@article{lin359030,
title = {Hahella chejuensis is the etiological agent of a novel red egg disease in tilapia (Oreochromis spp.) hatcheries in Thailand},
author = {Senapin S, Dong HT, Meemetta W, Siriphongphaew A, Charoensapsri W, Santimanawong W, Turner WA, Rodkhum C, Withyachumnarnkul B, Vanichviriyakit R.},
journal = {Aquaculture},
year = {2016},
doi = {10.1016/j.aquaculture.2015.12.013},
}
@article{lin51414,
title = {Hahella chejuensis gen. nov., sp. nov., an extracellular-polysaccharide-producing marine bacterium.},
author = {Lee HK, Chun J, Moon EY, Ko SH, Lee DS, Lee HS, Bae KS},
journal = {Int J Syst Evol Microbiol},
year = {2001},
doi = {10.1099/00207713-51-2-661},
pmid = {11321112}
}
@article{lin359093,
title = {Identification of genes and proteins necessary for catabolism of acyclic terpenes and leucine/isovalerate in Pseudomonas aeruginosa.},
author = {Forster-Fromme K, Hoschle B, Mack C, Bott M, Armbruster W, Jendrossek D.},
journal = {Appl Environ Microbiol},
year = {2006},
doi = {10.1128/aem.00853-06},
pmid = {16820476}
}
@article{lin359056,
title = {Isolation and characterization of a novel lipase from a metagenomic library of tidal flat sediments: evidence for a new family of bacterial lipases.},
author = {Lee MH, Lee CH, Oh TK, Song JK, Yoon JH.},
journal = {Appl Environ Microbiol},
year = {2006},
doi = {10.1128/aem.01157-06},
pmid = {16950897}
}
@article{lin359071,
title = {Transposon Tn7 is widespread in diverse bacteria and forms genomic islands.},
author = {Parks AR, Peters JE.},
journal = {J Bacteriol},
year = {2007},
doi = {10.1128/jb.01536-06},
pmid = {17194796}
}
@article{lin359098,
title = {A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides.},
author = {Poggio S, Abreu-Goodger C, Fabela S, Osorio A, Dreyfus G, Vinuesa P, Camarena L.},
journal = {J Bacteriol},
year = {2007},
doi = {10.1128/jb.01681-06},
pmid = {17293429}
}
@article{lin51413,
title = {Biosynthesis of antibiotic prodiginines in the marine bacterium Hahella chejuensis KCTC 2396.},
author = {Kim D, Lee JS, Park YK, Kim JF, Jeong H, Oh TK, Kim BS, Lee CH},
journal = {J Appl Microbiol},
year = {2007},
doi = {10.1111/j.1365-2672.2006.03172.x},
pmid = {17381736}
}
@article{lin359082,
title = {The copper-inducible cin operon encodes an unusual methionine-rich azurin-like protein and a pre-Q0 reductase in Pseudomonas putida KT2440.},
author = {Quaranta D, McCarty R, Bandarian V, Rensing C.},
journal = {J Bacteriol},
year = {2007},
doi = {10.1128/jb.00377-07},
pmid = {17483220}
}
@article{lin359113,
title = {Three putative cation/proton antiporters from the soda lake alkaliphile Alkalimonas amylolytica N10 complement an alkali-sensitive Escherichia coli mutant.},
author = {Wei Y, Liu J, Ma Y, Krulwich TA.},
journal = {Microbiology (Reading)},
year = {2007},
doi = {10.1099/mic.0.2007/007450-0},
pmid = {17600061}
}
@article{lin359105,
title = {Characterization of phenylpyruvate decarboxylase, involved in auxin production of Azospirillum brasilense.},
author = {Spaepen S, Versees W, Gocke D, Pohl M, Steyaert J, Vanderleyden J.},
journal = {J Bacteriol},
year = {2007},
doi = {10.1128/jb.00830-07},
pmid = {17766418}
}
@article{lin359116,
title = {Stenotrophomonas maltophilia SeITE02, a new bacterial strain suitable for bioremediation of selenite-contaminated environmental matrices.},
author = {Antonioli P, Lampis S, Chesini I, Vallini G, Rinalducci S, Zolla L, Righetti PG.},
journal = {Appl Environ Microbiol},
year = {2007},
doi = {10.1128/aem.00957-07},
pmid = {17827320}
}
@article{lin359103,
title = {Evolution and functional characterization of the RH50 gene from the ammonia-oxidizing bacterium Nitrosomonas europaea.},
author = {Cherif-Zahar B, Durand A, Schmidt I, Hamdaoui N, Matic I, Merrick M, Matassi G.},
journal = {J Bacteriol},
year = {2007},
doi = {10.1128/jb.01089-07},
pmid = {17921289}
}
@article{lin359066,
title = {MetaLook: a 3D visualisation software for marine ecological genomics.},
author = {Lombardot T, Kottmann R, Giuliani G, de Bono A, Addor N, Glockner FO.},
journal = {BMC Bioinformatics},
year = {2007},
doi = {10.1186/1471-2105-8-406},
pmid = {17953757}
}
@article{lin359072,
title = {The [FeFe] hydrogenase of Nyctotherus ovalis has a chimeric origin.},
author = {Boxma B, Ricard G, van Hoek AH, Severing E, Moon-van der Staay SY, van der Staay GW, van Alen TA, de Graaf RM, Cremers G, Kwantes M, McEwan NR, Newbold CJ, Jouany JP, Michalowski T, Pristas P, Huynen MA, Hackstein JH.},
journal = {BMC Evol Biol},
year = {2007},
doi = {10.1186/1471-2148-7-230},
pmid = {18021395}
}
@article{lin359108,
title = {Identification of prophages in bacterial genomes by dinucleotide relative abundance difference.},
author = {Srividhya KV, Alaguraj V, Poornima G, Kumar D, Singh GP, Raghavenderan L, Katta AV, Mehta P, Krishnaswamy S.},
journal = {PLoS One},
year = {2007},
doi = {10.1371/journal.pone.0001193},
pmid = {18030328}
}
@article{lin359094,
title = {Characterization of a novel gene, wosA, regulating FlhDC expression in Proteus mirabilis.},
author = {Hatt JK, Rather PN.},
journal = {J Bacteriol},
year = {2008},
doi = {10.1128/jb.01010-07},
pmid = {18192389}
}
@article{lin359081,
title = {Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes.},
author = {Bohlin J, Skjerve E, Ussery DW.},
journal = {BMC Genomics},
year = {2008},
doi = {10.1186/1471-2164-9-104},
pmid = {18307761}
}
@article{lin359119,
title = {The temperate marine phage PhiHAP-1 of Halomonas aquamarina possesses a linear plasmid-like prophage genome.},
author = {Mobberley JM, Authement RN, Segall AM, Paul JH.},
journal = {J Virol},
year = {2008},
doi = {10.1128/jvi.00140-08},
pmid = {18448537}
}
@article{lin359087,
title = {Hydrogen peroxide linked to lysine oxidase activity facilitates biofilm differentiation and dispersal in several gram-negative bacteria.},
author = {Mai-Prochnow A, Lucas-Elio P, Egan S, Thomas T, Webb JS, Sanchez-Amat A, Kjelleberg S.},
journal = {J Bacteriol},
year = {2008},
doi = {10.1128/jb.00549-08},
pmid = {18502869}
}
@article{lin359084,
title = {Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T.},
author = {Weiner RM, Taylor LE, Henrissat B, Hauser L, Land M, Coutinho PM, Rancurel C, Saunders EH, Longmire AG, Zhang H, Bayer EA, Gilbert HJ, Larimer F, Zhulin IB, Ekborg NA, Lamed R, Richardson PM, Borovok I, Hutcheson S.},
journal = {PLoS Genet},
year = {2008},
doi = {10.1371/journal.pgen.1000087},
pmid = {18516288}
}
@article{lin51412,
title = {Mutant selection of Hahella chejuensis KCTC 2396 and statistical optimization of medium components for prodigiosin yield-up.},
author = {Kim SJ, Lee HK, Lee YK, Yim JH},
journal = {J Microbiol},
year = {2008},
doi = {10.1007/s12275-008-0037-y},
pmid = {18545968}
}
@article{lin359089,
title = {Phosphorus deprivation responses and phosphonate utilization in a thermophilic Synechococcus sp. from microbial mats.},
author = {Adams MM, Gomez-Garcia MR, Grossman AR, Bhaya D.},
journal = {J Bacteriol},
year = {2008},
doi = {10.1128/jb.01011-08},
pmid = {18931115}
}
@article{lin359075,
title = {Tn7 elements: engendering diversity from chromosomes to episomes.},
author = {Parks AR, Peters JE.},
journal = {Plasmid},
year = {2009},
doi = {10.1016/j.plasmid.2008.09.008},
pmid = {18951916}
}
@article{lin359100,
title = {Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes.},
author = {Suzuki H, Sota M, Brown CJ, Top EM.},
journal = {Nucleic Acids Res},
year = {2008},
doi = {10.1093/nar/gkn753},
pmid = {18953039}
}
@article{lin51411,
title = {Red to red - the marine bacterium Hahella chejuensis and its product prodigiosin for mitigation of harmful algal blooms.},
author = {Kim D, Kim JF, Yim JH, Kwon SK, Lee CH, Lee HK},
journal = {J Microbiol Biotechnol},
year = {2008},
doi = {8099},
pmid = {18955809}
}
@article{lin359102,
title = {Noncellulosomal cohesin- and dockerin-like modules in the three domains of life.},
author = {Peer A, Smith SP, Bayer EA, Lamed R, Borovok I.},
journal = {FEMS Microbiol Lett},
year = {2009},
doi = {10.1111/j.1574-6968.2008.01420.x},
pmid = {19025568}
}
@article{lin359101,
title = {Systematic prediction of control proteins and their DNA binding sites.},
author = {Sorokin V, Severinov K, Gelfand MS.},
journal = {Nucleic Acids Res},
year = {2009},
doi = {10.1093/nar/gkn931},
pmid = {19056824}
}
@article{lin51410,
title = {Statistical optimization of medium components for the production of prodigiosin by Hahella chejuensis KCTC 2396.},
author = {Kim SJ, Lee HK, Yim JH},
journal = {J Microbiol Biotechnol},
year = {2008},
doi = {8139},
pmid = {19131691}
}
@article{lin359121,
title = {Pivotal roles of the outer membrane polysaccharide export and polysaccharide copolymerase protein families in export of extracellular polysaccharides in gram-negative bacteria.},
author = {Cuthbertson L, Mainprize IL, Naismith JH, Whitfield C.},
journal = {Microbiol Mol Biol Rev},
year = {2009},
doi = {10.1128/mmbr.00024-08},
pmid = {19258536}
}
@article{lin359083,
title = {In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles.},
author = {Lin FP, Coiera E, Lan R, Sintchenko V.},
journal = {BMC Bioinformatics},
year = {2009},
doi = {10.1186/1471-2105-10-86},
pmid = {19292914}
}
@article{lin359077,
title = {dndDB: a database focused on phosphorothioation of the DNA backbone.},
author = {Ou HY, He X, Shao Y, Tai C, Rajakumar K, Deng Z.},
journal = {PLoS One},
year = {2009},
doi = {10.1371/journal.pone.0005132},
pmid = {19357771}
}
@article{lin359114,
title = {Novel toxin-antitoxin system composed of serine protease and AAA-ATPase homologues determines the high level of stability and incompatibility of the tumor-inducing plasmid pTiC58.},
author = {Yamamoto S, Kiyokawa K, Tanaka K, Moriguchi K, Suzuki K.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.00124-09},
pmid = {19447904}
}
@article{lin359090,
title = {The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).},
author = {Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D, Toms BS, Henrissat B, Coutinho PM, Schwarz S, Field L, Trindade-Silva AE, Soares CA, Elshahawi S, Hanora A, Schmidt EW, Haygood MG, Posfai J, Benner J, Madinger C, Nove J, Anton B, Chaudhary K, Foster J, Holman A, Kumar S, Lessard PA, Luyten YA, Slatko B, Wood N, Wu B, Teplitski M, Mougous JD, Ward N, Eisen JA, Badger JH, Distel DL.},
journal = {PLoS One},
year = {2009},
doi = {10.1371/journal.pone.0006085},
pmid = {19568419}
}
@article{lin359080,
title = {Processive endoglucanases mediate degradation of cellulose by Saccharophagus degradans.},
author = {Watson BJ, Zhang H, Longmire AG, Moon YH, Hutcheson SW.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.00481-09},
pmid = {19617364}
}
@article{lin359115,
title = {Single-residue changes in the C-terminal disulfide-bonded loop of the Pseudomonas aeruginosa type IV pilin influence pilus assembly and twitching motility.},
author = {Harvey H, Habash M, Aidoo F, Burrows LL.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.00943-09},
pmid = {19717595}
}
@article{lin359104,
title = {The dif/Xer recombination systems in proteobacteria.},
author = {Carnoy C, Roten CA.},
journal = {PLoS One},
year = {2009},
doi = {10.1371/journal.pone.0006531},
pmid = {19727445}
}
@article{lin359117,
title = {Zinc-independent folate biosynthesis: genetic, biochemical, and structural investigations reveal new metal dependence for GTP cyclohydrolase IB.},
author = {Sankaran B, Bonnett SA, Shah K, Gabriel S, Reddy R, Schimmel P, Rodionov DA, de Crecy-Lagard V, Helmann JD, Iwata-Reuyl D, Swairjo MA.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.00287-09},
pmid = {19767425}
}
@article{lin359099,
title = {A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life.},
author = {Haas CE, Rodionov DA, Kropat J, Malasarn D, Merchant SS, de Crecy-Lagard V.},
journal = {BMC Genomics},
year = {2009},
doi = {10.1186/1471-2164-10-470},
pmid = {19822009}
}
@article{lin359085,
title = {Structures of yeast glutathione-S-transferase Gtt2 reveal a new catalytic type of GST family.},
author = {Ma XX, Jiang YL, He YX, Bao R, Chen Y, Zhou CZ.},
journal = {EMBO Rep},
year = {2009},
doi = {10.1038/embor.2009.216},
pmid = {19851333}
}
@article{lin359041,
title = {Genome-wide screening and identification of factors affecting the biosynthesis of prodigiosin by Hahella chejuensis, using Escherichia coli as a surrogate host.},
author = {Kwon SK, Park YK, Kim JF.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.01468-09},
pmid = {20038694}
}
@article{lin359079,
title = {Sequence and structural analysis of the chitinase insertion domain reveals two conserved motifs involved in chitin-binding.},
author = {Li H, Greene LH.},
journal = {PLoS One},
year = {2010},
doi = {10.1371/journal.pone.0008654},
pmid = {20084296}
}
@article{lin359074,
title = {A novel host-specific restriction system associated with DNA backbone S-modification in Salmonella.},
author = {Xu T, Yao F, Zhou X, Deng Z, You D.},
journal = {Nucleic Acids Res},
year = {2010},
doi = {10.1093/nar/gkq610},
pmid = {20627870}
}
@article{lin359112,
title = {Nutrient-regulated transcriptional responses in the brown tide-forming alga Aureococcus anophagefferens.},
author = {Wurch LL, Haley ST, Orchard ED, Gobler CJ, Dyhrman ST.},
journal = {Environ Microbiol},
year = {2011},
doi = {10.1111/j.1462-2920.2010.02351.x},
pmid = {20880332}
}
@article{lin359068,
title = {In silico characterization of pectate lyase protein sequences from different source organisms.},
author = {Dubey AK, Yadav S, Kumar M, Singh VK, Sarangi BK, Yadav D.},
journal = {Enzyme Res},
year = {2010},
doi = {10.4061/2010/950230},
pmid = {21048874}
}
@article{lin359118,
title = {Distribution analysis of hydrogenases in surface waters of marine and freshwater environments.},
author = {Barz M, Beimgraben C, Staller T, Germer F, Opitz F, Marquardt C, Schwarz C, Gutekunst K, Vanselow KH, Schmitz R, LaRoche J, Schulz R, Appel J.},
journal = {PLoS One},
year = {2010},
doi = {10.1371/journal.pone.0013846},
pmid = {21079771}
}
@article{lin359067,
title = {Structural properties of 2/2 hemoglobins: the group III protein from Helicobacter hepaticus.},
author = {Nothnagel HJ, Winer BY, Vuletich DA, Pond MP, Lecomte JT.},
journal = {IUBMB Life},
year = {2011},
doi = {10.1002/iub.430},
pmid = {21445851}
}
@article{lin359120,
title = {Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.},
author = {Silverio AL, Saier MH.},
journal = {J Membr Biol},
year = {2011},
doi = {10.1007/s00232-011-9364-8},
pmid = {21519847}
}
@article{lin359042,
title = {Exceptional production of both prodigiosin and cycloprodigiosin as major metabolic constituents by a novel marine bacterium, Zooshikella rubidus S1-1.},
author = {Lee JS, Kim YS, Park S, Kim J, Kang SJ, Lee MH, Ryu S, Choi JM, Oh TK, Yoon JH.},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/aem.01986-10},
pmid = {21642414}
}
@article{lin359106,
title = {Genomic analysis reveals versatile organisms for quorum quenching enzymes: acyl-homoserine lactone-acylase and -lactonase.},
author = {Kalia VC, Raju SC, Purohit HJ.},
journal = {Open Microbiol J},
year = {2011},
doi = {10.2174/1874285801105010001},
pmid = {21660112}
}
@article{lin359078,
title = {Linking hydrothermal geochemistry to organismal physiology: physiological versatility in Riftia pachyptila from sedimented and basalt-hosted vents.},
author = {Robidart JC, Roque A, Song P, Girguis PR.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0021692},
pmid = {21779334}
}
@article{lin359059,
title = {Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076.},
author = {Challacombe JF, Eichorst SA, Hauser L, Land M, Xie G, Kuske CR.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0024882},
pmid = {21949776}
}
@article{lin359062,
title = {Bioactive pigments from marine bacteria: applications and physiological roles.},
author = {Soliev AB, Hosokawa K, Enomoto K.},
journal = {Evid Based Complement Alternat Med},
year = {2011},
doi = {10.1155/2011/670349},
pmid = {21961023}
}
@article{lin359038,
title = {Genomic and Experimental Evidence Suggests that Verrucomicrobium spinosum Interacts with Eukaryotes.},
author = {Sait M, Kamneva OK, Fay DS, Kirienko NV, Polek J, Shirasu-Hiza MM, Ward NL.},
journal = {Front Microbiol},
year = {2011},
doi = {10.3389/fmicb.2011.00211},
pmid = {22022322}
}
@article{lin359107,
title = {Comparative genomics study of polyhydroxyalkanoates (PHA) and ectoine relevant genes from Halomonas sp. TD01 revealed extensive horizontal gene transfer events and co-evolutionary relationships.},
author = {Cai L, Tan D, Aibaidula G, Dong XR, Chen JC, Tian WD, Chen GQ.},
journal = {Microb Cell Fact},
year = {2011},
doi = {10.1186/1475-2859-10-88},
pmid = {22040376}
}
@article{lin359043,
title = {Draft genome sequence of Halomonas sp. strain HAL1, a moderately halophilic arsenite-oxidizing bacterium isolated from gold-mine soil.},
author = {Lin Y, Fan H, Hao X, Johnstone L, Hu Y, Wei G, Alwathnani HA, Wang G, Rensing C.},
journal = {J Bacteriol},
year = {2012},
doi = {10.1128/jb.06359-11},
pmid = {22156396}
}
@article{lin359110,
title = {GlyGly-CTERM and rhombosortase: a C-terminal protein processing signal in a many-to-one pairing with a rhomboid family intramembrane serine protease.},
author = {Haft DH, Varghese N.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0028886},
pmid = {22194940}
}
@article{lin359073,
title = {Characterization of species-specific repeats in 613 prokaryotic species.},
author = {Koressaar T, Remm M.},
journal = {DNA Res},
year = {2012},
doi = {10.1093/dnares/dss006},
pmid = {22368180}
}
@article{lin359096,
title = {Improved thermostability of Clostridium thermocellum endoglucanase Cel8A by using consensus-guided mutagenesis.},
author = {Anbar M, Gul O, Lamed R, Sezerman UO, Bayer EA.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.07985-11},
pmid = {22389377}
}
@article{lin359091,
title = {Plasmid pP62BP1 isolated from an Arctic Psychrobacter sp. strain carries two highly homologous type II restriction-modification systems and a putative organic sulfate metabolism operon.},
author = {Lasek R, Dziewit L, Bartosik D.},
journal = {Extremophiles},
year = {2012},
doi = {10.1007/s00792-012-0435-2},
pmid = {22392282}
}
@article{lin359092,
title = {Novel metagenome-derived, cold-adapted alkaline phospholipase with superior lipase activity as an intermediate between phospholipase and lipase.},
author = {Lee MH, Oh KH, Kang CH, Kim JH, Oh TK, Ryu CM, Yoon JH.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.00260-12},
pmid = {22544255}
}
@article{lin359052,
title = {Transcriptional and functional studies of a Cd(II)/Pb(II)-responsive transcriptional regulator(CmtR) from Acidithiobacillus ferrooxidans ATCC 23270.},
author = {Zheng C, Li Y, Nie L, Qian L, Cai L, Liu J.},
journal = {Curr Microbiol},
year = {2012},
doi = {10.1007/s00284-012-0117-4},
pmid = {22555344}
}
@article{lin359060,
title = {Comparative analysis of two phenotypically-similar but genomically-distinct Burkholderia cenocepacia-specific bacteriophages.},
author = {Lynch KH, Stothard P, Dennis JJ, Dennis JJ.},
journal = {BMC Genomics},
year = {2012},
doi = {10.1186/1471-2164-13-223},
pmid = {22676492}
}
@article{lin359061,
title = {Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction.},
author = {Redondo-Nieto M, Barret M, Morrissey J, Germaine K, Martinez-Granero F, Barahona E, Navazo A, Sanchez-Contreras M, Moynihan JA, Muriel C, Dowling D, O'Gara F, Martin M, Rivilla R.},
journal = {BMC Genomics},
year = {2013},
doi = {10.1186/1471-2164-14-54},
pmid = {23350846}
}
@article{lin359122,
title = {Nitrate and periplasmic nitrate reductases.},
author = {Sparacino-Watkins C, Stolz JF, Basu P.},
journal = {Chem Soc Rev},
year = {2014},
doi = {10.1039/c3cs60249d},
pmid = {24141308}
}
@article{lin359088,
title = {Turnerbactin, a novel triscatecholate siderophore from the shipworm endosymbiont Teredinibacter turnerae T7901.},
author = {Han AW, Sandy M, Fishman B, Trindade-Silva AE, Soares CA, Distel DL, Butler A, Haygood MG.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0076151},
pmid = {24146831}
}
@article{lin359051,
title = {Characterization of the Pseudomonas aeruginosa metalloendopeptidase, Mep72, a member of the Vfr regulon.},
author = {Balyimez A, Colmer-Hamood JA, San Francisco M, Hamood AN.},
journal = {BMC Microbiol},
year = {2013},
doi = {10.1186/1471-2180-13-269},
pmid = {24279383}
}
@article{lin51409,
title = {Characterization of modular bifunctional processive endoglucanase Cel5 from Hahella chejuensis KCTC 2396.},
author = {Ghatge SS, Telke AA, Kang SH, Arulalapperumal V, Lee KW, Govindwar SP, Um Y, Oh DB, Shin HD, Kim SW},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-013-5446-0},
pmid = {24343767}
}
@article{lin359049,
title = {Production of prodigiosin using tannery fleshing and evaluating its pharmacological effects.},
author = {Sumathi C, MohanaPriya D, Swarnalatha S, Dinesh MG, Sekaran G.},
journal = {ScientificWorldJournal},
year = {2014},
doi = {10.1155/2014/290327},
pmid = {24587717}
}
@article{lin359065,
title = {A novel algicide: evidence of the effect of a fatty acid compound from the marine bacterium, Vibrio sp. BS02 on the harmful dinoflagellate, Alexandrium tamarense.},
author = {Li D, Zhang H, Fu L, An X, Zhang B, Li Y, Chen Z, Zheng W, Yi L, Zheng T.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0091201},
pmid = {24626054}
}
@article{lin359111,
title = {Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.},
author = {Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.},
journal = {Genes (Basel)},
year = {2011},
doi = {10.3390/genes2040869},
pmid = {24710297}
}
@article{lin359069,
title = {Veillonella, Firmicutes: Microbes disguised as Gram negatives.},
author = {Vesth T, Ozen A, Andersen SC, Kaas RS, Lukjancenko O, Bohlin J, Nookaew I, Wassenaar TM, Ussery DW.},
journal = {Stand Genomic Sci},
year = {2013},
doi = {10.4056/sigs.2981345},
pmid = {24976898}
}
@article{lin359055,
title = {Identification of novel glycosyl hydrolases with cellulolytic activity against crystalline cellulose from metagenomic libraries constructed from bacterial enrichment cultures.},
author = {Mori T, Kamei I, Hirai H, Kondo R.},
journal = {Springerplus},
year = {2014},
doi = {10.1186/2193-1801-3-365},
pmid = {25077068}
}
@article{lin359086,
title = {Pre_GI: a global map of ontological links between horizontally transferred genomic islands in bacterial and archaeal genomes.},
author = {Pierneef R, Cronje L, Bezuidt O, Reva ON.},
journal = {Database (Oxford)},
year = {2015},
doi = {10.1093/database/bav058},
pmid = {26200753}
}
@article{lin359048,
title = {Structures of exoglucanase from Clostridium cellulovorans: cellotetraose binding and cleavage.},
author = {Tsai LC, Amiraslanov I, Chen HR, Chen YW, Lee HL, Liang PH, Liaw YC.},
journal = {Acta Crystallogr F Struct Biol Commun},
year = {2015},
doi = {10.1107/s2053230x15015915},
pmid = {26457517}
}
@article{lin359050,
title = {The chitinase C gene PsChiC from Pseudomonas sp. and its synergistic effects on larvicidal activity.},
author = {Zhong W, Ding S, Guo H.},
journal = {Genet Mol Biol},
year = {2015},
doi = {10.1590/s1415-475738320140320},
pmid = {26500441}
}
@article{lin359095,
title = {Genomic Insight into the Host-Endosymbiont Relationship of Endozoicomonas montiporae CL-33(T) with its Coral Host.},
author = {Ding JY, Shiu JH, Chen WM, Chiang YR, Tang SL.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.00251},
pmid = {27014194}
}
@article{lin51407,
title = {Allohahella marinimesophila gen. nov., sp. nov., isolated from seawater and reclassification of Hahella antarctica as Allohahella antarctica comb. nov.},
author = {Han Y, Zhao R, Yu T, Li Z, Zhang XH},
journal = {Int J Syst Evol Microbiol},
year = {2016},
doi = {10.1099/ijsem.0.001174},
pmid = {27216767}
}
@article{lin51408,
title = {Increased incorporation of gaseous CO2 into succinate by Escherichia coli overexpressing carbonic anhydrase and phosphoenolpyruvate carboxylase genes.},
author = {Park S, Lee JU, Cho S, Kim H, Oh HB, Pack SP, Lee J},
journal = {J Biotechnol},
year = {2016},
doi = {10.1016/j.jbiotec.2016.11.027},
pmid = {27908774}
}
@article{lin359064,
title = {Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts.},
author = {Neave MJ, Michell CT, Apprill A, Voolstra CR.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/srep40579},
pmid = {28094347}
}
@article{lin359070,
title = {The N-Acetylmuramic Acid 6-Phosphate Phosphatase MupP Completes the Pseudomonas Peptidoglycan Recycling Pathway Leading to Intrinsic Fosfomycin Resistance.},
author = {Borisova M, Gisin J, Mayer C.},
journal = {mBio},
year = {2017},
doi = {10.1128/mbio.00092-17},
pmid = {28351914}
}
@article{lin51406,
title = {Convergence of DNA methylation and phosphorothioation epigenetics in bacterial genomes.},
author = {Chen C, Wang L, Chen S, Wu X, Gu M, Chen X, Jiang S, Wang Y, Deng Z, Dedon PC, Chen S},
journal = {Proc Natl Acad Sci U S A},
year = {2017},
doi = {10.1073/pnas.1702450114},
pmid = {28400512}
}
@article{lin359039,
title = {The genome analysis of Oleiphilus messinensis ME102 (DSM 13489T) reveals backgrounds of its obligate alkane-devouring marine lifestyle.},
author = {Toshchakov SV, Korzhenkov AA, Chernikova TN, Ferrer M, Golyshina OV, Yakimov MM, Golyshin PN.},
journal = {Mar Genomics},
year = {2017},
doi = {10.1016/j.margen.2017.07.005},
pmid = {28802691}
}
@article{lin359047,
title = {Domestication of Lambda Phage Genes into a Putative Third Type of Replicative Helicase Matchmaker.},
author = {Brezellec P, Petit MA, Pasek S, Vallet-Gely I, Possoz C, Ferat JL.},
journal = {Genome Biol Evol},
year = {2017},
doi = {10.1093/gbe/evx111},
pmid = {28854626}
}
@article{lin359097,
title = {A bifunctional cellulase-xylanase of a new Chryseobacterium strain isolated from the dung of a straw-fed cattle.},
author = {Tan H, Miao R, Liu T, Yang L, Yang Y, Chen C, Lei J, Li Y, He J, Sun Q, Peng W, Gan B, Huang Z.},
journal = {Microb Biotechnol},
year = {2018},
doi = {10.1111/1751-7915.13034},
pmid = {29205864}
}
@article{lin359036,
title = {Aquatic Pseudomonads Inhibit Oomycete Plant Pathogens of Glycine max.},
author = {Wagner A, Norris S, Chatterjee P, Morris PF, Wildschutte H.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01007},
pmid = {29896163}
}
@article{lin359076,
title = {Comparative Genomics Reveals Evidence of Genome Reduction and High Extracellular Protein Degradation Potential in Kangiella.},
author = {Wang J, Lu Y, Nawaz MZ, Xu J.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01224},
pmid = {29930545}
}
@article{lin359053,
title = {Biological Potential and Mechanism of Prodigiosin from Serratia marcescens Subsp. lawsoniana in Human Choriocarcinoma and Prostate Cancer Cell Lines.},
author = {Li D, Liu J, Wang X, Kong D, Du W, Li H, Hse CY, Shupe T, Zhou D, Zhao K.},
journal = {Int J Mol Sci},
year = {2018},
doi = {10.3390/ijms19113465},
pmid = {30400387}
}
@article{lin359054,
title = {A new type of DNA phosphorothioation-based antiviral system in archaea.},
author = {Xiong L, Liu S, Chen S, Xiao Y, Zhu B, Gao Y, Zhang Y, Chen B, Luo J, Deng Z, Chen X, Wang L, Chen S.},
journal = {Nat Commun},
year = {2019},
doi = {10.1038/s41467-019-09390-9},
pmid = {30975999}
}
@article{lin359040,
title = {Loss of Serine-Type D-Ala-D-Ala Carboxypeptidase DacA Enhances Prodigiosin Production in Serratia marcescens.},
author = {Pan X, Sun C, Tang M, Liu C, Zhang J, You J, Osire T, Sun Y, Zhao Y, Xu M, Yang T, Rao Z.},
journal = {Front Bioeng Biotechnol},
year = {2019},
doi = {10.3389/fbioe.2019.00367},
pmid = {31850328}
}
@article{lin359044,
title = {An Indonesian Marine Bacterium, Pseudoalteromonas rubra, Produces Antimicrobial Prodiginine Pigments.},
author = {Setiyono E, Adhiwibawa MAS, Indrawati R, Prihastyanti MNU, Shioi Y, Brotosudarmo THP.},
journal = {ACS Omega},
year = {2020},
doi = {10.1021/acsomega.9b04322},
pmid = {32175509}
}
@article{lin359046,
title = {Production and Potential Applications of Bioconversion of Chitin and Protein-Containing Fishery Byproducts into Prodigiosin: A Review.},
author = {Wang SL, Nguyen VB, Doan CT, Tran TN, Nguyen MT, Nguyen AD.},
journal = {Molecules},
year = {2020},
doi = {10.3390/molecules25122744},
pmid = {32545769}
}
@article{lin359035,
title = {Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6.},
author = {Jouault A, Gobet A, Simon M, Portier E, Perennou M, Corre E, Gaillard F, Vallenet D, Michel G, Fleury Y, Bazire A, Dufour A.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.00893-20},
pmid = {32769182}
}
@article{lin359063,
title = {Spartinivicinus ruber gen. nov., sp. nov., a Novel Marine Gammaproteobacterium Producing Heptylprodigiosin and Cycloheptylprodigiosin as Major Red Pigments.},
author = {Huang Z, Dong L, Lai Q, Liu J.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.02056},
pmid = {32983041}
}
@article{lin359027,
title = {Effects of Hahella chejuensis-Derived Prodigiosin on UV-Induced ROS Production, Inflammation and Cytotoxicity in HaCaT Human Skin Keratinocytes.},
author = {Lee J, Kim HJ, Lee SJ, Lee MS.},
journal = {J Microbiol Biotechnol},
year = {2021},
doi = {10.4014/jmb.2011.11024},
pmid = {33397835}
}
@article{lin359109,
title = {Information theoretic perspective on genome clustering.},
author = {Veluchamy A, Mehta P, Srividhya KV, Vikram H, Govind MK, Gupta R, Aziz Bin Dukhyil A, Abdullah Alharbi R, Abdullah Aloyuni S, Hassan MM, Krishnaswamy S.},
journal = {Saudi J Biol Sci},
year = {2021},
doi = {10.1016/j.sjbs.2020.12.039},
pmid = {33732074}
}
@article{lin359034,
title = {Biosynthesis of the Tricyclic Aromatic Type II Polyketide Rishirilide: New Potential Third Ring Oxygenation after Three Cyclization Steps.},
author = {Alali A, Zhang L, Li J, Zuo C, Wassouf D, Yan X, Schwarzer P, Gunther S, Einsle O, Bechthold A.},
journal = {Mol Biotechnol},
year = {2021},
doi = {10.1007/s12033-021-00314-x},
pmid = {33763824}
}
@article{lin359045,
title = {Ecological and Biotechnological Aspects of Pigmented Microbes: A Way Forward in Development of Food and Pharmaceutical Grade Pigments.},
author = {Chatragadda R, Dufosse L.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9030637},
pmid = {33803896}
}
@article{lin359037,
title = {SspABCD-SspFGH Constitutes a New Type of DNA Phosphorothioate-Based Bacterial Defense System.},
author = {Wang S, Wan M, Huang R, Zhang Y, Xie Y, Wei Y, Ahmad M, Wu D, Hong Y, Deng Z, Chen S, Li Z, Wang L.},
journal = {mBio},
year = {2021},
doi = {10.1128/mbio.00613-21},
pmid = {33906925}
}
@article{lin359057,
title = {Harnessing microbial wealth for lignocellulose biomass valorization through secretomics: a review.},
author = {Sethupathy S, Morales GM, Li Y, Wang Y, Jiang J, Sun J, Zhu D.},
journal = {Biotechnol Biofuels},
year = {2021},
doi = {10.1186/s13068-021-02006-9},
pmid = {34225772}
}
@article{lin359022,
title = {Enhanced Large-Scale Production of Hahella chejuensis-Derived Prodigiosin and Evaluation of Its Bioactivity.},
author = {Jeong Y, Kim HJ, Kim S, Park SY, Kim H, Jeong S, Lee SJ, Lee MS.},
journal = {J Microbiol Biotechnol},
year = {2021},
doi = {10.4014/jmb.2109.09039},
pmid = {34675142}
}
@article{lin359026,
title = {Identification and Verification of the Prodigiosin Biosynthetic Gene Cluster (BGC) in Pseudoalteromonas rubra S4059.},
author = {Wang X, Isbrandt T, Christensen EO, Melchiorsen J, Larsen TO, Zhang SD, Gram L.},
journal = {Microbiol Spectr},
year = {2021},
doi = {10.1128/spectrum.01171-21},
pmid = {34724731}
}
@article{lin359028,
title = {Complete Genome Analysis of Undecylprodigiosin Pigment Biosynthesizing Marine Streptomyces Species Displaying Potential Bioactive Applications.},
author = {Ramesh C, Anwesh M, Vinithkumar NV, Kirubagaran R, Dufosse L.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9112249},
pmid = {34835376}
}
@article{lin359024,
title = {Discovery of New Secondary Metabolites from Marine Bacteria Hahella Based on an Omics Strategy.},
author = {He S, Li P, Wang J, Zhang Y, Lu H, Shi L, Huang T, Zhang W, Ding L, He S, Liu L.},
journal = {Mar Drugs},
year = {2022},
doi = {10.3390/md20040269},
pmid = {35447942}
}
@article{lin359029,
title = {Study on the Anticancer Activity of Prodigiosin from Variants of Serratia Marcescens QBN VTCC 910026.},
author = {Nguyen SLT, Nguyen TC, Do TT, Vu TL, Nguyen TT, Do TT, Nguyen THT, Le TH, Trinh DK, Nguyen TAT.},
journal = {Biomed Res Int},
year = {2022},
doi = {10.1155/2022/4053074},
pmid = {35509712}
}
@article{lin359058,
title = {Genome mining reveals abiotic stress resistance genes in plant genomes acquired from microbes via HGT.},
author = {Li L, Peng S, Wang Z, Zhang T, Li H, Xiao Y, Li J, Liu Y, Yin H.},
journal = {Front Plant Sci},
year = {2022},
doi = {10.3389/fpls.2022.1025122},
pmid = {36407614}
}
@article{lin359032,
title = {Characterization of a novel bifunctional enzyme from buffalo rumen metagenome and its effect on in vitro ruminal fermentation and microbial community composition.},
author = {Meng Z, Ma J, Sun Z, Yang C, Leng J, Zhu W, Cheng Y.},
journal = {Anim Nutr},
year = {2023},
doi = {10.1016/j.aninu.2023.01.004},
pmid = {37123618}
}
@article{lin359031,
title = {Multimeric structure of a subfamily III haloalkane dehalogenase-like enzyme solved by combination of cryo-EM and x-ray crystallography.},
author = {Chmelova K, Gao T, Polak M, Schenkmayerova A, Croll TI, Shaikh TR, Skarupova J, Chaloupkova R, Diederichs K, Read RJ, Damborsky J, Novacek J, Marek M.},
journal = {Protein Sci},
year = {2023},
doi = {10.1002/pro.4751},
pmid = {37574754}
}
@article{lin359025,
title = {Transcriptomic analysis of the antimicrobial activity of prodigiosin against Cutibacterium acnes.},
author = {Kim HJ, Lee MS, Jeong SK, Lee SJ.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-44612-7},
pmid = {37833344}
}
@article{lin359023,
title = {Prodigiosin: unveiling the crimson wonder - a comprehensive journey from diverse bioactivity to synthesis and yield enhancement.},
author = {Lu Y, Liu D, Jiang R, Li Z, Gao X.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1412776},
pmid = {38903802}
}
@article{lin359021,
title = {Genomic insights into host-Endozoicomonadaceae cophylogeny.},
author = {Shao Z, Zhang J, Li J, Li J.},
journal = {Microb Genom},
year = {2025},
doi = {10.1099/mgen.0.001384},
pmid = {40178518}
}
@article{lin359033,
title = {Discovery and engineering of bifunctional enzymes for lignocellulose degradation: Metagenomic and computational approaches.},
author = {Goudarzi R, Jahanshahi DA, Kavousi A, Ariaeenejad S.},
journal = {Biotechnol Rep (Amst)},
year = {2025},
doi = {10.1016/j.btre.2025.e00926},
pmid = {41078880}
}