575369}
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@article{lin344550,
title = {Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments.},
author = {Klatt CG, Inskeep WP, Herrgard MJ, Jay ZJ, Rusch DB, Tringe SG, Niki Parenteau M, Ward DM, Boomer SM, Bryant DA, Miller SR.},
journal = {Front Microbiol},
year = {2013},
doi = {10.3389/fmicb.2013.00106},
pmid = {23761787}
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@article{lin344560,
title = {A metastable equilibrium model for the relative abundances of microbial phyla in a hot spring.},
author = {Dick JM, Shock EL.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0072395},
pmid = {24023738}
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@article{lin344497,
title = {Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils.},
author = {Crowe MA, Power JF, Morgan XC, Dunfield PF, Lagutin K, Rijpstra WIC, Vyssotski M, Sinninghe Damste JS, Houghton KM, Ryan JLJ, Stott MB.},
journal = {Int J Syst Evol Microbiol},
year = {2014},
doi = {10.1099/ijs.0.055079-0},
pmid = {24048862}
}
@article{lin344543,
title = {Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil.},
author = {Rawat SR, Mannisto MK, Starovoytov V, Goodwin L, Nolan M, Hauser LJ, Land M, Davenport KW, Woyke T, Haggblom MM.},
journal = {Stand Genomic Sci},
year = {2013},
doi = {10.4056/sigs.4328031},
pmid = {24501646}
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@article{lin344499,
title = {Ether- and ester-bound iso-diabolic acid and other lipids in members of acidobacteria subdivision 4.},
author = {Sinninghe Damste JS, Rijpstra WI, Hopmans EC, Foesel BU, Wust PK, Overmann J, Tank M, Bryant DA, Dunfield PF, Houghton K, Stott MB.},
journal = {Appl Environ Microbiol},
year = {2014},
doi = {10.1128/aem.01066-14},
pmid = {24928878}
}
@article{lin344574,
title = {The molecular evolution of the Qo motif.},
author = {Kao WC, Hunte C.},
journal = {Genome Biol Evol},
year = {2014},
doi = {10.1093/gbe/evu147},
pmid = {25115012}
}
@article{lin344557,
title = {Rhizosphere microbial community composition affects cadmium and zinc uptake by the metal-hyperaccumulating plant Arabidopsis halleri.},
author = {Muehe EM, Weigold P, Adaktylou IJ, Planer-Friedrich B, Kraemer U, Kappler A, Behrens S.},
journal = {Appl Environ Microbiol},
year = {2015},
doi = {10.1128/aem.03359-14},
pmid = {25595759}
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@article{lin51689,
title = {Chloracidobacterium thermophilum gen. nov., sp. nov.: an anoxygenic microaerophilic chlorophotoheterotrophic acidobacterium.},
author = {Tank M, Bryant DA},
journal = {Int J Syst Evol Microbiol},
year = {2015},
doi = {10.1099/ijs.0.000113},
pmid = {25667398}
}
@article{lin344572,
title = {Golgi anti-apoptotic proteins are highly conserved ion channels that affect apoptosis and cell migration.},
author = {Carrara G, Saraiva N, Parsons M, Byrne B, Prole DL, Taylor CW, Smith GL.},
journal = {J Biol Chem},
year = {2015},
doi = {10.1074/jbc.m115.637306},
pmid = {25713081}
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@article{lin344521,
title = {Diversity of thermophiles in a Malaysian hot spring determined using 16S rRNA and shotgun metagenome sequencing.},
author = {Chan CS, Chan KG, Tay YL, Chua YH, Goh KM.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00177},
pmid = {25798135}
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@article{lin344559,
title = {Biochemical Validation of the Glyoxylate Cycle in the Cyanobacterium Chlorogloeopsis fritschii Strain PCC 9212.},
author = {Zhang S, Bryant DA.},
journal = {J Biol Chem},
year = {2015},
doi = {10.1074/jbc.m115.648170},
pmid = {25869135}
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@article{lin344519,
title = {Nutrient requirements and growth physiology of the photoheterotrophic Acidobacterium, Chloracidobacterium thermophilum.},
author = {Tank M, Bryant DA.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00226},
pmid = {25870589}
}
@article{lin344546,
title = {Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms.},
author = {Kim YM, Nowack S, Olsen MT, Becraft ED, Wood JM, Thiel V, Klapper I, Kuhl M, Fredrickson JK, Bryant DA, Ward DM, Metz TO.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00209},
pmid = {25941514}
}
@article{lin344563,
title = {The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat.},
author = {Olsen MT, Nowack S, Wood JM, Becraft ED, LaButti K, Lipzen A, Martin J, Schackwitz WS, Rusch DB, Cohan FM, Bryant DA, Ward DM.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00604},
pmid = {26157428}
}
@article{lin344564,
title = {The molecular dimension of microbial species: 2. Synechococcus strains representative of putative ecotypes inhabiting different depths in the Mushroom Spring microbial mat exhibit different adaptive and acclimative responses to light.},
author = {Nowack S, Olsen MT, Schaible GA, Becraft ED, Shen G, Klapper I, Bryant DA, Ward DM.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00626},
pmid = {26175719}
}
@article{lin344490,
title = {Novel isolates double the number of chemotrophic species and allow the first description of higher taxa in Acidobacteria subdivision 4.},
author = {Pascual J, Wust PK, Geppert A, Foesel BU, Huber KJ, Overmann J.},
journal = {Syst Appl Microbiol},
year = {2015},
doi = {10.1016/j.syapm.2015.08.001},
pmid = {26460220}
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@article{lin344532,
title = {Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T).},
author = {Lee KC, Morgan XC, Power JF, Dunfield PF, Huttenhower C, Stott MB.},
journal = {Stand Genomic Sci},
year = {2015},
doi = {10.1186/s40793-015-0099-5},
pmid = {26568784}
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@article{lin344566,
title = {Metagenomics of an Alkaline Hot Spring in Galicia (Spain): Microbial Diversity Analysis and Screening for Novel Lipolytic Enzymes.},
author = {Lopez-Lopez O, Knapik K, Cerdan ME, Gonzalez-Siso MI.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.01291},
pmid = {26635759}
}
@article{lin344555,
title = {Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.},
author = {Eloe-Fadrosh EA, Paez-Espino D, Jarett J, Dunfield PF, Hedlund BP, Dekas AE, Grasby SE, Brady AL, Dong H, Briggs BR, Li WJ, Goudeau D, Malmstrom R, Pati A, Pett-Ridge J, Rubin EM, Woyke T, Kyrpides NC, Ivanova NN.},
journal = {Nat Commun},
year = {2016},
doi = {10.1038/ncomms10476},
pmid = {26814032}
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@article{lin344481,
title = {Draft Genome Sequence of the Photoheterotrophic Chloracidobacterium thermophilum Strain OC1 Found in a Mat at Ojo Caliente.},
author = {Hallenbeck PC, Grogger M, Mraz M, Veverka D.},
journal = {Genome Announc},
year = {2016},
doi = {10.1128/genomea.01570-15},
pmid = {26893414}
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@article{lin344511,
title = {Origin of Bacteriochlorophyll a and the Early Diversification of Photosynthesis.},
author = {Cardona T.},
journal = {PLoS One},
year = {2016},
doi = {10.1371/journal.pone.0151250},
pmid = {26953697}
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@article{lin344537,
title = {Absence of the cbb3 Terminal Oxidase Reveals an Active Oxygen-Dependent Cyclase Involved in Bacteriochlorophyll Biosynthesis in Rhodobacter sphaeroides.},
author = {Chen GE, Canniffe DP, Martin EC, Hunter CN.},
journal = {J Bacteriol},
year = {2016},
doi = {10.1128/jb.00121-16},
pmid = {27215788}
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@article{lin344547,
title = {Pyrosequencing analysis revealed complex endogenetic microorganism community from natural DongChong XiaCao and its microhabitat.},
author = {Xia F, Liu Y, Guo MY, Shen GR, Lin J, Zhou XW.},
journal = {BMC Microbiol},
year = {2016},
doi = {10.1186/s12866-016-0813-5},
pmid = {27565900}
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@article{lin344544,
title = {The transjugation machinery of Thermus thermophilus: Identification of TdtA, an ATPase involved in DNA donation.},
author = {Blesa A, Baquedano I, Quintans NG, Mata CP, Caston JR, Berenguer J.},
journal = {PLoS Genet},
year = {2017},
doi = {10.1371/journal.pgen.1006669},
pmid = {28282376}
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@article{lin344522,
title = {Golgi anti-apoptotic protein: a tale of camels, calcium, channels and cancer.},
author = {Carrara G, Parsons M, Saraiva N, Smith GL.},
journal = {Open Biol},
year = {2017},
doi = {10.1098/rsob.170045},
pmid = {28469007}
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@article{lin344527,
title = {The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses.},
author = {Thiel V, Hugler M, Ward DM, Bryant DA.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.00943},
pmid = {28634470}
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@article{lin344460,
title = {Pheno- and Genotyping of Hopanoid Production in Acidobacteria.},
author = {Damste JSS, Rijpstra WIC, Dedysh SN, Foesel BU, Villanueva L.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.00968},
pmid = {28642737}
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@article{lin344478,
title = {In vitro enzymatic assays of photosynthetic bacterial 3-vinyl hydratases for bacteriochlorophyll biosyntheses.},
author = {Teramura M, Harada J, Tamiaki H.},
journal = {Photosynth Res},
year = {2018},
doi = {10.1007/s11120-017-0415-6},
pmid = {28643169}
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@article{lin344484,
title = {Draft Genome Sequence of Anoxybacillusayderensis Strain MT-Cab (Firmicutes).},
author = {Thiel V, Tank M, Tomsho LP, Burhans R, Gay SE, Hamilton TL, Schuster SC, Bryant DA.},
journal = {Genome Announc},
year = {2017},
doi = {10.1128/genomea.00547-17},
pmid = {28663291}
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@article{lin344479,
title = {Draft Genome Sequence of Chloracidobacterium sp. CP2_5A, a Phototrophic Member of the Phylum Acidobacteria Recovered from a Japanese Hot Spring.},
author = {Ward LM, McGlynn SE, Fischer WW.},
journal = {Genome Announc},
year = {2017},
doi = {10.1128/genomea.00821-17},
pmid = {28982986}
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@article{lin344535,
title = {Absence of Selection for Quantum Coherence in the Fenna-Matthews-Olson Complex: A Combined Evolutionary and Excitonic Study.},
author = {Valleau S, Studer RA, Hase F, Kreisbeck C, Saer RG, Blankenship RE, Shakhnovich EI, Aspuru-Guzik A.},
journal = {ACS Cent Sci},
year = {2017},
doi = {10.1021/acscentsci.7b00269},
pmid = {29104925}
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@article{lin344553,
title = {A physiological perspective on the origin and evolution of photosynthesis.},
author = {Martin WF, Bryant DA, Beatty JT.},
journal = {FEMS Microbiol Rev},
year = {2018},
doi = {10.1093/femsre/fux056},
pmid = {29177446}
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@article{lin344562,
title = {Effect of light wavelength on hot spring microbial mat biodiversity.},
author = {Nishida A, Thiel V, Nakagawa M, Ayukawa S, Yamamura M.},
journal = {PLoS One},
year = {2018},
doi = {10.1371/journal.pone.0191650},
pmid = {29381713}
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@article{lin344542,
title = {Early Archean origin of heterodimeric Photosystem I.},
author = {Cardona T.},
journal = {Heliyon},
year = {2018},
doi = {10.1016/j.heliyon.2018.e00548},
pmid = {29560463}
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@article{lin344473,
title = {15N photo-CIDNP MAS NMR analysis of reaction centers of Chloracidobacterium thermophilum.},
author = {Zill JC, He Z, Tank M, Ferlez BH, Canniffe DP, Lahav Y, Bellstedt P, Alia A, Schapiro I, Golbeck JH, Bryant DA, Matysik J.},
journal = {Photosynth Res},
year = {2018},
doi = {10.1007/s11120-018-0504-1},
pmid = {29603082}
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@article{lin344475,
title = {The type IV pilus assembly motor PilB is a robust hexameric ATPase with complex kinetics.},
author = {Sukmana A, Yang Z.},
journal = {Biochem J},
year = {2018},
doi = {10.1042/bcj20180167},
pmid = {29717025}
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@article{lin344530,
title = {A paralog of a bacteriochlorophyll biosynthesis enzyme catalyzes the formation of 1,2-dihydrocarotenoids in green sulfur bacteria.},
author = {Canniffe DP, Thweatt JL, Gomez Maqueo Chew A, Hunter CN, Bryant DA.},
journal = {J Biol Chem},
year = {2018},
doi = {10.1074/jbc.ra118.004672},
pmid = {30126840}
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@article{lin344539,
title = {Physiological Studies of Chlorobiaceae Suggest that Bacillithiol Derivatives Are the Most Widespread Thiols in Bacteria.},
author = {Hiras J, Sharma SV, Raman V, Tinson RAJ, Arbach M, Rodrigues DF, Norambuena J, Hamilton CJ, Hanson TE.},
journal = {mBio},
year = {2018},
doi = {10.1128/mbio.01603-18},
pmid = {30482829}
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@article{lin344569,
title = {"Candidatus Thermonerobacter thiotrophicus," A Non-phototrophic Member of the Bacteroidetes/Chlorobi With Dissimilatory Sulfur Metabolism in Hot Spring Mat Communities.},
author = {Thiel V, Garcia Costas AM, Fortney NW, Martinez JN, Tank M, Roden EE, Boyd ES, Ward DM, Hanada S, Bryant DA.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.03159},
pmid = {30687241}
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@article{lin344541,
title = {Enzyme-fusion strategies for redirecting and improving carotenoid synthesis in S. cerevisiae.},
author = {Rabeharindranto H, Castano-Cerezo S, Lautier T, Garcia-Alles LF, Treitz C, Tholey A, Truan G.},
journal = {Metab Eng Commun},
year = {2019},
doi = {10.1016/j.mec.2019.e00086},
pmid = {30723675}
}
@article{lin344468,
title = {An Alternative Active Site Architecture for O2 Activation in the Ergothioneine Biosynthetic EgtB from Chloracidobacterium thermophilum.},
author = {Stampfli AR, Goncharenko KV, Meury M, Dubey BN, Schirmer T, Seebeck FP.},
journal = {J Am Chem Soc},
year = {2019},
doi = {10.1021/jacs.8b13023},
pmid = {30883103}
}
@article{lin344561,
title = {A Ubiquitous Platform for Bacterial Nanotube Biogenesis.},
author = {Bhattacharya S, Baidya AK, Pal RR, Mamou G, Gatt YE, Margalit H, Rosenshine I, Ben-Yehuda S.},
journal = {Cell Rep},
year = {2019},
doi = {10.1016/j.celrep.2019.02.055},
pmid = {30929979}
}
@article{lin344469,
title = {Reaction centers of the thermophilic microaerophile, Chloracidobacterium thermophilum (Acidobacteria) I: biochemical and biophysical characterization.},
author = {He Z, Ferlez B, Kurashov V, Tank M, Golbeck JH, Bryant DA.},
journal = {Photosynth Res},
year = {2019},
doi = {10.1007/s11120-019-00650-9},
pmid = {31161318}
}
@article{lin344538,
title = {The influence of temperature and pH on bacterial community composition of microbial mats in hot springs from Costa Rica.},
author = {Uribe-Lorio L, Brenes-Guillen L, Hernandez-Ascencio W, Mora-Amador R, Gonzalez G, Ramirez-Umana CJ, Diez B, Pedros-Alio C.},
journal = {Microbiologyopen},
year = {2019},
doi = {10.1002/mbo3.893},
pmid = {31271524}
}
@article{lin344523,
title = {Microbial diversity analysis and screening for novel xylanase enzymes from the sediment of the Lobios Hot Spring in Spain.},
author = {Knapik K, Becerra M, Gonzalez-Siso MI.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-47637-z},
pmid = {31371784}
}
@article{lin344545,
title = {Acidobacteria Subgroups and Their Metabolic Potential for Carbon Degradation in Sugarcane Soil Amended With Vinasse and Nitrogen Fertilizers.},
author = {de Chaves MG, Silva GGZ, Rossetto R, Edwards RA, Tsai SM, Navarrete AA.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.01680},
pmid = {31417506}
}
@article{lin344470,
title = {Selenocysteine as a Substrate, an Inhibitor and a Mechanistic Probe for Bacterial and Fungal Iron-Dependent Sulfoxide Synthases.},
author = {Goncharenko KV, Fluckiger S, Liao C, Lim D, Stampfli AR, Seebeck FP.},
journal = {Chemistry},
year = {2020},
doi = {10.1002/chem.201903898},
pmid = {31545545}
}
@article{lin344554,
title = {Anoxygenic Phototrophs Span Geochemical Gradients and Diverse Morphologies in Terrestrial Geothermal Springs.},
author = {Hamilton TL, Bennett AC, Murugapiran SK, Havig JR.},
journal = {mSystems},
year = {2019},
doi = {10.1128/msystems.00498-19},
pmid = {31690593}
}
@article{lin344517,
title = {Entirely Off-Grid and Solar-Powered DNA Sequencing of Microbial Communities during an Ice Cap Traverse Expedition.},
author = {Gowers GF, Vince O, Charles JH, Klarenberg I, Ellis T, Edwards A.},
journal = {Genes (Basel)},
year = {2019},
doi = {10.3390/genes10110902},
pmid = {31703372}
}
@article{lin344516,
title = {Phylogeny of Anoxygenic Photosynthesis Based on Sequences of Photosynthetic Reaction Center Proteins and a Key Enzyme in Bacteriochlorophyll Biosynthesis, the Chlorophyllide Reductase.},
author = {Imhoff JF, Rahn T, Kunzel S, Neulinger SC.},
journal = {Microorganisms},
year = {2019},
doi = {10.3390/microorganisms7110576},
pmid = {31752268}
}
@article{lin344510,
title = {Cyclic-di-GMP and ADP bind to separate domains of PilB as mutual allosteric effectors.},
author = {Dye KJ, Yang Z.},
journal = {Biochem J},
year = {2020},
doi = {10.1042/bcj20190809},
pmid = {31868878}
}
@article{lin344534,
title = {Short-Term Stable Isotope Probing of Proteins Reveals Taxa Incorporating Inorganic Carbon in a Hot Spring Microbial Mat.},
author = {Steinke L, Slysz GW, Lipton MS, Klatt C, Moran JJ, Romine MF, Wood JM, Anderson G, Bryant DA, Ward DM.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.01829-19},
pmid = {31953342}
}
@article{lin344467,
title = {Two-dimensional 67Zn HYSCORE spectroscopy reveals that a Zn-bacteriochlorophyll aP' dimer is the primary donor (P840) in the type-1 reaction centers of Chloracidobacterium thermophilum.},
author = {Charles P, Kalendra V, He Z, Khatami MH, Golbeck JH, van der Est A, Lakshmi KV, Bryant DA.},
journal = {Phys Chem Chem Phys},
year = {2020},
doi = {10.1039/c9cp06556c},
pmid = {32152610}
}
@article{lin344556,
title = {Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils.},
author = {Ivanova AA, Zhelezova AD, Chernov TI, Dedysh SN.},
journal = {PLoS One},
year = {2020},
doi = {10.1371/journal.pone.0230157},
pmid = {32182280}
}
@article{lin344489,
title = {Crystal Structure of the Ergothioneine Sulfoxide Synthase from Candidatus Chloracidobacterium thermophilum and Structure-Guided Engineering To Modulate Its Substrate Selectivity.},
author = {Naowarojna N, Irani S, Hu W, Cheng R, Zhang L, Li X, Chen J, Zhang YJ, Liu P.},
journal = {ACS Catal},
year = {2019},
doi = {10.1021/acscatal.9b02054},
pmid = {32257583}
}
@article{lin344536,
title = {Biosignatures Associated with Freshwater Microbialites.},
author = {White RA, Soles SA, Brady AL, Southam G, Lim DSS, Slater GF.},
journal = {Life (Basel)},
year = {2020},
doi = {10.3390/life10050066},
pmid = {32429118}
}
@article{lin344540,
title = {Anoxygenic photosynthesis and iron-sulfur metabolic potential of Chlorobia populations from seasonally anoxic Boreal Shield lakes.},
author = {Tsuji JM, Tran N, Schiff SL, Venkiteswaran JJ, Molot LA, Tank M, Hanada S, Neufeld JD.},
journal = {ISME J},
year = {2020},
doi = {10.1038/s41396-020-0725-0},
pmid = {32747714}
}
@article{lin344476,
title = {Directed Evolution of a Halide Methyltransferase Enables Biocatalytic Synthesis of Diverse SAM Analogs.},
author = {Tang Q, Grathwol CW, Aslan-Uzel AS, Wu S, Link A, Pavlidis IV, Badenhorst CPS, Bornscheuer UT.},
journal = {Angew Chem Int Ed Engl},
year = {2021},
doi = {10.1002/anie.202013871},
pmid = {33108827}
}
@article{lin344533,
title = {Spectropolarimetry of Primitive Phototrophs as Global Surface Biosignatures.},
author = {Sparks WB, Parenteau MN, Blankenship RE, Germer TA, Patty CHL, Bott KM, Telesco CM, Meadows VS.},
journal = {Astrobiology},
year = {2021},
doi = {10.1089/ast.2020.2272},
pmid = {33216615}
}
@article{lin344548,
title = {Time-resolved comparative molecular evolution of oxygenic photosynthesis.},
author = {Oliver T, Sanchez-Baracaldo P, Larkum AW, Rutherford AW, Cardona T.},
journal = {Biochim Biophys Acta Bioenerg},
year = {2021},
doi = {10.1016/j.bbabio.2021.148400},
pmid = {33617856}
}
@article{lin344513,
title = {High-Throughput Screen for Inhibitors of the Type IV Pilus Assembly ATPase PilB.},
author = {Dye KJ, Vogelaar NJ, Sobrado P, Yang Z.},
journal = {mSphere},
year = {2021},
doi = {10.1128/msphere.00129-21},
pmid = {33658276}
}
@article{lin344524,
title = {Microbiome Aggregated Traits and Assembly Are More Sensitive to Soil Management than Diversity.},
author = {Neal AL, Hughes D, Clark IM, Jansson JK, Hirsch PR.},
journal = {mSystems},
year = {2021},
doi = {10.1128/msystems.01056-20},
pmid = {34042469}
}
@article{lin344528,
title = {Recent advances in the structural diversity of reaction centers.},
author = {Gisriel CJ, Azai C, Cardona T.},
journal = {Photosynth Res},
year = {2021},
doi = {10.1007/s11120-021-00857-9},
pmid = {34173168}
}
@article{lin344477,
title = {Genomic and Phenotypic Characterization of Chloracidobacterium Isolates Provides Evidence for Multiple Species.},
author = {Saini MK, Sebastian A, Shirotori Y, Soulier NT, Garcia Costas AM, Drautz-Moses DI, Schuster SC, Albert I, Haruta S, Hanada S, Thiel V, Tank M, Bryant DA.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.704168},
pmid = {34220789}
}
@article{lin344503,
title = {Crop rotation reduces the frequency of anaerobic soil bacteria in Red Latosol of Brazil.},
author = {Cezar RM, Vezzani FM, Kaschuk G, Balsanelli E, de Souza EM, Vargas LK, Molin R.},
journal = {Braz J Microbiol},
year = {2021},
doi = {10.1007/s42770-021-00578-0},
pmid = {34319574}
}
@article{lin344482,
title = {Biocatalytic C3-Indole Methylation-A Useful Tool for the Natural-Product-Inspired Stereoselective Synthesis of Pyrroloindoles.},
author = {Schneider P, Henssen B, Paschold B, Chapple BP, Schatton M, Seebeck FP, Classen T, Pietruszka J.},
journal = {Angew Chem Int Ed Engl},
year = {2021},
doi = {10.1002/anie.202107619},
pmid = {34399441}
}
@article{lin344525,
title = {Implications for an imidazol-2-yl carbene intermediate in the rhodanase-catalyzed C-S bond formation reaction of anaerobic ergothioneine biosynthesis.},
author = {Cheng R, Lai R, Peng C, Lopez J, Li Z, Naowarojna N, Li K, Wong C, Lee N, Whelan SA, Qiao L, Grinstaff MW, Wang J, Cui Q, Liu P.},
journal = {ACS Catal},
year = {2021},
doi = {10.1021/acscatal.0c04886},
pmid = {34745712}
}
@article{lin344480,
title = {Substrate Profiling of Anion Methyltransferases for Promiscuous Synthesis of S-Adenosylmethionine Analogs from Haloalkanes.},
author = {Schulke KH, Ospina F, Hornschemeyer K, Gergel S, Hammer SC.},
journal = {Chembiochem},
year = {2022},
doi = {10.1002/cbic.202100632},
pmid = {34927779}
}
@article{lin344502,
title = {Mucosal microbiome associates with progression to gastric cancer.},
author = {Png CW, Lee WJJ, Chua SJ, Zhu F, Gastric Consortium5, Yeoh KG, Zhang Y.},
journal = {Theranostics},
year = {2022},
doi = {10.7150/thno.65302},
pmid = {34987633}
}
@article{lin344518,
title = {Metagenomic analysis of rhizosphere microbiome provides insights into occurrence of iron deficiency chlorosis in field of Asian pears.},
author = {Jia B, Chang X, Fu Y, Heng W, Ye Z, Liu P, Liu L, Al Shoffe Y, Watkins CB, Zhu L.},
journal = {BMC Microbiol},
year = {2022},
doi = {10.1186/s12866-021-02432-7},
pmid = {34996363}
}
@article{lin344496,
title = {Elioraea tepida, sp. nov., a Moderately Thermophilic Aerobic Anoxygenic Phototrophic Bacterium Isolated from the Mat Community of an Alkaline Siliceous Hot Spring in Yellowstone National Park, WY, USA.},
author = {Saini MK, Yoshida S, Sebastian A, Hara E, Tamaki H, Soulier NT, Albert I, Hanada S, Tank M, Bryant DA.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms10010080},
pmid = {35056529}
}
@article{lin344512,
title = {GAL08, an Uncultivated Group of Acidobacteria, Is a Dominant Bacterial Clade in a Neutral Hot Spring.},
author = {Ruhl IA, Sheremet A, Furgason CC, Krause S, Bowers RM, Jarett JK, Tran TM, Grasby SE, Woyke T, Dunfield PF.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.787651},
pmid = {35087491}
}
@article{lin344514,
title = {OvoAMtht from Methyloversatilis thermotolerans ovothiol biosynthesis is a bifunction enzyme: thiol oxygenase and sulfoxide synthase activities.},
author = {Cheng R, Weitz AC, Paris J, Tang Y, Zhang J, Song H, Naowarojna N, Li K, Qiao L, Lopez J, Grinstaff MW, Zhang L, Guo Y, Elliott S, Liu P.},
journal = {Chem Sci},
year = {2022},
doi = {10.1039/d1sc05479a},
pmid = {35432880}
}
@article{lin344504,
title = {Proteomic Time-Course Analysis of the Filamentous Anoxygenic Phototrophic Bacterium, Chloroflexus aurantiacus, during the Transition from Respiration to Phototrophy.},
author = {Kawai S, Shimamura S, Shimane Y, Tsukatani Y.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10071288},
pmid = {35889008}
}
@article{lin344509,
title = {A Single Aspergillus fumigatus Gene Enables Ergothioneine Biosynthesis and Secretion by Saccharomyces cerevisiae.},
author = {Doyle S, Cuskelly DD, Conlon N, Fitzpatrick DA, Gilmartin CB, Dix SH, Jones GW.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms231810832},
pmid = {36142753}
}
@article{lin344472,
title = {Discovery of Two Inhibitors of the Type IV Pilus Assembly ATPase PilB as Potential Antivirulence Compounds.},
author = {Dye KJ, Vogelaar NJ, O'Hara M, Sobrado P, Santos W, Carlier PR, Yang Z.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.03877-22},
pmid = {36377931}
}
@article{lin344459,
title = {Structure of the Acidobacteria homodimeric reaction center bound with cytochrome c.},
author = {Dong S, Huang G, Wang C, Wang J, Sui SF, Qin X.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-35460-6},
pmid = {36517472}
}
@article{lin344488,
title = {Energetic Diversity in the Electron-Transfer Pathways of Type I Photosynthetic Reaction Centers.},
author = {Kanda T, Ishikita H.},
journal = {Biochemistry},
year = {2023},
doi = {10.1021/acs.biochem.2c00689},
pmid = {36749324}
}
@article{lin344485,
title = {An S=1 Iron(IV) Intermediate Revealed in a Non-Heme Iron Enzyme-Catalyzed Oxidative C-S Bond Formation.},
author = {Paris JC, Hu S, Wen A, Weitz AC, Cheng R, Gee LB, Tang Y, Kim H, Vegas A, Chang WC, Elliott SJ, Liu P, Guo Y.},
journal = {Angew Chem Int Ed Engl},
year = {2023},
doi = {10.1002/anie.202309362},
pmid = {37640689}
}
@article{lin344494,
title = {Myxococcus xanthus PilB interacts with c-di-GMP and modulates motility and biofilm formation.},
author = {Dye KJ, Salar S, Allen U, Smith W, Yang Z.},
journal = {J Bacteriol},
year = {2023},
doi = {10.1128/jb.00221-23},
pmid = {37695853}
}
@article{lin344466,
title = {A quantitative assessment of (bacterio)chlorophyll assignments in the cryo-EM structure of the Chloracidobacterium thermophilum reaction center.},
author = {Gisriel CJ, Flesher DA, Long Z, Liu J, Wang J, Bryant DA, Batista VS, Brudvig GW.},
journal = {Photosynth Res},
year = {2024},
doi = {10.1007/s11120-023-01047-5},
pmid = {37749456}
}
@article{lin344491,
title = {Biochemical and Structural Characterization of OvoATh2: A Mononuclear Nonheme Iron Enzyme from Hydrogenimonas thermophila for Ovothiol Biosynthesis.},
author = {Wang X, Hu S, Wang J, Zhang T, Ye K, Wen A, Zhu G, Vegas A, Zhang L, Yan W, Liu X, Liu P.},
journal = {ACS Catal},
year = {2023},
doi = {10.1021/acscatal.3c04026},
pmid = {38058600}
}
@article{lin344486,
title = {Application of the C3-Methyltransferase StspM1 for the Synthesis of the Natural Pyrroloindole Motif.},
author = {Haase M, David B, Paschold B, Classen T, Schneider P, Pozhydaieva N, Gohlke H, Pietruszka J.},
journal = {ACS Catal},
year = {2024},
doi = {10.1021/acscatal.3c04952},
pmid = {38205025}
}
@article{lin344515,
title = {What We Are Learning from the Diverse Structures of the Homodimeric Type I Reaction Center-Photosystems of Anoxygenic Phototropic Bacteria.},
author = {Niederman RA.},
journal = {Biomolecules},
year = {2024},
doi = {10.3390/biom14030311},
pmid = {38540731}
}
@article{lin344471,
title = {The synergy between the PscC subunits for electron transfer to the P840 special pair in Chlorobaculum tepidum.},
author = {Lyratzakis A, Daskalakis V, Xie H, Tsiotis G.},
journal = {Photosynth Res},
year = {2024},
doi = {10.1007/s11120-024-01093-7},
pmid = {38625595}
}
@article{lin344495,
title = {Integrating multi-platform assembly to recover MAGs from hot spring biofilms: insights into microbial diversity, biofilm formation, and carbohydrate degradation.},
author = {Liew KJ, Shahar S, Shamsir MS, Shaharuddin NB, Liang CH, Chan KG, Pointing SB, Sani RK, Goh KM.},
journal = {Environ Microbiome},
year = {2024},
doi = {10.1186/s40793-024-00572-7},
pmid = {38706006}
}
@article{lin344465,
title = {Identification of small molecule inhibitors of the Chloracidobacterium thermophilum type IV pilus protein PilB by ensemble virtual screening.},
author = {McDonald-Ramos JS, Hicklin IK, Yang Z, Brown AM.},
journal = {Arch Biochem Biophys},
year = {2024},
doi = {10.1016/j.abb.2024.110127},
pmid = {39154818}
}
@article{lin344487,
title = {Structural insights into the convergent evolution of sulfoxide synthase EgtB-IV, an ergothioneine-biosynthetic homolog of ovothiol synthase OvoA.},
author = {Ireland KA, Kayrouz CM, Abbott ML, Seyedsayamdost MR, Davis KM.},
journal = {Structure},
year = {2024},
doi = {10.1016/j.str.2024.08.006},
pmid = {39216472}
}
@article{lin344483,
title = {The structural basis for high-affinity c-di-GMP binding to the GSPII-B domain of the traffic ATPase PilF from Thermus thermophilus.},
author = {Neissner K, Keller H, Kirchner L, Dusterhus S, Duchardt-Ferner E, Averhoff B, Wohnert J.},
journal = {J Biol Chem},
year = {2025},
doi = {10.1016/j.jbc.2024.108041},
pmid = {39615687}
}
@article{lin344474,
title = {A Phage-Based Approach to Identify Antivirulence Inhibitors of Bacterial Type IV Pili.},
author = {Shimozono TM, Vogelaar NJ, O'Hara MT, Yang Z.},
journal = {Microb Biotechnol},
year = {2025},
doi = {10.1111/1751-7915.70081},
pmid = {39822166}
}
@article{lin344464,
title = {Efficient production of Ergothioneine via an optimized allogenous assembly of the ERG synthesis pathway in Escherichia coli BL21.},
author = {Li L, Xu S, Jiang Y.},
journal = {J Biotechnol},
year = {2025},
doi = {10.1016/j.jbiotec.2025.06.009},
pmid = {40523433}
}
@article{lin344461,
title = {Defining Factors that Influence the Stability of Tetrameric EgtB from Chloracidobacterium thermophilum: From pH Modulation to Affinity Tag Retention.},
author = {Rodriguez KW, Meier KK.},
journal = {Biochemistry},
year = {2025},
doi = {10.1021/acs.biochem.5c00123},
pmid = {40755291}
}
@article{lin344463,
title = {Association of As(III) Methyltransferases and Radical S-Adenosylmethionine Enzymes.},
author = {Chen J, Viswanathan T, Rosen BP.},
journal = {Environ Sci Technol},
year = {2025},
doi = {10.1021/acs.est.5c05830},
pmid = {40994264}
}