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title = {Xiaoyao San ameliorates maternal inflammation-induced neurobehavioral deficits by modulating the microbiota-gut-brain axis in offspring},
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title = {Goat milk oligosaccharides improve growth and gut microbiota composition in stunted mice},
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title = {Gut microbiota dysbiosis and metabolic shifts in pediatric norovirus infection: a metagenomic study in Northeast China},
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year = {2025},
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title = {Study on characteristics of gut flora composition of pregnant women with preeclampsia},
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journal = {BMC Pregnancy Childbirth},
year = {2025},
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title = {Sickle Cell Disease and Gut Health: The Influence of Intestinal Parasites and the Microbiome on Angolan Children},
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title = {Gut Dysbiosis Shaped by Cocoa Butter-Based Sucrose-Free HFD Leads to Steatohepatitis, and Insulin Resistance in Mice},
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title = {The association between gut microbiota composition and cardiometabolic parameters in healthy adults},
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title = {Dynamic relationship between gut microbiota and post-necrotizing pancreatitis: insights from a multi-stage 16S rRNA sequencing study},
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title = {Cardiac function of colorectal cancer mice is remotely controlled by gut microbiota: regulating serum metabolites and myocardial cytokines},
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journal = {Anim Microbiome},
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title = {Sex-specific gut microbiome dynamics in Labeo catla: links to reproductive hormones, metabolic dimorphism, and environmental factors},
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title = {Gestational exposure to HIV drugs alters intestinal mucosa-associated microbial diversity in adult rat offspring},
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title = {Exploring fecal microbiota signatures associated with immune response and antibiotic impact in NSCLC: insights from metagenomic and machine learning approaches},
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title = {Fermentation characteristics of Megasphaera elsdenii J6 derived from pig feces on different lactate isomers},
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title = {gyrA mutations associated with quinolone resistance in Bacteroides fragilis group strains.},
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title = {Extensive profiling of a complex microbial community by high-throughput sequencing.},
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title = {Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism.},
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journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.1.501-506.2005},
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@article{lin81404,
title = {In vitro antianaerobic activity of DX-619, a new des-fluoro(6) quinolone.},
author = {Tanaka K, Mikamo H, Nakao K, Watanabe K.},
journal = {Antimicrob Agents Chemother},
year = {2006},
doi = {10.1128/aac.00639-06},
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title = {Bacteroides barnesiae sp. nov., Bacteroides salanitronis sp. nov. and Bacteroides gallinarum sp. nov., isolated from chicken caecum.},
author = {Lan PTN, Sakamoto M, Sakata S, Benno Y},
journal = {Int J Syst Evol Microbiol},
year = {2006},
doi = {10.1099/ijs.0.64517-0},
pmid = {17158987}
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@article{lin81385,
title = {A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria.},
author = {Chakravorty S, Helb D, Burday M, Connell N, Alland D.},
journal = {J Microbiol Methods},
year = {2007},
doi = {10.1016/j.mimet.2007.02.005},
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title = {Multivariate analysis of complex DNA sequence electropherograms for high-throughput quantitative analysis of mixed microbial populations.},
author = {Trosvik P, Skanseng B, Jakobsen KS, Stenseth NC, Naes T, Rudi K.},
journal = {Appl Environ Microbiol},
year = {2007},
doi = {10.1128/aem.00128-07},
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@article{lin81304,
title = {Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly.},
author = {Collado MC, Derrien M, Isolauri E, de Vos WM, Salminen S.},
journal = {Appl Environ Microbiol},
year = {2007},
doi = {10.1128/aem.01477-07},
pmid = {17933936}
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@article{lin81420,
title = {Evolutionary primacy of sodium bioenergetics.},
author = {Mulkidjanian AY, Galperin MY, Makarova KS, Wolf YI, Koonin EV.},
journal = {Biol Direct},
year = {2008},
doi = {10.1186/1745-6150-3-13},
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@article{lin81386,
title = {In vitro activity of tomopenem (CS-023/RO4908463) against anaerobic bacteria.},
author = {Tanaka K, Mikamo H, Nakao K, Ichiishi T, Goto T, Yamagishi Y, Watanabe K.},
journal = {Antimicrob Agents Chemother},
year = {2009},
doi = {10.1128/aac.00595-08},
pmid = {18955522}
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@article{lin81418,
title = {The decay of the chromosomally encoded ccdO157 toxin-antitoxin system in the Escherichia coli species.},
author = {Mine N, Guglielmini J, Wilbaux M, Van Melderen L.},
journal = {Genetics},
year = {2009},
doi = {10.1534/genetics.108.095190},
pmid = {19189956}
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@article{lin81417,
title = {Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota.},
author = {Martinez I, Wallace G, Zhang C, Legge R, Benson AK, Carr TP, Moriyama EN, Walter J.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.00380-09},
pmid = {19411417}
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@article{lin81367,
title = {Functional characterization of the antibiotic resistance reservoir in the human microflora.},
author = {Sommer MOA, Dantas G, Church GM.},
journal = {Science},
year = {2009},
doi = {10.1126/science.1176950},
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title = {Bacteroides chinchillae sp. nov. and Bacteroides rodentium sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces.},
author = {Kitahara M, Tsuchida S, Kawasumi K, Amao H, Sakamoto M, Benno Y, Ohkuma M},
journal = {Int J Syst Evol Microbiol},
year = {2010},
doi = {10.1099/ijs.0.024026-0},
pmid = {20495039}
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@article{lin81375,
title = {Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes.},
author = {Tasse L, Bercovici J, Pizzut-Serin S, Robe P, Tap J, Klopp C, Cantarel BL, Coutinho PM, Henrissat B, Leclerc M, Dore J, Monsan P, Remaud-Simeon M, Potocki-Veronese G.},
journal = {Genome Res},
year = {2010},
doi = {10.1101/gr.108332.110},
pmid = {20841432}
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title = {Intestinal Bacteroides species associated with coeliac disease.},
author = {Sanchez E, Donat E, Ribes-Koninckx C, Calabuig M, Sanz Y.},
journal = {J Clin Pathol},
year = {2010},
doi = {10.1136/jcp.2010.076950},
pmid = {20972239}
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@article{lin81409,
title = {Rapid stool-based diagnosis of Clostridium difficile infection by real-time PCR in a children's hospital.},
author = {Luna RA, Boyanton BL, Mehta S, Courtney EM, Webb CR, Revell PA, Versalovic J.},
journal = {J Clin Microbiol},
year = {2011},
doi = {10.1128/jcm.01983-10},
pmid = {21209161}
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@article{lin81389,
title = {In vitro antimicrobial activity of razupenem (SMP-601, PTZ601) against anaerobic bacteria.},
author = {Tran CM, Tanaka K, Yamagishi Y, Goto T, Mikamo H, Watanabe K.},
journal = {Antimicrob Agents Chemother},
year = {2011},
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@article{lin81424,
title = {Evolution of the oligopeptide transporter family.},
author = {Gomolplitinant KM, Saier MH.},
journal = {J Membr Biol},
year = {2011},
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title = {Application of quantitative real-time PCR for rapid identification of Bacteroides fragilis group and related organisms in human wound samples.},
author = {Tong J, Liu C, Summanen P, Xu H, Finegold SM.},
journal = {Anaerobe},
year = {2011},
doi = {10.1016/j.anaerobe.2011.03.004},
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@article{lin81423,
title = {Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.},
author = {Silverio AL, Saier MH.},
journal = {J Membr Biol},
year = {2011},
doi = {10.1007/s00232-011-9364-8},
pmid = {21519847}
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title = {Bacteroides uniformis is a putative bacterial species associated with the degradation of the isoflavone genistein in human feces.},
author = {Renouf M, Hendrich S.},
journal = {J Nutr},
year = {2011},
doi = {10.3945/jn.111.140988},
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@article{lin81366,
title = {Extending the aerolysin family: from bacteria to vertebrates.},
author = {Szczesny P, Iacovache I, Muszewska A, Ginalski K, van der Goot FG, Grynberg M.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0020349},
pmid = {21687664}
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@article{lin81380,
title = {Fish oil enhances recovery of intestinal microbiota and epithelial integrity in chronic rejection of intestinal transplant.},
author = {Li Q, Zhang Q, Wang C, Tang C, Zhang Y, Li N, Li J.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0020460},
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title = {In vitro culture conditions for maintaining a complex population of human gastrointestinal tract microbiota.},
author = {Kim BS, Kim JN, Cerniglia CE.},
journal = {J Biomed Biotechnol},
year = {2011},
doi = {10.1155/2011/838040},
pmid = {21811382}
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title = {Characterization and scope of S-layer protein O-glycosylation in Tannerella forsythia.},
author = {Posch G, Pabst M, Brecker L, Altmann F, Messner P, Schaffer C.},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.m111.284893},
pmid = {21911490}
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@article{lin81394,
title = {Molecular-phylogenetic characterization of the microbiota in ulcerated and non-ulcerated regions in the patients with Crohn's disease.},
author = {Li Q, Wang C, Tang C, Li N, Li J.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0034939},
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title = {Influence of red wine polyphenols and ethanol on the gut microbiota ecology and biochemical biomarkers.},
author = {Queipo-Ortuno MI, Boto-Ordonez M, Murri M, Gomez-Zumaquero JM, Clemente-Postigo M, Estruch R, Cardona Diaz F, Andres-Lacueva C, Tinahones FJ.},
journal = {Am J Clin Nutr},
year = {2012},
doi = {10.3945/ajcn.111.027847},
pmid = {22552027}
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@article{lin400291,
title = {Production of secoisolariciresinol from defatted flaxseed by bacterial biotransformation.},
author = {Li MX, Zhu HY, Yang DH, Ma XQ, Wang CZ, Cai SQ, Liu GR, Ku BS, Liu SL.},
journal = {J Appl Microbiol},
year = {2012},
doi = {10.1111/j.1365-2672.2012.05436.x},
pmid = {22924993}
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@article{lin81372,
title = {Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants.},
author = {Arias MC, Danchin EG, Coutinho P, Henrissat B, Ball S.},
journal = {Mob Genet Elements},
year = {2012},
doi = {10.4161/mge.20375},
pmid = {22934241}
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@article{lin81284,
title = {Gut bacterial profile in patients newly diagnosed with treatment-naïve Crohn's disease.},
author = {Ricanek P, Lothe SM, Frye SA, Rydning A, Vatn MH, Tonjum T.},
journal = {Clin Exp Gastroenterol},
year = {2012},
doi = {10.2147/ceg.s33858},
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@article{lin400294,
title = {Identification of feces by detection of Bacteroides genes.},
author = {Nakanishi H, Shojo H, Ohmori T, Hara M, Takada A, Adachi N, Saito K.},
journal = {Forensic Sci Int Genet},
year = {2013},
doi = {10.1016/j.fsigen.2012.09.006},
pmid = {23068949}
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@article{lin400163,
title = {Analysis of a novel 8.9kb cryptic plasmid from Bacteroides uniformis, its long-term stability and spread within human microbiota.},
author = {Shkoporov AN, Khokhlova EV, Kulagina EV, Smeianov VV, Kuchmiy AA, Kafarskaya LI, Efimov BA.},
journal = {Plasmid},
year = {2013},
doi = {10.1016/j.plasmid.2012.11.002},
pmid = {23201047}
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@article{lin400282,
title = {Temporal change in the gut community of rats fed high amylose cornstarch is driven by endogenous urea rather than strictly on carbohydrate availability.},
author = {Kalmokoff M, Zwicker B, O'Hara M, Matias F, Green J, Shastri P, Green-Johnson J, Brooks SP.},
journal = {J Appl Microbiol},
year = {2013},
doi = {10.1111/jam.12157},
pmid = {23383759}
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@article{lin400247,
title = {Ethnic diversity of gut microbiota: species characterization of Bacteroides fragilis group and genus Bifidobacterium in healthy Belgian adults, and comparison with data from Japanese subjects.},
author = {Ishikawa E, Matsuki T, Kubota H, Makino H, Sakai T, Oishi K, Kushiro A, Fujimoto J, Watanabe K, Watanuki M, Tanaka R.},
journal = {J Biosci Bioeng},
year = {2013},
doi = {10.1016/j.jbiosc.2013.02.010},
pmid = {23522670}
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@article{lin81353,
title = {Functional screening of a metagenomic library reveals operons responsible for enhanced intestinal colonization by gut commensal microbes.},
author = {Yoon MY, Lee KM, Yoon Y, Go J, Park Y, Cho YJ, Tannock GW, Yoon SS.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.00581-13},
pmid = {23584783}
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@article{lin81400,
title = {pH gradient and distribution of streptococci, lactobacilli, prevotellae, and fusobacteria in carious dentine.},
author = {Kianoush N, Nguyen KA, Browne GV, Simonian M, Hunter N.},
journal = {Clin Oral Investig},
year = {2014},
doi = {10.1007/s00784-013-1009-0},
pmid = {23771212}
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@article{lin81285,
title = {Molecular diversity of rumen bacterial communities from tannin-rich and fiber-rich forage fed domestic Sika deer (Cervus nippon) in China.},
author = {Li ZP, Liu HL, Li GY, Bao K, Wang KY, Xu C, Yang YF, Yang FH, Wright AD.},
journal = {BMC Microbiol},
year = {2013},
doi = {10.1186/1471-2180-13-151},
pmid = {23834656}
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@article{lin400241,
title = {Multi-centre evaluation of mass spectrometric identification of anaerobic bacteria using the VITEK® MS system.},
author = {Garner O, Mochon A, Branda J, Burnham CA, Bythrow M, Ferraro M, Ginocchio C, Jennemann R, Manji R, Procop GW, Richter S, Rychert J, Sercia L, Westblade L, Lewinski M.},
journal = {Clin Microbiol Infect},
year = {2014},
doi = {10.1111/1469-0691.12317},
pmid = {23927597}
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@article{lin4561,
title = {Cloning, expression, and characterization of the beta-glucosidase hydrolyzing secoisolariciresinol diglucoside to secoisolariciresinol from Bacteroides uniformis ZL1.},
author = {Tao YL, Yang DH, Zhang YT, Zhang Y, Wang ZQ, Wang YS, Cai SQ, Liu SL},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-013-5111-7},
pmid = {23942877}
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@article{lin81419,
title = {Role of glycoside phosphorylases in mannose foraging by human gut bacteria.},
author = {Ladeveze S, Tarquis L, Cecchini DA, Bercovici J, Andre I, Topham CM, Morel S, Laville E, Monsan P, Lombard V, Henrissat B, Potocki-Veronese G.},
journal = {J Biol Chem},
year = {2013},
doi = {10.1074/jbc.m113.483628},
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@article{lin400200,
title = {Future for probiotic science in functional food and dietary supplement development.},
author = {Neef A, Sanz Y.},
journal = {Curr Opin Clin Nutr Metab Care},
year = {2013},
doi = {10.1097/mco.0b013e328365c258},
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@article{lin400207,
title = {Isolation of Bacteroides from fish and human fecal samples for identification of unique molecular markers.},
author = {Kabiri L, Alum A, Rock C, McLain JE, Abbaszadegan M.},
journal = {Can J Microbiol},
year = {2013},
doi = {10.1139/cjm-2013-0518},
pmid = {24313449}
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@article{lin81382,
title = {Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks.},
author = {Ravcheev DA, Godzik A, Osterman AL, Rodionov DA.},
journal = {BMC Genomics},
year = {2013},
doi = {10.1186/1471-2164-14-873},
pmid = {24330590}
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@article{lin81303,
title = {Phylogenetic analysis of faecal microbiota from captive cheetahs reveals underrepresentation of Bacteroidetes and Bifidobacteriaceae.},
author = {Becker AA, Hesta M, Hollants J, Janssens GP, Huys G.},
journal = {BMC Microbiol},
year = {2014},
doi = {10.1186/1471-2180-14-43},
pmid = {24548488}
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@article{lin400149,
title = {Senior Thai fecal microbiota comparison between vegetarians and non-vegetarians using PCR-DGGE and real-time PCR.},
author = {Ruengsomwong S, Korenori Y, Sakamoto N, Wannissorn B, Nakayama J, Nitisinprasert S.},
journal = {J Microbiol Biotechnol},
year = {2014},
doi = {10.4014/jmb.1310.10043},
pmid = {24743571}
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@article{lin81398,
title = {Evidence of extensive DNA transfer between bacteroidales species within the human gut.},
author = {Coyne MJ, Zitomersky NL, McGuire AM, Earl AM, Comstock LE.},
journal = {mBio},
year = {2014},
doi = {10.1128/mbio.01305-14},
pmid = {24939888}
}
@article{lin81390,
title = {Glycobiology Aspects of the Periodontal Pathogen Tannerella forsythia.},
author = {Posch G, Sekot G, Friedrich V, Megson ZA, Koerdt A, Messner P, Schaffer C.},
journal = {Biomolecules},
year = {2012},
doi = {10.3390/biom2040467},
pmid = {24970146}
}
@article{lin81377,
title = {Crystal structures of three representatives of a new Pfam family PF14869 (DUF4488) suggest they function in sugar binding/uptake.},
author = {Kumar A, Punta M, Axelrod HL, Das D, Farr CL, Grant JC, Chiu HJ, Miller MD, Coggill PC, Klock HE, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA.},
journal = {Protein Sci},
year = {2014},
doi = {10.1002/pro.2522},
pmid = {25044324}
}
@article{lin81342,
title = {Structure-guided functional characterization of DUF1460 reveals a highly specific NlpC/P60 amidase family.},
author = {Xu Q, Mengin-Lecreulx D, Patin D, Grant JC, Chiu HJ, Jaroszewski L, Knuth MW, Godzik A, Lesley SA, Elsliger MA, Deacon AM, Wilson IA.},
journal = {Structure},
year = {2014},
doi = {10.1016/j.str.2014.09.018},
pmid = {25465128}
}
@article{lin400290,
title = {[Bacteria isolated from surgical infections and its susceptibilities to antimicrobial agents - Special references to bacteria isolated between April 2011 and March 2012].},
author = {Shinagawa N, Taniguchi M, Hirata K, Furuhata T, Mizuguchi T, Osanai H, Yanai Y, Hata F, Kihara C, Sasaki K, Oono K, Nakamura M, Shibuya H, Hasegawa I, Kimura M, Watabe K, Hoshikawa T, Oshima H, Aikawa N, Sasaki J, Suzuki M, Sekine K, Abe S, Takeyama H, Wakasugi T, Mashita K, Tanaka M, Mizuno A, Ishikawa M, Iwai A, Saito T, Muramoto M, Kubo S, Lee S, Fukuhara K, Kobayashi Y, Yamaue H, Hirono S, Takesue Y, Fujiwara T, Shinoura S, Kimura H, Iwagaki H, Tokunaga N, Sueda T, Hiyama E, Murakami Y, Ohge H, Uemura K, Tsumura H, Kanehiro T, Takeuchi H, Tanakaya K, Iwasaki M.},
journal = {Jpn J Antibiot},
year = {2014},
pmid = {25796741}
}
@article{lin81388,
title = {Dps and DpsL Mediate Survival In Vitro and In Vivo during the Prolonged Oxidative Stress Response in Bacteroides fragilis.},
author = {Betteken MI, Rocha ER, Smith CJ.},
journal = {J Bacteriol},
year = {2015},
doi = {10.1128/jb.00342-15},
pmid = {26260459}
}
@article{lin81357,
title = {In silico identification of bacteriocin gene clusters in the gastrointestinal tract, based on the Human Microbiome Project's reference genome database.},
author = {Walsh CJ, Guinane CM, Hill C, Ross RP, O'Toole PW, Cotter PD.},
journal = {BMC Microbiol},
year = {2015},
doi = {10.1186/s12866-015-0515-4},
pmid = {26377179}
}
@article{lin399995,
title = {Brain abscess due to Aggregatibacter aphrophilus and Bacteroides uniformis.},
author = {Bogdan M, Zujic Atalic V, Hecimovic I, Vukovic D.},
journal = {Acta Med Acad},
year = {2015},
doi = {10.5644/ama2006-124.144},
pmid = {26702912}
}
@article{lin81373,
title = {Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements.},
author = {Coyne MJ, Roelofs KG, Comstock LE.},
journal = {BMC Genomics},
year = {2016},
doi = {10.1186/s12864-016-2377-z},
pmid = {26768901}
}
@article{lin81401,
title = {Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.},
author = {Dubinkina VB, Ischenko DS, Ulyantsev VI, Tyakht AV, Alexeev DG.},
journal = {BMC Bioinformatics},
year = {2016},
doi = {10.1186/s12859-015-0875-7},
pmid = {26774270}
}
@article{lin400071,
title = {Reduced Abundance of Butyrate-Producing Bacteria Species in the Fecal Microbial Community in Crohn's Disease.},
author = {Takahashi K, Nishida A, Fujimoto T, Fujii M, Shioya M, Imaeda H, Inatomi O, Bamba S, Sugimoto M, Andoh A.},
journal = {Digestion},
year = {2016},
doi = {10.1159/000441768},
pmid = {26789999}
}
@article{lin81275,
title = {Bacterial species involved in the conversion of dietary flavonoids in the human gut.},
author = {Braune A, Blaut M.},
journal = {Gut Microbes},
year = {2016},
doi = {10.1080/19490976.2016.1158395},
pmid = {26963713}
}
@article{lin81282,
title = {Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study.},
author = {Odamaki T, Kato K, Sugahara H, Hashikura N, Takahashi S, Xiao JZ, Abe F, Osawa R.},
journal = {BMC Microbiol},
year = {2016},
doi = {10.1186/s12866-016-0708-5},
pmid = {27220822}
}
@article{lin81296,
title = {Quantification of Slackia and Eggerthella spp. in Human Feces and Adhesion of Representatives Strains to Caco-2 Cells.},
author = {Cho GS, Ritzmann F, Eckstein M, Huch M, Briviba K, Behsnilian D, Neve H, Franz CM.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.00658},
pmid = {27242689}
}
@article{lin400045,
title = {Microbial Community of Healthy Thai Vegetarians and Non-Vegetarians, Their Core Gut Microbiota, and Pathogen Risk.},
author = {Ruengsomwong S, La-Ongkham O, Jiang J, Wannissorn B, Nakayama J, Nitisinprasert S.},
journal = {J Microbiol Biotechnol},
year = {2016},
doi = {10.4014/jmb.1603.03057},
pmid = {27381339}
}
@article{lin81413,
title = {Proteomic indicators of oxidation and hydration state in colorectal cancer.},
author = {Dick JM.},
journal = {PeerJ},
year = {2016},
doi = {10.7717/peerj.2238},
pmid = {27547546}
}
@article{lin81359,
title = {Bacteroidales Secreted Antimicrobial Proteins Target Surface Molecules Necessary for Gut Colonization and Mediate Competition In Vivo.},
author = {Roelofs KG, Coyne MJ, Gentyala RR, Chatzidaki-Livanis M, Comstock LE.},
journal = {mBio},
year = {2016},
doi = {10.1128/mbio.01055-16},
pmid = {27555309}
}
@article{lin400103,
title = {Identification of vaginal fluid, saliva, and feces using microbial signatures in a Han Chinese population.},
author = {Zou KN, Ren LJ, Ping Y, Ma K, Li H, Cao Y, Zhou HG, Wei YL.},
journal = {J Forensic Leg Med},
year = {2016},
doi = {10.1016/j.jflm.2016.08.003},
pmid = {27570236}
}
@article{lin81410,
title = {A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility.},
author = {Desai MS, Seekatz AM, Koropatkin NM, Kamada N, Hickey CA, Wolter M, Pudlo NA, Kitamoto S, Terrapon N, Muller A, Young VB, Henrissat B, Wilmes P, Stappenbeck TS, Nunez G, Martens EC.},
journal = {Cell},
year = {2016},
doi = {10.1016/j.cell.2016.10.043},
pmid = {27863247}
}
@article{lin81364,
title = {A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic.},
author = {Patrascu O, Beguet-Crespel F, Marinelli L, Le Chatelier E, Abraham AL, Leclerc M, Klopp C, Terrapon N, Henrissat B, Blottiere HM, Dore J, Bera-Maillet C.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/srep40248},
pmid = {28091525}
}
@article{lin81300,
title = {Diastereomer-specific quantification of bioactive hexosylceramides from bacteria and mammals.},
author = {von Gerichten J, Schlosser K, Lamprecht D, Morace I, Eckhardt M, Wachten D, Jennemann R, Grone HJ, Mack M, Sandhoff R.},
journal = {J Lipid Res},
year = {2017},
doi = {10.1194/jlr.d076190},
pmid = {28373486}
}
@article{lin81279,
title = {Glucuronides in the gut: Sugar-driven symbioses between microbe and host.},
author = {Pellock SJ, Redinbo MR.},
journal = {J Biol Chem},
year = {2017},
doi = {10.1074/jbc.r116.767434},
pmid = {28389557}
}
@article{lin81406,
title = {Tunable Expression Tools Enable Single-Cell Strain Distinction in the Gut Microbiome.},
author = {Whitaker WR, Shepherd ES, Sonnenburg JL.},
journal = {Cell},
year = {2017},
doi = {10.1016/j.cell.2017.03.041},
pmid = {28431251}
}
@article{lin400326,
title = {Gut Dysbiosis and Neurobehavioral Alterations in Rats Exposed to Silver Nanoparticles.},
author = {Javurek AB, Suresh D, Spollen WG, Hart ML, Hansen SA, Ellersieck MR, Bivens NJ, Givan SA, Upendran A, Kannan R, Rosenfeld CS.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/s41598-017-02880-0},
pmid = {28588204}
}
@article{lin81291,
title = {Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets.},
author = {Walker A, Pfitzner B, Harir M, Schaubeck M, Calasan J, Heinzmann SS, Turaev D, Rattei T, Endesfelder D, Castell WZ, Haller D, Schmid M, Hartmann A, Schmitt-Kopplin P.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/s41598-017-10369-z},
pmid = {28887494}
}
@article{lin81330,
title = {The Glycolytic Versatility of Bacteroides uniformis CECT 7771 and Its Genome Response to Oligo and Polysaccharides.},
author = {Benitez-Paez A, Gomez Del Pulgar EM, Sanz Y.},
journal = {Front Cell Infect Microbiol},
year = {2017},
doi = {10.3389/fcimb.2017.00383},
pmid = {28971068}
}
@article{lin81360,
title = {Discovery of alpha-l-arabinopyranosidases from human gut microbiome expands the diversity within glycoside hydrolase family 42.},
author = {Viborg AH, Katayama T, Arakawa T, Abou Hachem M, Lo Leggio L, Kitaoka M, Svensson B, Fushinobu S.},
journal = {J Biol Chem},
year = {2017},
doi = {10.1074/jbc.m117.792598},
pmid = {29061847}
}
@article{lin81408,
title = {Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice.},
author = {Mark Welch JL, Hasegawa Y, McNulty NP, Gordon JI, Borisy GG.},
journal = {Proc Natl Acad Sci U S A},
year = {2017},
doi = {10.1073/pnas.1711596114},
pmid = {29073107}
}
@article{lin399980,
title = {In vitro effects of inulin and soya bean oligosaccharide on skatole production and the intestinal microbiota in broilers.},
author = {Liu HY, Hou R, Yang GQ, Zhao F, Dong WG.},
journal = {J Anim Physiol Anim Nutr (Berl)},
year = {2018},
doi = {10.1111/jpn.12830},
pmid = {29105163}
}
@article{lin81341,
title = {Peptidoglycan synthesis in Tannerella forsythia: Scavenging is the modus operandi.},
author = {Ruscitto A, Sharma A.},
journal = {Mol Oral Microbiol},
year = {2018},
doi = {10.1111/omi.12210},
pmid = {29247483}
}
@article{lin399935,
title = {In vitro fermentation of Cookeina speciosa glucans stimulates the growth of the butyrogenic Clostridium cluster XIVa in a targeted way.},
author = {Cantu-Jungles TM, Ruthes AC, El-Hindawy M, Moreno RB, Zhang X, Cordeiro LMC, Hamaker BR, Iacomini M.},
journal = {Carbohydr Polym},
year = {2018},
doi = {10.1016/j.carbpol.2017.12.020},
pmid = {29352878}
}
@article{lin81362,
title = {In Vitro and In Vivo Activities of DS-2969b, a Novel GyrB Inhibitor, against Clostridium difficile.},
author = {Mathur T, Barman TK, Kumar M, Singh D, Kumar R, Khera MK, Yamada M, Inoue SI, Upadhyay DJ, Masuda N.},
journal = {Antimicrob Agents Chemother},
year = {2018},
doi = {10.1128/aac.02157-17},
pmid = {29439962}
}
@article{lin81368,
title = {The Biosynthesis of Lipooligosaccharide from Bacteroides thetaiotaomicron.},
author = {Jacobson AN, Choudhury BP, Fischbach MA.},
journal = {mBio},
year = {2018},
doi = {10.1128/mbio.02289-17},
pmid = {29535205}
}
@article{lin81336,
title = {Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.},
author = {Pluvinage B, Grondin JM, Amundsen C, Klassen L, Moote PE, Xiao Y, Thomas D, Pudlo NA, Anele A, Martens EC, Inglis GD, Uwiera RER, Boraston AB, Abbott DW.},
journal = {Nat Commun},
year = {2018},
doi = {10.1038/s41467-018-03366-x},
pmid = {29535379}
}
@article{lin400355,
title = {At-hatch administration of probiotic to chickens can introduce beneficial changes in gut microbiota.},
author = {Baldwin S, Hughes RJ, Hao Van TT, Moore RJ, Stanley D.},
journal = {PLoS One},
year = {2018},
doi = {10.1371/journal.pone.0194825},
pmid = {29570728}
}
@article{lin399907,
title = {Bariatric surgery drives major rearrangements of the intestinal microbiota including the biofilm composition.},
author = {Campisciano G, Cason C, Palmisano S, Giuricin M, Rizzardi A, Croce LS, De Manzini N, Comar M.},
journal = {Front Biosci (Elite Ed)},
year = {2018},
doi = {10.2741/e836},
pmid = {29772522}
}
@article{lin400394,
title = {Uterine Sarcoma Presenting with Sepsis from Clostridium perfringens Endometritis in a Postmenopausal Woman.},
author = {Kao MJ, Roy M, Harter J, Spencer RJ.},
journal = {Case Rep Obstet Gynecol},
year = {2018},
doi = {10.1155/2018/8217296},
pmid = {29850320}
}
@article{lin81298,
title = {Deciphering microbial interactions in synthetic human gut microbiome communities.},
author = {Venturelli OS, Carr AC, Fisher G, Hsu RH, Lau R, Bowen BP, Hromada S, Northen T, Arkin AP.},
journal = {Mol Syst Biol},
year = {2018},
doi = {10.15252/msb.20178157},
pmid = {29930200}
}
@article{lin81340,
title = {Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life.},
author = {Yassour M, Jason E, Hogstrom LJ, Arthur TD, Tripathi S, Siljander H, Selvenius J, Oikarinen S, Hyoty H, Virtanen SM, Ilonen J, Ferretti P, Pasolli E, Tett A, Asnicar F, Segata N, Vlamakis H, Lander ES, Huttenhower C, Knip M, Xavier RJ.},
journal = {Cell Host Microbe},
year = {2018},
doi = {10.1016/j.chom.2018.06.007},
pmid = {30001517}
}
@article{lin81278,
title = {Probiotics in human gut microbiota can degrade host glycosaminoglycans.},
author = {Kawai K, Kamochi R, Oiki S, Murata K, Hashimoto W.},
journal = {Sci Rep},
year = {2018},
doi = {10.1038/s41598-018-28886-w},
pmid = {30006634}
}
@article{lin81393,
title = {The Stringent Response Determines the Ability of a Commensal Bacterium to Survive Starvation and to Persist in the Gut.},
author = {Schofield WB, Zimmermann-Kogadeeva M, Zimmermann M, Barry NA, Goodman AL.},
journal = {Cell Host Microbe},
year = {2018},
doi = {10.1016/j.chom.2018.06.002},
pmid = {30008292}
}
@article{lin81411,
title = {A selective gut bacterial bile salt hydrolase alters host metabolism.},
author = {Yao L, Seaton SC, Ndousse-Fetter S, Adhikari AA, DiBenedetto N, Mina AI, Banks AS, Bry L, Devlin AS.},
journal = {Elife},
year = {2018},
doi = {10.7554/elife.37182},
pmid = {30014852}
}
@article{lin81351,
title = {Collaborating genomic, transcriptomic and microbiomic alterations lead to canine extreme intestinal polyposis.},
author = {Wang J, Wang T, Bishop MA, Edwards JF, Yin H, Dalton S, Bryan LK, Bryan LK, Zhao S.},
journal = {Oncotarget},
year = {2018},
doi = {10.18632/oncotarget.25646},
pmid = {30018743}
}
@article{lin81392,
title = {A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection.},
author = {Jacobson A, Lam L, Rajendram M, Tamburini F, Honeycutt J, Pham T, Van Treuren W, Pruss K, Stabler SR, Lugo K, Bouley DM, Vilches-Moure JG, Smith M, Sonnenburg JL, Bhatt AS, Huang KC, Monack D.},
journal = {Cell Host Microbe},
year = {2018},
doi = {10.1016/j.chom.2018.07.002},
pmid = {30057174}
}
@article{lin399904,
title = {Chronic nonbacterial prostate inflammation in a rat model is associated with changes of gut microbiota that can be modified with a galactoglucomannan-rich hemicellulose extract in the diet.},
author = {Konkol Y, Keskitalo A, Vuorikoski H, Pietila S, Elo LL, Munukka E, Bernoulli J, Tuomela J.},
journal = {BJU Int},
year = {2019},
doi = {10.1111/bju.14553},
pmid = {30256506}
}
@article{lin400385,
title = {Molecular Alteration Analysis of Human Gut Microbial Composition in Graves' disease Patients.},
author = {Ishaq HM, Mohammad IS, Shahzad M, Ma C, Raza MA, Wu X, Guo H, Shi P, Xu J.},
journal = {Int J Biol Sci},
year = {2018},
doi = {10.7150/ijbs.24151},
pmid = {30263008}
}
@article{lin400193,
title = {Association of dietary fibre intake and gut microbiota in adults.},
author = {Lin D, Peters BA, Friedlander C, Freiman HJ, Goedert JJ, Sinha R, Miller G, Bernstein MA, Hayes RB, Ahn J.},
journal = {Br J Nutr},
year = {2018},
doi = {10.1017/s0007114518002465},
pmid = {30355393}
}
@article{lin399898,
title = {[Associations of Socioeconomic Factors,Nutrients Intake,and Gut Microbiota of Healthy Pregnant Women in the Third Trimester with Gestational Weight Gain].},
author = {Ma LK, Xue Y, He TC, Zhang YM.},
journal = {Zhongguo Yi Xue Ke Xue Yuan Xue Bao},
year = {2018},
doi = {10.3881/j.issn.1000-503x.10505},
pmid = {30404694}
}
@article{lin399878,
title = {Microbial Intervention as a Novel Target in Treatment of Non-Alcoholic Fatty Liver Disease Progression.},
author = {Zhou Y, Zheng T, Chen H, Li Y, Huang H, Chen W, Du Y, He J, Li Y, Cao J, Nie Y, Zhou Y.},
journal = {Cell Physiol Biochem},
year = {2018},
doi = {10.1159/000495830},
pmid = {30522122}
}
@article{lin399902,
title = {New Insights into Porcine Milk N-Glycome and the Potential Relation with Offspring Gut Microbiome.},
author = {Mu C, Cai Z, Bian G, Du Y, Ma S, Su Y, Liu L, Voglmeir J, Huang R, Zhu W.},
journal = {J Proteome Res},
year = {2019},
doi = {10.1021/acs.jproteome.8b00789},
pmid = {30576150}
}
@article{lin400110,
title = {Composition of the intestinal microbiota in extended-spectrum beta-lactamase-producing Enterobacteriaceae carriers and non-carriers in Thailand.},
author = {Piewngam P, Quinones M, Thirakittiwatthana W, Yungyuen T, Otto M, Kiratisin P.},
journal = {Int J Antimicrob Agents},
year = {2019},
doi = {10.1016/j.ijantimicag.2018.12.006},
pmid = {30578963}
}
@article{lin81350,
title = {Structural and Functional Insights into PpgL, a Metal-Independent beta-Propeller Gluconolactonase That Contributes to Pseudomonas aeruginosa Virulence.},
author = {Song YJ, Wang KL, Shen YL, Gao J, Li T, Zhu YB, Li CC, He LH, Zhou QX, Zhao NL, Zhao C, Yang J, Huang Q, Mu XY, Li H, Dou DF, Liu C, He JH, Sun B, Bao R.},
journal = {Infect Immun},
year = {2019},
doi = {10.1128/iai.00847-18},
pmid = {30642898}
}
@article{lin399759,
title = {Spatial variations in intestinal skatole production and microbial composition in broilers.},
author = {Yang G, Zhang P, Liu H, Zhu X, Dong W.},
journal = {Anim Sci J},
year = {2019},
doi = {10.1111/asj.13164},
pmid = {30656801}
}
@article{lin81391,
title = {Taxonomic profiling and populational patterns of bacterial bile salt hydrolase (BSH) genes based on worldwide human gut microbiome.},
author = {Song Z, Cai Y, Lao X, Wang X, Lin X, Cui Y, Kalavagunta PK, Liao J, Jin L, Shang J, Li J.},
journal = {Microbiome},
year = {2019},
doi = {10.1186/s40168-019-0628-3},
pmid = {30674356}
}
@article{lin400198,
title = {Selecting a Single Stereocenter: The Molecular Nuances That Differentiate beta-Hexuronidases in the Human Gut Microbiome.},
author = {Pellock SJ, Walton WG, Redinbo MR.},
journal = {Biochemistry},
year = {2019},
doi = {10.1021/acs.biochem.8b01285},
pmid = {30729778}
}
@article{lin81395,
title = {Compositional changes to the ileal microbiome precede the onset of spontaneous ileitis in SHIP deficient mice.},
author = {Dobranowski PA, Tang C, Sauve JP, Menzies SC, Sly LM.},
journal = {Gut Microbes},
year = {2019},
doi = {10.1080/19490976.2018.1560767},
pmid = {30760087}
}
@article{lin400409,
title = {D-methionine alleviates cisplatin-induced mucositis by restoring the gut microbiota structure and improving intestinal inflammation.},
author = {Wu CH, Ko JL, Liao JM, Huang SS, Lin MY, Lee LH, Chang LY, Ou CC.},
journal = {Ther Adv Med Oncol},
year = {2019},
doi = {10.1177/1758835918821021},
pmid = {30792823}
}
@article{lin400396,
title = {1,25(OH)2D3 deficiency-induced gut microbial dysbiosis degrades the colonic mucus barrier in Cyp27b1 knockout mouse model.},
author = {Zhu W, Yan J, Zhi C, Zhou Q, Yuan X.},
journal = {Gut Pathog},
year = {2019},
doi = {10.1186/s13099-019-0291-z},
pmid = {30828386}
}
@article{lin81387,
title = {Autometa: automated extraction of microbial genomes from individual shotgun metagenomes.},
author = {Miller IJ, Rees ER, Ross J, Miller I, Baxa J, Lopera J, Kerby RL, Rey FE, Kwan JC.},
journal = {Nucleic Acids Res},
year = {2019},
doi = {10.1093/nar/gkz148},
pmid = {30838416}
}
@article{lin81378,
title = {The Use of Defined Microbial Communities To Model Host-Microbe Interactions in the Human Gut.},
author = {Elzinga J, van der Oost J, de Vos WM, Smidt H.},
journal = {Microbiol Mol Biol Rev},
year = {2019},
doi = {10.1128/mmbr.00054-18},
pmid = {30867232}
}
@article{lin81299,
title = {Procyanidin-Cell Wall Interactions within Apple Matrices Decrease the Metabolization of Procyanidins by the Human Gut Microbiota and the Anti-Inflammatory Effect of the Resulting Microbial Metabolome In Vitro.},
author = {Le Bourvellec C, Bagano Vilas Boas P, Lepercq P, Comtet-Marre S, Auffret P, Ruiz P, Bott R, Renard CMGC, Dufour C, Chatel JM, Mosoni P.},
journal = {Nutrients},
year = {2019},
doi = {10.3390/nu11030664},
pmid = {30893845}
}
@article{lin81347,
title = {Gut microbiota from high-risk men who have sex with men drive immune activation in gnotobiotic mice and in vitro HIV infection.},
author = {Li SX, Sen S, Schneider JM, Xiong KN, Nusbacher NM, Moreno-Huizar N, Shaffer M, Armstrong AJS, Severs E, Kuhn K, Neff CP, McCarter M, Campbell T, Lozupone CA, Palmer BE.},
journal = {PLoS Pathog},
year = {2019},
doi = {10.1371/journal.ppat.1007611},
pmid = {30947289}
}
@article{lin400271,
title = {A Method for Isolation and Proteomic Analysis of Outer Membrane Vesicles from Fecal Samples by LC-MS/MS.},
author = {Wu J, An M, Zhu J, Tan Z, Chen GY, Stidham RW, Lubman DM.},
journal = {J Proteomics Bioinform},
year = {2019},
doi = {10.4172/0974-276x.1000494},
pmid = {31057293}
}
@article{lin399868,
title = {Gut microbiota and dietary patterns in children with attention-deficit/hyperactivity disorder.},
author = {Wang LJ, Yang CY, Chou WJ, Lee MJ, Chou MC, Kuo HC, Yeh YM, Lee SY, Huang LH, Li SC.},
journal = {Eur Child Adolesc Psychiatry},
year = {2020},
doi = {10.1007/s00787-019-01352-2},
pmid = {31119393}
}
@article{lin4560,
title = {The 'in vivo lifestyle' of bile acid 7alpha-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice.},
author = {Ridlon JM, Devendran S, Alves JM, Doden H, Wolf PG, Pereira GV, Ly L, Volland A, Takei H, Nittono H, Murai T, Kurosawa T, Chlipala GE, Green SJ, Hernandez AG, Fields CJ, Wright CL, Kakiyama G, Cann I, Kashyap P, McCracken V, Gaskins HR},
journal = {Gut Microbes},
year = {2019},
doi = {10.1080/19490976.2019.1618173},
pmid = {31177942}
}
@article{lin400334,
title = {Antimicrobial Resistance Profile and Nim Gene Detection among Bacteroides fragilis Group Isolates in a University Hospital in South India.},
author = {Vishwanath S, Shenoy PA, Chawla K.},
journal = {J Glob Infect Dis},
year = {2019},
doi = {10.4103/jgid.jgid_116_18},
pmid = {31198308}
}
@article{lin399800,
title = {Identification of bacterial species in probiotic consortiums in selected commercial cleaning preparations.},
author = {Jezewska-Frackowiak J, Zebrowska J, Czajkowska E, Jasinska J, Peksa M, Jedrzejczak G, Skowron PM.},
journal = {Acta Biochim Pol},
year = {2019},
doi = {10.18388/abp.2018_2782},
pmid = {31207608}
}
@article{lin81352,
title = {Structures of single-layer beta-sheet proteins evolved from beta-hairpin repeats.},
author = {Xu Q, Biancalana M, Grant JC, Chiu HJ, Jaroszewski L, Knuth MW, Lesley SA, Godzik A, Elsliger MA, Deacon AM, Wilson IA.},
journal = {Protein Sci},
year = {2019},
doi = {10.1002/pro.3683},
pmid = {31306512}
}
@article{lin400312,
title = {Probable Clostridium septicum pneumocephalus in a user of natural remedies with newly diagnosed diabetes mellitus type 1.},
author = {Mirzai S, Rifai AO, Webb S, Rifai K, Reiner A.},
journal = {IDCases},
year = {2019},
doi = {10.1016/j.idcr.2019.e00581},
pmid = {31312601}
}
@article{lin399812,
title = {Glycerol-Monolaurate-Mediated Attenuation of Metabolic Syndrome is Associated with the Modulation of Gut Microbiota in High-Fat-Diet-Fed Mice.},
author = {Zhao M, Cai H, Jiang Z, Li Y, Zhong H, Zhang H, Feng F.},
journal = {Mol Nutr Food Res},
year = {2019},
doi = {10.1002/mnfr.201801417},
pmid = {31318165}
}
@article{lin400219,
title = {Gut Microbiota Analysis in Postoperative Lynch Syndrome Patients.},
author = {Mori G, Orena BS, Cultrera I, Barbieri G, Albertini AM, Ranzani GN, Carnevali I, Tibiletti MG, Pasca MR.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.01746},
pmid = {31417532}
}
@article{lin81396,
title = {Prospecting for microbial alpha-N-acetylgalactosaminidases yields a new class of GH31 O-glycanase.},
author = {Rahfeld P, Wardman JF, Mehr K, Huff D, Morgan-Lang C, Chen HM, Hallam SJ, Withers SG.},
journal = {J Biol Chem},
year = {2019},
doi = {10.1074/jbc.ra119.010628},
pmid = {31530641}
}
@article{lin399786,
title = {Chemical Cross-Linking Controls in Vitro Fecal Fermentation Rate of High-Amylose Maize Starches and Regulates Gut Microbiota Composition.},
author = {Wang S, Zhang B, Chen T, Li C, Fu X, Huang Q.},
journal = {J Agric Food Chem},
year = {2019},
doi = {10.1021/acs.jafc.9b04410},
pmid = {31617357}
}
@article{lin81333,
title = {Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs.},
author = {Ng KM, Aranda-Diaz A, Tropini C, Frankel MR, Van Treuren W, O'Loughlin CT, Merrill BD, Yu FB, Pruss KM, Oliveira RA, Higginbottom SK, Neff NF, Fischbach MA, Xavier KB, Sonnenburg JL, Huang KC.},
journal = {Cell Host Microbe},
year = {2019},
doi = {10.1016/j.chom.2019.10.011},
pmid = {31726029}
}
@article{lin399708,
title = {Coordinated changes of gut microbiome and lipidome differentiates nonalcoholic steatohepatitis (NASH) from isolated steatosis.},
author = {Qian M, Hu H, Yao Y, Zhao D, Wang S, Pan C, Duan X, Gao Y, Liu J, Zhang Y, Yang S, Qi LW, Wang L.},
journal = {Liver Int},
year = {2020},
doi = {10.1111/liv.14316},
pmid = {31782595}
}
@article{lin400345,
title = {Sharing of gut microbial strains between selected individual sets of twins cohabitating for decades.},
author = {Koo H, Hakim JA, Crossman DK, Lefkowitz EJ, Morrow CD.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0226111},
pmid = {31805145}
}
@article{lin400130,
title = {Chronic oral exposure to glycated whey proteins increases survival of aged male NOD mice with autoimmune prostatitis by regulating the gut microbiome and anti-inflammatory responses.},
author = {Chen Y, Guo KM, Nagy T, Guo TL.},
journal = {Food Funct},
year = {2020},
doi = {10.1039/c9fo01740b},
pmid = {31829366}
}
@article{lin400003,
title = {Intestinal Bacteroides sp. Imbalance Associated With the Occurrence of Childhood Undernutrition in China.},
author = {Li D, Li Y, Dai W, Wang H, Qiu C, Feng S, Zhou Q, Wang W, Feng X, Yao K, Liu Y, Yang Y, Yang Z, Xu X, Li S, Wei J, Zhou K.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.02635},
pmid = {31849851}
}
@article{lin81332,
title = {Scalable and cost-effective ribonuclease-based rRNA depletion for transcriptomics.},
author = {Huang Y, Sheth RU, Kaufman A, Wang HH.},
journal = {Nucleic Acids Res},
year = {2020},
doi = {10.1093/nar/gkz1169},
pmid = {31879761}
}
@article{lin400370,
title = {Helicobacter pylori antibiotic eradication coupled with a chemically defined diet in INS-GAS mice triggers dysbiosis and vitamin K deficiency resulting in gastric hemorrhage.},
author = {Quinn L, Sheh A, Ellis JL, Smith DE, Booth SL, Fu X, Muthupalani S, Ge Z, Puglisi DA, Wang TC, Gonda TA, Holcombe H, Fox JG.},
journal = {Gut Microbes},
year = {2020},
doi = {10.1080/19490976.2019.1710092},
pmid = {31955643}
}
@article{lin81407,
title = {A Metabolic Pathway for Activation of Dietary Glucosinolates by a Human Gut Symbiont.},
author = {Liou CS, Sirk SJ, Diaz CAC, Klein AP, Fischer CR, Higginbottom SK, Erez A, Donia MS, Sonnenburg JL, Sattely ES.},
journal = {Cell},
year = {2020},
doi = {10.1016/j.cell.2020.01.023},
pmid = {32084341}
}
@article{lin399914,
title = {Iatrogenic rectal injury associated with fleet enema administration masquerading as Fournier's Gangrene.},
author = {Liang Y, Di Re A, Ctercteko G.},
journal = {J Surg Case Rep},
year = {2020},
doi = {10.1093/jscr/rjz414},
pmid = {32123559}
}
@article{lin400028,
title = {The influence of blood on the human gut microbiome.},
author = {Chenard T, Malick M, Dube J, Masse E.},
journal = {BMC Microbiol},
year = {2020},
doi = {10.1186/s12866-020-01724-8},
pmid = {32126968}
}
@article{lin400392,
title = {Timing of complementary feeding is associated with gut microbiota diversity and composition and short chain fatty acid concentrations over the first year of life.},
author = {Differding MK, Benjamin-Neelon SE, Hoyo C, Ostbye T, Mueller NT.},
journal = {BMC Microbiol},
year = {2020},
doi = {10.1186/s12866-020-01723-9},
pmid = {32160858}
}
@article{lin81356,
title = {Gut Microbiota Contributes to Spontaneous Colitis in E3 Ligase Itch-Deficient Mice.},
author = {Kathania M, Tsakem EL, Theiss AL, Venuprasad K.},
journal = {J Immunol},
year = {2020},
doi = {10.4049/jimmunol.1701478},
pmid = {32169841}
}
@article{lin400272,
title = {Soy Metabolism by Gut Microbiota from Patients with Precancerous Intestinal Lesions.},
author = {Polimeno L, Barone M, Mosca A, Viggiani MT, Joukar F, Mansour-Ghanaei F, Mavaddati S, Daniele A, Debellis L, Bilancia M, Santacroce L, Di Leo A.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8040469},
pmid = {32218321}
}
@article{lin81323,
title = {Synergy between Cell Surface Glycosidases and Glycan-Binding Proteins Dictates the Utilization of Specific Beta(1,3)-Glucans by Human Gut Bacteroides.},
author = {Dejean G, Tamura K, Cabrera A, Jain N, Pudlo NA, Pereira G, Viborg AH, Van Petegem F, Martens EC, Brumer H.},
journal = {mBio},
year = {2020},
doi = {10.1128/mbio.00095-20},
pmid = {32265336}
}
@article{lin400044,
title = {The Role of Gut Microbiome in Psoriasis: Oral Administration of Staphylococcus aureus and Streptococcus danieliae Exacerbates Skin Inflammation of Imiquimod-Induced Psoriasis-Like Dermatitis.},
author = {Okada K, Matsushima Y, Mizutani K, Yamanaka K.},
journal = {Int J Mol Sci},
year = {2020},
doi = {10.3390/ijms21093303},
pmid = {32392785}
}
@article{lin400287,
title = {Key Bacteria in the Gut Microbiota Network for the Transition between Sedentary and Active Lifestyle.},
author = {Castellanos N, Diez GG, Antunez-Almagro C, Bressa C, Bailen M, Gonzalez-Soltero R, Perez M, Larrosa M.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8050785},
pmid = {32456263}
}
@article{lin400042,
title = {Matching between Donors and Ulcerative Colitis Patients Is Important for Long-Term Maintenance after Fecal Microbiota Transplantation.},
author = {Okahara K, Ishikawa D, Nomura K, Ito S, Haga K, Takahashi M, Shibuya T, Osada T, Nagahara A.},
journal = {J Clin Med},
year = {2020},
doi = {10.3390/jcm9061650},
pmid = {32486476}
}
@article{lin400408,
title = {Lactulose Suppresses Osteoclastogenesis and Ameliorates Estrogen Deficiency-Induced Bone Loss in Mice.},
author = {Chen X, Zhang Z, Hu Y, Cui J, Zhi X, Li X, Jiang H, Wang Y, Gu Z, Qiu Z, Dong X, Li Y, Su J.},
journal = {Aging Dis},
year = {2020},
doi = {10.14336/ad.2019.0613},
pmid = {32489707}
}
@article{lin81329,
title = {Oral Supplements of Combined Bacillus licheniformis Zhengchangsheng® and Xylooligosaccharides Improve High-Fat Diet-Induced Obesity and Modulate the Gut Microbiota in Rats.},
author = {Li Y, Liu M, Liu H, Wei X, Su X, Li M, Yuan J.},
journal = {Biomed Res Int},
year = {2020},
doi = {10.1155/2020/9067821},
pmid = {32509874}
}
@article{lin400114,
title = {Changes in the Intestinal Microbiota of Patients with Inflammatory Bowel Disease with Clinical Remission during an 8-Week Infliximab Infusion Cycle.},
author = {Seong G, Kim N, Joung JG, Kim ER, Chang DK, Chun J, Hong SN, Kim YH.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8060874},
pmid = {32527024}
}
@article{lin400007,
title = {Age-related changes in the gut microbiota and the core gut microbiome of healthy Thai humans.},
author = {La-Ongkham O, Nakphaichit M, Nakayama J, Keawsompong S, Nitisinprasert S.},
journal = {3 Biotech},
year = {2020},
doi = {10.1007/s13205-020-02265-7},
pmid = {32537376}
}
@article{lin399762,
title = {The proteome landscape of the kingdoms of life.},
author = {Muller JB, Geyer PE, Colaco AR, Treit PV, Strauss MT, Oroshi M, Doll S, Virreira Winter S, Bader JM, Kohler N, Theis F, Santos A, Mann M.},
journal = {Nature},
year = {2020},
doi = {10.1038/s41586-020-2402-x},
pmid = {32555458}
}
@article{lin400023,
title = {Development of a Novel Metagenomic Biomarker for Prediction of Upper Gastrointestinal Tract Involvement in Patients With Crohn's Disease.},
author = {Kwak MS, Cha JM, Shin HP, Jeon JW, Yoon JY.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01162},
pmid = {32582102}
}
@article{lin399988,
title = {Amoxicillin Increased Functional Pathway Genes and Beta-Lactam Resistance Genes by Pathogens Bloomed in Intestinal Microbiota Using a Simulator of the Human Intestinal Microbial Ecosystem.},
author = {Liu L, Wang Q, Lin H, Das R, Wang S, Qi H, Yang J, Xue Y, Mao D, Luo Y.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01213},
pmid = {32582117}
}
@article{lin399913,
title = {Associations between Dietary Fiber, the Fecal Microbiota and Estrogen Metabolism in Postmenopausal Women with Breast Cancer.},
author = {Zengul AG, Demark-Wahnefried W, Barnes S, Morrow CD, Bertrand B, Berryhill TF, Fruge AD.},
journal = {Nutr Cancer},
year = {2021},
doi = {10.1080/01635581.2020.1784444},
pmid = {32590914}
}
@article{lin81297,
title = {Developing standards for the microbiome field.},
author = {Amos GCA, Logan A, Anwar S, Fritzsche M, Mate R, Bleazard T, Rijpkema S.},
journal = {Microbiome},
year = {2020},
doi = {10.1186/s40168-020-00856-3},
pmid = {32591016}
}
@article{lin400105,
title = {In Vitro Activity of Tedizolid Compared to Linezolid and Five Other Antimicrobial Agents against 332 Anaerobic Isolates, Including Bacteroides fragilis Group, Prevotella, Porphyromonas, and Veillonella Species.},
author = {Goldstein EJC, Merriam CV, Citron DM.},
journal = {Antimicrob Agents Chemother},
year = {2020},
doi = {10.1128/aac.01088-20},
pmid = {32631819}
}
@article{lin399753,
title = {Activation of a Specific Gut Bacteroides-Folate-Liver Axis Benefits for the Alleviation of Nonalcoholic Hepatic Steatosis.},
author = {Qiao S, Bao L, Wang K, Sun S, Liao M, Liu C, Zhou N, Ma K, Zhang Y, Chen Y, Liu SJ, Liu H.},
journal = {Cell Rep},
year = {2020},
doi = {10.1016/j.celrep.2020.108005},
pmid = {32783933}
}
@article{lin400223,
title = {The gut microbiome in dogs with congestive heart failure: a pilot study.},
author = {Seo J, Matthewman L, Xia D, Wilshaw J, Chang YM, Connolly DJ.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-70826-0},
pmid = {32792610}
}
@article{lin399729,
title = {In vitro fermentation outcomes of arabinoxylan and galactoxyloglucan depend on fecal inoculum more than substrate chemistry.},
author = {Feng G, Mikkelsen D, Hoedt EC, Williams BA, Flanagan BM, Morrison M, Gidley MJ.},
journal = {Food Funct},
year = {2020},
doi = {10.1039/d0fo01103g},
pmid = {32813756}
}
@article{lin81295,
title = {Paneth Cell-Derived Lysozyme Defines the Composition of Mucolytic Microbiota and the Inflammatory Tone of the Intestine.},
author = {Yu S, Balasubramanian I, Laubitz D, Tong K, Bandyopadhyay S, Lin X, Flores J, Singh R, Liu Y, Macazana C, Zhao Y, Beguet-Crespel F, Patil K, Midura-Kiela MT, Wang D, Yap GS, Ferraris RP, Wei Z, Bonder EM, Haggblom MM, Zhang L, Douard V, Verzi MP, Cadwell K, Kiela PR, Gao N.},
journal = {Immunity},
year = {2020},
doi = {10.1016/j.immuni.2020.07.010},
pmid = {32814028}
}
@article{lin400397,
title = {Salmonella enterica Serovar Typhimurium Temporally Modulates the Enteric Microbiota and Host Responses To Overcome Colonization Resistance in Swine.},
author = {Bescucci DM, Moote PE, Ortega Polo R, Uwiera RRE, Inglis GD.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.01569-20},
pmid = {32859592}
}
@article{lin399730,
title = {Diversity analysis of gut microbiota between healthy controls and those with atopic dermatitis in a Chinese population.},
author = {Ye S, Yan F, Wang H, Mo X, Liu J, Zhang Y, Li H, Chen D.},
journal = {J Dermatol},
year = {2021},
doi = {10.1111/1346-8138.15530},
pmid = {32860635}
}
@article{lin400030,
title = {Infusion of donor feces affects the gut-brain axis in humans with metabolic syndrome.},
author = {Hartstra AV, Schuppel V, Imangaliyev S, Schrantee A, Prodan A, Collard D, Levin E, Dallinga-Thie G, Ackermans MT, Winkelmeijer M, Havik SR, Metwaly A, Lagkouvardos I, Nier A, Bergheim I, Heikenwalder M, Dunkel A, Nederveen AJ, Liebisch G, Mancano G, Claus SP, Benitez-Paez A, la Fleur SE, Bergman JJ, Gerdes V, Sanz Y, Booij J, Kemper E, Groen AK, Serlie MJ, Haller D, Nieuwdorp M.},
journal = {Mol Metab},
year = {2020},
doi = {10.1016/j.molmet.2020.101076},
pmid = {32916306}
}
@article{lin400258,
title = {Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease.},
author = {Leonard MM, Karathia H, Pujolassos M, Troisi J, Valitutti F, Subramanian P, Camhi S, Kenyon V, Colucci A, Serena G, Cucchiara S, Montuori M, Malamisura B, Francavilla R, Elli L, Fanelli B, Colwell R, Hasan N, Zomorrodi AR, Fasano A, CD-GEMM Team.},
journal = {Microbiome},
year = {2020},
doi = {10.1186/s40168-020-00906-w},
pmid = {32917289}
}
@article{lin400043,
title = {Fecal Microbiota Alterations and Small Intestinal Bacterial Overgrowth in Functional Abdominal Bloating/Distention.},
author = {Noh CK, Lee KJ.},
journal = {J Neurogastroenterol Motil},
year = {2020},
doi = {10.5056/jnm20080},
pmid = {32989189}
}
@article{lin81267,
title = {Linear and branched beta-Glucans degrading enzymes from versatile Bacteroides uniformis JCM 13288T and their roles in cooperation with gut bacteria.},
author = {Singh RP, Rajarammohan S, Thakur R, Hassan M.},
journal = {Gut Microbes},
year = {2020},
doi = {10.1080/19490976.2020.1826761},
pmid = {33043794}
}
@article{lin400281,
title = {Gut Microbiome Changes Associated With HIV Infection and Sexual Orientation.},
author = {Zhou J, Zhang Y, Cui P, Luo L, Chen H, Liang B, Jiang J, Ning C, Tian L, Zhong X, Ye L, Liang H, Huang J.},
journal = {Front Cell Infect Microbiol},
year = {2020},
doi = {10.3389/fcimb.2020.00434},
pmid = {33102244}
}
@article{lin400162,
title = {Ecological Structuring of Temperate Bacteriophages in the Inflammatory Bowel Disease-Affected Gut.},
author = {Nishiyama H, Endo H, Blanc-Mathieu R, Ogata H.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8111663},
pmid = {33121006}
}
@article{lin399697,
title = {Chemical and microbial characterization for fermentation of water-soluble cellulose acetate in human stool cultures.},
author = {Yamada H, Watabe Y, Suzuki Y, Koike S, Shimamoto S, Kobayashi Y.},
journal = {J Sci Food Agric},
year = {2021},
doi = {10.1002/jsfa.10927},
pmid = {33159326}
}
@article{lin400240,
title = {The Impact of Air Pollution on Intestinal Microbiome of Asthmatic Children: A Panel Study.},
author = {Zheng P, Zhang B, Zhang K, Lv X, Wang Q, Bai X.},
journal = {Biomed Res Int},
year = {2020},
doi = {10.1155/2020/5753427},
pmid = {33204702}
}
@article{lin81383,
title = {Commensal Microbiota Modulation of Natural Resistance to Virus Infection.},
author = {Stefan KL, Kim MV, Iwasaki A, Kasper DL.},
journal = {Cell},
year = {2020},
doi = {10.1016/j.cell.2020.10.047},
pmid = {33212011}
}
@article{lin400060,
title = {Proof of Concept of Culturomics Use of Time of Care.},
author = {Naud S, Khelaifia S, Mbogning Fonkou MD, Dione N, Lagier JC, Raoult D.},
journal = {Front Cell Infect Microbiol},
year = {2020},
doi = {10.3389/fcimb.2020.524769},
pmid = {33330116}
}
@article{lin399704,
title = {Alterations of intestinal microbiota in liver cirrhosis with muscle wasting.},
author = {Ren X, Hao S, Yang C, Yuan L, Zhou X, Zhao H, Yao J.},
journal = {Nutrition},
year = {2021},
doi = {10.1016/j.nut.2020.111081},
pmid = {33348106}
}
@article{lin400005,
title = {Microbial Species that Initially Colonize the Human Gut at Birth or in Early Childhood Can Stay in Human Body for Lifetime.},
author = {Li W, Nelson KE.},
journal = {Microb Ecol},
year = {2021},
doi = {10.1007/s00248-020-01636-0},
pmid = {33410935}
}
@article{lin81335,
title = {Berberine alters gut microbial function through modulation of bile acids.},
author = {Wolf PG, Devendran S, Doden HL, Ly LK, Moore T, Takei H, Nittono H, Murai T, Kurosawa T, Chlipala GE, Green SJ, Kakiyama G, Kashyap P, McCracken VJ, Gaskins HR, Gillevet PM, Ridlon JM.},
journal = {BMC Microbiol},
year = {2021},
doi = {10.1186/s12866-020-02020-1},
pmid = {33430766}
}
@article{lin400375,
title = {Effects of anthropogenic habitat disturbance and Giardia duodenalis infection on a sentinel species' gut bacteria.},
author = {Kuthyar S, Kowalewski MM, Roellig DM, Mallott EK, Zeng Y, Gillespie TR, Amato KR.},
journal = {Ecol Evol},
year = {2021},
doi = {10.1002/ece3.6910},
pmid = {33437414}
}
@article{lin81301,
title = {Methotrexate impacts conserved pathways in diverse human gut bacteria leading to decreased host immune activation.},
author = {Nayak RR, Alexander M, Deshpande I, Stapleton-Gray K, Rimal B, Patterson AD, Ubeda C, Scher JU, Turnbaugh PJ.},
journal = {Cell Host Microbe},
year = {2021},
doi = {10.1016/j.chom.2020.12.008},
pmid = {33440172}
}
@article{lin400197,
title = {Immunological design of commensal communities to treat intestinal infection and inflammation.},
author = {Brown RL, Larkinson MLY, Clarke TB.},
journal = {PLoS Pathog},
year = {2021},
doi = {10.1371/journal.ppat.1009191},
pmid = {33465156}
}
@article{lin399956,
title = {Bacteroides uniformis combined with fiber amplifies metabolic and immune benefits in obese mice.},
author = {Lopez-Almela I, Romani-Perez M, Bullich-Vilarrubias C, Benitez-Paez A, Gomez Del Pulgar EM, Frances R, Liebisch G, Sanz Y.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2020.1865706},
pmid = {33499721}
}
@article{lin399685,
title = {[Correlation between gut microbiota and liver biochemical indicators in patients with chronic hepatitis B].},
author = {Zhao Z, Qin S, Wang L, Li L, Liu Y, Deng L, Zou Z.},
journal = {Sheng Wu Gong Cheng Xue Bao},
year = {2021},
doi = {10.13345/j.cjb.200279},
pmid = {33501810}
}
@article{lin399663,
title = {Lychee (Litchi chinensis Sonn.) Pulp Phenolics Activate the Short-Chain Fatty Acid-Free Fatty Acid Receptor Anti-inflammatory Pathway by Regulating Microbiota and Mitigate Intestinal Barrier Damage in Dextran Sulfate Sodium-Induced Colitis in Mice.},
author = {Huang G, Wang Z, Wu G, Zhang R, Dong L, Huang F, Zhang M, Su D.},
journal = {J Agric Food Chem},
year = {2021},
doi = {10.1021/acs.jafc.0c07407},
pmid = {33533603}
}
@article{lin399959,
title = {Boolean implication analysis unveils candidate universal relationships in microbiome data.},
author = {Vo D, Singh SC, Safa S, Sahoo D.},
journal = {BMC Bioinformatics},
year = {2021},
doi = {10.1186/s12859-020-03941-4},
pmid = {33546590}
}
@article{lin400342,
title = {Stratification of Volunteers According to Flavanone Metabolite Excretion and Phase II Metabolism Profile after Single Doses of 'Pera' Orange and 'Moro' Blood Orange Juices.},
author = {Nishioka A, Tobaruela EC, Fraga LN, Tomas-Barberan FA, Lajolo FM, Hassimotto NMA.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13020473},
pmid = {33573276}
}
@article{lin400391,
title = {Restructuring the Gut Microbiota by Intermittent Fasting Lowers Blood Pressure.},
author = {Shi H, Zhang B, Abo-Hamzy T, Nelson JW, Ambati CSR, Petrosino JF, Bryan RM, Durgan DJ.},
journal = {Circ Res},
year = {2021},
doi = {10.1161/circresaha.120.318155},
pmid = {33596669}
}
@article{lin400344,
title = {Preliminary evidence for an influence of exposure to polycyclic aromatic hydrocarbons on the composition of the gut microbiota and neurodevelopment in three-year-old healthy children.},
author = {Zhang W, Sun Z, Zhang Q, Sun Z, Su Y, Song J, Wang B, Gao R.},
journal = {BMC Pediatr},
year = {2021},
doi = {10.1186/s12887-021-02539-w},
pmid = {33596845}
}
@article{lin399737,
title = {Characterization of microbiota in acute leukemia patients following successful remission induction chemotherapy without antimicrobial prophylaxis.},
author = {Shen Z, Gu X, Cao H, Mao W, Yang L, He M, Zhang R, Zhou Y, Liu K, Wang L, Liu L, Yu J, Yin L.},
journal = {Int Microbiol},
year = {2021},
doi = {10.1007/s10123-021-00163-3},
pmid = {33604753}
}
@article{lin400233,
title = {Ectopic gut colonization: a metagenomic study of the oral and gut microbiome in Crohn's disease.},
author = {Hu S, Png E, Gowans M, Ong DEH, de Sessions PF, Song J, Nagarajan N.},
journal = {Gut Pathog},
year = {2021},
doi = {10.1186/s13099-021-00409-5},
pmid = {33632307}
}
@article{lin400329,
title = {Gut Microbiome-Based Analysis of Lipid A Biosynthesis in Individuals with Autism Spectrum Disorder: An In Silico Evaluation.},
author = {Maigoro AY, Lee S.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13020688},
pmid = {33669978}
}
@article{lin400292,
title = {Lactobacillus rhamnosus GG induces cGAS/STING- dependent type I interferon and improves response to immune checkpoint blockade.},
author = {Si W, Liang H, Bugno J, Xu Q, Ding X, Yang K, Fu Y, Weichselbaum RR, Zhao X, Wang L.},
journal = {Gut},
year = {2022},
doi = {10.1136/gutjnl-2020-323426},
pmid = {33685966}
}
@article{lin81281,
title = {New Insights Into the Cancer-Microbiome-Immune Axis: Decrypting a Decade of Discoveries.},
author = {Jain T, Sharma P, Are AC, Vickers SM, Dudeja V.},
journal = {Front Immunol},
year = {2021},
doi = {10.3389/fimmu.2021.622064},
pmid = {33708214}
}
@article{lin399996,
title = {Gut Microbiota Signatures in Gestational Anemia.},
author = {Long Y, Liang F, Guo R, Zhu C, Zhao X, Wang X, Liu F, Jiang M, Liang Q, Zeng S, Han M, Qin J, Li S, Li S, Yang H.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.549678},
pmid = {33718259}
}
@article{lin400259,
title = {Gut microbiota markers associated with obesity and overweight in Italian adults.},
author = {Palmas V, Pisanu S, Madau V, Casula E, Deledda A, Cusano R, Uva P, Vascellari S, Loviselli A, Manzin A, Velluzzi F.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-84928-w},
pmid = {33750881}
}
@article{lin81276,
title = {A review on the role of gut microbiota in immune checkpoint blockade therapy for cancer.},
author = {Kim E, Ahn H, Park H.},
journal = {Mamm Genome},
year = {2021},
doi = {10.1007/s00335-021-09867-3},
pmid = {33783613}
}
@article{lin399951,
title = {Probing the "Dark Matter" of the Human Gut Phageome: Culture Assisted Metagenomics Enables Rapid Discovery and Host-Linking for Novel Bacteriophages.},
author = {Fitzgerald CB, Shkoporov AN, Upadrasta A, Khokhlova EV, Ross RP, Hill C.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.616918},
pmid = {33791236}
}
@article{lin399985,
title = {From Upper Respiratory Symptoms to Hemophagocytic Lymphohistiocytosis: Case Report of a Human Adenovirus Infection in Haploidentical Hematopoietic Stem Cell Transplant Recipient.},
author = {Demey B, Brault C, Maizel J, Francois C.},
journal = {Pathogens},
year = {2021},
doi = {10.3390/pathogens10030340},
pmid = {33804012}
}
@article{lin400324,
title = {Antioxidant Vitamins and Prebiotic FOS and XOS Differentially Shift Microbiota Composition and Function and Improve Intestinal Epithelial Barrier In Vitro.},
author = {Pham VT, Calatayud M, Rotsaert C, Seifert N, Richard N, Van den Abbeele P, Marzorati M, Steinert RE.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13041125},
pmid = {33805552}
}
@article{lin400382,
title = {Immune System, Microbiota, and Microbial Metabolites: The Unresolved Triad in Colorectal Cancer Microenvironment.},
author = {Hanus M, Parada-Venegas D, Landskron G, Wielandt AM, Hurtado C, Alvarez K, Hermoso MA, Lopez-Kostner F, De la Fuente M.},
journal = {Front Immunol},
year = {2021},
doi = {10.3389/fimmu.2021.612826},
pmid = {33841394}
}
@article{lin81369,
title = {Microbiota regulate innate immune signaling and protective immunity against cancer.},
author = {Xing C, Wang M, Ajibade AA, Tan P, Fu C, Chen L, Zhu M, Hao ZZ, Chu J, Yu X, Yin B, Zhu J, Shen WJ, Duan T, Wang HY, Wang RF.},
journal = {Cell Host Microbe},
year = {2021},
doi = {10.1016/j.chom.2021.03.016},
pmid = {33894128}
}
@article{lin399871,
title = {Novel Siphoviridae Bacteriophages Infecting Bacteroides uniformis Contain Diversity Generating Retroelement.},
author = {Hedzet S, Rupnik M, Accetto T.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9050892},
pmid = {33919474}
}
@article{lin399760,
title = {Bacteroidetes Species Are Correlated with Disease Activity in Ulcerative Colitis.},
author = {Nomura K, Ishikawa D, Okahara K, Ito S, Haga K, Takahashi M, Arakawa A, Shibuya T, Osada T, Kuwahara-Arai K, Kirikae T, Nagahara A.},
journal = {J Clin Med},
year = {2021},
doi = {10.3390/jcm10081749},
pmid = {33920646}
}
@article{lin400318,
title = {Detection of Dysbiosis and Increased Intestinal Permeability in Brazilian Patients with Relapsing-Remitting Multiple Sclerosis.},
author = {Pellizoni FP, Leite AZ, Rodrigues NC, Ubaiz MJ, Gonzaga MI, Takaoka NNC, Mariano VS, Omori WP, Pinheiro DG, Matheucci Junior E, Gomes E, de Oliveira GLV.},
journal = {Int J Environ Res Public Health},
year = {2021},
doi = {10.3390/ijerph18094621},
pmid = {33925359}
}
@article{lin81290,
title = {GABA Production by Human Intestinal Bacteroides spp.: Prevalence, Regulation, and Role in Acid Stress Tolerance.},
author = {Otaru N, Ye K, Mujezinovic D, Berchtold L, Constancias F, Cornejo FA, Krzystek A, de Wouters T, Braegger C, Lacroix C, Pugin B.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.656895},
pmid = {33936013}
}
@article{lin399678,
title = {Baicalin-Aluminum Modulates the Broiler Gut Microbiome.},
author = {Guo L, He J, Zhang J, Zhang X, Zhang D, Zhou L, Yuan Y, Fu S, Qiu Y, Ye C, Liu Y, Wu Z, Hu CA.},
journal = {DNA Cell Biol},
year = {2021},
doi = {10.1089/dna.2021.0080},
pmid = {33945308}
}
@article{lin400108,
title = {Diet, obesity, and the gut microbiome as determinants modulating metabolic outcomes in a non-human primate model.},
author = {Newman TM, Shively CA, Register TC, Appt SE, Yadav H, Colwell RR, Fanelli B, Dadlani M, Graubics K, Nguyen UT, Ramamoorthy S, Uberseder B, Clear KYJ, Wilson AS, Reeves KD, Chappell MC, Tooze JA, Cook KL.},
journal = {Microbiome},
year = {2021},
doi = {10.1186/s40168-021-01069-y},
pmid = {33952353}
}
@article{lin400319,
title = {Nutritional Effects of the Enteral Nutritional Formula on Regulation of Gut Microbiota and Metabolic Level in Type 2 Diabetes Mellitus Mice.},
author = {Wei T, Jia Y, Xue W, Ma M, Wu W.},
journal = {Diabetes Metab Syndr Obes},
year = {2021},
doi = {10.2147/dmso.s301454},
pmid = {33953585}
}
@article{lin400058,
title = {Effect of Bovine Milk Fat Globule Membrane and Lactoferrin in Infant Formula on Gut Microbiome and Metabolome at 4 Months of Age.},
author = {Chichlowski M, Bokulich N, Harris CL, Wampler JL, Li F, Berseth CL, Rudolph C, Wu SS.},
journal = {Curr Dev Nutr},
year = {2021},
doi = {10.1093/cdn/nzab027},
pmid = {33981943}
}
@article{lin400349,
title = {Short- and Branched-Chain Fatty Acids as Fecal Markers for Microbiota Activity in Vegans and Omnivores.},
author = {Trefflich I, Dietrich S, Braune A, Abraham K, Weikert C.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13061808},
pmid = {34073495}
}
@article{lin400019,
title = {Plant-Based Diet Index and Metabolic Risk in Men: Exploring the Role of the Gut Microbiome.},
author = {Li Y, Wang DD, Satija A, Ivey KL, Li J, Wilkinson JE, Li R, Baden M, Chan AT, Huttenhower C, Rimm EB, Hu FB, Sun Q.},
journal = {J Nutr},
year = {2021},
doi = {10.1093/jn/nxab175},
pmid = {34114015}
}
@article{lin400257,
title = {Characterization of the gut microbiota in Chinese children with overweight and obesity using 16S rRNA gene sequencing.},
author = {Chen X, Zhang D, Sun H, Jiang F, Shen Y, Wei P, Shen X.},
journal = {PeerJ},
year = {2021},
doi = {10.7717/peerj.11439},
pmid = {34164233}
}
@article{lin81334,
title = {Constructing a gnotobiotic mouse model with a synthetic human gut microbiome to study host-microbe cross talk.},
author = {Steimle A, De Sciscio A, Neumann M, Grant ET, Pereira GV, Ohno H, Martens EC, Desai MS.},
journal = {STAR Protoc},
year = {2021},
doi = {10.1016/j.xpro.2021.100607},
pmid = {34179836}
}
@article{lin400224,
title = {Dietary Fiber Hierarchical Specificity: the Missing Link for Predictable and Strong Shifts in Gut Bacterial Communities.},
author = {Cantu-Jungles TM, Bulut N, Chambry E, Ruthes A, Iacomini M, Keshavarzian A, Johnson TA, Hamaker BR.},
journal = {mBio},
year = {2021},
doi = {10.1128/mbio.01028-21},
pmid = {34182773}
}
@article{lin400209,
title = {Field evaluation of the gut microbiome composition of pre-school and school-aged children in Tha Song Yang, Thailand, following oral MDA for STH infections.},
author = {Stracke K, Adisakwattana P, Phuanukoonnon S, Yoonuan T, Poodeepiyasawat A, Dekumyoy P, Chaisiri K, Roth Schulze A, Wilcox S, Karunajeewa H, Traub RJ, Jex AR.},
journal = {PLoS Negl Trop Dis},
year = {2021},
doi = {10.1371/journal.pntd.0009597},
pmid = {34310596}
}
@article{lin81384,
title = {Insights from Bacteroides Species in Children with Type 1 Diabetes.},
author = {Matos J, Matos I, Calha M, Santos P, Duarte I, Cardoso Y, Faleiro ML.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9071436},
pmid = {34361871}
}
@article{lin399928,
title = {Alteration of the Fecal but Not Salivary Microbiome in Patients with Behçet's Disease According to Disease Activity Shift.},
author = {Kim JC, Park MJ, Park S, Lee ES.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9071449},
pmid = {34361885}
}
@article{lin399823,
title = {Characteristics of gut microbiota in people with obesity.},
author = {Duan M, Wang Y, Zhang Q, Zou R, Guo M, Zheng H.},
journal = {PLoS One},
year = {2021},
doi = {10.1371/journal.pone.0255446},
pmid = {34375351}
}
@article{lin399778,
title = {Kazak faecal microbiota transplantation induces short-chain fatty acids that promote glucagon-like peptide-1 secretion by regulating gut microbiota in db/db mice.},
author = {Han X, Wang Y, Zhang P, Zhu M, Li L, Mao X, Sha X, Li L.},
journal = {Pharm Biol},
year = {2021},
doi = {10.1080/13880209.2021.1954667},
pmid = {34392792}
}
@article{lin81374,
title = {A bacterial bile acid metabolite modulates Treg activity through the nuclear hormone receptor NR4A1.},
author = {Li W, Hang S, Fang Y, Bae S, Zhang Y, Zhang M, Wang G, McCurry MD, Bae M, Paik D, Franzosa EA, Rastinejad F, Huttenhower C, Yao L, Devlin AS, Huh JR.},
journal = {Cell Host Microbe},
year = {2021},
doi = {10.1016/j.chom.2021.07.013},
pmid = {34416161}
}
@article{lin81370,
title = {Imaging the in vivo growth patterns of bacteria in human gut Microbiota.},
author = {Lin L, Song J, Li J, Zuo X, Wei H, Yang C, Wang W.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1960134},
pmid = {34428120}
}
@article{lin399884,
title = {Phylum barrier and Escherichia coli intra-species phylogeny drive the acquisition of antibiotic-resistance genes.},
author = {Petitjean M, Condamine B, Burdet C, Denamur E, Ruppe E, Ruppe E.},
journal = {Microb Genom},
year = {2021},
doi = {10.1099/mgen.0.000489},
pmid = {34435947}
}
@article{lin81277,
title = {Enzymatic Metabolism of Flavonoids by Gut Microbiota and Its Impact on Gastrointestinal Cancer.},
author = {Al-Ishaq RK, Liskova A, Kubatka P, Busselberg D.},
journal = {Cancers (Basel)},
year = {2021},
doi = {10.3390/cancers13163934},
pmid = {34439088}
}
@article{lin400167,
title = {Differential Effects of Western and Mediterranean-Type Diets on Gut Microbiota: A Metagenomics and Metabolomics Approach.},
author = {Barber C, Mego M, Sabater C, Vallejo F, Bendezu RA, Masihy M, Guarner F, Espin JC, Margolles A, Azpiroz F.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13082638},
pmid = {34444797}
}
@article{lin400220,
title = {Human Fecal Contamination Corresponds to Changes in the Freshwater Bacterial Communities of a Large River Basin.},
author = {McClary-Gutierrez JS, Driscoll Z, Nenn C, Newton RJ.},
journal = {Microbiol Spectr},
year = {2021},
doi = {10.1128/spectrum.01200-21},
pmid = {34494860}
}
@article{lin400123,
title = {Changes in Intestinal Flora Structure and Metabolites Are Associated With Myocardial Fibrosis in Patients With Persistent Atrial Fibrillation.},
author = {Liu L, Su J, Li R, Luo F.},
journal = {Front Nutr},
year = {2021},
doi = {10.3389/fnut.2021.702085},
pmid = {34497820}
}
@article{lin81337,
title = {Structural basis for tRNA methylthiolation by the radical SAM enzyme MiaB.},
author = {Esakova OA, Grove TL, Yennawar NH, Arcinas AJ, Wang B, Krebs C, Almo SC, Booker SJ.},
journal = {Nature},
year = {2021},
doi = {10.1038/s41586-021-03904-6},
pmid = {34526715}
}
@article{lin400182,
title = {Cutting Edge: Intestinal IL-17A Receptor Signaling Specifically Regulates High-Fat Diet-Mediated, Microbiota-Driven Metabolic Disorders.},
author = {Gaudino SJ, Huang H, Jean-Pierre M, Joshi P, Beaupre M, Kempen C, Wong HT, Kumar P.},
journal = {J Immunol},
year = {2021},
doi = {10.4049/jimmunol.2000986},
pmid = {34544802}
}
@article{lin400333,
title = {The gut microbial diversity of colon cancer patients and the clinical significance.},
author = {He T, Cheng X, Xing C.},
journal = {Bioengineered},
year = {2021},
doi = {10.1080/21655979.2021.1972077},
pmid = {34551683}
}
@article{lin400187,
title = {Probiotics maintain the gut microbiome homeostasis during Indian Antarctic expedition by ship.},
author = {Srivastava AK, Rohil V, Bhushan B, Eslavath MR, Gupta H, Chanda S, Kumar B, Varshney R, Ganju L.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-97890-4},
pmid = {34552104}
}
@article{lin400347,
title = {Microbial Composition and Co-occurrence Patterns in the Gut Microbial Community of Normal and Obese Mice in Response to Astaxanthin.},
author = {Gao Y, Liu F, Li RW, Li C, Xue C, Tang Q.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.671271},
pmid = {34552567}
}
@article{lin81280,
title = {Next-generation prebiotic promotes selective growth of bifidobacteria, suppressing Clostridioides difficile.},
author = {Hirano R, Sakanaka M, Yoshimi K, Sugimoto N, Eguchi S, Yamauchi Y, Nara M, Maeda S, Ami Y, Gotoh A, Katayama T, Iida N, Kato T, Ohno H, Fukiya S, Yokota A, Nishimoto M, Kitaoka M, Nakai H, Kurihara S.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1973835},
pmid = {34553672}
}
@article{lin400081,
title = {Potassium Alginate Oligosaccharides Alter Gut Microbiota, and Have Potential to Prevent the Development of Hypertension and Heart Failure in Spontaneously Hypertensive Rats.},
author = {Han ZL, Chen M, Fu XD, Yang M, Hrmova M, Zhao YH, Mou HJ.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22189823},
pmid = {34575987}
}
@article{lin399733,
title = {Amelioration of Hepatic Steatosis in Mice through Bacteroides uniformis CBA7346-Mediated Regulation of High-Fat Diet-Induced Insulin Resistance and Lipogenesis.},
author = {Lee HB, Do MH, Jhun H, Ha SK, Song HS, Roh SW, Chung WH, Nam YD, Park HY.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13092989},
pmid = {34578867}
}
@article{lin400343,
title = {Protein Intake, Metabolic Status and the Gut Microbiota in Different Ethnicities: Results from Two Independent Cohorts.},
author = {Bel Lassen P, Attaye I, Adriouch S, Nicolaou M, Aron-Wisnewsky J, Nielsen T, Chakaroun R, Le Chatelier E, Forslund S, Belda E, Bork P, Backhed F, Stumvoll M, Pedersen O, Herrema H, Groen AK, Pinto-Sietsma SJ, Zwinderman AH, Nieuwdorp M, Clement K, On Behalf Of Metacardis Consortium.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13093159},
pmid = {34579043}
}
@article{lin399679,
title = {Unhappy Triad: Infection with Leptospira spp. Escherichia coli and Bacteroides uniformis Associated with an Unusual Manifestation of Portal Vein Thrombosis.},
author = {Kalbitz S, Ermisch J, Schmidt JM, Wallstabe I, Lubbert C.},
journal = {Case Rep Gastroenterol},
year = {2021},
doi = {10.1159/000517094},
pmid = {34616262}
}
@article{lin400080,
title = {Chitosan Oligosaccharide Ameliorates Metabolic Syndrome Induced by Overnutrition via Altering Intestinal Microbiota.},
author = {Wang Y, Liu S, Tang D, Dong R, Feng Q.},
journal = {Front Nutr},
year = {2021},
doi = {10.3389/fnut.2021.743492},
pmid = {34660667}
}
@article{lin81354,
title = {Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family.},
author = {Kashima T, Okumura K, Ishiwata A, Kaieda M, Terada T, Arakawa T, Yamada C, Shimizu K, Tanaka K, Kitaoka M, Ito Y, Fujita K, Fushinobu S.},
journal = {J Biol Chem},
year = {2021},
doi = {10.1016/j.jbc.2021.101324},
pmid = {34688653}
}
@article{lin81325,
title = {Cell Surface Xyloglucan Recognition and Hydrolysis by the Human Gut Commensal Bacteroides uniformis.},
author = {Grondin JM, Dejean G, Van Petegem F, Brumer H.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.01566-21},
pmid = {34731054}
}
@article{lin400211,
title = {Diabetes and gut microbiota.},
author = {Xi Y, Xu PF.},
journal = {World J Diabetes},
year = {2021},
doi = {10.4239/wjd.v12.i10.1693},
pmid = {34754371}
}
@article{lin81376,
title = {Intestinal microbial communities and Holdemanella isolated from HIV+/- men who have sex with men increase frequencies of lamina propria CCR5+ CD4+ T cells.},
author = {Yamada E, Martin CG, Moreno-Huizar N, Fouquier J, Neff CP, Coleman SL, Schneider JM, Huber J, Nusbacher NM, McCarter M, Campbell TB, Lozupone CA, Palmer BE.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1997292},
pmid = {34818131}
}
@article{lin399653,
title = {A low molecular weight brown algae Laminaria japonica glycan modulation of gut microbiota and body weight in mice.},
author = {Jin Z, Fang Z, Pei Z, Wang H, Zhu J, Lee YK, Zhang H, Zhao J, Lu W, Chen W.},
journal = {Food Funct},
year = {2021},
doi = {10.1039/d1fo03024h},
pmid = {34821239}
}
@article{lin400276,
title = {Microbiome Analysis of Mucosal Ileoanal Pouch in Ulcerative Colitis Patients Revealed Impairment of the Pouches Immunometabolites.},
author = {Palmieri O, Castellana S, Biscaglia G, Panza A, Latiano A, Fontana R, Guerra M, Corritore G, Latiano T, Martino G, Mazza T, Andriulli A, Perri F, Bossa F.},
journal = {Cells},
year = {2021},
doi = {10.3390/cells10113243},
pmid = {34831464}
}
@article{lin399940,
title = {The Relationship Between Osteoporosis and Intestinal Microbes in the Henan Province of China.},
author = {Qin Q, Yan S, Yang Y, Chen J, Yan H, Li T, Gao X, Wang Y, Li A, Wang S, Ding S.},
journal = {Front Cell Dev Biol},
year = {2021},
doi = {10.3389/fcell.2021.752990},
pmid = {34869341}
}
@article{lin399939,
title = {Structural and Functional Alterations of Gut Microbiota in Males With Hyperuricemia and High Levels of Liver Enzymes.},
author = {Sheng S, Chen J, Zhang Y, Qin Q, Li W, Yan S, Wang Y, Li T, Gao X, Tang L, Li A, Ding S.},
journal = {Front Med (Lausanne)},
year = {2021},
doi = {10.3389/fmed.2021.779994},
pmid = {34869502}
}
@article{lin400069,
title = {Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM.},
author = {Chen Y, Lin H, Cole M, Morris A, Martinson J, Mckay H, Mimiaga M, Margolick J, Fitch A, Methe B, Srinivas VR, Peddada S, Rinaldo CR.},
journal = {Microbiome},
year = {2021},
doi = {10.1186/s40168-021-01168-w},
pmid = {34879869}
}
@article{lin400289,
title = {Alterations in Metabolome and Microbiome Associated with an Early Stress Stage in Male Wistar Rats: A Multi-Omics Approach.},
author = {Hernandez-Baixauli J, Puigbo P, Abasolo N, Palacios-Jordan H, Foguet-Romero E, Sunol D, Galofre M, Caimari A, Baselga-Escudero L, Bas JMD, Mulero M.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms222312931},
pmid = {34884735}
}
@article{lin400230,
title = {Nutraceuticals and Herbal Food Supplements for Weight Loss: Is There a Prebiotic Role in the Mechanism of Action?},
author = {Bertuccioli A, Cardinali M, Biagi M, Moricoli S, Morganti I, Zonzini GB, Rigillo G.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9122427},
pmid = {34946029}
}
@article{lin399945,
title = {Quantitative Analysis and Visualization of the Interaction Between Intestinal Microbiota and Type 1 Diabetes in Children Based on Multi-Databases.},
author = {Zhao M, Xu S, Cavagnaro MJ, Zhang W, Shi J.},
journal = {Front Pediatr},
year = {2021},
doi = {10.3389/fped.2021.752250},
pmid = {34976889}
}
@article{lin399648,
title = {CRISPR/Cas-Based Genome Editing for Human Gut Commensal Bacteroides Species.},
author = {Zheng L, Tan Y, Hu Y, Shen J, Qu Z, Chen X, Ho CL, Leung EL, Zhao W, Dai L.},
journal = {ACS Synth Biol},
year = {2022},
doi = {10.1021/acssynbio.1c00543},
pmid = {34990118}
}
@article{lin81292,
title = {Polysaccharide utilization loci in Bacteroides determine population fitness and community-level interactions.},
author = {Feng J, Qian Y, Zhou Z, Ertmer S, Vivas EI, Lan F, Hamilton JJ, Rey FE, Anantharaman K, Venturelli OS.},
journal = {Cell Host Microbe},
year = {2022},
doi = {10.1016/j.chom.2021.12.006},
pmid = {34995484}
}
@article{lin400212,
title = {Associations of Childhood and Perinatal Blood Metals with Children's Gut Microbiomes in a Canadian Gestation Cohort.},
author = {Shen Y, Laue HE, Shrubsole MJ, Wu H, Bloomquist TR, Larouche A, Zhao K, Gao F, Boivin A, Prada D, Hunting DJ, Gillet V, Takser L, Baccarelli AA.},
journal = {Environ Health Perspect},
year = {2022},
doi = {10.1289/ehp9674},
pmid = {35037767}
}
@article{lin399631,
title = {The Role of Gut Microbiota-Brain Axis in Pathophysiology of ADHD: A Systematic Review.},
author = {Shirvani-Rad S, Ejtahed HS, Ettehad Marvasti F, Taghavi M, Sharifi F, Arzaghi SM, Larijani B.},
journal = {J Atten Disord},
year = {2022},
doi = {10.1177/10870547211073474},
pmid = {35048732}
}
@article{lin81331,
title = {Cellular homologs of the double jelly-roll major capsid proteins clarify the origins of an ancient virus kingdom.},
author = {Krupovic M, Makarova KS, Koonin EV.},
journal = {Proc Natl Acad Sci U S A},
year = {2022},
doi = {10.1073/pnas.2120620119},
pmid = {35078938}
}
@article{lin81348,
title = {Project-based learning course on metabolic network modelling in computational systems biology.},
author = {Sauter T, Bintener T, Kishk A, Presta L, Prohaska T, Guignard D, Zeng N, Cipriani C, Arshad S, Pfau T, Martins Conde P, Pires Pacheco M.},
journal = {PLoS Comput Biol},
year = {2022},
doi = {10.1371/journal.pcbi.1009711},
pmid = {35085230}
}
@article{lin399926,
title = {Dynamic Alteration of the Gut Microbiota Associated with Obesity and Intestinal Inflammation in Ovariectomy C57BL/6 Mice.},
author = {Zhao H, Wang Q, Wang Q, Hu L, Xing S, Gong H, Liu Z, Qin P, Xu J, Du J, Ai W, Peng S, Li Y.},
journal = {Int J Endocrinol},
year = {2022},
doi = {10.1155/2022/6600158},
pmid = {35103060}
}
@article{lin81293,
title = {Under-Oil Autonomously Regulated Oxygen Microenvironments: A Goldilocks Principle-Based Approach for Microscale Cell Culture.},
author = {Li C, Humayun M, Walker GM, Park KY, Connors B, Feng J, Pellitteri Hahn MC, Scarlett CO, Li J, Feng Y, Clark RL, Hefti H, Schrope J, Venturelli OS, Beebe DJ.},
journal = {Adv Sci (Weinh)},
year = {2022},
doi = {10.1002/advs.202104510},
pmid = {35118834}
}
@article{lin81343,
title = {Strain-level fitness in the gut microbiome is an emergent property of glycans and a single metabolite.},
author = {Park SY, Rao C, Coyte KZ, Kuziel GA, Zhang Y, Huang W, Franzosa EA, Weng JK, Huttenhower C, Rakoff-Nahoum S.},
journal = {Cell},
year = {2022},
doi = {10.1016/j.cell.2022.01.002},
pmid = {35120663}
}
@article{lin399881,
title = {Gut Microbiome Alterations in Patients With Visceral Obesity Based on Quantitative Computed Tomography.},
author = {Yan H, Qin Q, Chen J, Yan S, Li T, Gao X, Yang Y, Li A, Ding S.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.823262},
pmid = {35127566}
}
@article{lin400380,
title = {Multiomics Analysis Reveals the Impact of Microbiota on Host Metabolism in Hepatic Steatosis.},
author = {Zeybel M, Arif M, Li X, Altay O, Yang H, Shi M, Akyildiz M, Saglam B, Gonenli MG, Yigit B, Ulukan B, Ural D, Shoaie S, Turkez H, Nielsen J, Zhang C, Uhlen M, Boren J, Mardinoglu A.},
journal = {Adv Sci (Weinh)},
year = {2022},
doi = {10.1002/advs.202104373},
pmid = {35128832}
}
@article{lin400275,
title = {Bacteroides acidifaciens in the gut plays a protective role against CD95-mediated liver injury.},
author = {Wang H, Wang Q, Yang C, Guo M, Cui X, Jing Z, Liu Y, Qiao W, Qi H, Zhang H, Zhang X, Zhao N, Zhang M, Chen M, Zhang S, Xu H, Zhao L, Qiao M, Wu Z.},
journal = {Gut Microbes},
year = {2022},
doi = {10.1080/19490976.2022.2027853},
pmid = {35129072}
}
@article{lin400249,
title = {Therapeutic Potential of Metabolites from Lactobacillus rhamnosus and Mare's Milk in the Treatment of Dysbiosis.},
author = {Kozhakhmetov S, Babenko D, Kozhakhmetova S, Tuyakova A, Nurgaziyev M, Nurgozhina A, Muhanbetganov N, Chulenbayeva L, Sergazy S, Gulyayev A, Aljofan M, Kushugulova A.},
journal = {Biomed Res Int},
year = {2022},
doi = {10.1155/2022/3851478},
pmid = {35132375}
}
@article{lin399657,
title = {Bacteroides species differentially modulate depression-like behavior via gut-brain metabolic signaling.},
author = {Zhang Y, Fan Q, Hou Y, Zhang X, Yin Z, Cai X, Wei W, Wang J, He D, Wang G, Yuan Y, Hao H, Zheng X.},
journal = {Brain Behav Immun},
year = {2022},
doi = {10.1016/j.bbi.2022.02.007},
pmid = {35143877}
}
@article{lin400325,
title = {Non-absorbable antibiotic treatment inhibits colorectal cancer liver metastasis by modulating deoxycholic acid metabolism by intestinal microbes.},
author = {Deng J, Yuan W, Tan Q, Wei X, Ma J.},
journal = {J Cancer},
year = {2022},
doi = {10.7150/jca.63490},
pmid = {35154445}
}
@article{lin81339,
title = {Paraphocaeicola brunensis gen. nov., sp. nov., Carrying Two Variants of nimB Resistance Gene from Bacteroides fragilis, and Caecibacteroides pullorum gen. nov., sp. nov., Two Novel Genera Isolated from Chicken Caeca.},
author = {Kralova S, Davidova-Gerzova L, Valcek A, Bezdicek M, Rychlik I, Rezacova V, Cizek A.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.01954-21},
pmid = {35170999}
}
@article{lin400310,
title = {Effect of Bifidobacterium bifidum on Clinical Characteristics and Gut Microbiota in Attention-Deficit/Hyperactivity Disorder.},
author = {Wang LJ, Yang CY, Kuo HC, Chou WJ, Tsai CS, Lee SY.},
journal = {J Pers Med},
year = {2022},
doi = {10.3390/jpm12020227},
pmid = {35207715}
}
@article{lin399843,
title = {Ten-Week Sucralose Consumption Induces Gut Dysbiosis and Altered Glucose and Insulin Levels in Healthy Young Adults.},
author = {Mendez-Garcia LA, Bueno-Hernandez N, Cid-Soto MA, De Leon KL, Mendoza-Martinez VM, Espinosa-Flores AJ, Carrero-Aguirre M, Esquivel-Velazquez M, Leon-Hernandez M, Viurcos-Sanabria R, Ruiz-Barranco A, Cota-Arce JM, Alvarez-Lee A, De Leon-Nava MA, Melendez G, Escobedo G.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10020434},
pmid = {35208888}
}
@article{lin400363,
title = {Characterization and Demonstration of Mock Communities as Control Reagents for Accurate Human Microbiome Community Measurements.},
author = {Tourlousse DM, Narita K, Miura T, Ohashi A, Matsuda M, Ohyama Y, Shimamura M, Furukawa M, Kasahara K, Kameyama K, Saito S, Goto M, Shimizu R, Mishima R, Nakayama J, Hosomi K, Kunisawa J, Terauchi J, Sekiguchi Y, Kawasaki H.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.01915-21},
pmid = {35234490}
}
@article{lin400038,
title = {Socioeconomic disparities and household crowding in association with the fecal microbiome of school-age children.},
author = {Lapidot Y, Reshef L, Maya M, Cohen D, Gophna U, Muhsen K.},
journal = {NPJ Biofilms Microbiomes},
year = {2022},
doi = {10.1038/s41522-022-00271-6},
pmid = {35241676}
}
@article{lin399637,
title = {Metabolism of a hybrid algal galactan by members of the human gut microbiome.},
author = {Robb CS, Hobbs JK, Pluvinage B, Reintjes G, Klassen L, Monteith S, Giljan G, Amundsen C, Vickers C, Hettle AG, Hills R, Nitin, Xing X, Montina T, Zandberg WF, Abbott DW, Boraston AB.},
journal = {Nat Chem Biol},
year = {2022},
doi = {10.1038/s41589-022-00983-y},
pmid = {35289327}
}
@article{lin400266,
title = {Strain-level profiling of viable microbial community by selective single-cell genome sequencing.},
author = {Hosokawa M, Endoh T, Kamata K, Arikawa K, Nishikawa Y, Kogawa M, Saeki T, Yoda T, Takeyama H.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-08401-y},
pmid = {35292746}
}
@article{lin400175,
title = {Metagenomics analysis reveals universal signatures of the intestinal microbiota in colorectal cancer, regardless of regional differences.},
author = {Berbert L, Santos A, Magro DO, Guadagnini D, Assalin HB, Lourenco LH, Martinez CAR, Saad MJA, Coy CSR.},
journal = {Braz J Med Biol Res},
year = {2022},
doi = {10.1590/1414-431x2022e11832},
pmid = {35293551}
}
@article{lin400246,
title = {Diagnostic, Prognostic, and Therapeutic Roles of Gut Microbiota in COVID-19: A Comprehensive Systematic Review.},
author = {Farsi Y, Tahvildari A, Arbabi M, Vazife F, Sechi LA, Shahidi Bonjar AH, Jamshidi P, Nasiri MJ, Mirsaeidi M.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.804644},
pmid = {35310853}
}
@article{lin400074,
title = {Gut Microbiota Alteration Influences Colorectal Cancer Metastasis to the Liver by Remodeling the Liver Immune Microenvironment.},
author = {Yuan N, Li X, Wang M, Zhang Z, Qiao L, Gao Y, Xu X, Zhi J, Li Y, Li Z, Jia Y.},
journal = {Gut Liver},
year = {2022},
doi = {10.5009/gnl210177},
pmid = {35318288}
}
@article{lin400179,
title = {Gut Microbial Characterization of Melon-Headed Whales (Peponocephala electra) Stranded in China.},
author = {Bai S, Zhang P, Zhang X, Yang Z, Li S.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10030572},
pmid = {35336147}
}
@article{lin400183,
title = {Bifidobacterium lactis Probio-M8 Adjuvant Treatment Confers Added Benefits to Patients with Coronary Artery Disease via Target Modulation of the Gut-Heart/-Brain Axes.},
author = {Sun B, Ma T, Li Y, Yang N, Li B, Zhou X, Guo S, Zhang S, Kwok LY, Sun Z, Zhang H.},
journal = {mSystems},
year = {2022},
doi = {10.1128/msystems.00100-22},
pmid = {35343796}
}
@article{lin399781,
title = {Design and optimization of a 16S microbial qPCR multiplex for the presumptive identification of feces, saliva, vaginal and menstrual secretions.},
author = {Lewis C, Seashols-Williams SJ.},
journal = {J Forensic Sci},
year = {2022},
doi = {10.1111/1556-4029.15029},
pmid = {35352345}
}
@article{lin399634,
title = {Gut microbiome and attention deficit/hyperactivity disorder: a systematic review.},
author = {Gkougka D, Mitropoulos K, Tzanakaki G, Panagouli E, Psaltopoulou T, Thomaidis L, Tsolia M, Sergentanis TN, Tsitsika A.},
journal = {Pediatr Res},
year = {2022},
doi = {10.1038/s41390-022-02027-6},
pmid = {35354932}
}
@article{lin399839,
title = {Novel Catabolic Pathway of Quercetin-3-O-Rutinose-7-O-alpha-L-Rhamnoside by Lactobacillus plantarum GDMCC 1.140: The Direct Fission of C-Ring.},
author = {Huang G, Lai M, Xu C, He S, Dong L, Huang F, Zhang R, Young DJ, Liu H, Su D.},
journal = {Front Nutr},
year = {2022},
doi = {10.3389/fnut.2022.849439},
pmid = {35369057}
}
@article{lin400168,
title = {Investigation of the Ecological Link between Recurrent Microbial Human Gut Communities and Physical Activity.},
author = {Tarracchini C, Fontana F, Lugli GA, Mancabelli L, Alessandri G, Turroni F, Ventura M, Milani C.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.00420-22},
pmid = {35377222}
}
@article{lin399609,
title = {Bacteremia With Anaerobic Bacteria and Association With Colorectal Cancer: A Population-based Cohort Study.},
author = {Justesen US, Nielsen SL, Jensen TG, Dessau RB, Moller JK, Coia JE, Andersen SL, Pedersen C, Gradel KO.},
journal = {Clin Infect Dis},
year = {2022},
doi = {10.1093/cid/ciac259},
pmid = {35380653}
}
@article{lin81326,
title = {Basis of narrow-spectrum activity of fidaxomicin on Clostridioides difficile.},
author = {Cao X, Boyaci H, Chen J, Bao Y, Landick R, Campbell EA.},
journal = {Nature},
year = {2022},
doi = {10.1038/s41586-022-04545-z},
pmid = {35388215}
}
@article{lin400338,
title = {Bacterial and Fungal Adaptations in Cecum and Distal Colon of Piglets Fed With Dairy-Based Milk Formula in Comparison With Human Milk.},
author = {Elolimy A, Rosa F, Tripp P, Zeineldin M, Bowlin AK, Randolph C, Robeson MS, Yeruva L.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.801854},
pmid = {35401465}
}
@article{lin399834,
title = {Protocatechuic Acid, a Gut Bacterial Metabolite of Black Raspberries, Inhibits Adenoma Development and Alters Gut Microbiome Profiles in Apc Min/+ Mice.},
author = {Dong A, Lin CW, Echeveste CE, Huang YW, Oshima K, Yearsley M, Chen X, Yu J, Wang LS.},
journal = {J Cancer Prev},
year = {2022},
doi = {10.15430/jcp.2022.27.1.50},
pmid = {35419306}
}
@article{lin399650,
title = {Predictive Role of Gut Microbiota in Weight Loss Achievement after Bariatric Surgery.},
author = {Gutierrez-Repiso C, Garrido-Sanchez L, Alcaide-Torres J, Cornejo-Pareja I, Ocana-Wilhelmi L, Garcia-Fuentes E, Moreno-Indias I, Tinahones FJ.},
journal = {J Am Coll Surg},
year = {2022},
doi = {10.1097/xcs.0000000000000145},
pmid = {35426398}
}
@article{lin399954,
title = {Early indicators of microbial strain dysbiosis in the human gastrointestinal microbial community of certain healthy humans and hospitalized COVID-19 patients.},
author = {Koo H, Morrow CD.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-10472-w},
pmid = {35449389}
}
@article{lin400177,
title = {The Gut Microbiome May Help Address Mental Health Disparities in Hispanics: A Narrative Review.},
author = {Vera-Urbina F, Dos Santos-Torres MF, Godoy-Vitorino F, Torres-Hernandez BA.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10040763},
pmid = {35456813}
}
@article{lin400261,
title = {Products of gut microbial Toll/interleukin-1 receptor domain NADase activities in gnotobiotic mice and Bangladeshi children with malnutrition.},
author = {Weagley JS, Zaydman M, Venkatesh S, Sasaki Y, Damaraju N, Yenkin A, Buchser W, Rodionov DA, Osterman A, Ahmed T, Barratt MJ, DiAntonio A, Milbrandt J, Gordon JI.},
journal = {Cell Rep},
year = {2022},
doi = {10.1016/j.celrep.2022.110738},
pmid = {35476981}
}
@article{lin400119,
title = {Methotrexate promotes recovery of arthritis-induced alveolar bone loss and modifies the composition of the oral-gut microbiota.},
author = {de Arruda JAA, Correa JD, Singh Y, Oliveira SR, Machado CC, Schneider AH, Medeiros JD, Fernandes GR, Macari S, Barrioni BR, Santos MS, Duffles LF, Nakaya HTI, Fukada SY, Graves DT, Cunha FQ, Silva TA.},
journal = {Anaerobe},
year = {2022},
doi = {10.1016/j.anaerobe.2022.102577},
pmid = {35490916}
}
@article{lin400076,
title = {Clinico-microbiological profile of Bacteroides fragilis with focus on molecular detection of emerging resistance.},
author = {Gupta A, Shenoy PA, Kumar A, Chawla K.},
journal = {Indian J Med Res},
year = {2021},
doi = {10.4103/ijmr.ijmr_2568_19},
pmid = {35532593}
}
@article{lin400210,
title = {Elucidating Sequence and Structural Determinants of Carbohydrate Esterases for Complete Deacetylation of Substituted Xylans.},
author = {Penttinen L, Kouhi V, Faure R, Skarina T, Stogios P, Master E, Jurak E.},
journal = {Molecules},
year = {2022},
doi = {10.3390/molecules27092655},
pmid = {35566004}
}
@article{lin400245,
title = {Prediction of Pathogenic Factors in Dysbiotic Gut Microbiomes of Colorectal Cancer Patients Using Reverse Microbiomics.},
author = {Wang H, Zhang K, Wu L, Qin Q, He Y.},
journal = {Front Oncol},
year = {2022},
doi = {10.3389/fonc.2022.882874},
pmid = {35574378}
}
@article{lin399779,
title = {Intestinal microbiota composition of children with infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and multisystem inflammatory syndrome (MIS-C).},
author = {Suskun C, Kilic O, Yilmaz Ciftdogan D, Guven S, Karbuz A, Ozkaya Parlakay A, Kara Y, Kacmaz E, Sahin A, Boga A, Kizmaz Isancli D, Gulhan B, Kanik-Yuksek S, Kiral E, Bozan G, Arslanoglu MO, Kizil MC, Dinleyici M, Us T, Varis A, Kaya M, Vandenplas Y, Dinleyici EC.},
journal = {Eur J Pediatr},
year = {2022},
doi = {10.1007/s00431-022-04494-9},
pmid = {35585256}
}
@article{lin399984,
title = {Disruption of Genes Encoding Putative Zwitterionic Capsular Polysaccharides of Diverse Intestinal Bacteroides Reduces the Induction of Host Anti-Inflammatory Factors.},
author = {Arnolds KL, Yamada E, Neff CP, Schneider JM, Palmer BE, Lozupone CA.},
journal = {Microb Ecol},
year = {2023},
doi = {10.1007/s00248-022-02037-1},
pmid = {35596750}
}
@article{lin400082,
title = {The role of non-Helicobacter pylori bacteria in the pathogenesis of gastroduodenal diseases.},
author = {Waskito LA, Rezkitha YAA, Vilaichone RK, Sugihartono T, Mustika S, Dewa Nyoman Wibawa I, Yamaoka Y, Miftahussurur M.},
journal = {Gut Pathog},
year = {2022},
doi = {10.1186/s13099-022-00494-0},
pmid = {35606878}
}
@article{lin399841,
title = {Glucosylceramide Changes Bacterial Metabolism and Increases Gram-Positive Bacteria through Tolerance to Secondary Bile Acids In Vitro.},
author = {Dai H, Otsuka A, Tanabe K, Yanagita T, Nakayama J, Kitagaki H.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms23105300},
pmid = {35628110}
}
@article{lin400078,
title = {Fecal microbiota transplantation from patients with rheumatoid arthritis causes depression-like behaviors in mice through abnormal T cells activation.},
author = {Pu Y, Zhang Q, Tang Z, Lu C, Wu L, Zhong Y, Chen Y, Hashimoto K, Luo Y, Liu Y.},
journal = {Transl Psychiatry},
year = {2022},
doi = {10.1038/s41398-022-01993-z},
pmid = {35650202}
}
@article{lin399975,
title = {Vaping-Induced Sepsis and Rapidly Evolving Pleural Effusion in a Young, Otherwise Healthy Male.},
author = {Malik B, Kalantary A, Ghatol A, Kunadi A.},
journal = {Cureus},
year = {2022},
doi = {10.7759/cureus.25327},
pmid = {35651984}
}
@article{lin400369,
title = {Exploring the Ecological Effects of Naturally Antibiotic-Insensitive Bifidobacteria in the Recovery of the Resilience of the Gut Microbiota during and after Antibiotic Treatment.},
author = {Argentini C, Mancabelli L, Alessandri G, Tarracchini C, Barbetti M, Carnevali L, Longhi G, Viappiani A, Anzalone R, Milani C, Sgoifo A, van Sinderen D, Ventura M, Turroni F.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.00522-22},
pmid = {35652662}
}
@article{lin4558,
title = {Bacteroides humanifaecis sp. nov., isolated from faeces of healthy Korean.},
author = {Kim HS, Kim JS, Suh MK, Eom MK, Lee JH, Park SH, Kang SW, Lee DH, Yoon H, Lee JH, Lee JS},
journal = {Arch Microbiol},
year = {2022},
doi = {10.1007/s00203-022-02967-x},
pmid = {35657444}
}
@article{lin400152,
title = {Quantifying the impact of ecological memory on the dynamics of interacting communities.},
author = {Khalighi M, Sommeria-Klein G, Gonze D, Faust K, Lahti L.},
journal = {PLoS Comput Biol},
year = {2022},
doi = {10.1371/journal.pcbi.1009396},
pmid = {35658019}
}
@article{lin400191,
title = {Systematic review of donor and recipient predictive biomarkers of response to faecal microbiota transplantation in patients with ulcerative colitis.},
author = {Rees NP, Shaheen W, Quince C, Tselepis C, Horniblow RD, Sharma N, Beggs AD, Iqbal TH, Quraishi MN.},
journal = {EBioMedicine},
year = {2022},
doi = {10.1016/j.ebiom.2022.104088},
pmid = {35660786}
}
@article{lin399952,
title = {The Role of the Microbiome in Gastroentero-Pancreatic Neuroendocrine Neoplasms (GEP-NENs).},
author = {Mohamed A, Asa SL, McCormick T, Al-Shakhshir H, Dasari A, Mauricio R, Salem I, Ocuin LM, Bajor D, Lee RT, Selfridge JE, Kardan A, Lee Z, Avril N, Kopp S, Winter JM, Hardacre JM, Ammori JB, Ghannoum MA.},
journal = {Curr Issues Mol Biol},
year = {2022},
doi = {10.3390/cimb44050136},
pmid = {35678665}
}
@article{lin400072,
title = {Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomes.},
author = {Zhang L, Jonscher KR, Zhang Z, Xiong Y, Mueller RS, Friedman JE, Pan C.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-31227-1},
pmid = {35729161}
}
@article{lin400304,
title = {Marine Chitooligosaccharide Alters Intestinal Flora Structure and Regulates Hepatic Inflammatory Response to Influence Nonalcoholic Fatty Liver Disease.},
author = {Feng J, Liu Y, Chen J, Bai Y, He J, Cao H, Che Q, Guo J, Su Z.},
journal = {Mar Drugs},
year = {2022},
doi = {10.3390/md20060383},
pmid = {35736186}
}
@article{lin81302,
title = {Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics.},
author = {Baranwal M, Clark RL, Thompson J, Sun Z, Hero AO, Venturelli OS.},
journal = {Elife},
year = {2022},
doi = {10.7554/elife.73870},
pmid = {35736613}
}
@article{lin400196,
title = {Gut Microbial Profile in Asymptomatic Gallstones.},
author = {Song ST, Cai LY, Zeng X, Xie WF.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.882265},
pmid = {35770155}
}
@article{lin399769,
title = {Association between the Blautia/Bacteroides Ratio and Altered Body Mass Index after Bariatric Surgery.},
author = {Kim Y, Son D, Kim BK, Kim KH, Seo KW, Jung K, Park SJ, Lim S, Kim JH.},
journal = {Endocrinol Metab (Seoul)},
year = {2022},
doi = {10.3803/enm.2022.1481},
pmid = {35798551}
}
@article{lin81349,
title = {Mucolytic bacteria license pathobionts to acquire host-derived nutrients during dietary nutrient restriction.},
author = {Sugihara K, Kitamoto S, Saraithong P, Nagao-Kitamoto H, Hoostal M, McCarthy C, Rosevelt A, Muraleedharan CK, Gillilland MG, Imai J, Omi M, Bishu S, Kao JY, Alteri CJ, Barnich N, Schmidt TM, Nusrat A, Inohara N, Golob JL, Kamada N.},
journal = {Cell Rep},
year = {2022},
doi = {10.1016/j.celrep.2022.111093},
pmid = {35858565}
}
@article{lin400135,
title = {Study of Correlation between Intestinal Microbiota and Traditional Chinese Medicine Syndrome of Patients with Colon Cancer.},
author = {Tuo LY, Zhang ZR, Xin H, Chu X, Xu W.},
journal = {Evid Based Complement Alternat Med},
year = {2022},
doi = {10.1155/2022/2989456},
pmid = {35859998}
}
@article{lin400127,
title = {Novel Insights into the Pig Gut Microbiome Using Metagenome-Assembled Genomes.},
author = {Holman DB, Kommadath A, Tingley JP, Abbott DW.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.02380-22},
pmid = {35880887}
}
@article{lin400100,
title = {Modeling spatial interaction networks of the gut microbiota.},
author = {Cao X, Dong A, Kang G, Wang X, Duan L, Hou H, Zhao T, Wu S, Liu X, Huang H, Wu R.},
journal = {Gut Microbes},
year = {2022},
doi = {10.1080/19490976.2022.2106103},
pmid = {35921525}
}
@article{lin56752,
title = {Bacteroides muris sp. nov. isolated from the cecum of wild-derived house mice.},
author = {Fokt H, Unni R, Repnik U, Schmitz RA, Bramkamp M, Baines JF, Unterweger D},
journal = {Arch Microbiol},
year = {2022},
doi = {10.1007/s00203-022-03148-6},
pmid = {35939214}
}
@article{lin400284,
title = {Multi-omics analysis reveals gut microbiota-induced intramuscular fat deposition via regulating expression of lipogenesis-associated genes.},
author = {Xie C, Teng J, Wang X, Xu B, Niu Y, Ma L, Yan X.},
journal = {Anim Nutr},
year = {2022},
doi = {10.1016/j.aninu.2021.10.010},
pmid = {35949981}
}
@article{lin400340,
title = {Neonatal Diet and Gut Microbiome Development After C-Section During the First Three Months After Birth: A Systematic Review.},
author = {Pivrncova E, Kotaskova I, Thon V.},
journal = {Front Nutr},
year = {2022},
doi = {10.3389/fnut.2022.941549},
pmid = {35967823}
}
@article{lin400009,
title = {Stage-specific roles of microbial dysbiosis and metabolic disorders in rheumatoid arthritis.},
author = {Cheng M, Zhao Y, Cui Y, Zhong C, Zha Y, Li S, Cao G, Li M, Zhang L, Ning K, Han J.},
journal = {Ann Rheum Dis},
year = {2022},
doi = {10.1136/ard-2022-222871},
pmid = {35985811}
}
@article{lin400171,
title = {Case report: Meningitis and intracranial aneurysm caused by mixed infection of oral microflora dominated by anaerobes.},
author = {Cheng H, Xu L, Yang F, Jia L, Zhao D, Li H, Liu W, Li Y, Liu X, Geng X, Guo J, Ling C, Zhang J.},
journal = {Front Neurol},
year = {2022},
doi = {10.3389/fneur.2022.889838},
pmid = {35989934}
}
@article{lin400107,
title = {Alterations of the Gut Microbiome in Patients With Pituitary Adenoma.},
author = {Hu J, Yang J, Chen L, Meng X, Zhang X, Li W, Li Z, Huang G.},
journal = {Pathol Oncol Res},
year = {2022},
doi = {10.3389/pore.2022.1610402},
pmid = {35991836}
}
@article{lin399920,
title = {The Role of a Spinning Top Urethra in the Development of Pyosalpinx in a Precoital Female.},
author = {Andrews TJ, Hicar M, Islam S.},
journal = {Cureus},
year = {2022},
doi = {10.7759/cureus.27099},
pmid = {36000094}
}
@article{lin399974,
title = {Fecal microbiota transplantation treatment for type 1 diabetes mellitus with malnutrition: a case report.},
author = {Xie YC, Jing XB, Chen X, Chen LZ, Zhang SH, Cai XB.},
journal = {Ther Adv Chronic Dis},
year = {2022},
doi = {10.1177/20406223221117449},
pmid = {36003287}
}
@article{lin400330,
title = {The prebiotic and anti-fatigue effects of hyaluronan.},
author = {Huang G, Su L, Zhang N, Han R, Leong WK, Li X, Ren X, Hsiao WLW.},
journal = {Front Nutr},
year = {2022},
doi = {10.3389/fnut.2022.977556},
pmid = {36003835}
}
@article{lin400116,
title = {Gut Microbiota Composition in Prediabetes and Newly Diagnosed Type 2 Diabetes: A Systematic Review of Observational Studies.},
author = {Letchumanan G, Abdullah N, Marlini M, Baharom N, Lawley B, Omar MR, Mohideen FBS, Addnan FH, Nur Fariha MM, Ismail Z, Pathmanathan SG.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.943427},
pmid = {36046745}
}
@article{lin400252,
title = {Cranberry polyphenols and agave agavins impact gut immune response and microbiota composition while improving gut barrier function, inflammation, and glucose metabolism in mice fed an obesogenic diet.},
author = {Medina-Larque AS, Rodriguez-Daza MC, Roquim M, Dudonne S, Pilon G, Levy E, Marette A, Roy D, Jacques H, Desjardins Y.},
journal = {Front Immunol},
year = {2022},
doi = {10.3389/fimmu.2022.871080},
pmid = {36052065}
}
@article{lin81363,
title = {Design, construction, and in vivo augmentation of a complex gut microbiome.},
author = {Cheng AG, Ho PY, Aranda-Diaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA.},
journal = {Cell},
year = {2022},
doi = {10.1016/j.cell.2022.08.003},
pmid = {36070752}
}
@article{lin400222,
title = {Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiome.},
author = {Ravi A, Troncoso-Rey P, Ahn-Jarvis J, Corbin KR, Harris S, Harris H, Aydin A, Kay GL, Le Viet T, Gilroy R, Pallen MJ, Page AJ, O'Grady J, Warren FJ.},
journal = {Commun Biol},
year = {2022},
doi = {10.1038/s42003-022-03865-0},
pmid = {36076058}
}
@article{lin399802,
title = {Effects of Auricularia auricula Polysaccharides on Gut Microbiota and Metabolic Phenotype in Mice.},
author = {Liu Q, An X, Chen Y, Deng Y, Niu H, Ma R, Zhao H, Cao W, Wang X, Wang M.},
journal = {Foods},
year = {2022},
doi = {10.3390/foods11172700},
pmid = {36076885}
}
@article{lin400001,
title = {Time series strain tracking analysis post fecal transplantation identifies individual specific patterns of fecal dominant donor, recipient, and unrelated microbial strains.},
author = {Koo H, Morrow CD.},
journal = {PLoS One},
year = {2022},
doi = {10.1371/journal.pone.0274633},
pmid = {36107983}
}
@article{lin81308,
title = {Complete Genome Sequences of Two Bacteroides uniformis Bacteriophages.},
author = {Bean EM, Morella NM, Dey N.},
journal = {Microbiol Resour Announc},
year = {2022},
doi = {10.1128/mra.00610-22},
pmid = {36121235}
}
@article{lin400381,
title = {In-Silico Characterization of Estrogen Reactivating beta-Glucuronidase Enzyme in GIT Associated Microbiota of Normal Human and Breast Cancer Patients.},
author = {Muccee F, Ghazanfar S, Ajmal W, Al-Zahrani M.},
journal = {Genes (Basel)},
year = {2022},
doi = {10.3390/genes13091545},
pmid = {36140713}
}
@article{lin400267,
title = {Transmission of the gut microbiome in cohousing goats and pigs.},
author = {Zhang T, Li M, Shi T, Yan Y, Niyazbekova Z, Wang X, Li Z, Jiang Y.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.948617},
pmid = {36160207}
}
@article{lin400328,
title = {The science behind TCM and Gut microbiota interaction-their combinatorial approach holds promising therapeutic applications.},
author = {Xia W, Liu B, Tang S, Yasir M, Khan I.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.875513},
pmid = {36176581}
}
@article{lin400317,
title = {Gut microbe metabolism of small molecules supports human development across the early stages of life.},
author = {Tarracchini C, Fontana F, Mancabelli L, Lugli GA, Alessandri G, Turroni F, Ventura M, Milani C.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1006721},
pmid = {36177457}
}
@article{lin400253,
title = {Gut dysbiosis and inflammatory blood markers precede HIV with limited changes after early seroconversion.},
author = {Fulcher JA, Li F, Tobin NH, Zabih S, Elliott J, Clark JL, D'Aquila R, Mustanski B, Kipke MD, Shoptaw S, Gorbach PM, Aldrovandi GM.},
journal = {EBioMedicine},
year = {2022},
doi = {10.1016/j.ebiom.2022.104286},
pmid = {36179550}
}
@article{lin400032,
title = {Deep metagenomic characterization of gut microbial community and function in preeclampsia.},
author = {Lv LJ, Li SH, Wen JY, Wang GY, Li H, He TW, Lv QB, Xiao MC, Duan HL, Chen MC, Yi ZT, Yan QL, Yin AH.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.933523},
pmid = {36189343}
}
@article{lin400406,
title = {Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: a step toward understanding patient subgroups.},
author = {West KA, Yin X, Rutherford EM, Wee B, Choi J, Chrisman BS, Dunlap KL, Hannibal RL, Hartono W, Lin M, Raack E, Sabino K, Wu Y, Wall DP, David MM, Dabbagh K, DeSantis TZ, Iwai S.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-21327-9},
pmid = {36220843}
}
@article{lin400242,
title = {Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians.},
author = {Gounot JS, Chia M, Bertrand D, Saw WY, Ravikrishnan A, Low A, Low A, Ding Y, Ng AHQ, Tan LWL, Teo YY, Seedorf H, Nagarajan N.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-33782-z},
pmid = {36229545}
}
@article{lin400174,
title = {Amoxicillin modulates gut microbiota to improve short-term high-fat diet induced pathophysiology in mice.},
author = {Kumar S, Raj VS, Ahmad A, Saini V.},
journal = {Gut Pathog},
year = {2022},
doi = {10.1186/s13099-022-00513-0},
pmid = {36229889}
}
@article{lin400025,
title = {Intestinal Microbiota Influence Doxorubicin Responsiveness in Triple-Negative Breast Cancer.},
author = {Bawaneh A, Wilson AS, Levi N, Howard-McNatt MM, Chiba A, Soto-Pantoja DR, Cook KL.},
journal = {Cancers (Basel)},
year = {2022},
doi = {10.3390/cancers14194849},
pmid = {36230772}
}
@article{lin400405,
title = {Nutritional composition, heavy metal content and in vitro effect on the human gut microbiota of Talitrus saltator, an underutilized crustacean from the Atlantic coast.},
author = {Lopez-Santamarina A, Cardelle-Cobas A, Lamas A, Mondragon-Portocarrero A, Cepeda A, Miranda JM.},
journal = {Front Nutr},
year = {2022},
doi = {10.3389/fnut.2022.943133},
pmid = {36313116}
}
@article{lin399955,
title = {Elucidating the gut microbiome alterations of tribal community of Arunachal Pradesh: perspectives on their lifestyle or food habits.},
author = {Hazarika P, Chattopadhyay I, Umpo M, Choudhury Y, Sharma I.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-23124-w},
pmid = {36316382}
}
@article{lin399807,
title = {Assessing the Dark Field of Metaproteome.},
author = {Duan H, Cheng K, Ning Z, Li L, Mayne J, Sun Z, Figeys D.},
journal = {Anal Chem},
year = {2022},
doi = {10.1021/acs.analchem.2c02452},
pmid = {36327159}
}
@article{lin400332,
title = {Faecal microbiome-based machine learning for multi-class disease diagnosis.},
author = {Su Q, Liu Q, Lau RI, Zhang J, Xu Z, Yeoh YK, Leung TWH, Tang W, Zhang L, Liang JQY, Yau YK, Zheng J, Liu C, Zhang M, Cheung CP, Ching JYL, Tun HM, Yu J, Chan FKL, Ng SC.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-34405-3},
pmid = {36357393}
}
@article{lin399861,
title = {A Clinical Outcome of the Anti-PD-1 Therapy of Melanoma in Polish Patients Is Mediated by Population-Specific Gut Microbiome Composition.},
author = {Pietrzak B, Tomela K, Olejnik-Schmidt A, Galus L, Mackiewicz J, Kaczmarek M, Mackiewicz A, Schmidt M.},
journal = {Cancers (Basel)},
year = {2022},
doi = {10.3390/cancers14215369},
pmid = {36358789}
}
@article{lin399818,
title = {Exploring Next Generation Probiotics for Metabolic and Microbiota Dysbiosis Linked to Xenobiotic Exposure: Holistic Approach.},
author = {Torres-Sanchez A, Ruiz-Rodriguez A, Ortiz P, Moreno MA, Ampatzoglou A, Gruszecka-Kosowska A, Monteoliva-Sanchez M, Aguilera M.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms232112917},
pmid = {36361709}
}
@article{lin400166,
title = {Modulation of the Gut Microbiota in Memory Impairment and Alzheimer's Disease via the Inhibition of the Parasympathetic Nervous System.},
author = {Park S, Wu X.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms232113574},
pmid = {36362360}
}
@article{lin399772,
title = {Interplay of Lymphocytes with the Intestinal Microbiota in Children with Nonalcoholic Fatty Liver Disease.},
author = {Liang T, Li D, Zunong J, Li M, Amaerjiang N, Xiao H, Khattab NM, Vermund SH, Hu Y.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14214641},
pmid = {36364902}
}
@article{lin400170,
title = {Amoxicillin impact on pathophysiology induced by short term high salt diet in mice.},
author = {Kumar S, Perumal N, Yadav PK, Pandey RP, Chang CM, Raj VS.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-21270-9},
pmid = {36369512}
}
@article{lin400158,
title = {Microbiome insights into pediatric familial adenomatous polyposis.},
author = {Attard TM, Septer S, Lawson CE, Attard MI, Lee STM, Umar S.},
journal = {Orphanet J Rare Dis},
year = {2022},
doi = {10.1186/s13023-022-02569-2},
pmid = {36376984}
}
@article{lin400387,
title = {Stronger gut microbiome modulatory effects by postbiotics than probiotics in a mouse colitis model.},
author = {Zhang T, Zhang W, Feng C, Kwok LY, He Q, Sun Z.},
journal = {NPJ Sci Food},
year = {2022},
doi = {10.1038/s41538-022-00169-9},
pmid = {36379940}
}
@article{lin400393,
title = {Gut microbiome of captive wolves is more similar to domestic dogs than wild wolves indicated by metagenomics study.},
author = {Chen L, Sun M, Xu D, Gao Z, Shi Y, Wang S, Zhou Y.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1027188},
pmid = {36386659}
}
@article{lin399791,
title = {Functional recovery outcomes following acute stroke is associated with abundance of gut microbiota related to inflammation, butyrate and secondary bile acid.},
author = {Hammond TC, Powell E, Green SJ, Chlipala G, Frank J, Yackzan AT, Yanckello LM, Chang YH, Xing X, Heil S, Springer JE, Pennypacker K, Stromberg A, Sawaki L, Lin AL.},
journal = {Front Rehabil Sci},
year = {2022},
doi = {10.3389/fresc.2022.1017180},
pmid = {36386777}
}
@article{lin400041,
title = {The gut microbiota modulates responses to anti-PD-1 and chemotherapy combination therapy and related adverse events in patients with advanced solid tumors.},
author = {Wu Z, Zhang S, Li L, Huang Z, Huang D, Hu Y.},
journal = {Front Oncol},
year = {2022},
doi = {10.3389/fonc.2022.887383},
pmid = {36387171}
}
@article{lin399828,
title = {Fecal Bacterial Community and Metagenome Function in Asians with Type 2 Diabetes, According to Enterotypes.},
author = {Wu X, Park S.},
journal = {Biomedicines},
year = {2022},
doi = {10.3390/biomedicines10112998},
pmid = {36428566}
}
@article{lin399684,
title = {Fecal Microbiota Transplantation May Represent a Good Approach for Patients with Focal Segmental Glomerulosclerosis: A Brief Report.},
author = {Zhi W, Yuan X, Song W, Jin G, Li Y.},
journal = {J Clin Med},
year = {2022},
doi = {10.3390/jcm11226700},
pmid = {36431177}
}
@article{lin400057,
title = {Risk Factors Associated with Severe Clostridioides difficile Infection in Patients with Cancer.},
author = {Francisco DMA, Zhang L, Jiang Y, Olvera A, Adachi J, Guevara EY, Aitken SL, Garey KW, Peterson CB, Do KA, Dillon R, Obi EN, Jenq R, Okhuysen PC.},
journal = {Infect Dis Ther},
year = {2023},
doi = {10.1007/s40121-022-00722-9},
pmid = {36443547}
}
@article{lin400156,
title = {Gut fungi differentially response to the antipyretic (heat-clearing) and diaphoretic (exterior-releasing) traditional Chinese medicines in Coptis chinensis-conditioned gut microbiota.},
author = {Yang Y, Lu W, Zhang X, Wu C.},
journal = {Front Pharmacol},
year = {2022},
doi = {10.3389/fphar.2022.1032919},
pmid = {36467054}
}
@article{lin399837,
title = {MagMD: Database summarizing the metabolic action of gut microbiota to drugs.},
author = {Zhou J, Ouyang J, Gao Z, Qin H, Jun W, Shi T.},
journal = {Comput Struct Biotechnol J},
year = {2022},
doi = {10.1016/j.csbj.2022.11.021},
pmid = {36467581}
}
@article{lin400379,
title = {Broad host range may be a key to long-term persistence of bacteriophages infecting intestinal Bacteroidaceae species.},
author = {Hedzet S, Rupnik M, Accetto T.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-25636-x},
pmid = {36473906}
}
@article{lin400383,
title = {Microbial vitamin production mediates dietary effects on diabetic risk.},
author = {Wang D, Pham VT, Steinert RE, Zhernakova A, Fu J.},
journal = {Gut Microbes},
year = {2022},
doi = {10.1080/19490976.2022.2154550},
pmid = {36474346}
}
@article{lin400099,
title = {Multicenter Evaluation of the FilmArray Blood Culture Identification 2 Panel for Pathogen Detection in Bloodstream Infections.},
author = {Camelena F, Pean de Ponfilly G, Pailhories H, Bonzon L, Alanio A, Poncin T, Lafaurie M, Depret F, Cambau E, Godreuil S, Chenouard R, Le Monnier A, Jacquier H, Bercot B.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.02547-22},
pmid = {36519852}
}
@article{lin399705,
title = {Fecal microbiota transplantation restores normal fecal composition and delays malignant development of mild chronic kidney disease in rats.},
author = {Liu X, Zhang M, Wang X, Liu P, Wang L, Li Y, Wang X, Ren F.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1037257},
pmid = {36532422}
}
@article{lin400327,
title = {Gut-microbiome-based predictive model for ST-elevation myocardial infarction in young male patients.},
author = {Liu M, Wang M, Peng T, Ma W, Wang Q, Niu X, Hu L, Qi B, Guo D, Ren G, Geng J, Wang D, Song L, Hu J, Li Y.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1031878},
pmid = {36532426}
}
@article{lin399618,
title = {[Correlation analysis of age and microbial characteristics in saliva and feces of high-risk population of upper gastrointestinal cancer].},
author = {Li MJ, Shao DT, Zhou JC, Gu JH, Fan ZY, Qin JJ, Li XQ, Hao CQ, Wei WW.},
journal = {Zhonghua Yu Fang Yi Xue Za Zhi},
year = {2022},
doi = {10.3760/cma.j.cn112150-20220715-00720},
pmid = {36536563}
}
@article{lin400217,
title = {Characterization of Fecal Microbiomes of Osteoporotic Patients in Korea.},
author = {Ul-Haq A, Seo H, Jo S, Park H, Kim S, Lee Y, Lee S, Jeong JH, Song HY.},
journal = {Pol J Microbiol},
year = {2022},
doi = {10.33073/pjm-2022-045},
pmid = {36537058}
}
@article{lin400181,
title = {Gastrointestinal Microbiota and Breast Cancer Chemotherapy Interactions: A Systematic Review.},
author = {Csendes D, Gutlapalli SD, Prakash K, Swarnakari KM, Bai M, Manoharan MP, Raja R, Jamil A, Desai A, Desai DM, Khan S.},
journal = {Cureus},
year = {2022},
doi = {10.7759/cureus.31648},
pmid = {36540440}
}
@article{lin399597,
title = {Spraying compound probiotics improves growth performance and immunity and modulates gut microbiota and blood metabolites of suckling piglets.},
author = {Huang W, Ma T, Liu Y, Kwok LY, Li Y, Jin H, Zhao F, Shen X, Shi X, Sun Z, Zhang H.},
journal = {Sci China Life Sci},
year = {2023},
doi = {10.1007/s11427-022-2229-1},
pmid = {36543996}
}
@article{lin81346,
title = {Two distinct gut microbial pathways contribute to meta-organismal production of phenylacetylglutamine with links to cardiovascular disease.},
author = {Zhu Y, Dwidar M, Nemet I, Buffa JA, Sangwan N, Li XS, Anderson JT, Romano KA, Fu X, Funabashi M, Wang Z, Keranahalli P, Battle S, Tittle AN, Hajjar AM, Gogonea V, Fischbach MA, DiDonato JA, Hazen SL.},
journal = {Cell Host Microbe},
year = {2023},
doi = {10.1016/j.chom.2022.11.015},
pmid = {36549300}
}
@article{lin400132,
title = {Integrative metagenomic and metabolomic analyses reveal gut microbiota-derived multiple hits connected to development of gestational diabetes mellitus in humans.},
author = {Ye D, Huang J, Wu J, Xie K, Gao X, Yan K, Zhang P, Tao Y, Li Y, Zang S, Rong X, Li J, Guo J.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2022.2154552},
pmid = {36550785}
}
@article{lin400352,
title = {Commensal Intestinal Protozoa-Underestimated Members of the Gut Microbial Community.},
author = {Dubik M, Pilecki B, Moeller JB.},
journal = {Biology (Basel)},
year = {2022},
doi = {10.3390/biology11121742},
pmid = {36552252}
}
@article{lin400053,
title = {Lower Genital Tract Microbiome in Early Pregnancy in the Eastern European Population.},
author = {Gryaznova M, Lebedeva O, Kozarenko O, Smirnova Y, Burakova I, Syromyatnikov M, Maslov A, Popov V.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10122368},
pmid = {36557621}
}
@article{lin399994,
title = {Machine learning framework for gut microbiome biomarkers discovery and modulation analysis in large-scale obese population.},
author = {Liu Y, Zhu J, Wang H, Lu W, Lee YK, Zhao J, Zhang H.},
journal = {BMC Genomics},
year = {2022},
doi = {10.1186/s12864-022-09087-2},
pmid = {36564713}
}
@article{lin400047,
title = {Metagenomic analysis of the interaction between the gut microbiota and colorectal cancer: a paired-sample study based on the GMrepo database.},
author = {Chen H, Jiao J, Wei M, Jiang X, Yang R, Yu X, Zhang G, Zhou X.},
journal = {Gut Pathog},
year = {2022},
doi = {10.1186/s13099-022-00527-8},
pmid = {36564826}
}
@article{lin400216,
title = {Bacteroides fragilis participates in the therapeutic effect of methotrexate on arthritis through metabolite regulation.},
author = {Zhou B, Dong C, Zhao B, Lin K, Tian Y, Zhang R, Zhu L, Xu H, Yang L.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1015130},
pmid = {36590441}
}
@article{lin400314,
title = {Gut Microbiota Signature of Obese Adults Across Different Classifications.},
author = {Hu J, Guo P, Mao R, Ren Z, Wen J, Yang Q, Yan T, Yu J, Zhang T, Liu Y.},
journal = {Diabetes Metab Syndr Obes},
year = {2022},
doi = {10.2147/dmso.s387523},
pmid = {36601354}
}
@article{lin399831,
title = {Bacteroides-derived isovaleric acid enhances mucosal immunity by facilitating intestinal IgA response in broilers.},
author = {Wang X, Hu Y, Zhu X, Cai L, Farooq MZ, Yan X.},
journal = {J Anim Sci Biotechnol},
year = {2023},
doi = {10.1186/s40104-022-00807-y},
pmid = {36604758}
}
@article{lin399789,
title = {Interactions between perceived stress and microbial-host immune components: two demographically and geographically distinct pregnancy cohorts.},
author = {Penalver Bernabe B, Maki PM, Cunningham JL, Eisenlohr-Moul T, Tussing-Humphreys L, Carroll IM, Meltzer-Brody S, Gilbert JA, Kimmel M.},
journal = {Transl Psychiatry},
year = {2023},
doi = {10.1038/s41398-022-02276-3},
pmid = {36609477}
}
@article{lin400052,
title = {Metagenomic Analysis of Microbial Contamination in the U.S. Portion of the Tijuana River Watershed.},
author = {Allsing N, Kelley ST, Fox AN, Sant KE.},
journal = {Int J Environ Res Public Health},
year = {2022},
doi = {10.3390/ijerph20010600},
pmid = {36612923}
}
@article{lin81379,
title = {Polyphenols as Drivers of a Homeostatic Gut Microecology and Immuno-Metabolic Traits of Akkermansia muciniphila: From Mouse to Man.},
author = {Rodriguez-Daza MC, de Vos WM.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms24010045},
pmid = {36613488}
}
@article{lin400364,
title = {Gut microbiota contributes to the methionine metabolism in host.},
author = {Wu X, Han Z, Liu B, Yu D, Sun J, Ge L, Tang W, Liu S.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1065668},
pmid = {36620044}
}
@article{lin81286,
title = {Comparative analysis of prebiotic effects of four oligosaccharides using in vitro gut model: digestibility, microbiome, and metabolome changes.},
author = {Cheon S, Kim G, Bae JH, Lee DH, Seong H, Kim DH, Han JS, Lim SY, Han NS.},
journal = {FEMS Microbiol Ecol},
year = {2023},
doi = {10.1093/femsec/fiad002},
pmid = {36623850}
}
@article{lin400356,
title = {Metabolic disorder and intestinal microflora dysbiosis in chronic inflammatory demyelinating polyradiculoneuropathy.},
author = {Fu J, Shan J, Cui Y, Yan C, Wang Q, Han J, Cao G.},
journal = {Cell Biosci},
year = {2023},
doi = {10.1186/s13578-023-00956-1},
pmid = {36627678}
}
@article{lin399751,
title = {Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal microbial networks in pediatric patients undergoing HSCT.},
author = {Fabbrini M, D'Amico F, Leardini D, Muratore E, Barone M, Belotti T, Forchielli ML, Zama D, Pession A, Prete A, Brigidi P, Rampelli S, Candela M, Turroni S, Masetti R.},
journal = {Commun Biol},
year = {2023},
doi = {10.1038/s42003-023-04436-7},
pmid = {36639555}
}
@article{lin399917,
title = {Association of Subjective and Objective Measures of Sleep With Gut Microbiota Composition and Diversity in Older Men: The Osteoporotic Fractures in Men Study.},
author = {Estaki M, Langsetmo L, Shardell M, Mischel A, Jiang L, Zhong Y, Kaufmann C, Knight R, Stone K, Kado D.},
journal = {J Gerontol A Biol Sci Med Sci},
year = {2023},
doi = {10.1093/gerona/glad011},
pmid = {36655399}
}
@article{lin399999,
title = {Cow, yak, and camel milk diets differentially modulated the systemic immunity and fecal microbiota of rats.},
author = {Wen Y, He Q, Ding J, Wang H, Hou Q, Zheng Y, Li C, Ma Y, Zhang H, Kwok LY.},
journal = {Sci Bull (Beijing)},
year = {2017},
doi = {10.1016/j.scib.2017.01.027},
pmid = {36659284}
}
@article{lin399919,
title = {Evaluation of a Plant-Based Infant Formula Containing Almonds and Buckwheat on Gut Microbiota Composition, Intestine Morphology, Metabolic and Immune Markers in a Neonatal Piglet Model.},
author = {Gurung M, Rosa F, Yelvington B, Terry N, Read QD, Piccolo BD, Moody B, Tripp P, Pittman HE, Fay BL, Ross TJ, Sikes JD, Flowers JB, Fox R, LeRoith T, Talatala R, Bar-Yoseph F, Yeruva L.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15020383},
pmid = {36678256}
}
@article{lin400400,
title = {Protective Effect of Vegan Microbiota on Liver Steatosis Is Conveyed by Dietary Fiber: Implications for Fecal Microbiota Transfer Therapy.},
author = {Daskova N, Heczkova M, Modos I, Hradecky J, Hudcovic T, Kuzma M, Pelantova H, Buskova I, Sticova E, Funda D, Golias J, Drabonova B, Jarkovska J, Kralova M, Cibulkova I, Gojda J, Cahova M.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15020454},
pmid = {36678325}
}
@article{lin400208,
title = {Virome and metagenomic analysis reveal the distinct distribution of microbiota in human fetal gut during gestation.},
author = {Liu X, He G, Lan Y, Guo W, Liu X, Li J, Liu A, He M, Liu X, Fan Z, Zhang Y.},
journal = {Front Immunol},
year = {2022},
doi = {10.3389/fimmu.2022.1079294},
pmid = {36685560}
}
@article{lin400234,
title = {Composition of the gut microbiota in patients with inflammatory bowel disease in Saudi Arabia: A pilot study.},
author = {Al-Amrah H, Saadah OI, Mosli M, Annese V, Al-Hindi R, Edris S, Alshehri D, Alatawi H, Alatawy M, Bahieldin A.},
journal = {Saudi J Gastroenterol},
year = {2023},
doi = {10.4103/sjg.sjg_368_22},
pmid = {36695274}
}
@article{lin81269,
title = {Bacteroides uniformis and its preferred substrate, alpha-cyclodextrin, enhance endurance exercise performance in mice and human males.},
author = {Morita H, Kano C, Ishii C, Kagata N, Ishikawa T, Hirayama A, Uchiyama Y, Hara S, Nakamura T, Fukuda S.},
journal = {Sci Adv},
year = {2023},
doi = {10.1126/sciadv.add2120},
pmid = {36696509}
}
@article{lin400301,
title = {Influence of structural features and feruloylation on fermentability and ability to modulate gut microbiota of arabinoxylan in in vitro fermentation.},
author = {Li Z, Zhang H, He L, Hou Y, Che Y, Liu T, Xiong S, Zhang X, Luo S, Liu C, Chen T.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1113601},
pmid = {36713199}
}
@article{lin81274,
title = {The crosstalk between the gut microbiota and tumor immunity: Implications for cancer progression and treatment outcomes.},
author = {Wang M, Zhang L, Chang W, Zhang Y.},
journal = {Front Immunol},
year = {2022},
doi = {10.3389/fimmu.2022.1096551},
pmid = {36726985}
}
@article{lin399595,
title = {Structural characterization on a beta-agarase Aga86A_Wa from Wenyingzhuangia aestuarii reveals the prevalent methyl-galactose accommodation capacity of GH86 enzymes at subsite -1.},
author = {Zhang Y, Dong S, Chen G, Cao S, Shen J, Mei X, Cui Q, Feng Y, Chang Y, Wang Y, Xue C.},
journal = {Carbohydr Polym},
year = {2023},
doi = {10.1016/j.carbpol.2023.120594},
pmid = {36746585}
}
@article{lin400120,
title = {Colonic Transendoscopic Enteral Tubing Is a New Pathway to Microbial Therapy, Colonic Drainage, and Host-Microbiota Interaction Research.},
author = {Wang W, Lu G, Wu X, Wen Q, Zhang F.},
journal = {J Clin Med},
year = {2023},
doi = {10.3390/jcm12030780},
pmid = {36769429}
}
@article{lin400244,
title = {Dietary Impacts on Changes in Diversity and Abundance of the Murine Microbiome during Progression and Treatment of Cancer.},
author = {Paden H, Kurbatfinski N, Poelstra JW, Ormiston K, Orchard T, Ilic S.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15030724},
pmid = {36771430}
}
@article{lin81327,
title = {Microbial characterization based on multifractal analysis of metagenomes.},
author = {Xie XH, Huang YJ, Han GS, Yu ZG, Ma YL.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1117421},
pmid = {36779183}
}
@article{lin400188,
title = {The human gut microbiome of athletes: metagenomic and metabolic insights.},
author = {Fontana F, Longhi G, Tarracchini C, Mancabelli L, Lugli GA, Alessandri G, Turroni F, Milani C, Ventura M.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01470-9},
pmid = {36782241}
}
@article{lin399912,
title = {Virulence Factors of the Gut Microbiome Are Associated with BMI and Metabolic Blood Parameters in Children with Obesity.},
author = {Murga-Garrido SM, Ulloa-Perez EJ, Diaz-Benitez CE, Orbe-Orihuela YC, Cornejo-Granados F, Ochoa-Leyva A, Sanchez-Flores A, Cruz M, Castaneda-Marquez AC, Plett-Torres T, Burguete Garcia AI, Lagunas-Martinez A.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.03382-22},
pmid = {36786619}
}
@article{lin400092,
title = {The diagnostic and prognostic potential of gut bacteria in inflammatory bowel disease.},
author = {Wiredu Ocansey DK, Hang S, Yuan X, Qian H, Zhou M, Valerie Olovo C, Zhang X, Mao F.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2176118},
pmid = {36794838}
}
@article{lin400300,
title = {Bacteriophages playing nice: Lysogenic bacteriophage replication stable in the human gut microbiota.},
author = {Sutcliffe SG, Reyes A, Maurice CF.},
journal = {iScience},
year = {2023},
doi = {10.1016/j.isci.2023.106007},
pmid = {36798434}
}
@article{lin81338,
title = {Structure and function of microbial alpha-l-fucosidases: a mini review.},
author = {Wu H, Owen CD, Juge N.},
journal = {Essays Biochem},
year = {2023},
doi = {10.1042/ebc20220158},
pmid = {36805644}
}
@article{lin400141,
title = {The Role of Gut Microbiota in Various Neurological and Psychiatric Disorders-An Evidence Mapping Based on Quantified Evidence.},
author = {Zang Y, Lai X, Li C, Ding D, Wang Y, Zhu Y.},
journal = {Mediators Inflamm},
year = {2023},
doi = {10.1155/2023/5127157},
pmid = {36816743}
}
@article{lin399761,
title = {Gut microbial dysbiosis correlates with stroke severity markers in aged rats.},
author = {Hammond TC, Messmer S, Frank JA, Lukins D, Colwell R, Lin AL, Pennypacker KR.},
journal = {Front Stroke},
year = {2022},
doi = {10.3389/fstro.2022.1026066},
pmid = {36825211}
}
@article{lin400118,
title = {Gut Microbiota Analysis and In Silico Biomarker Detection of Children with Autism Spectrum Disorder across Cohorts.},
author = {Wang W, Fu P.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11020291},
pmid = {36838256}
}
@article{lin400102,
title = {Anti-Hyperuricemic Effect of Anserine Based on the Gut-Kidney Axis: Integrated Analysis of Metagenomics and Metabolomics.},
author = {Halimulati M, Wang R, Aihemaitijiang S, Huang X, Ye C, Zhang Z, Li L, Zhu W, Zhang Z, He L.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15040969},
pmid = {36839325}
}
@article{lin399809,
title = {Alterations in the Gut Microbiota in Pregnant Women with Pregestational Type 2 Diabetes Mellitus.},
author = {Ren Y, Hao L, Liu J, Wang P, Ding Q, Chen C, Song Y.},
journal = {mSystems},
year = {2023},
doi = {10.1128/msystems.01146-22},
pmid = {36853013}
}
@article{lin400384,
title = {Celastrol-regulated gut microbiota and bile acid metabolism alleviate hepatocellular carcinoma proliferation by regulating the interaction between FXR and RXRalpha in vivo and in vitro.},
author = {Zeng D, Zhang L, Luo Q.},
journal = {Front Pharmacol},
year = {2023},
doi = {10.3389/fphar.2023.1124240},
pmid = {36874033}
}
@article{lin400279,
title = {Interactions Between Antidepressants and Intestinal Microbiota.},
author = {Xu F, Xie Q, Kuang W, Dong Z.},
journal = {Neurotherapeutics},
year = {2023},
doi = {10.1007/s13311-023-01362-8},
pmid = {36881351}
}
@article{lin399992,
title = {Key Stratification of Microbiota Taxa and Metabolites in the Host Metabolic Health-Disease Balance.},
author = {Torres-Sanchez A, Ruiz-Rodriguez A, Ortiz P, Aguilera M.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms24054519},
pmid = {36901949}
}
@article{lin400269,
title = {Strain-Level Dynamics Reveal Regulatory Roles in Atopic Eczema by Gut Bacterial Phages.},
author = {Chu Y, Meng Q, Yu J, Zhang J, Chen J, Kang Y.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.04551-22},
pmid = {36951555}
}
@article{lin400121,
title = {Grain, Gluten, and Dietary Fiber Intake Influence Gut Microbial Diversity: Data from the Food and Microbiome Longitudinal Investigation.},
author = {Um CY, Peters BA, Choi HS, Oberstein P, Beggs DB, Usyk M, Wu F, Hayes RB, Gapstur SM, McCullough ML, Ahn J.},
journal = {Cancer Res Commun},
year = {2023},
doi = {10.1158/2767-9764.crc-22-0154},
pmid = {36968219}
}
@article{lin399850,
title = {Intestinal iron bio-accessibility changes by Lignin and the subsequent impact on cell metabolism and intestinal microbiome communities.},
author = {Horniblow RD, Pathak P, Eshrati M, Latunde-Dada GO, Tselepis C.},
journal = {Food Funct},
year = {2023},
doi = {10.1039/d2fo03807b},
pmid = {36970974}
}
@article{lin400283,
title = {Gut Microbiota Composition Can Predict Colonization by Multidrug-Resistant Bacteria in SARS-CoV-2 Patients in Intensive Care Unit: A Pilot Study.},
author = {Garcia-Garcia J, Diez-Echave P, Yuste ME, Chueca N, Garcia F, Garcia F, Cabeza-Barrera J, Fernandez-Varon E, Galvez J, Colmenero M, Rodriguez-Cabezas ME, Rodriguez-Nogales A, Moron R.},
journal = {Antibiotics (Basel)},
year = {2023},
doi = {10.3390/antibiotics12030498},
pmid = {36978365}
}
@article{lin400235,
title = {Association Studies on Gut and Lung Microbiomes in Patients with Lung Adenocarcinoma.},
author = {Guo Y, Yuan W, Lyu N, Pan Y, Cao X, Wang Y, Han Y, Zhu B.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11030546},
pmid = {36985120}
}
@article{lin400373,
title = {Microbiota Phenotype Promotes Anastomotic Leakage in a Model of Rats with Ischemic Colon Resection.},
author = {Zamorano D, Ivulic D, Viver T, Morales F, Lopez-Kostner F, Vidal RM.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11030680},
pmid = {36985253}
}
@article{lin400359,
title = {Agarolytic Pathway in the Newly Isolated Aquimarina sp. Bacterial Strain ERC-38 and Characterization of a Putative beta-agarase.},
author = {Kang JY, Song HY, Kim JM.},
journal = {Mar Biotechnol (NY)},
year = {2023},
doi = {10.1007/s10126-023-10206-7},
pmid = {37002465}
}
@article{lin400307,
title = {Bridging gut microbiota composition with extended-spectrum beta-lactamase Enterobacteriales faecal carriage in critically ill patients (microbe cohort study).},
author = {Prevel R, Enaud R, Orieux A, Camino A, Sioniac P, M'Zali F, Dubois V, Berger P, Boyer A, Delhaes L, Gruson D.},
journal = {Ann Intensive Care},
year = {2023},
doi = {10.1186/s13613-023-01121-0},
pmid = {37014580}
}
@article{lin81307,
title = {Bacteroides rhinocerotis sp. nov., isolated from the fresh feces of rhinoceros in Beijing Zoo.},
author = {Li X, Sun P, Gong L, Shi W, Xiang Z, Li M, Su L, Qin C.},
journal = {Arch Microbiol},
year = {2023},
doi = {10.1007/s00203-023-03513-z},
pmid = {37017778}
}
@article{lin400260,
title = {Intermittent fasting modulates the intestinal microbiota and improves obesity and host energy metabolism.},
author = {Hu X, Xia K, Dai M, Han X, Yuan P, Liu J, Liu S, Jia F, Chen J, Jiang F, Yu J, Yang H, Wang J, Xu X, Jin X, Kristiansen K, Xiao L, Chen W, Han M, Duan S.},
journal = {NPJ Biofilms Microbiomes},
year = {2023},
doi = {10.1038/s41522-023-00386-4},
pmid = {37029135}
}
@article{lin399795,
title = {The Role of Next-Generation Probiotics in Obesity and Obesity-Associated Disorders: Current Knowledge and Future Perspectives.},
author = {Vallianou NG, Kounatidis D, Tsilingiris D, Panagopoulos F, Christodoulatos GS, Evangelopoulos A, Karampela I, Dalamaga M.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms24076755},
pmid = {37047729}
}
@article{lin400360,
title = {HMOs Exert Marked Bifidogenic Effects on Children's Gut Microbiota Ex Vivo, Due to Age-Related Bifidobacterium Species Composition.},
author = {Bajic D, Wiens F, Wintergerst E, Deyaert S, Baudot A, Van den Abbeele P.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15071701},
pmid = {37049541}
}
@article{lin399973,
title = {Alteration of the gut microbiome and correlated metabolism in a rat model of long-term depression.},
author = {Li Y, Li J, Cheng R, Liu H, Zhao Y, Liu Y, Chen Y, Sun Z, Zhai Z, Wu M, Yan Y, Sun Y, Zhang Z.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1116277},
pmid = {37051300}
}
@article{lin400365,
title = {Evaluation of the contribution of gut microbiome dysbiosis to cardiac surgery-associated acute kidney injury by comparative metagenome analysis.},
author = {Li Y, Jiang X, Chen J, Hu Y, Bai Y, Xu W, He L, Wang Y, Chen C, Chen J.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1119959},
pmid = {37065117}
}
@article{lin400357,
title = {The gut microbiota contributes to the pathogenesis of anorexia nervosa in humans and mice.},
author = {Fan Y, Stoving RK, Berreira Ibraim S, Hyotylainen T, Thirion F, Arora T, Lyu L, Stankevic E, Hansen TH, Dechelotte P, Sinioja T, Ragnarsdottir O, Pons N, Galleron N, Quinquis B, Levenez F, Roume H, Falony G, Vieira-Silva S, Raes J, Clausen L, Telleus GK, Backhed F, Oresic M, Ehrlich SD, Pedersen O.},
journal = {Nat Microbiol},
year = {2023},
doi = {10.1038/s41564-023-01355-5},
pmid = {37069399}
}
@article{lin399847,
title = {The convergent application of metabolites from Avena sativa and gut microbiota to ameliorate non-alcoholic fatty liver disease: a network pharmacology study.},
author = {Oh KK, Yoon SJ, Lee SB, Lee SY, Gupta H, Ganesan R, Sharma SP, Won SM, Jeong JJ, Kim DJ, Suk KT.},
journal = {J Transl Med},
year = {2023},
doi = {10.1186/s12967-023-04122-6},
pmid = {37069607}
}
@article{lin400250,
title = {A comparative analysis of lipoprotein transport proteins: LolA and LolB from Vibrio cholerae and LolA from Porphyromonas gingivalis.},
author = {Jaiman D, Nagampalli R, Persson K.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-33705-y},
pmid = {37095149}
}
@article{lin399842,
title = {Positive mood-related gut microbiota in a long-term closed environment: a multiomics study based on the "Lunar Palace 365" experiment.},
author = {Hao Z, Meng C, Li L, Feng S, Zhu Y, Yang J, Han L, Sun L, Lv W, Figeys D, Liu H.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01506-0},
pmid = {37095530}
}
@article{lin400348,
title = {Inulin diet uncovers complex diet-microbiota-immune cell interactions remodeling the gut epithelium.},
author = {Correa RO, Castro PR, Fachi JL, Nirello VD, El-Sahhar S, Imada S, Pereira GV, Pral LP, Araujo NVP, Fernandes MF, Matheus VA, de Souza Felipe J, Dos Santos Pereira Gomes AB, de Oliveira S, de Rezende Rodovalho V, de Oliveira SRM, de Assis HC, Oliveira SC, Dos Santos Martins F, Martens E, Colonna M, Varga-Weisz P, Vinolo MAR.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01520-2},
pmid = {37101209}
}
@article{lin399582,
title = {Effects of partially hydrolyzed guar gums of different molecular weights on a human intestinal in vitro fermentation model.},
author = {Sasaki D, Sasaki K, Abe A, Ozeki M, Kondo A.},
journal = {J Biosci Bioeng},
year = {2023},
doi = {10.1016/j.jbiosc.2023.04.002},
pmid = {37105857}
}
@article{lin400095,
title = {The Effect of a Planetary Health Diet on the Human Gut Microbiome: A Descriptive Analysis.},
author = {Rehner J, Schmartz GP, Kramer T, Keller V, Keller A, Becker SL.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15081924},
pmid = {37111144}
}
@article{lin400204,
title = {Changes of gut microbiota reflect the severity of major depressive disorder: a cross sectional study.},
author = {Hu X, Li Y, Wu J, Zhang H, Huang Y, Tan X, Wen L, Zhou X, Xie P, Olasunkanmi OI, Zhou J, Sun Z, Liu M, Zhang G, Yang J, Zheng P, Xie P.},
journal = {Transl Psychiatry},
year = {2023},
doi = {10.1038/s41398-023-02436-z},
pmid = {37117202}
}
@article{lin400079,
title = {Association of gut microbiome and metabolites with onset and treatment response of patients with pemphigus vulgaris.},
author = {Wang Y, Xia X, Zhou X, Zhan T, Dai Q, Zhang Y, Zhang W, Shu Y, Li W, Xu H.},
journal = {Front Immunol},
year = {2023},
doi = {10.3389/fimmu.2023.1114586},
pmid = {37122759}
}
@article{lin400144,
title = {Association of distinct microbial signatures with premalignant colorectal adenomas.},
author = {Lee JWJ, Plichta DR, Asher S, Delsignore M, Jeong T, McGoldrick J, Staller K, Khalili H, Xavier RJ, Chung DC.},
journal = {Cell Host Microbe},
year = {2023},
doi = {10.1016/j.chom.2023.04.007},
pmid = {37130517}
}
@article{lin400065,
title = {Mapping human pathogens in wastewater using a metatranscriptomic approach.},
author = {Carneiro J, Pascoal F, Semedo M, Pratas D, Tomasino MP, Rego A, Carvalho MF, Mucha AP, Magalhaes C.},
journal = {Environ Res},
year = {2023},
doi = {10.1016/j.envres.2023.116040},
pmid = {37150387}
}
@article{lin400146,
title = {Intestinal microbiome characterization of adult Brazilian men with psoriasis compared to omnivore and vegetarian controls.},
author = {Polo TCF, Lai MRR, Miot LDB, Bento GFC, Silva MGD, Marques SA, Miot HA.},
journal = {An Bras Dermatol},
year = {2023},
doi = {10.1016/j.abd.2022.08.008},
pmid = {37156688}
}
@article{lin400296,
title = {Two-sample Mendelian randomization analysis investigates causal associations between gut microbiota and attention deficit hyperactivity disorder.},
author = {Wang L, Xie Z, Xie Z, Li G, Li G, Liang J.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1144851},
pmid = {37168108}
}
@article{lin399782,
title = {Comprehensive insights from composition to functional microbe-based biodiversity of the infant human gut microbiota.},
author = {Lugli GA, Mancabelli L, Milani C, Fontana F, Tarracchini C, Alessandri G, van Sinderen D, Turroni F, Ventura M.},
journal = {NPJ Biofilms Microbiomes},
year = {2023},
doi = {10.1038/s41522-023-00392-6},
pmid = {37169786}
}
@article{lin400004,
title = {Bridging preclinical and clinical gut microbiota research using the ex vivo SIFR® technology.},
author = {Van den Abbeele P, Deyaert S, Thabuis C, Perreau C, Bajic D, Wintergerst E, Joossens M, Firrman J, Walsh D, Baudot A.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1131662},
pmid = {37187538}
}
@article{lin399893,
title = {Alterations in the Gut Microbiome and Metabolisms in Pregnancies with Fetal Growth Restriction.},
author = {Tao Z, Chen Y, He F, Tang J, Zhan L, Hu H, Ding Z, Ruan S, Chen Y, Chen B, Wang Y, Guo X, Xie L, Zhong M, Huang Q.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.00076-23},
pmid = {37199635}
}
@article{lin400337,
title = {Investigating volatile compounds in the Bacteroides secretome.},
author = {Shagaleeva OY, Kashatnikova DA, Kardonsky DA, Konanov DN, Efimov BA, Bagrov DV, Evtushenko EG, Chaplin AV, Silantiev AS, Filatova JV, Kolesnikova IV, Vanyushkina AA, Stimpson J, Zakharzhevskaya NB.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1164877},
pmid = {37206326}
}
@article{lin81319,
title = {Phylogenetic diversity of core rumen microbiota as described by cryo-ET.},
author = {Wimmer BH, Morais S, Zalk R, Mizrahi I, Medalia O.},
journal = {Microlife},
year = {2023},
doi = {10.1093/femsml/uqad010},
pmid = {37223726}
}
@article{lin400206,
title = {Bacterial pathogens in pediatric appendicitis: a comprehensive retrospective study.},
author = {Felber J, Gross B, Rahrisch A, Waltersbacher E, Trips E, Schrottner P, Fitze G, Schultz J.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1027769},
pmid = {37228669}
}
@article{lin399674,
title = {Zearalenone-14-glucoside specifically promotes dysplasia of Gut-Associated Lymphoid Tissue: A natural product for constructing intestinal nodular lymphatic hyperplasia model.},
author = {Ruan H, Wang Y, Zhang J, Huang Y, Yang Y, Wu C, Guo M, Luo J, Yang M.},
journal = {J Adv Res},
year = {2023},
doi = {10.1016/j.jare.2023.05.006},
pmid = {37230382}
}
@article{lin399819,
title = {Understanding the ADHD-Gut Axis by Metabolic Network Analysis.},
author = {Tas E, Ulgen KO.},
journal = {Metabolites},
year = {2023},
doi = {10.3390/metabo13050592},
pmid = {37233633}
}
@article{lin400138,
title = {The Interplay between Gut Microbiota and Oral Medications and Its Impact on Advancing Precision Medicine.},
author = {Mousa S, Sarfraz M, Mousa WK.},
journal = {Metabolites},
year = {2023},
doi = {10.3390/metabo13050674},
pmid = {37233715}
}
@article{lin400027,
title = {Integration analysis of tumor metagenome and peripheral immunity data of diffuse large-B cell lymphoma.},
author = {Zhang Y, Han S, Xiao X, Zheng L, Chen Y, Zhang Z, Gao X, Zhou S, Yu K, Huang L, Fu J, Hong Y, Jiang J, Qian W, Yang H, Shen J.},
journal = {Front Immunol},
year = {2023},
doi = {10.3389/fimmu.2023.1146861},
pmid = {37234150}
}
@article{lin399989,
title = {Exploring the Association between Citrus Nutraceutical Eriocitrin and Metformin for Improving Pre-Diabetes in a Dynamic Microbiome Model.},
author = {Cesar T, Salgaco MK, Mesa V, Sartoratto A, Sivieri K.},
journal = {Pharmaceuticals (Basel)},
year = {2023},
doi = {10.3390/ph16050650},
pmid = {37242433}
}
@article{lin400140,
title = {Insight into gut dysbiosis of patients with inflammatory bowel disease and ischemic colitis.},
author = {Dahal RH, Kim S, Kim YK, Kim ES, Kim J.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1174832},
pmid = {37250025}
}
@article{lin399771,
title = {Altered gut microbiome profile in patients with knee osteoarthritis.},
author = {Wang X, Wu Y, Liu Y, Chen F, Chen S, Zhang F, Li S, Wang C, Gong Y, Huang R, Hu M, Ning Y, Zhao H, Guo X.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1153424},
pmid = {37250055}
}
@article{lin81320,
title = {Fungal beta-glucan-facilitated cross-feeding activities between Bacteroides and Bifidobacterium species.},
author = {Fernandez-Julia P, Black GW, Cheung W, Van Sinderen D, Munoz-Munoz J.},
journal = {Commun Biol},
year = {2023},
doi = {10.1038/s42003-023-04970-4},
pmid = {37253778}
}
@article{lin400390,
title = {Capturing the dynamics of microbial interactions through individual-specific networks.},
author = {Yousefi B, Melograna F, Galazzo G, van Best N, Mommers M, Penders J, Schwikowski B, Van Steen K.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1170391},
pmid = {37256048}
}
@article{lin400037,
title = {Integrated microbiome and metabolome analysis reveals the interaction between intestinal flora and serum metabolites as potential biomarkers in hepatocellular carcinoma patients.},
author = {Li X, Yi Y, Wu T, Chen N, Gu X, Xiang L, Jiang Z, Li J, Jin H.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1170748},
pmid = {37260707}
}
@article{lin399752,
title = {Relationships of the gut microbiome with cognitive development among healthy school-age children.},
author = {Lapidot Y, Maya M, Reshef L, Cohen D, Ornoy A, Gophna U, Muhsen K.},
journal = {Front Pediatr},
year = {2023},
doi = {10.3389/fped.2023.1198792},
pmid = {37274812}
}
@article{lin399773,
title = {Landscapes of gut microbiome and bile acid signatures and their interaction in HBV-associated acute-on-chronic liver failure.},
author = {Bao Z, Wei R, Zheng X, Zhang T, Bi Y, Shen S, Zou P, Zhang J, Yan H, Li MD, Yang Z, Gao H.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1185993},
pmid = {37275140}
}
@article{lin81358,
title = {Maternal diet and gut microbiome composition modulate early-life immune development.},
author = {Grant ET, Boudaud M, Muller A, Muller A, Macpherson AJ, Desai MS.},
journal = {EMBO Mol Med},
year = {2023},
doi = {10.15252/emmm.202217241},
pmid = {37278126}
}
@article{lin400228,
title = {Alteration of the fecal microbiome in patients with cholecystectomy: potential relationship with postcholecystectomy diarrhea - before and after study.},
author = {Noh CK, Jung W, Yang MJ, Kim WH, Hwang JC.},
journal = {Int J Surg},
year = {2023},
doi = {10.1097/js9.0000000000000518},
pmid = {37288587}
}
@article{lin399676,
title = {Fecal Microbiota Composition, Their Interactions, and Metagenome Function in US Adults with Type 2 Diabetes According to Enterotypes.},
author = {Park S, Zhang T, Kang S.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms24119533},
pmid = {37298483}
}
@article{lin81294,
title = {SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations.},
author = {Bustion AE, Nayak RR, Agrawal A, Turnbaugh PJ, Pollard KS.},
journal = {Elife},
year = {2023},
doi = {10.7554/elife.82401},
pmid = {37306300}
}
@article{lin399814,
title = {Prematurely delivering mothers show reductions of lachnospiraceae in their gut microbiomes.},
author = {Yang R, Li X, Ying Z, Zhao Z, Wang Y, Wang Q, Shen B, Peng W.},
journal = {BMC Microbiol},
year = {2023},
doi = {10.1186/s12866-023-02892-z},
pmid = {37322412}
}
@article{lin81371,
title = {Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome.},
author = {Wang M, Osborn LJ, Jain S, Meng X, Weakley A, Yan J, Massey WJ, Varadharajan V, Horak A, Banerjee R, Allende DS, Chan ER, Hajjar AM, Wang Z, Dimas A, Zhao A, Nagashima K, Cheng AG, Higginbottom S, Hazen SL, Brown JM, Fischbach MA.},
journal = {Cell},
year = {2023},
doi = {10.1016/j.cell.2023.05.037},
pmid = {37352836}
}
@article{lin399654,
title = {Differences in tissue-associated bacteria between metastatic and non-metastatic colorectal cancer.},
author = {Zhou P, Dai Z, Xie Y, Li T, Xu Z, Huang Y, Sun D, Zhou Y.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1133607},
pmid = {37362927}
}
@article{lin399664,
title = {Shared and Distinct Gut Microbial Profiles in Saudi Women with Metabolically Healthy and Unhealthy Obesity.},
author = {Aljuraiban GS, Alfhili MA, Aldhwayan MM, Aljazairy EA, Al-Musharaf S.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11061430},
pmid = {37374933}
}
@article{lin400316,
title = {The Effect of Human Milk Oligosaccharides and Bifidobacterium longum subspecies infantis Bi-26 on Simulated Infant Gut Microbiome and Metabolites.},
author = {Salli K, Hirvonen J, Anglenius H, Hibberd AA, Ahonen I, Saarinen MT, Maukonen J, Ouwehand AC.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11061553},
pmid = {37375055}
}
@article{lin400372,
title = {A systematic review on the impact of gastrointestinal microbiota composition and function on cognition in healthy infants and children.},
author = {McMath AL, Aguilar-Lopez M, Cannavale CN, Khan NA, Donovan SM.},
journal = {Front Neurosci},
year = {2023},
doi = {10.3389/fnins.2023.1171970},
pmid = {37389363}
}
@article{lin400113,
title = {Vascular Graft Infection After Aneurysm Repair: A Population-Based Study.},
author = {Tabaja H, Baddour LM, Chesdachai S, DeMartino RR, Lahr BD, DeSimone DC.},
journal = {Mayo Clin Proc},
year = {2023},
doi = {10.1016/j.mayocp.2023.02.027},
pmid = {37389517}
}
@article{lin399966,
title = {Probiotic lactic acid bacteria alleviate pediatric IBD and remodel gut microbiota by modulating macrophage polarization and suppressing epithelial apoptosis.},
author = {Hua H, Pan C, Chen X, Jing M, Xie J, Gao Y, Huang J, Chen X, Gao Y, Xu C, Li P.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1168924},
pmid = {37396394}
}
@article{lin400033,
title = {Hyperglycemia is associated with duodenal dysbiosis and altered duodenal microenvironment.},
author = {Darra A, Singh V, Jena A, Popli P, Nada R, Gupta P, Bhadada SK, Singh AK, Sharma V, Bhattacharya A, Agrawal A, Dutta U.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-37720-x},
pmid = {37419941}
}
@article{lin400254,
title = {Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized in vitro community compositions.},
author = {Gnanasekaran T, Sarathi A, Fang Q, Azarm A, Assis Geraldo J, Nigro E, Arumugam M.},
journal = {mSystems},
year = {2023},
doi = {10.1128/msystems.01249-22},
pmid = {37427928}
}
@article{lin400064,
title = {16S rRNA gene sequencing reveals the correlation between the gut microbiota and the susceptibility to pathological scars.},
author = {Li M, Li M, Dai Y, Li D, Yu H, Liu J, Gao H, Zhong Y, Huang M, Lin J, Xie Y, Guo Z, Chen X.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1215884},
pmid = {37434704}
}
@article{lin400303,
title = {Enhancing therapeutic effects of murine cancer vaccine by reshaping gut microbiota with Lactobacillus rhamnosus GG and jujube powder.},
author = {Jing N, Wang L, Zhuang H, Jiang G, Liu Z.},
journal = {Front Immunol},
year = {2023},
doi = {10.3389/fimmu.2023.1195075},
pmid = {37435064}
}
@article{lin400213,
title = {Effects of Bacillus licheniformis on the Growth Performance, Antioxidant Capacity, Ileal Morphology, Intestinal Short Chain Fatty Acids, and Colonic Microflora in Piglets Challenged with Lipopolysaccharide.},
author = {Cao G, Yang S, Wang H, Zhang R, Wu Y, Liu J, Qiu K, Dong Y, Yue M.},
journal = {Animals (Basel)},
year = {2023},
doi = {10.3390/ani13132172},
pmid = {37443970}
}
@article{lin399567,
title = {In vitro Effects of Cellulose Acetate on Fermentation Profiles, the Microbiome, and Gamma-aminobutyric Acid Production in Human Stool Cultures.},
author = {Yamada H, Miura H, Suzuki Y, Koike S, Shimamoto S, Kobayashi Y.},
journal = {Curr Microbiol},
year = {2023},
doi = {10.1007/s00284-023-03383-0},
pmid = {37450067}
}
@article{lin400159,
title = {Gut dysbiosis in Thai intrahepatic cholangiocarcinoma and hepatocellular carcinoma.},
author = {Pomyen Y, Chaisaingmongkol J, Rabibhadana S, Pupacdi B, Sripan D, Chornkrathok C, Budhu A, Budhisawasdi V, Lertprasertsuke N, Chotirosniramit A, Pairojkul C, Auewarakul CU, Ungtrakul T, Sricharunrat T, Phornphutkul K, Sangrajang S, Loffredo CA, Harris CC, Mahidol C, Wang XW, Ruchirawat M, TIGER-LC Consortium.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-38307-2},
pmid = {37452065}
}
@article{lin399574,
title = {Divergent metabolism of two lychee (Litchi chinensis Sonn.) pulp flavonols and their modulatory effects on gut microbiota: Discovery of hydroxyethylation in vitro colonic fermentation.},
author = {Huang G, Zeng Q, Dong L, Zhang R, Zhang M, Huang F, Su D.},
journal = {Food Chem},
year = {2023},
doi = {10.1016/j.foodchem.2023.136875},
pmid = {37454621}
}
@article{lin400305,
title = {Pea hull fiber supplementation does not modulate uremic metabolites in adults receiving hemodialysis: a randomized, double-blind, controlled trial.},
author = {Fatani AMN, Suh JH, Auger J, Alabasi KM, Wang Y, Segal MS, Dahl WJ.},
journal = {Front Nutr},
year = {2023},
doi = {10.3389/fnut.2023.1179295},
pmid = {37457968}
}
@article{lin400101,
title = {Integrated analysis of the microbiome and transcriptome in stomach adenocarcinoma.},
author = {Zhou D, Xiong S, Xiong J, Deng X, Long Q, Li Y.},
journal = {Open Life Sci},
year = {2023},
doi = {10.1515/biol-2022-0528},
pmid = {37465100}
}
@article{lin400238,
title = {A microbial causal mediation analytic tool for health disparity and applications in body mass index.},
author = {Wang C, Ahn J, Tarpey T, Yi SS, Hayes RB, Li H.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01608-9},
pmid = {37496080}
}
@article{lin81268,
title = {Development of culture methods capable of culturing a wide range of predominant species of intestinal bacteria.},
author = {Hirano R, Nishita I, Nakai R, Bito A, Sasabe R, Kurihara S.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1056866},
pmid = {37520440}
}
@article{lin400090,
title = {Diversification and deleterious role of microbiome in gastric cancer.},
author = {Chattopadhyay I, Gundamaraju R, Rajeev A.},
journal = {Cancer Rep (Hoboken)},
year = {2023},
doi = {10.1002/cnr2.1878},
pmid = {37530125}
}
@article{lin400374,
title = {Lactiplantibacillus plantarum, lactiplantibacillus pentosus and inulin meal inclusion boost the metagenomic function of broiler chickens.},
author = {Ferrocino I, Biasato I, Dabbou S, Colombino E, Rantsiou K, Squara S, Gariglio M, Capucchio MT, Gasco L, Cordero CE, Liberto E, Schiavone A, Cocolin L.},
journal = {Anim Microbiome},
year = {2023},
doi = {10.1186/s42523-023-00257-5},
pmid = {37537673}
}
@article{lin400256,
title = {Understanding the Role of the Gut Microbiome in Diabetes and Therapeutics Targeting Leaky Gut: A Systematic Review.},
author = {Sadagopan A, Mahmoud A, Begg M, Tarhuni M, Fotso M, Gonzalez NA, Sanivarapu RR, Osman U, Latha Kumar A, Mohammed L.},
journal = {Cureus},
year = {2023},
doi = {10.7759/cureus.41559},
pmid = {37554593}
}
@article{lin400096,
title = {Abundance and prevalence of ESBL coding genes in patients undergoing first line eradication therapy for Helicobacter pylori.},
author = {Gudra D, Silamikelis I, Pjalkovskis J, Danenberga I, Pupola D, Skenders G, Ustinova M, Megnis K, Leja M, Vangravs R, Fridmanis D.},
journal = {PLoS One},
year = {2023},
doi = {10.1371/journal.pone.0289879},
pmid = {37561723}
}
@article{lin399851,
title = {Maast: genotyping thousands of microbial strains efficiently.},
author = {Shi ZJ, Nayfach S, Pollard KS.},
journal = {Genome Biol},
year = {2023},
doi = {10.1186/s13059-023-03030-8},
pmid = {37563669}
}
@article{lin400377,
title = {Compliance with Nutritional Recommendations and Gut Microbiota Profile in Galician Overweight/Obese and Normal-Weight Individuals.},
author = {Sinisterra-Loaiza L, Alonso-Lovera P, Cardelle-Cobas A, Miranda JM, Vazquez BI, Cepeda A.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15153418},
pmid = {37571355}
}
@article{lin400237,
title = {Orally administrated Lactobacillus gasseri TM13 and Lactobacillus crispatus LG55 can restore the vaginal health of patients recovering from bacterial vaginosis.},
author = {Qi F, Fan S, Fang C, Ge L, Lyu J, Huang Z, Zhao S, Zou Y, Huang L, Liu X, Liang Y, Zhang Y, Zhong Y, Zhang H, Xiao L, Zhang X.},
journal = {Front Immunol},
year = {2023},
doi = {10.3389/fimmu.2023.1125239},
pmid = {37575226}
}
@article{lin399870,
title = {Bacteroides uniformis-induced perturbations in colonic microbiota and bile acid levels inhibit TH17 differentiation and ameliorate colitis developments.},
author = {Yan Y, Lei Y, Qu Y, Fan Z, Zhang T, Xu Y, Du Q, Brugger D, Chen Y, Zhang K, Zhang E.},
journal = {NPJ Biofilms Microbiomes},
year = {2023},
doi = {10.1038/s41522-023-00420-5},
pmid = {37580334}
}
@article{lin399770,
title = {Association of the human gut microbiota with vascular stiffness.},
author = {Cuadrat RRC, Goris T, Birukov A, Eichelmann F, Andrade BGN, Bang C, Franke A, Wittenbecher C, Schulze MB.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-40178-6},
pmid = {37587126}
}
@article{lin399835,
title = {Crosstalk between Helicobacter pylori and gastrointestinal microbiota in various gastroduodenal diseases-A systematic review.},
author = {Sharma P, Phatak SM, Warikoo P, Mathur A, Mahant S, Das K, Das R.},
journal = {3 Biotech},
year = {2023},
doi = {10.1007/s13205-023-03734-5},
pmid = {37588796}
}
@article{lin400295,
title = {Attention Deficit Hyperactivity Disorder (ADHD) and the gut microbiome: An ecological perspective.},
author = {Cickovski T, Mathee K, Aguirre G, Tatke G, Hermida A, Narasimhan G, Stollstorff M.},
journal = {PLoS One},
year = {2023},
doi = {10.1371/journal.pone.0273890},
pmid = {37594987}
}
@article{lin399646,
title = {Types of fiber and gut microbiota composition and diversity among arab females.},
author = {Aljuraiban GS, Algabsani SS, Sabico S, AlShammari S, Aljazairy EA, Al-Musharaf S.},
journal = {Saudi J Biol Sci},
year = {2023},
doi = {10.1016/j.sjbs.2023.103767},
pmid = {37609544}
}
@article{lin81289,
title = {How Do Prebiotics Affect Human Intestinal Bacteria?-Assessment of Bacterial Growth with Inulin and XOS In Vitro.},
author = {Schropp N, Stanislas V, Michels KB, Thriene K.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms241612796},
pmid = {37628977}
}
@article{lin400006,
title = {Multi-omics analysis of fecal samples in colorectal cancer Egyptians patients: a pilot study.},
author = {Khattab RH, Abo-Hammam RH, Salah M, Hanora AM, Shabayek S, Zakeer S.},
journal = {BMC Microbiol},
year = {2023},
doi = {10.1186/s12866-023-02991-x},
pmid = {37644393}
}
@article{lin399624,
title = {Intestinal microbiota links to allograft stability after lung transplantation: a prospective cohort study.},
author = {Wu J, Li C, Gao P, Zhang C, Zhang P, Zhang L, Dai C, Zhang K, Shi B, Liu M, Zheng J, Pan B, Chen Z, Zhang C, Liao W, Pan W, Fang W, Chen C.},
journal = {Signal Transduct Target Ther},
year = {2023},
doi = {10.1038/s41392-023-01515-3},
pmid = {37652953}
}
@article{lin400361,
title = {Helicobacter pylori infection altered gastric microbiota in patients with chronic gastritis.},
author = {Hua Z, Xu L, Zhu J, Xiao L, Lu B, Wu J, Wu Z, Zhou Q, Zhang J.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1221433},
pmid = {37662018}
}
@article{lin400221,
title = {Gut commensal Kineothrix alysoides mitigates liver dysfunction by restoring lipid metabolism and gut microbial balance.},
author = {Choi KJ, Yoon MY, Kim JE, Yoon SS.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-41160-y},
pmid = {37674003}
}
@article{lin400125,
title = {Microbial signature of plaque and gut in acute coronary syndrome.},
author = {Pisano E, Bugli F, Severino A, Pedicino D, Paroni Sterbini F, Martini C, De Maio F, Vinci R, Sacconi A, Canonico F, D'Aiello A, Bonanni A, Proto L, Ciampi P, Ponzo M, Grimaldi MC, Urbani A, Primiano A, Gervasoni J, Montone R, Crea F, Sanguinetti M, Liuzzo G.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-41867-y},
pmid = {37679428}
}
@article{lin399983,
title = {Mendelian randomization analysis revealed a gut microbiota-mammary axis in breast cancer.},
author = {Zhang S, Zhang W, Ren H, Xue R, Wang Z, Wang Z, Lv Q.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1193725},
pmid = {37680534}
}
@article{lin400008,
title = {Gut Microbiota Alterations and Their Functional Differences in Depression According to Enterotypes in Asian Individuals.},
author = {Park S, Li C, Wu X, Zhang T.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms241713329},
pmid = {37686135}
}
@article{lin399691,
title = {Gut microbiome profile of Chinese hypertension patients with and without type 2 diabetes mellitus.},
author = {Ding H, Xu Y, Cheng Y, Zhou H, Dong S, Wu J, Lv J, Hu X, Tang O.},
journal = {BMC Microbiol},
year = {2023},
doi = {10.1186/s12866-023-02967-x},
pmid = {37689641}
}
@article{lin399968,
title = {Composition and functional profiles of gut microbiota reflect the treatment stage, severity, and etiology of acute pancreatitis.},
author = {Wang Z, Guo M, Li J, Jiang C, Yang S, Zheng S, Li M, Ai X, Xu X, Zhang W, He X, Wang Y, Chen Y.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.00829-23},
pmid = {37698429}
}
@article{lin399745,
title = {Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes.},
author = {Lim JJ, Diener C, Wilson J, Valenzuela JJ, Baliga NS, Gibbons SM.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-41424-1},
pmid = {37709733}
}
@article{lin400350,
title = {An extended catalog of integrated prophages in the infant and adult fecal microbiome shows high prevalence of lysogeny.},
author = {Dikareva E, Matharu D, Lahtinen E, Kolho KL, De Vos WM, Salonen A, Ponsero AJ.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1254535},
pmid = {37731926}
}
@article{lin399717,
title = {Gut microbiome association with brain imaging markers, APOE genotype, calcium and vegetable intakes, and obesity in healthy aging adults.},
author = {Hammond TC, Green SJ, Jacobs Y, Chlipala GE, Xing X, Heil S, Chen A, Aware C, Flemister A, Stromberg A, Balchandani P, Lin AL.},
journal = {Front Aging Neurosci},
year = {2023},
doi = {10.3389/fnagi.2023.1227203},
pmid = {37736325}
}
@article{lin399978,
title = {Plant-based dietary index in relation to gut microbiota in Arab women.},
author = {Aljuraiban GS, Aljazairy EA, Alsahli AS, Sabico S, Al-Musharaf S.},
journal = {Medicine (Baltimore)},
year = {2023},
doi = {10.1097/md.0000000000035262},
pmid = {37747018}
}
@article{lin400336,
title = {Investigating the cecal microbiota of broilers raised in extensive and intensive production systems.},
author = {Marcolla CS, Ju T, Lantz HL, Willing BP.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.02352-23},
pmid = {37754552}
}
@article{lin399614,
title = {Uncovering Predictive Factors and Interventions for Restoring Microecological Diversity after Antibiotic Disturbance.},
author = {Chen J, Zhu J, Lu W, Wang H, Pan M, Tian P, Zhao J, Zhang H, Chen W.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15183925},
pmid = {37764709}
}
@article{lin400205,
title = {Characterisation of Indian gut microbiome for B-vitamin production and its comparison with Chinese cohort.},
author = {Chandel N, Somvanshi PR, Thakur V.},
journal = {Br J Nutr},
year = {2024},
doi = {10.1017/s0007114523002179},
pmid = {37781761}
}
@article{lin400131,
title = {Microbial ecology between Clostridioides difficile and gut microbiota.},
author = {Kamiya S.},
journal = {Biosci Microbiota Food Health},
year = {2023},
doi = {10.12938/bmfh.2023-033},
pmid = {37791342}
}
@article{lin81312,
title = {Gut microbiota aggravates neutrophil extracellular traps-induced pancreatic injury in hypertriglyceridemic pancreatitis.},
author = {Li G, Liu L, Lu T, Sui Y, Zhang C, Wang Y, Zhang T, Xie Y, Xiao P, Zhao Z, Cheng C, Hu J, Chen H, Xue D, Chen H, Wang G, Kong R, Tan H, Bai X, Li Z, McAllister F, Li L, Sun B.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-41950-y},
pmid = {37794047}
}
@article{lin399981,
title = {Effects of systemic Bifidobacterium longum and Lactobacillus rhamnosus probiotics on the ligature-induced periodontitis in rat.},
author = {Chen YW, Lee ML, Chiang CY, Fu E.},
journal = {J Dent Sci},
year = {2023},
doi = {10.1016/j.jds.2023.04.013},
pmid = {37799895}
}
@article{lin399918,
title = {Targeting IL-23 for the interception of obesity-associated colorectal cancer.},
author = {Madka V, Chiliveru S, Panneerselvam J, Pathuri G, Zhang Y, Stratton N, Kumar N, Sanghera DK, Rao CV.},
journal = {Neoplasia},
year = {2023},
doi = {10.1016/j.neo.2023.100939},
pmid = {37813000}
}
@article{lin399559,
title = {A combined molecular approach utilizing microbial DNA and microRNAs in a qPCR multiplex for the classification of five forensically relevant body fluids.},
author = {Lewis CA, Seashols-Williams SJ.},
journal = {J Forensic Sci},
year = {2024},
doi = {10.1111/1556-4029.15400},
pmid = {37818748}
}
@article{lin400190,
title = {Functional diversification despite structural congruence in the HipBST toxin-antitoxin system of Legionella pneumophila.},
author = {Lin JD, Stogios PJ, Abe KT, Wang A, MacPherson J, Skarina T, Gingras A-C, Savchenko A, Ensminger AW.},
journal = {mBio},
year = {2023},
doi = {10.1128/mbio.01510-23},
pmid = {37819088}
}
@article{lin400243,
title = {Creation of a non-Western humanized gnotobiotic mouse model through the transplantation of rural African fecal microbiota.},
author = {Van Den Ham KM, Little MR, Bednarski OJ, Fusco EM, Mandal RK, Mitra R, Li S, Doumbo S, Doumtabe D, Kayentao K, Ongoiba A, Traore B, Crompton PD, Schmidt NW.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.01554-23},
pmid = {37819130}
}
@article{lin400302,
title = {[Clinical analysis of 11 cases of otogenic intracranial complications treated by multidisciplinary collaboration].},
author = {Song Z, Liu W, Wang N, Fu Y, Li Z, Wang C, Sun Y.},
journal = {Lin Chuang Er Bi Yan Hou Tou Jing Wai Ke Za Zhi},
year = {2023},
doi = {10.13201/j.issn.2096-7993.2023.10.011},
pmid = {37828887}
}
@article{lin81345,
title = {Gut Bacteroides act in a microbial consortium to cause susceptibility to severe malaria.},
author = {Mandal RK, Mandal A, Denny JE, Namazii R, John CC, Schmidt NW.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-42235-0},
pmid = {37833304}
}
@article{lin81313,
title = {Discovery of Bacteroides uniformis F18-22 as a Safe and Novel Probiotic Bacterium for the Treatment of Ulcerative Colitis from the Healthy Human Colon.},
author = {Dai W, Zhang J, Chen L, Yu J, Zhang J, Yin H, Shang Q, Yu G.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms241914669},
pmid = {37834117}
}
@article{lin399810,
title = {In Vitro Fermentation of Polysaccharide from Edible Alga Enteromorpha clathrata by the Gut Microbiota of Patients with Ulcerative Colitis.},
author = {Ma M, Quan M, Zhang J, Zhang A, Gao P, Shang Q, Yu G.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15194122},
pmid = {37836407}
}
@article{lin400335,
title = {Weight Loss Promotion in Individuals with Obesity through Gut Microbiota Alterations with a Multiphase Modified Ketogenic Diet.},
author = {Wang H, Lv X, Zhao S, Yuan W, Zhou Q, Sadiq FA, Zhao J, Lu W, Wu W.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15194163},
pmid = {37836447}
}
@article{lin400111,
title = {Ex Vivo Colonic Fermentation of NUTRIOSE® Exerts Immuno-Modulatory Properties and Strong Anti-Inflammatory Effects.},
author = {Perreau C, Thabuis C, Verstrepen L, Ghyselinck J, Marzorati M.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15194229},
pmid = {37836513}
}
@article{lin400049,
title = {Native microbiome dominates over host factors in shaping the probiotic genetic evolution in the gut.},
author = {Jiang S, Zhang C, Han Z, Ma W, Wang S, Huo D, Cui W, Zhai Q, Huang S, Zhang J.},
journal = {NPJ Biofilms Microbiomes},
year = {2023},
doi = {10.1038/s41522-023-00447-8},
pmid = {37838684}
}
@article{lin399723,
title = {Relationship between gut microbiota dysbiosis and immune indicator in children with sepsis.},
author = {Lin X, Abdalla M, Yang J, Liu L, Fu Y, Zhang Y, Yang S, Yu H, Ge Y, Zhang S, Kang G, Dang W, Jiang Q, Wang Y, Gai Z.},
journal = {BMC Pediatr},
year = {2023},
doi = {10.1186/s12887-023-04349-8},
pmid = {37845615}
}
@article{lin399768,
title = {LACC1 regulates changes in the intestinal flora in a mouse model of inflammatory bowel disease.},
author = {Xu ZY, Wang JC.},
journal = {BMC Gastroenterol},
year = {2023},
doi = {10.1186/s12876-023-02971-5},
pmid = {37848840}
}
@article{lin399805,
title = {Xylo-oligosaccharide-based prebiotics upregulate the proteins of the Sus-like system in caecal Bacteroidetes of the chicken: evidence of stimbiotic mechanism.},
author = {Amir SE, Naeem M, Boocock D, Coveney C, O'Neill HM, Bedford MR, Burton EJ.},
journal = {Poult Sci},
year = {2023},
doi = {10.1016/j.psj.2023.103113},
pmid = {37856910}
}
@article{lin399576,
title = {High Soluble Fiber Promotes Colorectal Tumorigenesis Through Modulating Gut Microbiota and Metabolites in Mice.},
author = {Yang J, Wei H, Lin Y, Chu ESH, Zhou Y, Gou H, Guo S, Lau HCH, Cheung AHK, Chen H, To KF, Sung JJY, Wang Y, Yu J.},
journal = {Gastroenterology},
year = {2024},
doi = {10.1053/j.gastro.2023.10.012},
pmid = {37858797}
}
@article{lin399564,
title = {Interactions between wheat germ polysaccharide and gut microbiota through in vitro batch fecal fermentation and an aging mice model: Targeting enrichment of Bacteroides uniformis and Bifidobacterium pseudocatenulatum.},
author = {Duan H, Yu Q, Ni Y, Li J, Yu L, Fan L.},
journal = {Int J Biol Macromol},
year = {2023},
doi = {10.1016/j.ijbiomac.2023.127559},
pmid = {37865367}
}
@article{lin399857,
title = {Characteristics of intestinal flora in patients with cerebral infarction complicated with Type 2 diabetes mellitus.},
author = {Cheng X, Zhang Z, Dong W, Lun Y, Liu B.},
journal = {Zhong Nan Da Xue Xue Bao Yi Xue Ban},
year = {2023},
doi = {10.11817/j.issn.1672-7347.2023.220558},
pmid = {37875356}
}
@article{lin400402,
title = {A bacterial spermidine biosynthetic pathway via carboxyaminopropylagmatine.},
author = {Xi H, Nie X, Gao F, Liang X, Li H, Zhou H, Cai Y, Yang C.},
journal = {Sci Adv},
year = {2023},
doi = {10.1126/sciadv.adj9075},
pmid = {37878710}
}
@article{lin400155,
title = {Multiomics Revealed the Multi-Dimensional Effects of Late Sleep on Gut Microbiota and Metabolites in Children in Northwest China.},
author = {Xiang X, Chen J, Zhu M, Gao H, Liu X, Wang Q, Wang Q.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15204315},
pmid = {37892391}
}
@article{lin399947,
title = {Mucosal Microbiome in Patients with Early Bowel Polyps: Inferences from Short-Read and Long-Read 16S rRNA Sequencing.},
author = {Welham Z, Li J, Engel AF, Molloy MP.},
journal = {Cancers (Basel)},
year = {2023},
doi = {10.3390/cancers15205045},
pmid = {37894412}
}
@article{lin399790,
title = {Gut Microbiota Patterns in Patients with Non-Alcoholic Fatty Liver Disease: A Comprehensive Assessment Using Three Analysis Methods.},
author = {Korobeinikova AV, Zlobovskaya OA, Sheptulina AF, Ashniev GA, Bobrova MM, Yafarova AA, Akasheva DU, Kabieva SS, Bakoev SY, Zagaynova AV, Lukashina MV, Abramov IA, Pokrovskaya MS, Doludin YV, Tolkacheva LR, Kurnosov AS, Zyatenkova EV, Lavrenova EA, Efimova IA, Glazunova EV, Kiselev AR, Shipulin GA, Kontsevaya AV, Keskinov AA, Yudin VS, Makarov VV, Drapkina OM, Yudin SM.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms242015272},
pmid = {37894951}
}
@article{lin400407,
title = {Investigating Antibody Reactivity to the Intestinal Microbiome in Severe Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): A Feasibility Study.},
author = {Seton KA, Defernez M, Telatin A, Tiwari SK, Savva GM, Hayhoe A, Noble A, de Carvalho-KoK ALS, James SA, Bansal A, Wileman T, Carding SR.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms242015316},
pmid = {37895005}
}
@article{lin400339,
title = {Comparison of gene clustering criteria reveals intrinsic uncertainty in pangenome analyses.},
author = {Manzano-Morales S, Liu Y, Gonzalez-Bodi S, Huerta-Cepas J, Iranzo J.},
journal = {Genome Biol},
year = {2023},
doi = {10.1186/s13059-023-03089-3},
pmid = {37904249}
}
@article{lin400104,
title = {Cross-cohort single-nucleotide-variant profiling of gut microbiota suggests a novel gut-health assessment approach.},
author = {Ma C, Zhang Y, Jiang S, Teng F, Huang S, Zhang J.},
journal = {mSystems},
year = {2023},
doi = {10.1128/msystems.00828-23},
pmid = {37905808}
}
@article{lin399972,
title = {Fecal short-chain fatty acids in non-constipated irritable bowel syndrome: a potential clinically relevant stratification factor based on catabotyping analysis.},
author = {Gargari G, Mantegazza G, Taverniti V, Gardana C, Valenza A, Rossignoli F, Barbaro MR, Marasco G, Cremon C, Barbara G, Guglielmetti S.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2274128},
pmid = {37910479}
}
@article{lin400039,
title = {Gut microbiota response to in vitro transit time variation is mediated by microbial growth rates, nutrient use efficiency and adaptation to in vivo transit time.},
author = {Minnebo Y, Delbaere K, Goethals V, Raes J, Van de Wiele T, De Paepe K.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01691-y},
pmid = {37926855}
}
@article{lin400231,
title = {Inflammatory bowel disease biomarkers revealed by the human gut microbiome network.},
author = {Hu M, Caldarelli G, Gili T.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-46184-y},
pmid = {37940667}
}
@article{lin400309,
title = {Microbiome modulation in inflammatory diseases: Progress to microbiome genetic engineering.},
author = {Mousavinasab F, Karimi R, Taheri S, Ahmadvand F, Sanaaee S, Najafi S, Halvaii MS, Haghgoo A, Zamany M, Majidpoor J, Khosravifar M, Baniasadi M, Talebi M, Movafagh A, Aghaei-Zarch SM, Khorram N, Farnia P, Kalhor K.},
journal = {Cancer Cell Int},
year = {2023},
doi = {10.1186/s12935-023-03095-2},
pmid = {37951913}
}
@article{lin400376,
title = {Targeting gut microbiota: new therapeutic opportunities in multiple sclerosis.},
author = {Kujawa D, Laczmanski L, Budrewicz S, Pokryszko-Dragan A, Podbielska M.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2274126},
pmid = {37979154}
}
@article{lin400036,
title = {The Dose-Response Effect of Fluoride Exposure on the Gut Microbiome and Its Functional Pathways in Rats.},
author = {Mo Z, Wang J, Meng X, Li A, Li Z, Que W, Wang T, Tarnue KF, Ma X, Liu Y, Yan S, Wu L, Zhang R, Pei J, Wang X.},
journal = {Metabolites},
year = {2023},
doi = {10.3390/metabo13111159},
pmid = {37999254}
}
@article{lin400124,
title = {Metagenomic analysis reveals distinct changes in the gut microbiome of obese Chinese children.},
author = {Li P, Jiang J, Li Y, Lan Y, Yang F, Wang J, Xie Y, Xiong F, Wu J, Liu H, Fan Z.},
journal = {BMC Genomics},
year = {2023},
doi = {10.1186/s12864-023-09805-4},
pmid = {38031016}
}
@article{lin81272,
title = {Dissecting the role of the gut microbiome and fecal microbiota transplantation in radio- and immunotherapy treatment of colorectal cancer.},
author = {Van Dingenen L, Segers C, Wouters S, Mysara M, Leys N, Kumar-Singh S, Malhotra-Kumar S, Van Houdt R.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1298264},
pmid = {38035338}
}
@article{lin400024,
title = {The Maternal Microbiome as a Map to Understanding the Impact of Prenatal Stress on Offspring Psychiatric Health.},
author = {Kimmel MC, Verosky B, Chen HJ, Davis O, Gur TL.},
journal = {Biol Psychiatry},
year = {2024},
doi = {10.1016/j.biopsych.2023.11.014},
pmid = {38042328}
}
@article{lin81270,
title = {A simple method that enhances minority species detection in the microbiota: 16S metagenome-DRIP (Deeper Resolution using an Inhibitory Primer).},
author = {Nakajima A, Yoshida K, Gotoh A, Katoh T, Ojima MN, Sakanaka M, Xiao JZ, Odamaki T, Katayama T.},
journal = {Microbiome Res Rep},
year = {2022},
doi = {10.20517/mrr.2022.08},
pmid = {38046362}
}
@article{lin400403,
title = {A pilot study of dietary fibres on pathogen growth in an ex vivo colonic model reveals their potential ability to limit vancomycin-resistant Enterococcus expansion.},
author = {Strain R, Tran TTT, Mills S, Stanton C, Ross RP.},
journal = {Microbiome Res Rep},
year = {2023},
doi = {10.20517/mrr.2022.14},
pmid = {38046819}
}
@article{lin400178,
title = {Total Astragalus saponins can reverse type 2 diabetes mellitus-related intestinal dysbiosis and hepatic insulin resistance in vivo.},
author = {Ma L, La X, Zhang B, Xu W, Tian C, Fu Q, Wang M, Wu C, Chen Z, Chang H, Li JA.},
journal = {Front Endocrinol (Lausanne)},
year = {2023},
doi = {10.3389/fendo.2023.1190827},
pmid = {38053727}
}
@article{lin400015,
title = {Disentangling the age-related manner in the associations between gut microbiome and women's health: a multi-cohort microbiome study.},
author = {Dong C, Guan Q, Xu W, Zhang X, Jin B, Yu S, Xu X, Xia Y.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2290320},
pmid = {38059752}
}
@article{lin400017,
title = {Prediction of BMI traits in the Chinese population based on the gut metagenome.},
author = {Liang Y, Dou S, Zhao G, Shen J, Fu G, Fu L, Li S, Cong B, Dong C.},
journal = {Microb Cell Fact},
year = {2023},
doi = {10.1186/s12934-023-02255-3},
pmid = {38066544}
}
@article{lin400371,
title = {A bacterial sensor taxonomy across earth ecosystems for machine learning applications.},
author = {Park H, Joachimiak MP, Jungbluth SP, Yang Z, Riehl WJ, Canon RS, Arkin AP, Dehal PS.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.00026-23},
pmid = {38078749}
}
@article{lin400288,
title = {Neuroblastoma is associated with alterations in gut microbiome composition subsequent to maternal microbial seeding.},
author = {Valles-Colomer M, Manghi P, Cumbo F, Masetti G, Armanini F, Asnicar F, Blanco-Miguez A, Pinto F, Puncochar M, Garaventa A, Amoroso L, Ponzoni M, Corrias MV, Segata N.},
journal = {EBioMedicine},
year = {2024},
doi = {10.1016/j.ebiom.2023.104917},
pmid = {38104504}
}
@article{lin400389,
title = {Immune-Related Colitis Is Associated with Fecal Microbial Dysbiosis and Can Be Mitigated by Fecal Microbiota Transplantation.},
author = {Elkrief A, Waters NR, Smith N, Dai A, Slingerland J, Aleynick N, Febles B, Gogia P, Socci ND, Lumish M, Giardina PA, Chaft JE, Eng J, Motzer RJ, Mendelsohn RB, Markey KA, Zhuang M, Li Y, Yang Z, Hollmann TJ, Rudin CM, van den Brink MRM, Shia J, DeWolf S, Schoenfeld AJ, Hellmann MD, Babady NE, Faleck DM, Peled JU.},
journal = {Cancer Immunol Res},
year = {2024},
doi = {10.1158/2326-6066.cir-23-0498},
pmid = {38108398}
}
@article{lin400215,
title = {Combined analysis of cross-population healthy adult human microbiome reveals consistent differences in gut microbial characteristics between Western and non-Western countries.},
author = {Sheng Y, Wang J, Gao Y, Peng Y, Li X, Huang W, Zhou H, Liu R, Zhang W.},
journal = {Comput Struct Biotechnol J},
year = {2024},
doi = {10.1016/j.csbj.2023.11.047},
pmid = {38116074}
}
@article{lin400077,
title = {The impact of gut microbiome enterotypes on ulcerative colitis: identifying key bacterial species and revealing species co-occurrence networks using machine learning.},
author = {Wu X, Zhang T, Zhang T, Park S.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2023.2292254},
pmid = {38117560}
}
@article{lin400084,
title = {Attenuation of allergen-specific immunotherapy for atopic dermatitis by ectopic colonization of Brevundimonas vesicularis in the intestine.},
author = {Liu X, Xu B, Xu X, Wang Z, Luo Y, Gao Y, Ling S, Wang A, Zhou Y, Wang X, Leng SX, Li W, Yao X.},
journal = {Cell Rep Med},
year = {2023},
doi = {10.1016/j.xcrm.2023.101340},
pmid = {38118418}
}
@article{lin399583,
title = {A global perspective on microbial risk factors in effluents of wastewater treatment plants.},
author = {Chen K, Liang J, Wang Y, Tao Y, Lu Y, Wang A.},
journal = {J Environ Sci (China)},
year = {2024},
doi = {10.1016/j.jes.2023.04.012},
pmid = {38135391}
}
@article{lin400088,
title = {High Diversity but Monodominance of Multidrug-Resistant Bacteria in Immunocompromised Pediatric Patients with Acute Lymphoblastic Leukemia Developing GVHD Are Not Associated with Changes in Gut Mycobiome.},
author = {Sardzikova S, Andrijkova K, Svec P, Beke G, Klucar L, Minarik G, Bielik V, Kolenova A, Soltys K.},
journal = {Antibiotics (Basel)},
year = {2023},
doi = {10.3390/antibiotics12121667},
pmid = {38136701}
}
@article{lin399923,
title = {Impact of Baizhu, Daqingye, and Hehuanhua extracts on the human gut microbiome.},
author = {Lemons JMS, Narrowe AB, Liu L, Firrman J, Mahalak KK, Van den Abbeele P, Baudot A, Deyaert S, Li Y, Yu LL.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1298392},
pmid = {38145049}
}
@article{lin400160,
title = {Dynamical alterations of brain function and gut microbiome in weight loss.},
author = {Zhou J, Wu X, Xiang T, Liu F, Gao H, Tong L, Yan B, Li Z, Zhang C, Wang L, Ou L, Li Z, Wang W, Yang T, Li F, Ma H, Zhao X, Mi N, Yu Z, Lan C, Wang Q, Li H, Wang L, Wang X, Li Y, Zeng Q.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1269548},
pmid = {38173792}
}
@article{lin400273,
title = {Novel Bacteroides Vulgatus strain protects against gluten-induced break of human celiac gut epithelial homeostasis: a pre-clinical proof-of-concept study.},
author = {Tran T, Senger S, Baldassarre M, Brosnan RA, Cristofori F, Crocco M, De Santis S, Elli L, Faherty CS, Francavilla R, Goodchild-Michelman I, Kenyon VA, Leonard MM, Lima RS, Malerba F, Montuori M, Morelli A, Norsa L, Passaro T, Piemontese P, Reed JC, Sansotta N, Valitutti F, Zomorrodi AR, Fasano A, CDGEMM Team.},
journal = {Pediatr Res},
year = {2024},
doi = {10.1038/s41390-023-02960-0},
pmid = {38177249}
}
@article{lin399866,
title = {Effects of blackcurrant extract on indole and ammonia productions in an in vitro human fecal culture model.},
author = {Ishiguro N, Hayashi T, Okayama M, Yamaguchi T, Kohno M, Kawakami H, Mitsunaga T, Nakamura K, Inagaki M.},
journal = {Biosci Microbiota Food Health},
year = {2024},
doi = {10.12938/bmfh.2022-094},
pmid = {38188663}
}
@article{lin400274,
title = {Role of intestinal flora in the development of nonalcoholic fatty liver disease in children.},
author = {Zhang J, Shi M, Zhao C, Liang G, Li C, Ge X, Pei C, Kong Y, Li D, Yang W, Cao B, Fu L, Yan Y, Wu J, Zhou J, Fang Y, Meng X, Li Y, Wang L, Wang L.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.01006-23},
pmid = {38189294}
}
@article{lin399645,
title = {Prophylactic treatment with Bacteroides uniformis and Bifidobacterium bifidum counteracts hepatic NK cell immune tolerance in nonalcoholic steatohepatitis induced by high fat diet.},
author = {Xu J, Xia Q, Wu T, Shao Y, Wang Y, Jin N, Tian P, Wu L, Lu X.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2302065},
pmid = {38196273}
}
@article{lin399911,
title = {Dietary Milk or Isolated Legume Proteins Modulate Intestinal Microbiota Composition in Rats.},
author = {Rubio LA.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16010149},
pmid = {38201979}
}
@article{lin400285,
title = {The Role of the Gut Microbiota in Anorexia Nervosa in Children and Adults-Systematic Review.},
author = {Anton-Paduraru DT, Trofin F, Nastase EV, Miftode RS, Miftode IL, Trandafirescu MF, Cojocaru E, Tarca E, Mindru DE, Dorneanu OS.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms25010041},
pmid = {38203211}
}
@article{lin81324,
title = {A bacterial sialidase mediates early-life colonization by a pioneering gut commensal.},
author = {Buzun E, Hsu CY, Sejane K, Oles RE, Vasquez Ayala A, Loomis LR, Zhao J, Rossitto LA, McGrosso DM, Gonzalez DJ, Bode L, Chu H.},
journal = {Cell Host Microbe},
year = {2024},
doi = {10.1016/j.chom.2023.12.014},
pmid = {38228143}
}
@article{lin400186,
title = {Commensal antimicrobial resistance mediates microbiome resilience to antibiotic disruption.},
author = {Bhattarai SK, Du M, Zeamer AL, M Morzfeld B, Kellogg TD, Firat K, Benjamin A, Bean JM, Zimmerman M, Mardi G, Vilbrun SC, Walsh KF, Fitzgerald DW, Glickman MS, Bucci V.},
journal = {Sci Transl Med},
year = {2024},
doi = {10.1126/scitranslmed.adi9711},
pmid = {38232140}
}
@article{lin400265,
title = {Exploring the presence of oral bacteria in non-oral sites of patients with cardiovascular diseases using whole metagenomic data.},
author = {Chopra A, Franco-Duarte R, Rajagopal A, Choowong P, Soares P, Rito T, Eberhard J, Jayasinghe TN.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-023-50891-x},
pmid = {38233502}
}
@article{lin400185,
title = {The Trajectory of Successful Aging: Insights from Metagenome and Cytokine Profiling.},
author = {Chulenbayeva L, Ganzhula Y, Kozhakhmetov S, Jarmukhanov Z, Nurgaziyev M, Nurgozhina A, Muhanbetzhanov N, Sergazy S, Zhetkenev S, Borykbay Z, Tkachev V, Urazova S, Vinogradova E, Kushugulova A.},
journal = {Gerontology},
year = {2024},
doi = {10.1159/000536082},
pmid = {38246133}
}
@article{lin400299,
title = {Exploring Metabolic and Gut Microbiome Responses to Paraquat Administration in Male Wistar Rats: Implications for Oxidative Stress.},
author = {Hernandez-Baixauli J, Chomiciute G, Tracey H, Mora I, Cortes-Espinar AJ, Avila-Roman J, Abasolo N, Palacios-Jordan H, Foguet-Romero E, Sunol D, Galofre M, Alcaide-Hidalgo JM, Baselga-Escudero L, Del Bas JM, Mulero M.},
journal = {Antioxidants (Basel)},
year = {2024},
doi = {10.3390/antiox13010067},
pmid = {38247491}
}
@article{lin400145,
title = {A Long-Chain Dextran Produced by Weissella cibaria Boosts the Diversity of Health-Related Gut Microbes Ex Vivo.},
author = {Tintore M, Cune J, Vu LD, Poppe J, Van den Abbeele P, Baudot A, de Lecea C.},
journal = {Biology (Basel)},
year = {2024},
doi = {10.3390/biology13010051},
pmid = {38248481}
}
@article{lin399941,
title = {Conditional Vitamin D Receptor Deletion Induces Fungal and Archaeal Dysbiosis and Altered Metabolites.},
author = {Claypool DJ, Zhang YG, Xia Y, Sun J.},
journal = {Metabolites},
year = {2024},
doi = {10.3390/metabo14010032},
pmid = {38248835}
}
@article{lin400388,
title = {Intratumoral microorganisms in tumors of the digestive system.},
author = {Xuan M, Gu X, Liu Y, Yang L, Li Y, Huang D, Li J, Xue C.},
journal = {Cell Commun Signal},
year = {2024},
doi = {10.1186/s12964-023-01425-5},
pmid = {38273292}
}
@article{lin400134,
title = {Bacteroides thetaiotaomicron ameliorates mouse hepatic steatosis through regulating gut microbial composition, gut-liver folate and unsaturated fatty acids metabolism.},
author = {Li H, Wang XK, Tang M, Lei L, Li JR, Sun H, Jiang J, Dong B, Li HY, Jiang JD, Peng ZG.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2304159},
pmid = {38277137}
}
@article{lin399758,
title = {Butyricimonas is a key gut microbiome component for predicting postoperative recurrence of esophageal cancer.},
author = {Otsuka K, Isobe J, Asai Y, Nakano T, Hattori K, Ariyoshi T, Yamashita T, Motegi K, Saito A, Kohmoto M, Hosonuma M, Kuramasu A, Baba Y, Murayama M, Narikawa Y, Toyoda H, Funayama E, Tajima K, Shida M, Hirasawa Y, Tsurui T, Ariizumi H, Ishiguro T, Suzuki R, Ohkuma R, Kubota Y, Sambe T, Tsuji M, Wada S, Kiuchi Y, Kobayashi S, Horiike A, Goto S, Murakami M, Kim YG, Tsunoda T, Yoshimura K.},
journal = {Cancer Immunol Immunother},
year = {2024},
doi = {10.1007/s00262-023-03608-y},
pmid = {38280026}
}
@article{lin399993,
title = {Neurodevelopmental functions of CHD8: new insights and questions.},
author = {Basson MA.},
journal = {Biochem Soc Trans},
year = {2024},
doi = {10.1042/bst20220926},
pmid = {38288845}
}
@article{lin400083,
title = {Chronic intestinal pseudo-obstruction: associations with gut microbiota and genes expression of intestinal serotonergic pathway.},
author = {Radocchia G, Marazzato M, Harbi KB, Capuzzo E, Pantanella F, De Giorgio R, Guarino M, Costanzini A, Zenzeri L, Parisi P, Ferretti A, Felici E, Palamara AT, Di Nardo G, Schippa S.},
journal = {BMC Microbiol},
year = {2024},
doi = {10.1186/s12866-024-03200-z},
pmid = {38302874}
}
@article{lin400255,
title = {High-fat diet feeding exacerbates HIV-1 rectal transmission.},
author = {Lohani SC, Ramer-Tait AE, Li Q.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.01322-23},
pmid = {38303112}
}
@article{lin400172,
title = {Short-chain fatty acids of various lengths differentially inhibit Klebsiella pneumoniae and Enterobacteriaceae species.},
author = {Chang KC, Nagarajan N, Gan Y-H.},
journal = {mSphere},
year = {2024},
doi = {10.1128/msphere.00781-23},
pmid = {38305176}
}
@article{lin399566,
title = {Anti-Diabetic Potentials of Lactobacillus Strains by Modulating Gut Microbiota Structure and beta-Cells Regeneration in the Pancreatic Islets of Alloxan-Induced Diabetic Rats.},
author = {Kumar M, Muthurayar T, Karthika S, Gayathri S, Varalakshmi P, Ashokkumar B.},
journal = {Probiotics Antimicrob Proteins},
year = {2025},
doi = {10.1007/s12602-024-10221-7},
pmid = {38329697}
}
@article{lin399846,
title = {Temporal variations in the gut microbial diversity in response to high-fat diet and exercise.},
author = {Imdad S, So B, Jang J, Park J, Lee SJ, Kim JH, Kang C.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-52852-4},
pmid = {38332014}
}
@article{lin400040,
title = {Improved Equine Fecal Microbiome Characterization Using Target Enrichment by Hybridization Capture.},
author = {Alvarez Narvaez S, Beaudry MS, Norris CG, Bartlett PB, Glenn TC, Sanchez S.},
journal = {Animals (Basel)},
year = {2024},
doi = {10.3390/ani14030445},
pmid = {38338088}
}
@article{lin399886,
title = {Horizontal gene transfer after faecal microbiota transplantation in adolescents with obesity.},
author = {Behling AH, Wilson BC, Ho D, Cutfield WS, Vatanen T, O'Sullivan JM.},
journal = {Microbiome},
year = {2024},
doi = {10.1186/s40168-024-01748-6},
pmid = {38347627}
}
@article{lin400320,
title = {Pharmacomicrobiomics: Immunosuppressive Drugs and Microbiome Interactions in Transplantation.},
author = {Mohamed ME, Saqr A, Staley C, Onyeaghala G, Teigen L, Dorr CR, Remmel RP, Guan W, Oetting WS, Matas AJ, Israni AK, Jacobson PA.},
journal = {Transplantation},
year = {2024},
doi = {10.1097/tp.0000000000004926},
pmid = {38361239}
}
@article{lin400278,
title = {Temporal colonization and metabolic regulation of the gut microbiome in neonatal oxen at single nucleotide resolution.},
author = {Dong Q, Hua D, Wang X, Jiao Y, Liu L, Deng Q, Wu T, Zou H, Zhao C, Wang C, Reng J, Ding L, Hu S, Shi J, Wang Y, Zhang H, Sheng Y, Sun W, Shen Y, Tang L, Kong X, Chen L.},
journal = {ISME J},
year = {2024},
doi = {10.1093/ismejo/wrad022},
pmid = {38365257}
}
@article{lin400277,
title = {Ecological niches and assembly dynamics of diverse microbial consortia in the gastrointestine of goat kids.},
author = {Jiao J, Wu J, Zhou C, He Z, Tan Z, Wang M.},
journal = {ISME J},
year = {2024},
doi = {10.1093/ismejo/wrae002},
pmid = {38365259}
}
@article{lin399924,
title = {Insights into gut microbiomes in stem cell transplantation by comprehensive shotgun long-read sequencing.},
author = {Spohr P, Scharf S, Rommerskirchen A, Henrich B, Jager P, Klau GW, Haas R, Dilthey A, Pfeffer K.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-53506-1},
pmid = {38374282}
}
@article{lin399977,
title = {Microbiome features associated with performance measures in athletic and non-athletic individuals: A case-control study.},
author = {Huminska-Lisowska K, Zielinska K, Mieszkowski J, Michalowska-Sawczyn M, Cieszczyk P, Labaj PP, Wasag B, Fraczek B, Grzywacz A, Kochanowicz A, Kosciolek T.},
journal = {PLoS One},
year = {2024},
doi = {10.1371/journal.pone.0297858},
pmid = {38381714}
}
@article{lin400035,
title = {Gut resistome profiling reveals high diversity and fluctuations in pancreatic cancer cohorts.},
author = {Liu X, Li K, Yang Y, Cao D, Xu X, He Z, Wu W.},
journal = {Front Cell Infect Microbiol},
year = {2024},
doi = {10.3389/fcimb.2024.1354234},
pmid = {38384305}
}
@article{lin399820,
title = {Gut Microbiome Changes in Anorexia Nervosa: A Comprehensive Review.},
author = {Zhao W, Kodancha P, Das S.},
journal = {Pathophysiology},
year = {2024},
doi = {10.3390/pathophysiology31010006},
pmid = {38390943}
}
@article{lin399991,
title = {Changes in HLA-B27 Transgenic Rat Fecal Microbiota Following Tofacitinib Treatment and Ileocecal Resection Surgery: Implications for Crohn's Disease Management.},
author = {Blondeaux A, Valibouze C, Speca S, Rousseaux C, Dubuquoy C, Blanquart H, Zerbib P, Desreumaux P, Foligne B, Titecat M.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25042164},
pmid = {38396840}
}
@article{lin400398,
title = {The Microbiome Modulates the Immune System to Influence Cancer Therapy.},
author = {Roy R, Singh SK.},
journal = {Cancers (Basel)},
year = {2024},
doi = {10.3390/cancers16040779},
pmid = {38398170}
}
@article{lin399888,
title = {Intestinal microbiota composition of children with glycogen storage Type I patients.},
author = {Gokalp S, Dinleyici EC, Muluk C, Inci A, Aktas E, Okur I, Ezgu F, Tumer L.},
journal = {Eur J Clin Nutr},
year = {2024},
doi = {10.1038/s41430-024-01412-0},
pmid = {38402355}
}
@article{lin400161,
title = {Differences in gut microbiota between Dutch and South-Asian Surinamese: potential implications for type 2 diabetes mellitus.},
author = {Nayman EI, Schwartz BA, Polmann M, Gumabong AC, Nieuwdorp M, Cickovski T, Mathee K.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-54769-4},
pmid = {38403716}
}
@article{lin399840,
title = {Alterations of the gut microbiome are associated with epigenetic age acceleration and physical fitness.},
author = {Torma F, Kerepesi C, Jokai M, Babszki G, Koltai E, Ligeti B, Kalcsevszki R, McGreevy KM, Horvath S, Radak Z.},
journal = {Aging Cell},
year = {2024},
doi = {10.1111/acel.14101},
pmid = {38414315}
}
@article{lin399880,
title = {Sleep deprivation-induced anxiety-like behaviors are associated with alterations in the gut microbiota and metabolites.},
author = {Zhang N, Gao X, Li D, Xu L, Zhou G, Xu M, Peng L, Sun G, Pan F, Li Y, Ren R, Huang R, Yang Y, Wang Z.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.01437-23},
pmid = {38421192}
}
@article{lin400315,
title = {Two intestinal microbiota-derived metabolites, deoxycholic acid and butyrate, synergize to enhance host defense peptide synthesis and alleviate necrotic enteritis.},
author = {Kim DM, Liu J, Whitmore MA, Tobin I, Zhao Z, Zhang G.},
journal = {J Anim Sci Biotechnol},
year = {2024},
doi = {10.1186/s40104-024-00995-9},
pmid = {38429856}
}
@article{lin400239,
title = {Transmission and dynamics of mother-infant gut viruses during pregnancy and early life.},
author = {Garmaeva S, Sinha T, Gulyaeva A, Kuzub N, Spreckels JE, Andreu-Sanchez S, Gacesa R, Vich Vila A, Brushett S, Kruk M, Lifelines NEXT cohort study, Dekens J, Sikkema J, Kuipers F, Shkoporov AN, Hill C, Scherjon S, Wijmenga C, Fu J, Kurilshikov A, Zhernakova A.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-45257-4},
pmid = {38431663}
}
@article{lin399549,
title = {IgA-mediated control of host-microbial interaction during weaning reaction influences gut inflammation.},
author = {Tang W, Wei Y, Ni Z, Hou K, Luo XM, Wang H.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2323220},
pmid = {38439579}
}
@article{lin399796,
title = {Christensenella minuta interacts with multiple gut bacteria.},
author = {Xu C, Jiang H, Feng LJ, Jiang MZ, Wang YL, Liu SJ.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1301073},
pmid = {38440147}
}
@article{lin400153,
title = {Taxonomic and metabolic development of the human gut microbiome across life stages: a worldwide metagenomic investigation.},
author = {Mancabelli L, Milani C, De Biase R, Bocchio F, Fontana F, Lugli GA, Alessandri G, Tarracchini C, Viappiani A, De Conto F, Nouvenne A, Ticinesi A, Bussolati O, Meschi T, Cecchi R, Turroni F, Ventura M.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.01294-23},
pmid = {38441032}
}
@article{lin399695,
title = {Inter-phylum circulation of a beta-lactamase-encoding gene: a rare but observable event.},
author = {Gschwind R, Petitjean M, Fournier C, Lao J, Clermont O, Nordmann P, Mellmann A, Denamur E, Poirel L, Ruppe E.},
journal = {Antimicrob Agents Chemother},
year = {2024},
doi = {10.1128/aac.01459-23},
pmid = {38441061}
}
@article{lin400154,
title = {Colonic in vitro fermentation of mycoprotein promotes shifts in gut microbiota, with enrichment of Bacteroides species.},
author = {Colosimo R, Harris HC, Ahn-Jarvis J, Troncoso-Rey P, Finnigan TJA, Wilde PJ, Warren FJ.},
journal = {Commun Biol},
year = {2024},
doi = {10.1038/s42003-024-05893-4},
pmid = {38443511}
}
@article{lin399626,
title = {Uncovering the complexity of childhood undernutrition through strain-level analysis of the gut microbiome.},
author = {Chang B, Zhang W, Wang Y, Zhang Y, Zhong S, Gao P, Wang L, Zhao Z.},
journal = {BMC Microbiol},
year = {2024},
doi = {10.1186/s12866-024-03211-w},
pmid = {38443783}
}
@article{lin400086,
title = {Systemic metabolic depletion of gut microbiome undermines responsiveness to melanoma immunotherapy.},
author = {Zakharevich NV, Morozov MD, Kanaeva VA, Filippov MS, Zyubko TI, Ivanov AB, Ulyantsev VI, Klimina KM, Olekhnovich EI.},
journal = {Life Sci Alliance},
year = {2024},
doi = {10.26508/lsa.202302480},
pmid = {38448159}
}
@article{lin400311,
title = {Short term supplementation with cranberry extract modulates gut microbiota in human and displays a bifidogenic effect.},
author = {Lessard-Lord J, Roussel C, Lupien-Meilleur J, Genereux P, Richard V, Guay V, Roy D, Desjardins Y.},
journal = {NPJ Biofilms Microbiomes},
year = {2024},
doi = {10.1038/s41522-024-00493-w},
pmid = {38448452}
}
@article{lin400151,
title = {Study of the intestinal microbiota composition and the effect of treatment with intensive chemotherapy in patients recovered from acute leukemia.},
author = {Vazquez X, Lumbreras-Iglesias P, Rodicio MR, Fernandez J, Bernal T, Moreno AF, de Ugarriza PL, Fernandez-Verdugo A, Margolles A, Sabater C.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-56054-w},
pmid = {38454103}
}
@article{lin399545,
title = {The roles of different Bacteroides uniformis strains in alleviating DSS-induced ulcerative colitis and related functional genes.},
author = {Wang C, Guo H, Bai J, Yu L, Tian F, Zhao J, Zhang H, Chen W, Zhai Q.},
journal = {Food Funct},
year = {2024},
doi = {10.1039/d3fo04863b},
pmid = {38465411}
}
@article{lin399656,
title = {The Predictive Value of Gut Microbiota Composition for Sustained Immunogenicity following Two Doses of CoronaVac.},
author = {Ng HY, Liao Y, Zhang R, Chan KH, To WP, Hui CH, Seto WK, Leung WK, Hung IFN, Lam TTY, Cheung KS.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25052583},
pmid = {38473829}
}
@article{lin400063,
title = {Gut Microbiome and Metabolome Modulation by High-Hydrostatic-Pressure-Processed Tomato Juice.},
author = {Wang X, Li D, Ma C, Hu X, Chen F.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16050710},
pmid = {38474836}
}
@article{lin400157,
title = {Alteration in the gut microbiome is associated with changes in bone metabolism after laparoscopic sleeve gastrectomy.},
author = {Wu KC, McCauley KE, Lynch SV, Nayak RR, King NJ, Patel S, Kim TY, Condra K, Fadrosh D, Nguyen D, Lin DL, Lynch K, Rogers SJ, Carter JT, Posselt AM, Stewart L, Schafer AL.},
journal = {J Bone Miner Res},
year = {2024},
doi = {10.1093/jbmr/zjad017},
pmid = {38477719}
}
@article{lin399873,
title = {In-depth multiomic characterization of the effects of obesity in high-fat diet-fed mice.},
author = {Li B, Chen J, Ou X, Liu X, Xu Z, Xiang X, Yang Y, Wang Q.},
journal = {FEBS Open Bio},
year = {2024},
doi = {10.1002/2211-5463.13788},
pmid = {38479983}
}
@article{lin399556,
title = {Bifidobacterium adolescentis CCFM1285 combined with yeast beta-glucan alleviates the gut microbiota and metabolic disturbances in mice with antibiotic-associated diarrhea.},
author = {Guo H, He X, Yu L, Tian F, Chen W, Zhai Q.},
journal = {Food Funct},
year = {2024},
doi = {10.1039/d3fo05421g},
pmid = {38488198}
}
@article{lin400358,
title = {Identification and structural basis of an enzyme that degrades oligosaccharides in caramel.},
author = {Kashima T, Ishiwata A, Fujita K, Fushinobu S.},
journal = {Biophys Physicobiol},
year = {2023},
doi = {10.2142/biophysico.bppb-v20.0017},
pmid = {38496246}
}
@article{lin400055,
title = {Differential network connectivity analysis for microbiome data adjusted for clinical covariates using jackknife pseudo-values.},
author = {Ahn S, Datta S.},
journal = {BMC Bioinformatics},
year = {2024},
doi = {10.1186/s12859-024-05689-7},
pmid = {38500042}
}
@article{lin399558,
title = {Mannan-oligosaccharides promote gut microecological recovery after antibiotic disturbance.},
author = {Chen J, Yin J, Xie H, Lu W, Wang H, Zhao J, Zhu J.},
journal = {Food Funct},
year = {2024},
doi = {10.1039/d4fo00332b},
pmid = {38511344}
}
@article{lin400150,
title = {mNFE: microbiome network flow entropy for detecting pre-disease states of type 1 diabetes.},
author = {Gao R, Li P, Ni Y, Peng X, Ren J, Chen L.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2327349},
pmid = {38512768}
}
@article{lin81344,
title = {Opposing diet, microbiome, and metabolite mechanisms regulate inflammatory bowel disease in a genetically susceptible host.},
author = {Pereira GV, Boudaud M, Wolter M, Alexander C, De Sciscio A, Grant ET, Trindade BC, Pudlo NA, Singh S, Campbell A, Shan M, Zhang L, Yang Q, Willieme S, Kim K, Denike-Duval T, Fuentes J, Bleich A, Schmidt TM, Kennedy L, Lyssiotis CA, Chen GY, Eaton KA, Desai MS, Martens EC.},
journal = {Cell Host Microbe},
year = {2024},
doi = {10.1016/j.chom.2024.03.001},
pmid = {38513656}
}
@article{lin400226,
title = {Diet replacement with whole insect larvae affects intestinal morphology and microbiota of broiler chickens.},
author = {Vasilopoulos S, Giannenas I, Mellidou I, Stylianaki I, Antonopoulou E, Tzora A, Skoufos I, Athanassiou CG, Papadopoulos E, Fortomaris P.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-54184-9},
pmid = {38514719}
}
@article{lin400297,
title = {Design of a proteolytic module for improved metabolic modeling of Bacteroides caccae.},
author = {Paulay A, Grimaud GM, Caballero R, Laroche B, Leclerc M, Labarthe S, Maguin E.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.00153-24},
pmid = {38517169}
}
@article{lin400225,
title = {Multi-omic integration of microbiome data for identifying disease-associated modules.},
author = {Muller E, Shiryan I, Borenstein E.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-46888-3},
pmid = {38521774}
}
@article{lin400236,
title = {Microbial-Based Bioactive Compounds to Alleviate Inflammation in Obesity.},
author = {Apalowo OE, Adegoye GA, Obuotor TM.},
journal = {Curr Issues Mol Biol},
year = {2024},
doi = {10.3390/cimb46030119},
pmid = {38534735}
}
@article{lin399586,
title = {Effects of Designed Herbal Formula on Growth Performance, Blood Indices, Organ Traits, and Cecum Microbiology in Broilers.},
author = {Sun Y, Zhang M, Shi D, Dai X, Li X.},
journal = {Vet Sci},
year = {2024},
doi = {10.3390/vetsci11030107},
pmid = {38535841}
}
@article{lin400046,
title = {Uric acid, high density lipoprotein cholesterol levels and their ratio are related to microbial enterotypes and serum metabolites in females with a blood stasis constitution.},
author = {Sun C, Liu Y, Huang W, Chen Y, Deng Y, Yuan J, Deng L, Xu N, Shang X, Wang C, Yang Z, Huang L, Qiu Q.},
journal = {Lipids Health Dis},
year = {2024},
doi = {10.1186/s12944-024-02066-4},
pmid = {38539207}
}
@article{lin399885,
title = {The Circadian Rhythm of the Behavior and Gut Microbiota in Dybowski's Frogs (Rana dybowskii) during the Autumn Migration Period.},
author = {Hu N, Li Y, Wang M, Ji H, Zhang X, San B, Shi H.},
journal = {Life (Basel)},
year = {2024},
doi = {10.3390/life14030322},
pmid = {38541648}
}
@article{lin399876,
title = {Dose-Responsive Effects of Iron Supplementation on the Gut Microbiota in Middle-Aged Women.},
author = {Shearer J, Shah S, MacInnis MJ, Shen-Tu G, Mu C.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16060786},
pmid = {38542697}
}
@article{lin400016,
title = {The altered TBI fecal microbiome is stable and functionally distinct.},
author = {Pyles RB, Miller AL, Urban RJ, Sheffield-Moore M, Wright TJ, Maxwell CA, Randolph KM, Danesi CP, McGovern KA, Vargas J, Armstrong P, Kreber L, Cumpa G, Randall K, Morrison M, Masel BE.},
journal = {Front Mol Neurosci},
year = {2024},
doi = {10.3389/fnmol.2024.1341808},
pmid = {38544523}
}
@article{lin400354,
title = {Hypervirulent Klebsiella pneumoniae employs genomic island encoded toxins against bacterial competitors in the gut.},
author = {Tan YH, Arros P, Berrios-Pasten C, Wijaya I, Chu WHW, Chen Y, Cheam G, Mohamed Naim AN, Marcoleta AE, Ravikrishnan A, Nagarajan N, Lagos R, Gan YH.},
journal = {ISME J},
year = {2024},
doi = {10.1093/ismejo/wrae054},
pmid = {38547398}
}
@article{lin399675,
title = {Colitis reduces active social engagement in mice and is ameliorated by supplementation with human microbiota members.},
author = {Brown DG, Murphy M, Cadeddu R, Bell R, Weis A, Chiaro T, Klag K, Morgan J, Coon H, Stephens WZ, Bortolato M, Round JL.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-46733-7},
pmid = {38553486}
}
@article{lin400192,
title = {The effects of antibiotic exposures on the gut resistome during hematopoietic cell transplantation in children.},
author = {Heston SM, Young RR, Jenkins K, Martin PL, Stokhuyzen A, Ward DV, Bhattarai SK, Bucci V, Arshad M, Chao NJ, Seed PC, Kelly MS.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2333748},
pmid = {38555499}
}
@article{lin400139,
title = {Correlation of distribution characteristics and dynamic changes of gut microbiota with the efficacy of immunotherapy in EGFR-mutated non-small cell lung cancer.},
author = {Luo WC, Mei SQ, Huang ZJ, Chen ZH, Zhang YC, Yang MY, Liu JQ, Xu JY, Yang XR, Zhong RW, Tang LB, Yin LX, Deng Y, Peng YL, Lu C, Chen BL, Ke DX, Tu HY, Yang JJ, Xu CR, Wu YL, Zhou Q.},
journal = {J Transl Med},
year = {2024},
doi = {10.1186/s12967-024-05135-5},
pmid = {38566102}
}
@article{lin399749,
title = {Bacteroides and NAFLD: pathophysiology and therapy.},
author = {Zhang J, Zhou J, He Z, Li H.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1288856},
pmid = {38572244}
}
@article{lin399689,
title = {Impact of Limosilactobacillus fermentum probiotic treatment on gut microbiota composition in sahiwal calves with rotavirus diarrhea: A 16S metagenomic analysis study".},
author = {Murtaza N, Nawaz M, Yaqub T, Mehmood AK.},
journal = {BMC Microbiol},
year = {2024},
doi = {10.1186/s12866-024-03254-z},
pmid = {38575861}
}
@article{lin399561,
title = {The alteration of fecal microbial and metabolic profile of gallstone patients in Taiwan: Single-center study.},
author = {Chang TE, Huang KH, Luo JC, Huang YH, Lin HH, Fang WL, Hou MC.},
journal = {J Chin Med Assoc},
year = {2024},
doi = {10.1097/jcma.0000000000001094},
pmid = {38578093}
}
@article{lin400214,
title = {Integrative metagenomic analysis reveals distinct gut microbial signatures related to obesity.},
author = {Hu X, Yu C, He Y, Zhu S, Wang S, Xu Z, You S, Jiao Y, Liu SL, Bao H.},
journal = {BMC Microbiol},
year = {2024},
doi = {10.1186/s12866-024-03278-5},
pmid = {38580930}
}
@article{lin399957,
title = {Characterization of the gut microbiota and fecal and blood metabolomes under various factors in urban children from Northwest China.},
author = {Yang Y, Chen J, Gao H, Cui M, Zhu M, Xiang X, Wang Q.},
journal = {Front Cell Infect Microbiol},
year = {2024},
doi = {10.3389/fcimb.2024.1374544},
pmid = {38585649}
}
@article{lin399677,
title = {Effect of aerobic exercise and particulate matter exposure duration on the diversity of gut microbiota.},
author = {Imdad S, Kim JH, So B, Jang J, Park J, Lim W, Lee YK, Shin WS, Hillyer T, Kang C.},
journal = {Anim Cells Syst (Seoul)},
year = {2024},
doi = {10.1080/19768354.2024.2338855},
pmid = {38601060}
}
@article{lin400368,
title = {Bioaccessibility of Phenolic Compounds, Resistant Starch, and Dietary Fibers from Australian Green Banana during In Vitro Digestion and Colonic Fermentation.},
author = {Bashmil YM, Dunshea FR, Appels R, Suleria HAR.},
journal = {Molecules},
year = {2024},
doi = {10.3390/molecules29071535},
pmid = {38611814}
}
@article{lin399960,
title = {The Reduced Gut Lachnospira Species Is Linked to Liver Enzyme Elevation and Insulin Resistance in Pediatric Fatty Liver Disease.},
author = {Tsai CC, Chiu MH, Kek HP, Yang MC, Su YT, Liu HK, Wu MS, Yeh YT.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25073640},
pmid = {38612453}
}
@article{lin81315,
title = {A Gnotobiotic Mouse Model with Divergent Equol-Producing Phenotypes: Potential for Determining Microbial-Driven Health Impacts of Soy Isoflavone Daidzein.},
author = {Leonard LM, Simpson AMR, Li S, Reddivari L, Cross TL.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16071079},
pmid = {38613113}
}
@article{lin399569,
title = {[Buzhong Yiqi Decoction ameliorates spleen deficiency syndrome by regulating gut microbiota].},
author = {Yu HC, Meng YY, Wang EK, Yuan JY, Peng Y, Li XB.},
journal = {Zhongguo Zhong Yao Za Zhi},
year = {2024},
doi = {10.19540/j.cnki.cjcmm.20231013.701},
pmid = {38621910}
}
@article{lin399965,
title = {Altered skin microbiome, inflammation, and JAK/STAT signaling in Southeast Asian ichthyosis patients.},
author = {Ho M, Nguyen HN, Van Hoang M, Bui TTT, Vu BQ, Dinh THT, Vo HTM, Blaydon DC, Eldirany SA, Bunick CG, Bui CB.},
journal = {Hum Genomics},
year = {2024},
doi = {10.1186/s40246-024-00603-x},
pmid = {38627868}
}
@article{lin399699,
title = {Modulation of the gut microbiome and Firmicutes phylum reduction by a nutraceutical blend in the obesity mouse model and overweight humans: A double-blind clinical trial.},
author = {Nehmi-Filho V, de Freitas JA, Franco LA, Martins RC, Turri JAO, Santamarina AB, Fonseca JVDS, Sabino EC, Moraes BC, Souza E, Murata GM, Costa SF, Alcantara PS, Otoch JP, Pessoa AFM.},
journal = {Food Sci Nutr},
year = {2024},
doi = {10.1002/fsn3.3927},
pmid = {38628220}
}
@article{lin400133,
title = {Targeted remodeling of the human gut microbiome using Juemingzi (Senna seed extracts).},
author = {Narrowe AB, Lemons JMS, Mahalak KK, Firrman J, den Abbeele PV, Baudot A, Deyaert S, Li Y, Yu LL, Liu L.},
journal = {Front Cell Infect Microbiol},
year = {2024},
doi = {10.3389/fcimb.2024.1296619},
pmid = {38638830}
}
@article{lin399883,
title = {Both viable Bifidobacterium longum subsp. infantis B8762 and heat-killed cells alleviate the intestinal inflammation of DSS-induced IBD rats.},
author = {Li Z, Peng C, Sun Y, Zhang T, Feng C, Zhang W, Huang T, Yao G, Zhang H, He Q.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.03509-23},
pmid = {38647334}
}
@article{lin399573,
title = {Gut symbionts alleviate MASH through a secondary bile acid biosynthetic pathway.},
author = {Nie Q, Luo X, Wang K, Ding Y, Jia S, Zhao Q, Li M, Zhang J, Zhuo Y, Lin J, Guo C, Zhang Z, Liu H, Zeng G, You J, Sun L, Lu H, Ma M, Jia Y, Zheng MH, Pang Y, Qiao J, Jiang C.},
journal = {Cell},
year = {2024},
doi = {10.1016/j.cell.2024.03.034},
pmid = {38653239}
}
@article{lin400073,
title = {Gut microbiota intervention alleviates pulmonary inflammation in broilers exposed to fine particulate matter from broiler house.},
author = {Liu J, Li Y, Shen D, Li X, Wang K, Nagaoka K, Li C.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.02174-23},
pmid = {38656183}
}
@article{lin399774,
title = {Infectious Keratitis: Characterization of Microbial Diversity through Species Richness and Shannon Diversity Index.},
author = {Schiano-Lomoriello D, Abicca I, Contento L, Gabrielli F, Alfonsi C, Di Pietro F, Papa FT, Ballesteros-Sanchez A, Sanchez-Gonzalez JM, Rocha-De-Lossada C, Mazzotta C, Giannaccare G, Bonzano C, Borroni D.},
journal = {Biomolecules},
year = {2024},
doi = {10.3390/biom14040389},
pmid = {38672407}
}
@article{lin399858,
title = {Genetic insights into gut microbiota and risk of prostatitis: a Mendelian randomization study.},
author = {Qin P, He Y, Shao H, Jiang D.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1389715},
pmid = {38680919}
}
@article{lin399848,
title = {Gut microbiome composition and metabolic activity in women with diverticulitis.},
author = {Ma W, Wang Y, Nguyen LH, Mehta RS, Ha J, Bhosle A, Mclver LJ, Song M, Clish CB, Strate LL, Huttenhower C, Chan AT.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-47859-4},
pmid = {38684664}
}
@article{lin400117,
title = {The impact of antibiotics on the gut microbiota of children recovering from watery diarrhoea.},
author = {Le SH, Nguyen Ngoc Minh C, de Sessions PF, Jie S, Tran Thi Hong C, Thwaites GE, Baker S, Pham DT, Chung The H.},
journal = {NPJ Antimicrob Resist},
year = {2024},
doi = {10.1038/s44259-024-00030-x},
pmid = {38686335}
}
@article{lin399619,
title = {BN-BacArena: Bayesian network extension of BacArena for the dynamic simulation of microbial communities.},
author = {Blasco T, Balzerani F, Valcarcel LV, Larranaga P, Bielza C, Francino MP, Rufian-Henares JA, Planes FJ, Perez-Burillo S.},
journal = {Bioinformatics},
year = {2024},
doi = {10.1093/bioinformatics/btae266},
pmid = {38688585}
}
@article{lin399997,
title = {Gut Microbiota Profiles in Myopes and Nonmyopes.},
author = {Omar WEW, Singh G, McBain AJ, Cruickshank F, Radhakrishnan H.},
journal = {Invest Ophthalmol Vis Sci},
year = {2024},
doi = {10.1167/iovs.65.5.2},
pmid = {38691091}
}
@article{lin399906,
title = {The impact of antibiotic exposure on antibiotic resistance gene dynamics in the gut microbiota of inflammatory bowel disease patients.},
author = {Zhang Y, Xue G, Wang F, Zhang J, Xu L, Yu C.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1382332},
pmid = {38694799}
}
@article{lin399620,
title = {Gut microbiome and metabolome to discover pathogenic bacteria and probiotics in ankylosing spondylitis.},
author = {Lai Y, Tang W, Luo X, Zheng H, Zhang Y, Wang M, Yu G, Yang M.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1369116},
pmid = {38711505}
}
@article{lin400022,
title = {The gut microbiome and HLA-B27-associated anterior uveitis: a case-control study.},
author = {Morandi SC, Herzog EL, Munk M, Kreuzer M, Largiader CR, Wolf S, Zinkernagel M, Zysset-Burri DC.},
journal = {J Neuroinflammation},
year = {2024},
doi = {10.1186/s12974-024-03109-4},
pmid = {38715051}
}
@article{lin399829,
title = {Clinical study on the difference in intestinal microecology between patients with preeclampsia and pregnant women at different stages of pregnancy.},
author = {Xie F, Zhang H, Peng M, Jiang T.},
journal = {Acta Biochim Pol},
year = {2024},
doi = {10.3389/abp.2024.12020},
pmid = {38721310}
}
@article{lin400353,
title = {Diet-microbiota associations in gastrointestinal research: a systematic review.},
author = {Duncanson K, Williams G, Hoedt EC, Collins CE, Keely S, Talley NJ.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2350785},
pmid = {38725230}
}
@article{lin400270,
title = {The Mediterranean Diet, Its Microbiome Connections, and Cardiovascular Health: A Narrative Review.},
author = {Abrignani V, Salvo A, Pacinella G, Tuttolomondo A.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25094942},
pmid = {38732161}
}
@article{lin399639,
title = {Intestinal Barrier Impairment Induced by Gut Microbiome and Its Metabolites in School-Age Children with Zinc Deficiency.},
author = {Chai X, Chen X, Yan T, Zhao Q, Hu B, Jiang Z, Guo W, Zhang Y.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16091289},
pmid = {38732540}
}
@article{lin399986,
title = {Huaier Polysaccharide Alleviates Dextran Sulphate Sodium Salt-Induced Colitis by Inhibiting Inflammation and Oxidative Stress, Maintaining the Intestinal Barrier, and Modulating Gut Microbiota.},
author = {Tang YF, Xie WY, Wu HY, Guo HX, Wei FH, Ren WZ, Gao W, Yuan B.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16091368},
pmid = {38732614}
}
@article{lin81317,
title = {Diet-driven differential response of Akkermansia muciniphila modulates pathogen susceptibility.},
author = {Wolter M, Grant ET, Boudaud M, Pudlo NA, Pereira GV, Eaton KA, Martens EC, Desai MS.},
journal = {Mol Syst Biol},
year = {2024},
doi = {10.1038/s44320-024-00036-7},
pmid = {38745106}
}
@article{lin400098,
title = {Nutraceutical blends predict enhanced health via microbiota reshaping improving cytokines and life quality: a Brazilian double-blind randomized trial.},
author = {Santamarina AB, de Freitas JA, Franco LAM, Nehmi-Filho V, Fonseca JV, Martins RC, Turri JA, da Silva BFRB, Fugi BEI, da Fonseca SS, Gusmao AF, Olivieri EHR, de Souza E, Costa S, Sabino EC, Otoch JP, Pessoa AFM.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-61909-3},
pmid = {38750102}
}
@article{lin399931,
title = {The gut-brain-axis: A positive relationship between gut microbial dysbiosis and glioblastoma brain tumour.},
author = {Ishaq HM, Yasin R, Mohammad IS, Fan Y, Li H, Shahzad M, Xu J.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e30494},
pmid = {38756585}
}
@article{lin81316,
title = {Production of deoxycholic acid by low-abundant microbial species is associated with impaired glucose metabolism.},
author = {Wahlstrom A, Brumbaugh A, Sjoland W, Olsson L, Wu H, Henricsson M, Lundqvist A, Makki K, Hazen SL, Bergstrom G, Marschall HU, Fischbach MA, Backhed F.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-48543-3},
pmid = {38769296}
}
@article{lin400109,
title = {Metagenomic insights into the relationship between intestinal flora and residual feed intake of meat ducks.},
author = {Yang C, Dong B, Chen A, Jiang Y, Bai H, Chen G, Chang G, Wang Z.},
journal = {Poult Sci},
year = {2024},
doi = {10.1016/j.psj.2024.103836},
pmid = {38776859}
}
@article{lin399541,
title = {Extracellular vesicles of Bacteroides uniformis induce M1 macrophage polarization and aggravate gut inflammation during weaning.},
author = {Tang W, Ni Z, Wei Y, Hou K, Valencak TG, Wang H.},
journal = {Mucosal Immunol},
year = {2024},
doi = {10.1016/j.mucimm.2024.05.004},
pmid = {38777177}
}
@article{lin399696,
title = {Fecal microbiota transplantation significantly improved respiratory failure of amyotrophic lateral sclerosis.},
author = {Yan J, Chen H, Zhang Y, Peng L, Wang Z, Lan X, Yu S, Yang Y.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2353396},
pmid = {38778483}
}
@article{lin399635,
title = {A low-cost, easy-to-use prototype bioreactor model for the investigation of human gut microbiota: validation using a prebiotic treatment.},
author = {Agrinier AL, Pilon G, Marette A.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1250366},
pmid = {38779503}
}
@article{lin399581,
title = {Bacteroidales-Specific Antimicrobial Genes Can Influence the Selection of the Dominant Fecal Strain of Bacteroides vulgatus and Bacteroides uniformis from the Gastrointestinal Tract Microbial Community.},
author = {Koo H, Morrow CD.},
journal = {Life (Basel)},
year = {2024},
doi = {10.3390/life14050555},
pmid = {38792577}
}
@article{lin399942,
title = {Optimizing Akkermansia muciniphila Isolation and Cultivation: Insights into Gut Microbiota Composition and Potential Growth Promoters in a Chinese Cohort.},
author = {Meng X, Xv C, Lv J, Zhang S, Ma C, Pang X.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12050881},
pmid = {38792711}
}
@article{lin399720,
title = {Exploring the Association between Anxiety, Depression, and Gut Microbiota during Pregnancy: Findings from a Pregnancy Cohort Study in Shijiazhuang, Hebei Province, China.},
author = {Chi R, Li M, Zhang M, Zhang N, Zhang G, Cui L, Ma G.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16101460},
pmid = {38794698}
}
@article{lin400106,
title = {Exploring potential polysaccharide utilization loci involved in the degradation of typical marine seaweed polysaccharides by Bacteroides thetaiotaomicron.},
author = {Yu B, Lu Z, Zhong S, Cheong KL.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1332105},
pmid = {38800758}
}
@article{lin400013,
title = {Exposure to environmental pollutants selects for xenobiotic-degrading functions in the human gut microbiome.},
author = {De Filippis F, Valentino V, Sequino G, Borriello G, Riccardi MG, Pierri B, Cerino P, Pizzolante A, Pasolli E, Esposito M, Limone A, Ercolini D.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-48739-7},
pmid = {38802370}
}
@article{lin399922,
title = {The interaction of gut microbiota, genetic variation, and diet in autism spectrum disorder.},
author = {Liu X.},
journal = {mLife},
year = {2022},
doi = {10.1002/mlf2.12024},
pmid = {38818219}
}
@article{lin400263,
title = {Exploring Novel Antimalarial Compounds Targeting Plasmodium falciparum Enoyl-ACP Reductase: Computational and Experimental Insights.},
author = {A R Oliveira G, G D V Morales B, M O Sousa R, S Pereira S, Antunes D, Caffarena ER, Zanchi FB.},
journal = {ACS Omega},
year = {2024},
doi = {10.1021/acsomega.3c09893},
pmid = {38826533}
}
@article{lin400173,
title = {Spatial recovery of the murine gut microbiota after antibiotics perturbation.},
author = {Taguer M, Xiao J, Crawford R, Shi H, Cheng MP, Citron M, Hannigan GD, Kasper SH.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.00707-24},
pmid = {38832780}
}
@article{lin400059,
title = {Gut Microbial Species and Endotypes Associate with Remission in Ulcerative Colitis Patients Treated with Anti-TNF or Anti-integrin Therapy.},
author = {Tamburini FB, Tripathi A, Gold MP, Yang JC, Biancalani T, McBride JM, Keir ME, Gardenia Study Group.},
journal = {J Crohns Colitis},
year = {2024},
doi = {10.1093/ecco-jcc/jjae084},
pmid = {38836628}
}
@article{lin81328,
title = {Discovery of antimicrobial peptides in the global microbiome with machine learning.},
author = {Santos-Junior CD, Torres MDT, Duan Y, Rodriguez Del Rio A, Schmidt TSB, Chong H, Fullam A, Kuhn M, Zhu C, Houseman A, Somborski J, Vines A, Zhao XM, Bork P, Huerta-Cepas J, de la Fuente-Nunez C, Coelho LP.},
journal = {Cell},
year = {2024},
doi = {10.1016/j.cell.2024.05.013},
pmid = {38843834}
}
@article{lin399579,
title = {Bacteroides uniformis CECT 7771 requires adaptive immunity to improve glucose tolerance but not to prevent body weight gain in diet-induced obese mice.},
author = {Romani-Perez M, Lopez-Almela I, Bullich-Vilarrubias C, Evtoski Z, Benitez-Paez A, Sanz Y.},
journal = {Microbiome},
year = {2024},
doi = {10.1186/s40168-024-01810-3},
pmid = {38845049}
}
@article{lin81361,
title = {Deep-learning-enabled antibiotic discovery through molecular de-extinction.},
author = {Wan F, Torres MDT, Peng J, de la Fuente-Nunez C.},
journal = {Nat Biomed Eng},
year = {2024},
doi = {10.1038/s41551-024-01201-x},
pmid = {38862735}
}
@article{lin399825,
title = {Gallnut tannic acid alleviates gut damage induced by Salmonella pullorum in broilers by enhancing barrier function and modulating microbiota.},
author = {Zou J, Luan H, Xi P, Xue J, Fan J, Zhong X, Zhou X, Song X, Zhao X, Zou Y, Li L, Jia R, Fu Y, Liu Z, Yin Z.},
journal = {Front Vet Sci},
year = {2024},
doi = {10.3389/fvets.2024.1382288},
pmid = {38863452}
}
@article{lin399555,
title = {Levels of 5alpha-reductase gene in intestinal lavage fluid decrease with progression of colorectal cancer.},
author = {Fujii T, Nakagawa Y, Funasaka K, Hirooka Y, Tochio T.},
journal = {J Med Microbiol},
year = {2024},
doi = {10.1099/jmm.0.001834},
pmid = {38865187}
}
@article{lin399672,
title = {Black rice diet alleviates colorectal cancer development through modulating tryptophan metabolism and activating AHR pathway.},
author = {Wang L, Tu YX, Chen L, Yu KC, Wang HK, Yang SQ, Zhang Y, Zhang SJ, Song S, Xu HL, Yin ZC, Feng MQ, Yue JQ, Huang XH, Tang T, Wei SZ, Liang XJ, Chen ZX.},
journal = {Imeta},
year = {2024},
doi = {10.1002/imt2.165},
pmid = {38868519}
}
@article{lin400322,
title = {Impact of cryoprotective agents on human gut microbes and in vitro stabilized artificial gut microbiota communities.},
author = {Alessandri G, Rizzo SM, Mancabelli L, Fontana F, Longhi G, Turroni F, van Sinderen D, Ventura M.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.14509},
pmid = {38878269}
}
@article{lin400378,
title = {Investigation of the relationship between inflammation and microbiota in the intestinal tissue of female and male rats fed with fructose: Modulatory role of metformin.},
author = {Yalcin Bugdayci A, Akarca Dizakar SO, Demirel MA, Omeroglu S, Akar F, Uludag MO.},
journal = {Daru},
year = {2024},
doi = {10.1007/s40199-024-00521-2},
pmid = {38884844}
}
@article{lin399680,
title = {Comparative Binding Study of Gliptins to Bacterial DPP4-like Enzymes for the Treatment of Type 2 Diabetes Mellitus (T2DM).},
author = {Carpio LE, Olivares M, Benitez-Paez A, Serrano-Candelas E, Barigye SJ, Sanz Y, Gozalbes R.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25115744},
pmid = {38891933}
}
@article{lin399963,
title = {A Cross Talking between the Gut Microbiota and Metabolites of Participants in a Confined Environment.},
author = {Song X, Wang Z, Xia Y, Chen Z, Wang G, Yang Y, Zhu B, Ai L, Xu H, Wang C.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16111761},
pmid = {38892694}
}
@article{lin399970,
title = {A Prebiotic Diet Containing Galactooligosaccharides and Polydextrose Produces Dynamic and Reproducible Changes in the Gut Microbial Ecosystem in Male Rats.},
author = {Thompson RS, Bowers SJ, Vargas F, Hopkins S, Kelley T, Gonzalez A, Lowry CA, Dorrestein PC, Vitaterna MH, Turek FW, Knight R, Wright KP, Fleshner M.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16111790},
pmid = {38892722}
}
@article{lin399593,
title = {Alterations in microbiome associated with acute pancreatitis.},
author = {Yazici C, Priyadarshini M, Boulay B, Dai Y, Layden BT.},
journal = {Curr Opin Gastroenterol},
year = {2024},
doi = {10.1097/mog.0000000000001046},
pmid = {38900442}
}
@article{lin399550,
title = {Long-term dietary intervention of the hydrolyzed feather meal on microbiota composition of adult female dogs.},
author = {Balouei F, Armone R, Stefanon B, Randazzo A, Chiofalo B.},
journal = {Res Vet Sci},
year = {2024},
doi = {10.1016/j.rvsc.2024.105340},
pmid = {38924930}
}
@article{lin399544,
title = {3-O-acylated bile acids: disrupters or harmonizers of metabolism?},
author = {Chen R, Chen X, Gao J.},
journal = {Trends Mol Med},
year = {2025},
doi = {10.1016/j.molmed.2024.06.003},
pmid = {38926031}
}
@article{lin400313,
title = {Health-Related Composition and Bioactivity of an Agave Sap/Prickly Pear Juice Beverage.},
author = {Duque-Buitrago LF, Solorzano-Lugo IE, Gonzalez-Vazquez M, Jimenez-Martinez C, Hernandez-Aguirre MA, Osorio-Diaz P, Calderon-Dominguez G, Loera-Castaneda V, Mora-Escobedo R.},
journal = {Molecules},
year = {2024},
doi = {10.3390/molecules29122742},
pmid = {38930808}
}
@article{lin400026,
title = {Comparative analysis of gut microbiota in children with obstructive sleep apnea: assessing the efficacy of 16S rRNA gene sequencing in metabolic function prediction based on weight status.},
author = {Chuang HH, Huang CG, Chou SH, Li HY, Lee CC, Lee LA.},
journal = {Front Endocrinol (Lausanne)},
year = {2024},
doi = {10.3389/fendo.2024.1344152},
pmid = {38948515}
}
@article{lin400087,
title = {Dietary Clostridium butyricum and 25-Hydroxyvitamin D3 modulate bone metabolism of broilers through the gut-brain axis.},
author = {Cao G, Yu Y, Wang H, Yang H, Tao F, Yang S, Liu J, Li Z, Yang C.},
journal = {Poult Sci},
year = {2024},
doi = {10.1016/j.psj.2024.103966},
pmid = {38959642}
}
@article{lin399718,
title = {Gut microbiome dynamics and predictive value in hospitalized COVID-19 patients: a comparative analysis of shallow and deep shotgun sequencing.},
author = {Kopera K, Gromowski T, Wydmanski W, Skonieczna-Zydecka K, Muszynska A, Zielinska K, Wierzbicka-Wos A, Kaczmarczyk M, Kadaj-Lipka R, Cembrowska-Lech D, Januszkiewicz K, Kotfis K, Witkiewicz W, Nalewajska M, Feret W, Marlicz W, Loniewski I, Labaj PP, Rydzewska G, Kosciolek T.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1342749},
pmid = {38962119}
}
@article{lin400293,
title = {Distinct gut flora profile induced by postnatal trans-fat diet in gestationally bisphenol A-exposed rats.},
author = {Zulkifli S, Mohd Nor NS, Sheikh Abdul Kadir SH, Mohd Ranai N, Abdul Khalil K.},
journal = {PLoS One},
year = {2024},
doi = {10.1371/journal.pone.0306741},
pmid = {38980850}
}
@article{lin400164,
title = {The gut-brain axis in individuals with alcohol use disorder: An exploratory study of associations among clinical symptoms, brain morphometry, and the gut microbiome.},
author = {Maki KA, Wallen GR, Bastiaanssen TFS, Hsu LY, Valencia ME, Ramchandani VA, Schwandt ML, Diazgranados N, Cryan JF, Momenan R, Barb JJ.},
journal = {Alcohol Clin Exp Res (Hoboken)},
year = {2024},
doi = {10.1111/acer.15346},
pmid = {38982564}
}
@article{lin399726,
title = {Impact of the gut microbiome on response and toxicity to chemotherapy in advanced esophageal cancer.},
author = {Li N, Gao L, Ge Y, Zhao L, Wang Y, Bai C.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e32770},
pmid = {38984313}
}
@article{lin399799,
title = {Dietary fiber induces a fat preference associated with the gut microbiota.},
author = {Liow YJ, Kamimura I, Umezaki M, Suda W, Takayasu L.},
journal = {PLoS One},
year = {2024},
doi = {10.1371/journal.pone.0305849},
pmid = {38985782}
}
@article{lin400070,
title = {Region-Specific Effects of Metformin on Gut Microbiome and Metabolome in High-Fat Diet-Induced Type 2 Diabetes Mouse Model.},
author = {Cheng M, Jia X, Ren L, Chen S, Wang W, Wang J, Cong B.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25137250},
pmid = {39000356}
}
@article{lin399552,
title = {Sickle Cell Disease and Gut Health: The Influence of Intestinal Parasites and the Microbiome on Angolan Children.},
author = {Delgadinho M, Ginete C, Santos B, de Vasconcelos JN, Arez AP, Brito M.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25137258},
pmid = {39000364}
}
@article{lin399655,
title = {Gut microbes on the risk of advanced adenomas.},
author = {Jing Z, Zheng W, Jianwen S, Hong S, Xiaojian Y, Qiang W, Yunfeng Y, Xinyue W, Shuwen H, Feimin Z.},
journal = {BMC Microbiol},
year = {2024},
doi = {10.1186/s12866-024-03416-z},
pmid = {39026166}
}
@article{lin400014,
title = {A cross-sectional comparison of gut metagenomes between dairy workers and community controls.},
author = {Trinh P, Teichman S, Roberts MC, Rabinowitz PM, Willis AD.},
journal = {BMC Genomics},
year = {2024},
doi = {10.1186/s12864-024-10562-1},
pmid = {39033279}
}
@article{lin400112,
title = {Precision probiotics supplement strategy in aging population based on gut microbiome composition.},
author = {Chuang YF, Fan KC, Su YY, Wu MF, Chiu YL, Liu YC, Lin CC.},
journal = {Brief Bioinform},
year = {2024},
doi = {10.1093/bib/bbae351},
pmid = {39038938}
}
@article{lin399853,
title = {Mediation effect of gut microbiota on the relationship between physical activity and carotid plaque.},
author = {Ouyang W, Tang B, He Y, Wu H, Yang P, Yin L, Li X, Li Y, Huang X.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1432008},
pmid = {39056008}
}
@article{lin399826,
title = {Effect of Palmitoylethanolamide Compared to a Placebo on the Gut Microbiome and Biochemistry in an Overweight Adult Population: A Randomised, Placebo Controlled, Double-Blind Study.},
author = {Batacan R, Briskey D, Bajagai YS, Smith C, Stanley D, Rao A.},
journal = {Biomedicines},
year = {2024},
doi = {10.3390/biomedicines12071620},
pmid = {39062193}
}
@article{lin400068,
title = {Distinct Plasma Metabolomic and Gut Microbiome Profiles after Gestational Diabetes Mellitus Diet Treatment: Implications for Personalized Dietary Interventions.},
author = {Sugino KY, Hernandez TL, Barbour LA, Kofonow JM, Frank DN, Friedman JE.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12071369},
pmid = {39065137}
}
@article{lin400062,
title = {Fecal Microbiota Characteristics in Constipation-Predominant and Mixed-Type Irritable Bowel Syndrome.},
author = {Gryaznova M, Smirnova Y, Burakova I, Morozova P, Lagutina S, Chizhkov P, Korneeva O, Syromyatnikov M.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12071414},
pmid = {39065182}
}
@article{lin400341,
title = {Comparison between 16S rRNA and shotgun sequencing in colorectal cancer, advanced colorectal lesions, and healthy human gut microbiota.},
author = {Bars-Cortina D, Ramon E, Rius-Sansalvador B, Guino E, Garcia-Serrano A, Mach N, Khannous-Lleiffe O, Saus E, Gabaldon T, Ibanez-Sanz G, Rodriguez-Alonso L, Mata A, Garcia-Rodriguez A, Obon-Santacana M, Moreno V.},
journal = {BMC Genomics},
year = {2024},
doi = {10.1186/s12864-024-10621-7},
pmid = {39075388}
}
@article{lin399610,
title = {Astragalus polysaccharides-induced gut microbiota play a predominant role in enhancing of intestinal barrier function of broiler chickens.},
author = {Yang J, Sun Y, Wang Q, Yu S, Li Y, Yao B, Yang X.},
journal = {J Anim Sci Biotechnol},
year = {2024},
doi = {10.1186/s40104-024-01060-1},
pmid = {39103958}
}
@article{lin399630,
title = {Metagenomic analysis demonstrates distinct changes in the gut microbiome of Kawasaki diseases children.},
author = {Han L, Liu X, Lan Y, Hua Y, Fan Z, Li Y.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1416185},
pmid = {39104524}
}
@article{lin399833,
title = {Exploring the relationship between gut microbiota and breast cancer risk in European and East Asian populations using Mendelian randomization.},
author = {Lin W, Gu C, Chen Z, Xue S, Wu H, Zeng L.},
journal = {BMC Cancer},
year = {2024},
doi = {10.1186/s12885-024-12721-9},
pmid = {39118079}
}
@article{lin400401,
title = {Insights into the interplay between gut microbiota and lipid metabolism in the obesity management of canines and felines.},
author = {Li K, Xiao X, Li Y, Lu S, Zi J, Sun X, Xu J, Liu HY, Li X, Song T, Cai D.},
journal = {J Anim Sci Biotechnol},
year = {2024},
doi = {10.1186/s40104-024-01073-w},
pmid = {39118186}
}
@article{lin400351,
title = {Symbiotic biofilms formed by Clostridioides difficile and bacteroides thetaiotaomicron in the presence of vancomycin.},
author = {Yang J, Rui W, Zhong S, Li X, Liu W, Meng L, Li Y, Huang H.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2390133},
pmid = {39132815}
}
@article{lin400262,
title = {Duck gut metagenome reveals the microbiome signatures linked to intestinal regional, temporal development, and rearing condition.},
author = {Ma L, Lyu W, Zeng T, Wang W, Chen Q, Zhao J, Zhang G, Lu L, Yang H, Xiao Y.},
journal = {Imeta},
year = {2024},
doi = {10.1002/imt2.198},
pmid = {39135685}
}
@article{lin399863,
title = {Monascus red pigments alleviate high-fat and high-sugar diet-induced NAFLD in mice by modulating the gut microbiota and metabolites.},
author = {Gao W, Chen X, Wu S, Jin L, Chen X, Mao G, Wan X, Xing W.},
journal = {Food Sci Nutr},
year = {2024},
doi = {10.1002/fsn3.4208},
pmid = {39139961}
}
@article{lin399548,
title = {Integration of microbiome, metabolomics and transcriptome for in-depth understanding of berberine attenuates AOM/DSS-induced colitis-associated colorectal cancer.},
author = {Wang M, Ma Y, Yu G, Zeng B, Yang W, Huang C, Dong Y, Tang B, Wu Z.},
journal = {Biomed Pharmacother},
year = {2024},
doi = {10.1016/j.biopha.2024.117292},
pmid = {39151314}
}
@article{lin399547,
title = {Comparison of different longan polysaccharides during gut Bacteroides fermentation.},
author = {Wang J, Ma Y, Xu X, Huang G, Zhang R, Jia X, Dong L, Deng M, Zhang M, Huang F.},
journal = {Food Chem},
year = {2024},
doi = {10.1016/j.foodchem.2024.140840},
pmid = {39154462}
}
@article{lin399721,
title = {Effects of a 217-km mountain ultramarathon on the gut microbiota of an obese runner: A case report.},
author = {Saragiotto GK, de Oliveira LFV, Scharlack NK, de Oliveira MM, Freire FC, Simabuco FM, Sivieri K, Sartoratto A, Belli T, Antunes AEC.},
journal = {Physiol Rep},
year = {2024},
doi = {10.14814/phy2.70017},
pmid = {39174872}
}
@article{lin399930,
title = {Modeling the effects of prebiotic interventions on luminal and mucosa-associated gut microbiota without and with Clostridium difficile challenge in vitro.},
author = {Wiese M, van der Wurff M, Ouwens A, van Leijden B, Verheij ER, Heerikhuisen M, van der Vossen JMBM.},
journal = {Front Nutr},
year = {2024},
doi = {10.3389/fnut.2024.1403007},
pmid = {39183984}
}
@article{lin399668,
title = {Gut microbial changes in a specialist blister beetle larvae and their nutritional metabolic characteristics.},
author = {Ma J, Fu Z, Yang X, Ming W, Song X, Du C.},
journal = {Ecol Evol},
year = {2024},
doi = {10.1002/ece3.70184},
pmid = {39184568}
}
@article{lin399797,
title = {Gut microbiome related to metabolic diseases after moderate-to-vigorous intensity exercise.},
author = {Yun S, Seo Y, Lee Y, Lee DT.},
journal = {J Exerc Sci Fit},
year = {2024},
doi = {10.1016/j.jesf.2024.07.003},
pmid = {39185003}
}
@article{lin399616,
title = {Bacteroides uniformis Ameliorates Carbohydrate and Lipid Metabolism Disorders in Diabetic Mice by Regulating Bile Acid Metabolism via the Gut-Liver Axis.},
author = {Zhu XX, Zhao CY, Meng XY, Yu XY, Ma LC, Chen TX, Chang C, Chen XY, Zhang Y, Hou B, Cai WW, Du B, Han ZJ, Qiu LY, Sun HJ.},
journal = {Pharmaceuticals (Basel)},
year = {2024},
doi = {10.3390/ph17081015},
pmid = {39204119}
}
@article{lin399539,
title = {Structural elucidation of a capsular polysaccharide from Bacteroides uniformis and its ameliorative impact on DSS-induced colitis in mice.},
author = {Ma C, Zhang S, Renaud SJ, Zhang Q, Qi H, Zhou H, Jin Y, Yu H, Xu Y, Huang H, Hong Y, Li H, Liao Q, Ding F, Qin M, Wang P, Xie Z.},
journal = {Int J Biol Macromol},
year = {2024},
doi = {10.1016/j.ijbiomac.2024.135119},
pmid = {39208897}
}
@article{lin399953,
title = {Integrated Microbiome and Metabolome Analysis Reveals Hypothalamic-Comorbidities Related Signatures in Craniopharyngioma.},
author = {Lin B, Ye Z, Cao Z, Ye Z, Yu Y, Jiang W, Guo S, Melnikov V, Zhou P, Ji C, Shi C, Wu Z, Chen Z, Xu Y, Zhang Q, Ma Z, Qiao N, Chen L, Shou X, Cao X, Zhou X, Zhang L, He M, Wang Y, Ye H, Li Y, Zhang Z, Wang M, Gao R, Zhang Y.},
journal = {Adv Sci (Weinh)},
year = {2024},
doi = {10.1002/advs.202400684},
pmid = {39225628}
}
@article{lin400147,
title = {Next generation probiotics for human health: An emerging perspective.},
author = {Jan T, Negi R, Sharma B, Kumar S, Singh S, Rai AK, Shreaz S, Rustagi S, Chaudhary N, Kaur T, Kour D, Sheikh MA, Kumar K, Yadav AN, Ahmed N.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e35980},
pmid = {39229543}
}
@article{lin81306,
title = {Protection against fibrosis by a bacterial consortium in metabolic dysfunction-associated steatohepatitis and the role of amino acid metabolism.},
author = {Kwan SY, Gonzales KA, Jamal MA, Stevenson HL, Tan L, Lorenzi PL, Futreal PA, Hawk ET, McCormick JB, Fisher-Hoch SP, Jenq RR, Beretta L.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2399260},
pmid = {39239875}
}
@article{lin400308,
title = {Microbial richness and air chemistry in aerosols above the PBL confirm 2,000-km long-distance transport of potential human pathogens.},
author = {Rodo X, Pozdniakova S, Borras S, Matsuki A, Tanimoto H, Armengol MP, Pey I, Vila J, Munoz L, Santamaria S, Canas L, Morgui JA, Fontal A, Curcoll R.},
journal = {Proc Natl Acad Sci U S A},
year = {2024},
doi = {10.1073/pnas.2404191121},
pmid = {39250672}
}
@article{lin399725,
title = {Multi-omics study unravels gut microbiota and metabolites alteration in patients with Wilson's disease.},
author = {Cai X, Dai J, Xie Y, Xu S, Liu M.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-71740-5},
pmid = {39251728}
}
@article{lin399794,
title = {Impact of ginsenoside Rb1 on gut microbiome and associated changes in pharmacokinetics in rats.},
author = {Chen Y, Zhang KX, Liu H, Zhu Y, Bu QY, Song SX, Li YC, Zou H, You XY, Zhao GP.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-72225-1},
pmid = {39256599}
}
@article{lin400321,
title = {Delivery mode and maternal gestational diabetes are important factors in shaping the neonatal initial gut microbiota.},
author = {Shi X, Liu Y, Ma T, Jin H, Zhao F, Sun Z.},
journal = {Front Cell Infect Microbiol},
year = {2024},
doi = {10.3389/fcimb.2024.1397675},
pmid = {39268487}
}
@article{lin399867,
title = {Bacteroides salyersiae Is a Candidate Probiotic Species with Potential Anti-Colitis Properties in the Human Colon: First Evidence from an In Vivo Mouse Model.},
author = {Dai W, Lv Y, Quan M, Ma M, Shang Q, Yu G.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16172918},
pmid = {39275234}
}
@article{lin400143,
title = {Advancements in gene editing technologies for probiotic-enabled disease therapy.},
author = {Wang L, Hu J, Li K, Zhao Y, Zhu M.},
journal = {iScience},
year = {2024},
doi = {10.1016/j.isci.2024.110791},
pmid = {39286511}
}
@article{lin400093,
title = {Exploring the vitamin biosynthesis landscape of the human gut microbiota.},
author = {Tarracchini C, Lugli GA, Mancabelli L, van Sinderen D, Turroni F, Ventura M, Milani C.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.00929-24},
pmid = {39287373}
}
@article{lin400075,
title = {Sugar lowering in fermented apple-pear juice orchestrates a promising metabolic answer in the gut microbiome and intestinal integrity.},
author = {Tlais AZA, Polo A, Granehall L, Filannino P, Vincentini O, De Battistis F, Di Cagno R, Gobbetti M.},
journal = {Curr Res Food Sci},
year = {2024},
doi = {10.1016/j.crfs.2024.100833},
pmid = {39290653}
}
@article{lin399702,
title = {Bacteroides uniformis degrades beta-glucan to promote Lactobacillus johnsonii improving indole-3-lactic acid levels in alleviating colitis.},
author = {Zhang S, Nie Q, Sun Y, Zuo S, Chen C, Li S, Yang J, Hu J, Zhou X, Yu Y, Huang P, Lian L, Xie M, Nie S.},
journal = {Microbiome},
year = {2024},
doi = {10.1186/s40168-024-01896-9},
pmid = {39300532}
}
@article{lin400169,
title = {An integrated strain-level analytic pipeline utilizing longitudinal metagenomic data.},
author = {Zhou B, Wang C, Putzel G, Hu J, Liu M, Wu F, Chen Y, Pironti A, Li H.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.01431-24},
pmid = {39311770}
}
@article{lin400018,
title = {Evidences and perspectives on the association between gut microbiota and sepsis: A bibliometric analysis from 2003 to 2023.},
author = {Hu J, Yao Q, Zhao L.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e37921},
pmid = {39315201}
}
@article{lin399936,
title = {Gut microbiota of children with autism spectrum disorder and healthy siblings: A comparative study.},
author = {Abuljadayel D, Alotibi A, Algothmi K, Basingab F, Alhazmi S, Almuhammadi A, Alharthi A, Alyoubi R, Bahieldin A.},
journal = {Exp Ther Med},
year = {2024},
doi = {10.3892/etm.2024.12719},
pmid = {39328398}
}
@article{lin399900,
title = {Analysis of Serum Bile Acid Profile Characteristics and Identification of New Biomarkers in Lean Metabolic Dysfunction-Associated Fatty Liver Disease Based on LC-MS/MS.},
author = {Wang B, Zhang F, Qiu H, He Y, Shi H, Zhu Y.},
journal = {Clin Med Insights Endocrinol Diabetes},
year = {2024},
doi = {10.1177/11795514241282253},
pmid = {39328906}
}
@article{lin399982,
title = {Functional Muffins Exert Bifidogenic Effects along with Highly Product-Specific Effects on the Human Gut Microbiota Ex Vivo.},
author = {Deyaert S, Poppe J, Dai Vu L, Baudot A, Bubeck S, Bayne T, Krishnan K, Giusto M, Moltz S, Van den Abbeele P.},
journal = {Metabolites},
year = {2024},
doi = {10.3390/metabo14090497},
pmid = {39330504}
}
@article{lin399927,
title = {Altered gut microbial profile accompanied by abnormal short chain fatty acid metabolism exacerbates nonalcoholic fatty liver disease progression.},
author = {Yang C, Wu J, Yang L, Hu Q, Li L, Yang Y, Hu J, Pan D, Zhao Q.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-72909-8},
pmid = {39333290}
}
@article{lin400089,
title = {In Vitro Human Gastrointestinal Digestibility and Colonic Fermentation of Wheat Sourdough and Yeast Breads.},
author = {Martinez Tuppia C, Rezaei MN, Machuron F, Duysburgh C, Ghyselinck J, Marzorati M, Koper JEB, Monnet C, Bosco N.},
journal = {Foods},
year = {2024},
doi = {10.3390/foods13183014},
pmid = {39335943}
}
@article{lin399690,
title = {Bacteraemia Associated with Bilophila wadsworthia: A Rare Case Presentation from Hungary.},
author = {Kovacs R, Arokszallasi T, Bozo A, Jakab A, Babel KS, Heja M, Kovacs KB, Balazs B, Vitalis E, Majoros L, Toth Z.},
journal = {Pathogens},
year = {2024},
doi = {10.3390/pathogens13090749},
pmid = {39338940}
}
@article{lin399792,
title = {Nutraceutical Capsules LL1 and Silymarin Supplementation Act on Mood and Sleep Quality Perception by Microbiota-Gut-Brain Axis: A Pilot Clinical Study.},
author = {Santamarina AB, Nehmi Filho V, Freitas JA, Franco LAM, Fonseca JV, Martins RC, Turri JAO, Silva BFRBD, Gusmao AF, Olivieri EHR, Otoch JP, Pessoa AFM.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16183049},
pmid = {39339649}
}
@article{lin400366,
title = {Yoyo Dieting, Post-Obesity Weight Loss, and Their Relationship with Gut Health.},
author = {Phuong-Nguyen K, McGee SL, Aston-Mourney K, Mcneill BA, Mahmood MQ, Rivera LR.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16183170},
pmid = {39339770}
}
@article{lin400085,
title = {Microbially-produced folate forms support the growth of Roseburia intestinalis but not its competitive fitness in fecal batch fermentations.},
author = {Kundra P, Geirnaert A, Pugin B, Pluss S, Kariluoto S, Lacroix C, Greppi A.},
journal = {BMC Microbiol},
year = {2024},
doi = {10.1186/s12866-024-03528-6},
pmid = {39342101}
}
@article{lin400306,
title = {Supplementation with Lactobacillus helveticus NS8 alleviated behavioral, neural, endocrine, and microbiota abnormalities in an endogenous rat model of depression.},
author = {Alatan H, Liang S, Shimodaira Y, Wu X, Hu X, Wang T, Luo J, Iijima K, Jin F.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1407620},
pmid = {39346901}
}
@article{lin400232,
title = {Can longer lifespan be associated with gut microbiota involvement in lipid metabolism?},
author = {Sardzikova S, Gajewska M, Galka N, Stefanek M, Balaz A, Garaiova M, Holic R, Swiderek W, Soltys K.},
journal = {FEMS Microbiol Ecol},
year = {2024},
doi = {10.1093/femsec/fiae135},
pmid = {39354675}
}
@article{lin400203,
title = {Rapid design of bacteriophage cocktails to suppress the burden and virulence of gut-resident carbapenem-resistant Klebsiella pneumoniae.},
author = {Rotman E, McClure S, Glazier J, Fuerte-Stone J, Foldi J, Erani A, McGann R, Arnold J, Lin H, Valaitis S, Mimee M.},
journal = {Cell Host Microbe},
year = {2024},
doi = {10.1016/j.chom.2024.09.004},
pmid = {39368473}
}
@article{lin399606,
title = {Identification of age-associated microbial changes via long-read 16S sequencing.},
author = {Toh KY, Toh TS, Chua KP, Rajakumar P, Lee JWJ, Chong CW.},
journal = {Gut Pathog},
year = {2024},
doi = {10.1186/s13099-024-00650-8},
pmid = {39369250}
}
@article{lin399735,
title = {New connections of medication use and polypharmacy with the gut microbiota composition and functional potential in a large population.},
author = {Larsson A, Ericson U, Jonsson D, Miari M, Athanasiadis P, Baldanzi G, Brunkwall L, Hellstrand S, Klinge B, Melander O, Nilsson PM, Fall T, Maziarz M, Orho-Melander M.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-71571-4},
pmid = {39390025}
}
@article{lin400286,
title = {A functionally augmented carbohydrate utilization locus from herbivore gut microbiota fueled by dietary beta-glucans.},
author = {Mandelli F, Martins MP, Chinaglia M, Lima EA, Morais MAB, Lima TB, Cabral L, Pirolla RAS, Fuzita FJ, Paixao DAA, Andrade MO, Wolf LD, Vieira PS, Persinoti GF, Murakami MT.},
journal = {NPJ Biofilms Microbiomes},
year = {2024},
doi = {10.1038/s41522-024-00578-6},
pmid = {39397008}
}
@article{lin400148,
title = {Microbiota modulation by teriflunomide therapy in people with multiple sclerosis: An observational case-control study.},
author = {Moles L, Otaegui-Chivite A, Gorostidi-Aicua M, Romarate L, Mendiburu I, Crespillo-Velasco H, Alvarez de Arcaya A, Ferreira E, Arruti M, Castillo-Trivino T, Otaegui D.},
journal = {Neurotherapeutics},
year = {2024},
doi = {10.1016/j.neurot.2024.e00457},
pmid = {39406600}
}
@article{lin400227,
title = {The effect of antibiotics on the intestinal microbiota in children - a systematic review.},
author = {Wurm J, Curtis N, Zimmermann P.},
journal = {Front Allergy},
year = {2024},
doi = {10.3389/falgy.2024.1458688},
pmid = {39435363}
}
@article{lin399530,
title = {Akkermansia muciniphila Growth Promoted by Lychee Major Flavonoid through Bacteroides uniformis Metabolism.},
author = {Tang S, Xu C, Zhou Y, Shen Y, Zeng Q, Su D.},
journal = {J Agric Food Chem},
year = {2024},
doi = {10.1021/acs.jafc.4c07429},
pmid = {39436683}
}
@article{lin399715,
title = {Human Herpesvirus-6B Infection and Alterations of Gut Microbiome in Patients with Fibromyalgia: A Pilot Study.},
author = {Ievina L, Fomins N, Gudra D, Kenina V, Vilmane A, Gravelsina S, Rasa-Dzelzkaleja S, Murovska M, Fridmanis D, Nora-Krukle Z.},
journal = {Biomolecules},
year = {2024},
doi = {10.3390/biom14101291},
pmid = {39456224}
}
@article{lin400395,
title = {Exclusive enteral nutrition initiates individual protective microbiome changes to induce remission in pediatric Crohn's disease.},
author = {Hacker D, Siebert K, Smith BJ, Kohler N, Riva A, Mahapatra A, Heimes H, Nie J, Metwaly A, Holz H, Manz Q, De Zen F, Heetmeyer J, Socas K, Le Thi G, Meng C, Kleigrewe K, Pauling JK, Neuhaus K, List M, Pollard KS, Schwerd T, Haller D.},
journal = {Cell Host Microbe},
year = {2024},
doi = {10.1016/j.chom.2024.10.001},
pmid = {39461337}
}
@article{lin399764,
title = {Fecal microbial marker panel for aiding diagnosis of autism spectrum disorders.},
author = {Wan Y, Wong OWH, Tun HM, Su Q, Xu Z, Tang W, Ma SL, Chan S, Chan FKL, Ng SC.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2418984},
pmid = {39468837}
}
@article{lin400268,
title = {Eubacterium siraeum suppresses fat deposition via decreasing the tyrosine-mediated PI3K/AKT signaling pathway in high-fat diet-induced obesity.},
author = {Lai X, Liu S, Miao J, Shen R, Wang Z, Zhang Z, Gong H, Li M, Pan Y, Wang Q.},
journal = {Microbiome},
year = {2024},
doi = {10.1186/s40168-024-01944-4},
pmid = {39478562}
}
@article{lin400202,
title = {Comparative time-series analyses of gut microbiome profiles in genetically and chemically induced lupus-prone mice and the impacts of fecal transplantation.},
author = {Chatthanathon P, Leelahavanichkul A, Cheibchalard T, Wilantho A, Hirankarn N, Somboonna N.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-77672-4},
pmid = {39487198}
}
@article{lin399543,
title = {Exploring bacterial metabolites in microbe-human host dialogue and their therapeutic potential in Alzheimer's diseases.},
author = {Singh SD, Bharali P, Nagamani S.},
journal = {Mol Divers},
year = {2025},
doi = {10.1007/s11030-024-11028-y},
pmid = {39499489}
}
@article{lin400201,
title = {The gut microbiome is associated with susceptibility to febrile malaria in Malian children.},
author = {Van Den Ham KM, Bower LK, Li S, Lorenzi H, Doumbo S, Doumtabe D, Kayentao K, Ongoiba A, Traore B, Crompton PD, Schmidt NW.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-52953-8},
pmid = {39500866}
}
@article{lin399553,
title = {Unveiling the causal effects of gut microbiome on trimethylamine N-oxide: evidence from Mendelian randomization.},
author = {Yu Y, Yin Y, Deng J, Yang X, Bai S, Yu R.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1465455},
pmid = {39526138}
}
@article{lin399698,
title = {The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities.},
author = {Dmitrijeva M, Ruscheweyh HJ, Feer L, Li K, Miravet-Verde S, Sintsova A, Mende DR, Zeller G, Sunagawa S.},
journal = {Nucleic Acids Res},
year = {2025},
doi = {10.1093/nar/gkae1004},
pmid = {39526369}
}
@article{lin399865,
title = {Adversarial regularized autoencoder graph neural network for microbe-disease associations prediction.},
author = {He L, Zou Q, Dai Q, Cheng S, Wang Y.},
journal = {Brief Bioinform},
year = {2024},
doi = {10.1093/bib/bbae584},
pmid = {39528423}
}
@article{lin400122,
title = {Immunoglobulin-coating patterns reveal altered humoral responses to gut bacteria in pediatric cow milk allergies.},
author = {Augustine T, Murugesan S, Badri F, Gentilcore G, Grivel JC, Akobeng A, Elawad M, Adeli M, Al Khodor S, van Panhuys N.},
journal = {J Transl Med},
year = {2024},
doi = {10.1186/s12967-024-05850-z},
pmid = {39533360}
}
@article{lin399703,
title = {Modulating the gut microbiota in Crohn's disease: a pilot study on the impact of a plant-based diet with DNA-based monitoring.},
author = {Ostergaard SK, Cetin Z, Rasmussen HH, Laerke HN, Holst M, Lauridsen C, Nielsen JL.},
journal = {Front Nutr},
year = {2024},
doi = {10.3389/fnut.2024.1502967},
pmid = {39545044}
}
@article{lin399748,
title = {Alterations of Gut Microbiome in Patients with Colorectal Advanced Adenoma by Metagenomic Analyses.},
author = {Xiang J, Chai N, Li L, Hao X, Linghu E.},
journal = {Turk J Gastroenterol},
year = {2024},
doi = {10.5152/tjg.2024.24294},
pmid = {39549023}
}
@article{lin399693,
title = {[Bacteremia due to strict anaerobes].},
author = {Pina Delgado C, Bolanos Rivero M, Carmona Tello MC, Ramirez Estupinan CJ, Hernandez Cabrera PM, de Miguel Martinez I.},
journal = {Rev Esp Quimioter},
year = {2025},
doi = {10.37201/req/063.2024},
pmid = {39552499}
}
@article{lin400050,
title = {Acarbose impairs gut Bacteroides growth by targeting intracellular glucosidases.},
author = {Brown HA, Morris AL, Pudlo NA, Hopkins AE, Martens EC, Golob JL, Koropatkin NM.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.01506-24},
pmid = {39565129}
}
@article{lin399533,
title = {Bacteroides uniformis ameliorates pro-inflammatory diet-exacerbated colitis by targeting endoplasmic reticulum stress-mediated ferroptosis.},
author = {Liu C, Liu L, Tian Z, Zhan S, Qiu Y, Li M, Li T, Mao R, Zhang S, Chen M, Zeng Z, Zhuang X.},
journal = {J Adv Res},
year = {2025},
doi = {10.1016/j.jare.2024.11.025},
pmid = {39566817}
}
@article{lin399615,
title = {Study of the Gut Microbiome in Patients with Psoriatic Arthritis.},
author = {Amorim GM, Ricardo Werner Castro G, Carneiro S.},
journal = {Eur J Rheumatol},
year = {2024},
doi = {10.5152/eurjrheum.2024.23080},
pmid = {39576066}
}
@article{lin399817,
title = {Exploring bacterial key genes and therapeutic agents for breast cancer among the Ghanaian female population: Insights from In Silico analyses.},
author = {Kibria MK, Ali MA, Mollah MNH.},
journal = {PLoS One},
year = {2024},
doi = {10.1371/journal.pone.0312493},
pmid = {39585882}
}
@article{lin400195,
title = {miMatch: a microbial metabolic background matching tool for mitigating host confounding in metagenomics research.},
author = {Liu L, Cao S, Lin W, Gao Z, Yang L, Zhu L, Yang B, Zhang G, Zhu R, Wu D.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2434029},
pmid = {39601293}
}
@article{lin399591,
title = {Fecal microbiome composition in neonates with or without urinary tract infection.},
author = {Bahat H, Paret M, Uzan A, Klainer H, Sharon E, Turjeman S, Koren O, Goldman M, Youngster I.},
journal = {Pediatr Nephrol},
year = {2025},
doi = {10.1007/s00467-024-06612-1},
pmid = {39607509}
}
@article{lin81305,
title = {Lacticaseibacillus rhamnosus LRJ-1 alleviates constipation through promoting gut Bacteroides-derived gamma-aminobutyric acid production.},
author = {Xia T, Huang F, Yun F, Liu Y, Wang T, Wang S, Jin S, Ma X, Wang W, He J, Teng K, Zhong J.},
journal = {Curr Res Food Sci},
year = {2024},
doi = {10.1016/j.crfs.2024.100924},
pmid = {39619641}
}
@article{lin399683,
title = {Exploring the dynamics of gut microbiota, antibiotic resistance, and chemotherapy impact in acute leukemia patients: A comprehensive metagenomic analysis.},
author = {Luo Y, Sheikh TMM, Li X, Yuan Y, Yao F, Wang M, Guo X, Wu J, Shafiq M, Xie Q, Jiao X.},
journal = {Virulence},
year = {2024},
doi = {10.1080/21505594.2024.2428843},
pmid = {39620486}
}
@article{lin81273,
title = {Carotenoid productivity in human intestinal bacteria Eubacterium limosum and Leuconostoc mesenteroides with functional analysis of their carotenoid biosynthesis genes.},
author = {Matsumoto W, Takemura M, Nanaura H, Ami Y, Maoka T, Shindo K, Kurihara S, Misawa N.},
journal = {Eng Microbiol},
year = {2024},
doi = {10.1016/j.engmic.2024.100147},
pmid = {39629323}
}
@article{lin399971,
title = {Extreme drought shapes the gut microbiota composition and function of common cranes (Grus grus) wintering in Poyang Lake.},
author = {Wang C, Zhang C, Cai H, Zhu Y, Sun J, Liu W, Wang Z, Li Y.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1489906},
pmid = {39633809}
}
@article{lin400115,
title = {Characteristics of putative keystones in the healthy adult human gut microbiota as determined by correlation network analysis.},
author = {Bauchinger F, Seki D, Berry D.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1454634},
pmid = {39633812}
}
@article{lin399910,
title = {Analysis of early childhood intestinal microbial dynamics in a continuous-flow bioreactor.},
author = {Granato A, Renwick S, Yau C, Kong T, Daigneault MC, Knip M, DIABIMMUNE Study Group, Allen-Vercoe E, Danska JS.},
journal = {Microbiome},
year = {2024},
doi = {10.1186/s40168-024-01976-w},
pmid = {39639333}
}
@article{lin400126,
title = {Immunogenic peptides putatively from intratumor microbes: Opportunities for colorectal cancer treatment.},
author = {Guan X, Bu F, Fu Y, Zhang H, Xiang H, Chen X, Chen T, Wu X, Wu K, Liu L, Dong X.},
journal = {iScience},
year = {2024},
doi = {10.1016/j.isci.2024.111338},
pmid = {39640572}
}
@article{lin399542,
title = {Integrated Multi-Omics Analyses Reveal Lipid Metabolic Signature in Osteoarthritis.},
author = {Wang Y, Zeng T, Tang D, Cui H, Wan Y, Tang H.},
journal = {J Mol Biol},
year = {2025},
doi = {10.1016/j.jmb.2024.168888},
pmid = {39643156}
}
@article{lin400031,
title = {Bifidobacterium species serve as key gut microbiome regulators after intervention in gestational diabetes mellitus.},
author = {Cui Z, Wang S, Niu J, Ma J, Yang H.},
journal = {BMC Microbiol},
year = {2024},
doi = {10.1186/s12866-024-03680-z},
pmid = {39643877}
}
@article{lin399712,
title = {Integrative multiomics analysis reveals association of gut microbiota and its metabolites with susceptibility to keloids.},
author = {Li D, Li M, Gao H, Hu K, Xie R, Fan J, Huang M, Liao C, Han C, Guo Z, Chen X, Li M.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1475984},
pmid = {39669776}
}
@article{lin399594,
title = {Dynamic Shifts in Antibiotic Residues and Gut Microbiome Following Tilmicosin Administration to Silkie Chickens.},
author = {Liang Q, Xie C, Gebreselase HB, Yuan Y, He J, Xie L, Luo C, Ji J.},
journal = {Animals (Basel)},
year = {2024},
doi = {10.3390/ani14233428},
pmid = {39682393}
}
@article{lin399964,
title = {Carotenoids from Halophilic Archaea: A Novel Approach to Improve Egg Quality and Cecal Microbiota in Laying Hens.},
author = {Dou X, Zhang G, Tang H, Chen X, Chen B, Mei Y, Jiao H, Ren M.},
journal = {Animals (Basel)},
year = {2024},
doi = {10.3390/ani14233470},
pmid = {39682435}
}
@article{lin399669,
title = {Gut Microbiota-microRNA Interactions and Obesity Pathophysiology: A Systematic Review of Integrated Studies.},
author = {Azari H, George M, Albracht-Schulte K.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms252312836},
pmid = {39684547}
}
@article{lin400176,
title = {Circulating Cell-Free Microbial DNA Signatures and Plasma Soluble CD14 Level Are Associated with Clinical Outcomes of Anti-PD-1 Therapy in Advanced Melanoma Patients.},
author = {Drymel B, Tomela K, Galus L, Olejnik-Schmidt A, Mackiewicz J, Kaczmarek M, Mackiewicz A, Schmidt M.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms252312982},
pmid = {39684692}
}
@article{lin399879,
title = {Machine learning analysis of sex and menopausal differences in the gut microbiome in the HELIUS study.},
author = {Vriend EMC, Galenkamp H, Herrema H, Nieuwdorp M, van den Born BH, Verhaar BJH.},
journal = {NPJ Biofilms Microbiomes},
year = {2024},
doi = {10.1038/s41522-024-00628-z},
pmid = {39702650}
}
@article{lin399845,
title = {Symbiotic microbial population composition of Apolygus lucorum under temperature and pesticide pressures.},
author = {Ma M, Xue H, Zhu X, Wang L, Niu L, Luo J, Cui J, Gao X.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1485708},
pmid = {39703707}
}
@article{lin399535,
title = {Gut microbiome and obesity in late adolescence: A case-control study in "Children of 1997" birth cohort.},
author = {He B, Xu S, Schooling CM, Leung GM, Ho JWK, Au Yeung SL.},
journal = {Ann Epidemiol},
year = {2025},
doi = {10.1016/j.annepidem.2024.12.009},
pmid = {39710013}
}
@article{lin400097,
title = {Bacteroides thetaiotaomicron enhances oxidative stress tolerance through rhamnose-dependent mechanisms.},
author = {Xie S, Ma J, Lu Z.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1505218},
pmid = {39723138}
}
@article{lin399763,
title = {A Comprehensive Metabolomic and Microbial Analysis Following Dietary Amino Acid Reduction in Mice.},
author = {Al-Ishaq RK, Ferrara CR, Stephan N, Krumsiek J, Suhre K, Montrose DC.},
journal = {Metabolites},
year = {2024},
doi = {10.3390/metabo14120706},
pmid = {39728487}
}
@article{lin399897,
title = {Systemic Granulomatosis in the Meagre Argyrosomus regius: Fishing for a Plausible Etiology.},
author = {Murgia C, Cubeddu T, Burrai GP, Alberti A, Bertolotti L, Colitti B, Prearo M, Pastorino P, Esposito G, Mandrioli L, Barbera G, Sanna MA, Polinas M, Soto E, Antuofermo E.},
journal = {Vet Sci},
year = {2024},
doi = {10.3390/vetsci11120597},
pmid = {39728937}
}
@article{lin399801,
title = {Gut microbiota prevents small intestinal tumor formation due to bile acids in gnotobiotic mice.},
author = {Wortmann E, Wylensek D, Basic M, Hermeling S, Bleich A, Haller D, Tolba R, Liebisch G, Janssen KP, Clavel T.},
journal = {Microbiome Res Rep},
year = {2024},
doi = {10.20517/mrr.2024.20},
pmid = {39741948}
}
@article{lin399589,
title = {MetOrigin 2.0: Advancing the discovery of microbial metabolites and their origins.},
author = {Yu G, Xu C, Wang X, Ju F, Fu J, Ni Y.},
journal = {Imeta},
year = {2024},
doi = {10.1002/imt2.246},
pmid = {39742299}
}
@article{lin399596,
title = {Large Douglas Abscess with Distinctive Bilateral Salpingitis in a Young Virginal Woman 6 Months Following Small Bowel Perforation at the Level of the Jejunojejunostomy After Roux-en-Y Gastric Bypass: A Case Report.},
author = {Verta S, Brambs CE, Christmann C.},
journal = {Int J Womens Health},
year = {2024},
doi = {10.2147/ijwh.s492026},
pmid = {39742344}
}
@article{lin400331,
title = {The global RNA-binding protein RbpB is a regulator of polysaccharide utilization in Bacteroides thetaiotaomicron.},
author = {Ruttiger AS, Ryan D, Spiga L, Lamm-Schmidt V, Prezza G, Reichardt S, Langford M, Barquist L, Faber F, Zhu W, Westermann AJ.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-024-55383-8},
pmid = {39747016}
}
@article{lin400128,
title = {Gut microbiota and blood biomarkers in IBD-Related arthritis: insights from mendelian randomization.},
author = {Yang W, Cui M, Yang P, Liu C, Han X, Yao W, Li Z.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-024-84116-6},
pmid = {39747467}
}
@article{lin399580,
title = {Sex-dependent modulation of T and NK cells and gut microbiome by low sodium diet in patients with primary aldosteronism.},
author = {Nowotny HF, Zheng T, Seiter TM, Ju J, Schneider H, Kroiss M, Sarkis AL, Sturm L, Britz V, Lechner A, Potzel AL, Kunz S, Bidlingmaier M, Neuhaus K, Gottschlich A, Kobold S, Reisch N, Schirmer M, Reincke M, Adolf C.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1428054},
pmid = {39749333}
}
@article{lin399937,
title = {Effects of data transformation and model selection on feature importance in microbiome classification data.},
author = {Karwowska Z, Aasmets O, Estonian Biobank research team, Kosciolek T, Org E.},
journal = {Microbiome},
year = {2025},
doi = {10.1186/s40168-024-01996-6},
pmid = {39754220}
}
@article{lin400010,
title = {Cell free supernatants of Bifidobacterium adolescentis and Bifidobacterium longum suppress the tumor growth in colorectal cancer organoid model.},
author = {Kim MJ, Song MH, Ji YS, Park JW, Shin YK, Kim SC, Kim G, Cho B, Park H, Ku JL, Jeong SY.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-024-83048-5},
pmid = {39762302}
}
@article{lin399612,
title = {alpha-Cyclodextrin supplementation improves endurance exercise performance and reduces post-exercise fatigue in human males: a randomized, double-blind, placebo-controlled, parallel-group study.},
author = {Onishi M, Nakamura T, Kano C, Hirota T, Fukuda S, Morita H.},
journal = {Biosci Microbiota Food Health},
year = {2025},
doi = {10.12938/bmfh.2024-062},
pmid = {39764495}
}
@article{lin399633,
title = {Changes in Human Colonic Microbiota Promoted by Synbiotic Açai Juice Composed of Gluco-Oligosaccharides, Dextran, and Bifidobacterium breve NRRL B-41408.},
author = {Reges BM, da Silva Oliveira FA, Fonteles TV, Rodrigues S.},
journal = {Foods},
year = {2024},
doi = {10.3390/foods13244121},
pmid = {39767062}
}
@article{lin399806,
title = {Gut Microbial Dysbiosis and Implications in Solid Organ Transplantation.},
author = {Medina CK, Aykut B.},
journal = {Biomedicines},
year = {2024},
doi = {10.3390/biomedicines12122792},
pmid = {39767699}
}
@article{lin400142,
title = {Bile Acids in Inflammatory Bowel Disease: From Pathophysiology to Treatment.},
author = {Bai SH, Chandnani A, Cao S.},
journal = {Biomedicines},
year = {2024},
doi = {10.3390/biomedicines12122910},
pmid = {39767816}
}
@article{lin400362,
title = {Lactobacillus sp. for the Attenuation of Metabolic Dysfunction-Associated Steatotic Liver Disease in Mice.},
author = {Olotu T, Ferrell JM.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12122488},
pmid = {39770690}
}
@article{lin399605,
title = {Identifying fecal microbiota signatures of colorectal cancer in a Vietnamese cohort.},
author = {Nhung PTT, Le HTT, Nguyen QH, Huyen DT, Quyen DV, Song LH, Van Thuan T, Tran TTT.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1388740},
pmid = {39777151}
}
@article{lin399585,
title = {Correlation Between Gastroesophageal Reflux Disease and Small Intestinal Bacterial Overgrowth: Analysis of Intestinal Microbiome and Metabolic Characteristics.},
author = {Wang ZT, Tan WT, Huang JL, Zhang PF, Li Q, Wang MM, Meng MM, Su H, Guo CM, Liu H.},
journal = {J Inflamm Res},
year = {2025},
doi = {10.2147/jir.s487185},
pmid = {39780983}
}
@article{lin400404,
title = {Targeted inhibition of Gus-expressing Enterococcus faecalis to promote intestinal stem cell and epithelial renovation contributes to the relief of irinotecan chemotoxicity by dehydrodiisoeugenol.},
author = {Gao R, Yue B, Lv C, Geng X, Yu Z, Wang H, Zhang B, Ai F, Wang Z, Liu D, Wang Z, Chen K, Dou W.},
journal = {Acta Pharm Sin B},
year = {2024},
doi = {10.1016/j.apsb.2024.09.018},
pmid = {39807321}
}
@article{lin81314,
title = {Selective utilization of medicinal polysaccharides by human gut Bacteroides and Parabacteroides species.},
author = {Qu Z, Liu H, Yang J, Zheng L, Huang J, Wang Z, Xie C, Zuo W, Xia X, Sun L, Zhou Y, Xie Y, Lu J, Zhu Y, Yu L, Liu L, Zhou H, Dai L, Leung EL.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-55845-7},
pmid = {39809740}
}
@article{lin400264,
title = {Microbial succinate promotes the response to metformin by upregulating secretory immunoglobulin a in intestinal immunity.},
author = {Zhang Y, Wang A, Zhao W, Qin J, Zhang Y, Liu B, Yao C, Long J, Yuan M, Yan D.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2450871},
pmid = {39812329}
}
@article{lin399746,
title = {Association between the ABCC11 gene polymorphism-determined earwax properties and external auditory canal microbiota in healthy adults.},
author = {Amari Y, Hosonuma M, Mizukami T, Isobe J, Azetsu Y, Funayama E, Maruyama Y, Tsurui T, Tajima K, Sasaki A, Yamazaki Y, Nakano R, Sano Y, Ishida A, Nakanishi T, Mochizuki S, Yoshizawa Y, Kumagai S, Yasuhara S, Ryu K, Oguchi T, Kuramasu A, Yoshimura K, Sambe T, Kobayashi S, Uchida N.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.01698-24},
pmid = {39817749}
}
@article{lin399874,
title = {Effects of replacing soybean meal with cottonseed meal on growth performance, carcass trait, intestinal development and intestinal microbiota of broiler chickens.},
author = {Yan L, An S, Lv X, Lv Z, Zhang B, Choct M, Guo Y, Wang Z, Yan B, Li Y.},
journal = {Poult Sci},
year = {2025},
doi = {10.1016/j.psj.2024.104653},
pmid = {39823832}
}
@article{lin400323,
title = {Subspecies phylogeny in the human gut revealed by co-evolutionary constraints across the bacterial kingdom.},
author = {Doran BA, Chen RY, Giba H, Behera V, Barat B, Sundararajan A, Lin H, Sidebottom A, Pamer EG, Raman AS.},
journal = {Cell Syst},
year = {2025},
doi = {10.1016/j.cels.2024.12.008},
pmid = {39826551}
}
@article{lin399950,
title = {Synthetic beta-d-Glucuronides: Substrates for Exploring Glucuronide Degradation by Human Gut Bacteria.},
author = {Gorecka A, Schacht H, Fraser MK, Teriosina A, London JA, Barsukov IL, Powell AK, Cartmell A, Stachulski AV, Yates EA.},
journal = {ACS Omega},
year = {2025},
doi = {10.1021/acsomega.4c09036},
pmid = {39829562}
}
@article{lin399934,
title = {Integrating 16S rDNA and metabolomics to uncover the therapeutic mechanism of electroacupuncture in type 2 diabetic rats.},
author = {Yue Z, Xiang W, Duping D, Yuanyuan G, Xuanyi C, Juan L, Xiaojuan H.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1436911},
pmid = {39834366}
}
@article{lin400066,
title = {Lactobacillus reuteri ZJ617 attenuates metabolic syndrome via microbiota-derived spermidine.},
author = {Ma Y, Zhong Y, Tang W, Valencak TG, Liu J, Deng Z, Mao J, Liu D, Wang S, Wang Y, Wang H.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-56105-4},
pmid = {39837844}
}
@article{lin399875,
title = {Beyond the Brain: Attention Deficit/Hyperactivity Disorder and the Gut-Brain Axis.},
author = {Gandhi DN, Pande DN, Harikrishna A, Advilkar A, Basavan I, Ansari R.},
journal = {Cureus},
year = {2024},
doi = {10.7759/cureus.76291},
pmid = {39850178}
}
@article{lin399660,
title = {MiMeJF: Application of Coupled Matrix and Tensor Factorization (CMTF) for Enhanced Microbiome-Metabolome Multi-Omic Analysis.},
author = {Ou Z, Fu X, Norback D, Lin R, Wen J, Sun Y.},
journal = {Metabolites},
year = {2025},
doi = {10.3390/metabo15010051},
pmid = {39852393}
}
@article{lin399877,
title = {Associations Between the Gut Microbiome, Inflammation, and Cardiovascular Profiles in People With Human Immunodeficiency Virus.},
author = {MacCann R, Li J, Leon AAG, Negi R, Alalwan D, Tinago W, McGettrick P, Cotter AG, Landay A, Sabin C, O'Toole PW, Mallon PWG, Understanding the Pathology of Comorbid Disease in HIV-Infected Individuals (HIV UPBEAT) Study Group
.},
journal = {J Infect Dis},
year = {2025},
doi = {10.1093/infdis/jiaf043},
pmid = {39854172}
}
@article{lin400194,
title = {Longitudinal phage-bacteria dynamics in the early life gut microbiome.},
author = {Tisza MJ, Lloyd RE, Hoffman K, Smith DP, Rewers M, Javornik Cregeen SJ, Petrosino JF.},
journal = {Nat Microbiol},
year = {2025},
doi = {10.1038/s41564-024-01906-4},
pmid = {39856391}
}
@article{lin399862,
title = {Nutritional and Microbiome Effects of a Partial Substitution of Poultry Meat with Hydrolyzed Feather Meal in Dog Diets.},
author = {Balouei F, Stefanon B, Armone R, Randazzo A, Chiofalo B.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13010121},
pmid = {39858889}
}
@article{lin399816,
title = {Beneficial Effects of In Vitro Reconstructed Human Gut Microbiota by Ginseng Extract Fermentation on Intestinal Cell Lines.},
author = {Finazzi M, Bovio F, Forcella M, Lasagni M, Fusi P, Di Gennaro P.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13010192},
pmid = {39858960}
}
@article{lin399891,
title = {Role of the gut microbiome in psychological symptoms associated with inflammatory bowel diseases.},
author = {Atanasova K, Knodler LL, Reindl W, Ebert MP, Thomann AK.},
journal = {Semin Immunopathol},
year = {2025},
doi = {10.1007/s00281-025-01036-x},
pmid = {39870972}
}
@article{lin400251,
title = {Human-derived microRNA 21 regulates indole and L-tryptophan biosynthesis transcripts in the gut commensal Bacteroides thetaiotaomicron.},
author = {Flanagan K, Gassner K, Lang M, Ozelyte J, Hausmann B, Crepaz D, Pjevac P, Gasche C, Berry D, Vesely C, Pereira FC.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.03928-24},
pmid = {39878512}
}
@article{lin399625,
title = {Characteristics and function of the gut microbiota in patients with rectal neuroendocrine tumors.},
author = {Gao Y, Zheng H, Ye M, Zhou G, Chen J, Qiang X, Bai J, Lu X, Tang Q.},
journal = {J Cancer},
year = {2025},
doi = {10.7150/jca.103297},
pmid = {39895797}
}
@article{lin400051,
title = {Population-level gut microbiome and its associations with environmental factors and metabolic disorders in Southwest China.},
author = {Qu Q, Dou Q, Xiang Z, Yu B, Chen L, Fan Z, Zhao X, Yang S, Zeng P.},
journal = {NPJ Biofilms Microbiomes},
year = {2025},
doi = {10.1038/s41522-025-00661-6},
pmid = {39905038}
}
@article{lin399540,
title = {Antimicrobial resistance pattern of the Bacteroides fragilis group strains isolated at a teaching hospital in China.},
author = {Wu ZC, Feng HX, Wu L, Zhang M, Gu Z.},
journal = {Acta Microbiol Immunol Hung},
year = {2025},
doi = {10.1556/030.2025.02400},
pmid = {39907717}
}
@article{lin399808,
title = {The impact of different gastrointestinal reconstruction techniques on gut microbiota after gastric cancer surgery.},
author = {Yang Y, Zhou HY, Zhou GM, Chen J, Ming R, Zhang D, Jiang HW.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1494049},
pmid = {39925886}
}
@article{lin400184,
title = {Bacterial targets of fecal host miRNAs in high-fat diet-fed mice.},
author = {Silamikele L, Silamikelis I, Kotovica PP, Klovins J.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0315871},
pmid = {39932930}
}
@article{lin399731,
title = {Effects of Vegetable and Fruit Juicing on Gut and Oral Microbiome Composition.},
author = {Sardaro MLS, Grote V, Baik J, Atallah M, Amato KR, Ring M.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17030458},
pmid = {39940316}
}
@article{lin399701,
title = {Temporal stability and lack of variance in microbiome composition and functionality in fit recreational athletes.},
author = {O' Donovan CM, Nori SRC, Shanahan F, Celentano G, Murphy TB, Cotter PD, Sullivan OO.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-88723-9},
pmid = {39955324}
}
@article{lin399532,
title = {Protective Effect and Gut Microbiota Modulation of Grifola frondosa Antioxidant Peptides in Sodium Dextran Sulfate-Induced Ulcerative Colitis Mice.},
author = {Chen T, Hong L, Wang P, Teng Q, Fang F, Liu Q.},
journal = {Biotechnol Appl Biochem},
year = {2025},
doi = {10.1002/bab.2734},
pmid = {39957377}
}
@article{lin400091,
title = {Biodegradable Electrospun PLGA Nanofibers-Encapsulated Trichinella Spiralis Antigens Protect from Relapsing Experimental Autoimmune Encephalomyelitis and Related Gut Microbiota Dysbiosis.},
author = {Sabljic L, Radulovic N, Dokic J, Stojanovic DB, Radojevic D, Glamoclija S, Dinic M, Golic N, Vasilev S, Uskokovic P, Sofronic-Milosavljevic L, Gruden-Movsesijan A, Tomic S.},
journal = {Int J Nanomedicine},
year = {2025},
doi = {10.2147/ijn.s499161},
pmid = {39963417}
}
@article{lin399976,
title = {Cannabidiol reshapes the gut microbiome to promote endurance exercise in mice.},
author = {Chen S, Lee YB, Song MY, Lim C, Cho H, Shim HJ, Kim JS, Park BH, Kim JK, Bae EJ.},
journal = {Exp Mol Med},
year = {2025},
doi = {10.1038/s12276-025-01404-5},
pmid = {39966566}
}
@article{lin399864,
title = {Identification of disease-specific gut microbial markers in vitiligo.},
author = {Dou Y, Niu Y, Shen H, Wang L, Lv Y, Liu S, Xie X, Feng A, Liu X.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1499035},
pmid = {39967732}
}
@article{lin399710,
title = {Correlation study on gut microbiota and myosteatosis in patients with liver cirrhosis.},
author = {Zhao N, Bai J, Li X, Xu G, Fu X, Li J, Niu L, Yao J, Zhou X.},
journal = {Front Nutr},
year = {2025},
doi = {10.3389/fnut.2025.1513973},
pmid = {39968394}
}
@article{lin399830,
title = {Lipid alterations in acute myocardial infarction are associated with gut microbiota.},
author = {Zuo J, Wang P, Xue K, Tan Y, Zhang T, Li Y, He F, Wu W, Yan Z, Cong L, Li G.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.02370-24},
pmid = {39969201}
}
@article{lin399707,
title = {Systematic review of bidirectional interaction between gut microbiome, miRNAs, and human pathologies.},
author = {Drago L, De La Motte LR, Deflorio L, Sansico DF, Salvatici M, Micaglio E, Biazzo M, Giarritiello F.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1540943},
pmid = {39973938}
}
@article{lin400248,
title = {From Microbes to Metabolites: Advances in Gut Microbiome Research in Type 1 Diabetes.},
author = {Blok L, Hanssen N, Nieuwdorp M, Rampanelli E.},
journal = {Metabolites},
year = {2025},
doi = {10.3390/metabo15020138},
pmid = {39997763}
}
@article{lin399734,
title = {Combined Analysis of Transcriptomes and Metabolomes Reveals Key Genes and Substances That Affect the Formation of a Multi-Species Biofilm by Nine Gut Bacteria.},
author = {Zhang T, Pei Z, Wang H, Zhao J, Chen W, Lu W.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13020234},
pmid = {40005603}
}
@article{lin399908,
title = {The Prebiotic Effect of Kaempferol in Regulating Bile Acid Metabolism.},
author = {Li X, Huang G, Khan I, Ding Z, Hsiao WLW, Liu Z.},
journal = {Food Sci Nutr},
year = {2025},
doi = {10.1002/fsn3.70023},
pmid = {40008236}
}
@article{lin399716,
title = {Multi-omics analysis reveals associations between gut microbiota and host transcriptome in colon cancer patients.},
author = {Qin Y, Wang Q, Lin Q, Liu F, Pan X, Wei C, Chen J, Huang T, Fang M, Yang W, Pan L.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.00805-24},
pmid = {40013792}
}
@article{lin400054,
title = {Utilizing kombucha culture for coffee fermentation and biochemical characteristic analysis.},
author = {Kim H, Jeon J, Lee J, Song C, Gu B, Kim NM, Yang TH, Oh S, Park S, Pal K, Kim GJ, Kim D.},
journal = {Curr Res Food Sci},
year = {2025},
doi = {10.1016/j.crfs.2025.100996},
pmid = {40018374}
}
@article{lin399785,
title = {The impact of perinatal maternal stress on the maternal and infant gut and human milk microbiomes: A scoping review.},
author = {Ryan N, O'Mahony S, Leahy-Warren P, Philpott L, Mulcahy H.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0318237},
pmid = {40019912}
}
@article{lin399754,
title = {Metagenomic Analysis of Surface Waters and Wastewater in the Colombian Andean Highlands: Implications for Health and Disease.},
author = {Urrea V, Paez-Triana L, Velasquez-Ortiz N, Camargo M, Patino LH, Vega L, Ballesteros N, Hidalgo-Troya A, Galeano LA, Ramirez JD, Munoz M.},
journal = {Curr Microbiol},
year = {2025},
doi = {10.1007/s00284-024-04019-7},
pmid = {40021498}
}
@article{lin399990,
title = {Multi-omics unveils strain-specific neuroactive metabolite production linked to inflammation modulation by Bacteroides and their extracellular vesicles.},
author = {Yousuf B, Mottawea W, Esmail GA, Nazemof N, Bouhlel NE, Njoku E, Li Y, Zhang X, Minic Z, Hammami R.},
journal = {Curr Res Microb Sci},
year = {2025},
doi = {10.1016/j.crmicr.2025.100358},
pmid = {40027450}
}
@article{lin81318,
title = {Interbacterial warfare in the human gut: insights from Bacteroidales' perspective.},
author = {Jiang K, Pang X, Li W, Xu X, Yang Y, Shang C, Gao X.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2473522},
pmid = {40038576}
}
@article{lin399938,
title = {Different intestinal ecological niches drive the divergent evolution of probiotics in the gut.},
author = {Han Z, Huang D, Liu X, Ma W, Cui W, Jiang S, Zhen D, Zhang J.},
journal = {ISME Commun},
year = {2025},
doi = {10.1093/ismeco/ycaf023},
pmid = {40041705}
}
@article{lin400094,
title = {Dynamics of gut resistome and mobilome in early life: a meta-analysis.},
author = {Bargheet A, Noordzij HT, Ponsero AJ, Jian C, Korpela K, Valles-Colomer M, Debelius J, Kurilshikov A, Pettersen VK.},
journal = {EBioMedicine},
year = {2025},
doi = {10.1016/j.ebiom.2025.105630},
pmid = {40048849}
}
@article{lin399872,
title = {Rapid identification of antibiotic resistance gene hosts by prescreening ARG-like reads.},
author = {Su Z, Gu AZ, Wen D, Li F, Huang B, Mu Q, Chen L.},
journal = {Environ Sci Ecotechnol},
year = {2025},
doi = {10.1016/j.ese.2024.100502},
pmid = {40059905}
}
@article{lin400067,
title = {Integrating multi-omics data to reveal the host-microbiota interactome in inflammatory bowel disease.},
author = {Su F, Su M, Wei W, Wu J, Chen L, Sun X, Liu M, Sun S, Mao R, Bourgonje AR, Hu S.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2476570},
pmid = {40063366}
}
@article{lin399901,
title = {Using gut microbiome metagenomic hypervariable features for diabetes screening and typing through supervised machine learning.},
author = {Chavarria X, Park HS, Oh S, Kang D, Choi JH, Kim M, Cho YH, Yi MH, Kim JY.},
journal = {Microb Genom},
year = {2025},
doi = {10.1099/mgen.0.001365},
pmid = {40063675}
}
@article{lin399896,
title = {Microbiota and metabolite-based prediction tool for colonic polyposis with and without a known genetic driver.},
author = {Katona BW, Shukla A, Hu W, Nyul T, Dudzik C, Arvanitis A, Clay D, Dungan M, Weber M, Tu V, Hao F, Gan S, Chau L, Buchner AM, Falk GW, Jaffe DL, Ginsberg G, Palmer SN, Zhan X, Patterson AD, Bittinger K, Ni J.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2474141},
pmid = {40069167}
}
@article{lin399969,
title = {Heterocyclic Antidepressants with Antimicrobial and Fungicide Activity.},
author = {Zolotareva D, Zazybin A, Belyankova Y, Bayazit S, Dauletbakov A, Seilkhanov T, Kemelbekov U, Aydemir M.},
journal = {Molecules},
year = {2025},
doi = {10.3390/molecules30051102},
pmid = {40076325}
}
@article{lin399815,
title = {Efficacy of Lacticaseibacillus rhamnosus probiotic strains in treating chromate induced dermatitis.},
author = {Ali M, Amin A, Abbas Z.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-93732-9},
pmid = {40087372}
}
@article{lin399894,
title = {Disturbances in the gut microbiota potentially associated with metabolic syndrome among patients living with HIV-1 and on antiretroviral therapy at Bafoussam Regional Hospital, Cameroon.},
author = {Diesse JM, Jadhav S, Tamekou SL, Simo G, Dzoyem JP, Souopgui J, Kuiate JR, Nema V.},
journal = {Diabetol Metab Syndr},
year = {2025},
doi = {10.1186/s13098-025-01653-4},
pmid = {40089790}
}
@article{lin399821,
title = {Immunotherapy-mediated modulation of the gut microbiota in multiple sclerosis and associations with diet and clinical response-the effect of dimethyl fumarate therapy.},
author = {Staun-Ram E, Volkowich A, Miller A.},
journal = {Ther Adv Neurol Disord},
year = {2025},
doi = {10.1177/17562864241306565},
pmid = {40092554}
}
@article{lin399706,
title = {Human colitis-associated colorectal carcinoma progression is accompanied by dysbiosis with enriched pathobionts.},
author = {Masaadeh AH, Eletrebi M, Parajuli B, De Jager N, Bosch DE.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2479774},
pmid = {40094201}
}
@article{lin399563,
title = {Prioritizing gut microbial SNPs linked to immunotherapy outcomes in NSCLC patients by integrative bioinformatics analysis.},
author = {Raziq MF, Khan N, Manzoor H, Tariq HMA, Rafiq M, Rasool S, Kayani MUR, Huang L.},
journal = {J Transl Med},
year = {2025},
doi = {10.1186/s12967-025-06370-0},
pmid = {40098172}
}
@article{lin399944,
title = {The Impact of Akkermansia muciniphila on Mouse Models of Depression, Anxiety, and Stress: A Systematic Review and Meta-Analysis.},
author = {Khalili L, Park G, Nagpal R, Bhide P, Salazar G.},
journal = {Curr Neuropharmacol},
year = {2025},
doi = {10.2174/011570159x360149250225041829},
pmid = {40108902}
}
@article{lin400020,
title = {Altered Gut Microbiota Contributes to Acute-Respiratory-Distress-Syndrome-Related Depression through Microglial Neuroinflammation.},
author = {Zhu B, Gu Z, Hu H, Huang J, Zeng Z, Liang H, Yuan Z, Huang S, Qiu Y, Sun XD, Liu Y.},
journal = {Research (Wash D C)},
year = {2025},
doi = {10.34133/research.0636},
pmid = {40110391}
}
@article{lin399949,
title = {Microbial Ecosystem Therapeutics 4 (MET4) elicits treatment-specific IgG responses associated with changes in gut microbiota in immune checkpoint inhibitor recipients with advanced solid tumors.},
author = {Wong MK, Boukhaled GM, Armstrong E, Liu R, Heirali AA, Yee NR, Tsang J, Spiliopoulou P, Schneeberger PHH, Wang BX, Cochrane K, Sherriff K, Allen-Vercoe E, Siu LL, Spreafico A, Coburn B.},
journal = {J Immunother Cancer},
year = {2025},
doi = {10.1136/jitc-2024-010681},
pmid = {40121033}
}
@article{lin399587,
title = {The Effect of the Ideal Food Pyramid on Gut Microbiota in Rheumatoid Arthritis Patients.},
author = {Kacar Mutluturk U, Cicek B, Cengiz G.},
journal = {Life (Basel)},
year = {2025},
doi = {10.3390/life15030463},
pmid = {40141807}
}
@article{lin399722,
title = {Gut Microbiota in Different Treatment Response Types of Crohn's Disease Patients Treated with Biologics over a Long Disease Course.},
author = {Zhao X, Xu J, Wu D, Chen N, Liu Y.},
journal = {Biomedicines},
year = {2025},
doi = {10.3390/biomedicines13030708},
pmid = {40149684}
}
@article{lin399889,
title = {Evaluation of the therapeutic effect of pomegranate peel ginger ultrafine powder on chronic enteritis in mice by regulating intestinal microbiota.},
author = {Guo Z, Wang X, Li Y, Zhang Y, Guo P, Zhang J, Zhang Z, Ma X.},
journal = {Front Immunol},
year = {2025},
doi = {10.3389/fimmu.2025.1563225},
pmid = {40165946}
}
@article{lin399623,
title = {Severe Cognitive Decline in Long-term Care Is Related to Gut Microbiome Production of Metabolites Involved in Neurotransmission, Immunomodulation, and Autophagy.},
author = {Shoubridge AP, Carpenter L, Flynn E, Papanicolas LE, Collins J, Gordon D, Lynn DJ, Whitehead C, Leong LEX, Cations M, De Souza DP, Narayana VK, Choo JM, Wesselingh SL, Crotty M, Inacio MC, Ivey K, Taylor SL, Rogers GB.},
journal = {J Gerontol A Biol Sci Med Sci},
year = {2025},
doi = {10.1093/gerona/glaf053},
pmid = {40166866}
}
@article{lin399554,
title = {MAGs-based genomic comparison of gut significantly enriched microbes in obese individuals pre- and post-bariatric surgery across diverse locations.},
author = {Shi H, Li J.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1485048},
pmid = {40171165}
}
@article{lin399666,
title = {The effect of culturing temperature on the growth of the most dominant bacterial species of human gut microbiota and harmful bacterial species.},
author = {Shimokawa H, Sakakibara H, Ami Y, Hirano R, Kurihara S.},
journal = {Biosci Microbiota Food Health},
year = {2025},
doi = {10.12938/bmfh.2024-087},
pmid = {40171389}
}
@article{lin399788,
title = {Gut microbiota in the development and progression of chronic liver diseases: Gut microbiota-liver axis.},
author = {Yakut A.},
journal = {World J Hepatol},
year = {2025},
doi = {10.4254/wjh.v17.i3.104167},
pmid = {40177197}
}
@article{lin81271,
title = {The estrobolome: Estrogen-metabolizing pathways of the gut microbiome and their relation to breast cancer.},
author = {Larnder AH, Manges AR, Murphy RA.},
journal = {Int J Cancer},
year = {2025},
doi = {10.1002/ijc.35427},
pmid = {40177842}
}
@article{lin399536,
title = {Association between Microbiome Dysbiosis and Postoperative Disorders before and after Gastrectomy.},
author = {Fujii T, Tanaka T, Fujii T, Takahashi H, Kuramitsu K, Funasaka K, Ohno E, Akimoto S, Nakauchi M, Shibasaki S, Uyama I, Hirooka Y, Suda K, Tochio T.},
journal = {Digestion},
year = {2025},
doi = {10.1159/000545678},
pmid = {40203813}
}
@article{lin399738,
title = {Unraveling salivary microbiota diversity following kidney transplantation: insights from baseline peripheral blood lymphocyte subsets.},
author = {Xiang X, Wang T, Ding P, Zhu Y, Cheng K, Ming Y.},
journal = {J Oral Microbiol},
year = {2025},
doi = {10.1080/20002297.2025.2490284},
pmid = {40213771}
}
@article{lin81355,
title = {A Bacteroides thetaiotaomicron genetic locus encodes activities consistent with mucin O-glycoprotein processing and N-acetylgalactosamine metabolism.},
author = {Ndeh DA, Nakjang S, Kwiatkowski KJ, Sawyers C, Koropatkin NM, Hirt RP, Bolam DN.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-58660-2},
pmid = {40216766}
}
@article{lin399642,
title = {Sex-Specific Effect of a High-Energy Diet on Body Composition, Gut Microbiota, and Inflammatory Markers in Rats.},
author = {Minaya DM, Hoss A, Bhagat A, Guo TL, Czaja K.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17071147},
pmid = {40218905}
}
@article{lin400129,
title = {Multi-kingdom gut microbiota dysbiosis is associated with the development of pulmonary arterial hypertension.},
author = {Chen Y, Chen Z, Liang L, Li J, Meng L, Yuan W, Xie B, Zhang X, Feng L, Jia Y, Fu Z, Su P, Tong Z, Zhong J, Liu X.},
journal = {EBioMedicine},
year = {2025},
doi = {10.1016/j.ebiom.2025.105686},
pmid = {40220715}
}
@article{lin399793,
title = {Antimicrobial Effects of Kelisha Capsule on Escherichia coli Induced Diarrhea in Mice.},
author = {Shi G, Lu X, Wang G, Qian K, Peng X, Zhu Y, Wu J, Ke H, Chen L, Zheng Y, Yang T, Shi X, Huang P.},
journal = {Drug Des Devel Ther},
year = {2025},
doi = {10.2147/dddt.s511158},
pmid = {40231195}
}
@article{lin81365,
title = {Microbiota-derived bile acids antagonize the host androgen receptor and drive anti-tumor immunity.},
author = {Jin WB, Xiao L, Jeong M, Han SJ, Zhang W, Yano H, Shi H, Arifuzzaman M, Lyu M, Wang D, Tang YA, Qiao S, JRI IBD Live Cell Bank Consortium, Yang X, Yang HS, Fu J, Sonnenberg GF, Collins N, Artis D, Guo CJ.},
journal = {Cell},
year = {2025},
doi = {10.1016/j.cell.2025.02.029},
pmid = {40239649}
}
@article{lin400056,
title = {Unraveling the microbial diversity of bovine liver abscesses: isolation, identification, and genomic characterization of the Bacteroides found in hepatic lesions.},
author = {Gruninger RJ, McCormack ML, Chomistek NC, Zaheer R, McAllister TA.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.00423-25},
pmid = {40243342}
}
@article{lin399534,
title = {Bile-processed Rhizoma Coptidis alleviates type 2 diabetes mellitus through modulating the gut microbiota and short-chain fatty acid metabolism.},
author = {Zhu Y, Tian Q, Huang Q, Wang J.},
journal = {Int Immunopharmacol},
year = {2025},
doi = {10.1016/j.intimp.2025.114645},
pmid = {40253770}
}
@article{lin400180,
title = {The inconsistent pathogenesis of endometriosis and adenomyosis: insights from endometrial metabolome and microbiome.},
author = {Li C, Xu X, Zhao X, Du B.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.00202-25},
pmid = {40261026}
}
@article{lin399728,
title = {The single degree of polymerization influences the efficacy of xylooligosaccharides in shaping microbial and metabolite profiles in chicken gut to combat avian pathogenic Escherichia coli.},
author = {Ren L, Cao Q, Ye H, Dong Z, Zhang C, Yan F, Zhou Y, Zhou H, Zuo J, Wang W.},
journal = {BMC Microbiol},
year = {2025},
doi = {10.1186/s12866-025-03948-y},
pmid = {40264018}
}
@article{lin399766,
title = {Effect of Lactobacillus rhamnosus AB-GG combined with phototherapy on neonatal jaundice indicators, intestinal microbiota and metabolism.},
author = {Yuan Y, Chen J, Liu T, Chen J, Zhang F, Shi Z, Zhang J.},
journal = {Front Nutr},
year = {2025},
doi = {10.3389/fnut.2025.1581242},
pmid = {40264552}
}
@article{lin399627,
title = {Intestinal Microbiota Composition in Patients with Type 2 Diabetes and Effects of Oral Antidiabetics.},
author = {Kalkan AT, Yorulmaz G, Akalin A, Dinleyici EC.},
journal = {J Clin Med},
year = {2025},
doi = {10.3390/jcm14082786},
pmid = {40283615}
}
@article{lin399932,
title = {Effects of GLP-1 Analogues and Agonists on the Gut Microbiota: A Systematic Review.},
author = {Gofron KK, Wasilewski A, Malgorzewicz S.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17081303},
pmid = {40284168}
}
@article{lin399632,
title = {Role of Gut Microbiota and Metabolomics in Predicting Response to Vedolizumab in Inflammatory Bowel Disease: A Systematic Review.},
author = {Malinauskiene V, Cijauskaite E, Sadauskaite G, Stundiene I.},
journal = {Pharmaceutics},
year = {2025},
doi = {10.3390/pharmaceutics17040476},
pmid = {40284471}
}
@article{lin399621,
title = {High-resolution analysis of the treated coeliac disease microbiome reveals strain-level variation.},
author = {Slager J, Simpson HL, Gacesa R, Chen L, Tan IL, Gelderloos J, Maatman A, Wijmenga C, Zhernakova A, Fu J, Weersma RK, Gonera G, Jonkers IH, Withoff S.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2489071},
pmid = {40289251}
}
@article{lin399890,
title = {Genomic, Probiotic, and Functional Properties of Bacteroides dorei RX2020 Isolated from Gut Microbiota.},
author = {He S, Song L, Xiao Y, Huang Y, Ren Z.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17061066},
pmid = {40292459}
}
@article{lin399822,
title = {Metagenomic Microbial Signatures for Noninvasive Detection of Pancreatic Cancer.},
author = {Chen Y, Nian F, Chen J, Jiang Q, Yuan T, Feng H, Shen X, Dong L.},
journal = {Biomedicines},
year = {2025},
doi = {10.3390/biomedicines13041000},
pmid = {40299688}
}
@article{lin399742,
title = {Quantification of Streptococcus salivarius using the digital polymerase chain reaction as a liver fibrosis marker.},
author = {Iwasaki S, Take A, Uojima H, Horio K, Sakaguchi Y, Gotoh K, Satoh T, Hidaka H, Tanaka Y, Hayashi S, Kusano C.},
journal = {World J Hepatol},
year = {2025},
doi = {10.4254/wjh.v17.i4.102027},
pmid = {40308822}
}
@article{lin399832,
title = {cAMP-independent Crp homolog adds to the multi-layer regulatory network in Porphyromonas gingivalis.},
author = {Smiga M, Roszkiewicz E, Slezak P, Tracz M, Olczak T.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1535009},
pmid = {40308968}
}
@article{lin399537,
title = {Effects of Traditional Asian Diet on dietary fibre requirement, gut microbiome composition, and faecal and urine metabolomes in healthy Asian women: a pilot study.},
author = {Sahran NF, Chong CW, Ismail IH, Taib F, Hoo PS, Palanisamy UD, Sundralingam U, Teh CSJ, Kong ZX, Ayub Q, Yoke Ling F, Hazlan SNH, Azlan M, Abdul Razak S, Tengku Din TADA, Abdullah N, Tagiling N, Tee V, Ehab Ayad M, Zheng FM, El-Omar E, Lee YY.},
journal = {Benef Microbes},
year = {2025},
doi = {10.1163/18762891-bja00074},
pmid = {40312033}
}
@article{lin399849,
title = {Integrating metagenomics and metabolomics to study the gut microbiome and host relationships in sports across different energy systems.},
author = {Aya V, Pardo-Rodriguez D, Vega LC, Cala MP, Ramirez JD.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-98973-2},
pmid = {40316630}
}
@article{lin399747,
title = {Co-variation of Host Gene Expression and Gut Microbiome in Intestine-Specific Spp1 Conditional Knockout Mice.},
author = {Li N, Gao G, Zhang T, Zhao C, Zhao Y, Zhang Y, Sun Z.},
journal = {Curr Microbiol},
year = {2025},
doi = {10.1007/s00284-025-04246-6},
pmid = {40327160}
}
@article{lin399979,
title = {Early-life and concurrent predictors of the healthy adolescent microbiome in a cohort study.},
author = {Laue HE, Willis AD, Wang F, MacDougall MC, Xu Y, Karagas MR, Madan JC, Fleisch AF, Lanphear BP, Cecil KM, Yolton K, Chen A, Buckley JP, Braun JM.},
journal = {Genome Med},
year = {2025},
doi = {10.1186/s13073-025-01481-1},
pmid = {40340756}
}
@article{lin399647,
title = {Impact of Blastocystis carriage and colonization intensity on gut microbiota composition in a non-westernized rural population from Colombia.},
author = {Castaneda S, Tomiak J, Andersen LO, Acosta CP, Vasquez-A LR, Stensvold CR, Ramirez JD.},
journal = {PLoS Negl Trop Dis},
year = {2025},
doi = {10.1371/journal.pntd.0013111},
pmid = {40354411}
}
@article{lin399622,
title = {Dysbiosis in the Gut Microbiome of Pembrolizumab-Treated Non-Small Lung Cancer Patients Compared to Healthy Controls Characterized Through Opportunistic Sampling.},
author = {Charalambous H, Brown C, Vogazianos P, Katsaounou K, Nikolaou E, Stylianou I, Papageorgiou E, Vraxnos D, Aristodimou A, Chi J, Costeas P, Shammas C, Apidianakis Y, Antoniades A.},
journal = {Thorac Cancer},
year = {2025},
doi = {10.1111/1759-7714.70075},
pmid = {40356191}
}
@article{lin399562,
title = {Impact of bacteroides uniformis on fatty liver hemorrhagic syndrome in dawu golden phoenix laying hens: modulation of gut microbiota and arachidonic acid metabolism.},
author = {Zhang Y, Ma R, Du X, He X, Zhang Y, Ma N, Liu H, Zhao X.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1560887},
pmid = {40356654}
}
@article{lin399732,
title = {Fermentation of Alginate and Its Oligosaccharides by the Human Gut Microbiota: Structure-Property Relationships and New Findings Focusing on Bacteroides xylanisolvens.},
author = {Li J, Lv Y, Shao M, Lv D, Fu Z, Guo P, Li Q, Shang Q.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17091424},
pmid = {40362733}
}
@article{lin399783,
title = {The role of microbiome dysbiosis in cardiovascular disease: Mechanisms and therapeutic implications.},
author = {Abdulaal R, Tlaiss Y, Jammal F, Moussbah TH, Tarchichi A, Hteit A, Tlais M, Nassif D.},
journal = {Glob Cardiol Sci Pract},
year = {2025},
doi = {10.21542/gcsp.2025.3},
pmid = {40390988}
}
@article{lin81288,
title = {Deciphering oxidative stress responses in human gut microbes and fecal microbiota: a cultivation-based approach.},
author = {Zund JN, Caflisch M, Mujezinovic D, Pluss S, Lacroix C, Pugin B.},
journal = {FEMS Microbiol Ecol},
year = {2025},
doi = {10.1093/femsec/fiaf054},
pmid = {40392681}
}
@article{lin399784,
title = {Taking intestinal microbes and the immune system as opportunities to maintain the intestinal health of piglets: review.},
author = {Hou X, Chen Y, Chen F, Yin Y, Xu K.},
journal = {Anim Biosci},
year = {2025},
doi = {10.5713/ab.25.0100},
pmid = {40400191}
}
@article{lin399526,
title = {Synergistic effects of human-origin novel postbiotic Bacteroides & Phocaeicola on obesity and thermogenesis in high-fat diet-induced metabolic dysfunction.},
author = {Wu L, Wang JH, Park SH, Cui Y, Han K, Kim H.},
journal = {Benef Microbes},
year = {2025},
doi = {10.1163/18762891-bja00080},
pmid = {40404147}
}
@article{lin399578,
title = {Bacteroides uniformis-generated hexadecanedioic acid ameliorates metabolic-associated fatty liver disease.},
author = {Zhang DY, Li D, Chen SJ, Zhang LJ, Zhu XL, Chen FD, Chen C, Wang Q, Du Y, Xiong JX, Huang SM, Zhang XD, Lv YT, Zeng F, Chen RX, Huang X, Mao F, Zhou S, Yao Q, Huang Y, Chen R, Mo Y, Xie Y, Jiang YH, Chen Z, Mo CY, Chen JJ, Bai FH.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2508433},
pmid = {40413726}
}
@article{lin399682,
title = {Prolonged effect of antibiotic therapy on the gut microbiota composition, functionality, and antibiotic resistance genes' profiles in healthy stool donors.},
author = {Karimianghadim R, Satokari R, Yeo S, Arkkila P, Kao D, Pakpour S.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1589704},
pmid = {40415928}
}
@article{lin399827,
title = {Microbiome signatures of virulence in the oral-gut-brain axis influence Parkinson's disease and cognitive decline pathophysiology.},
author = {Clasen F, Yildirim S, Arikan M, Garcia-Guevara F, Hanoglu L, Yilmaz NH, Sen A, Celik HK, Neslihan AA, Demir TK, Temel Z, Mardinoglu A, Moyes DL, Uhlen M, Shoaie S.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2506843},
pmid = {40420833}
}
@article{lin399903,
title = {Breed-specific differences of gut microbiota and metabolomic insights into fat deposition and meat quality in Chinese Songliao Black Pig and Large White × Landrace Pig Breeds.},
author = {Kumar ST, Zhang Y, Zhang Q, Azeem RM, Jing Z, Pan L, Sun WS, Zhao Y, Zhang SM.},
journal = {BMC Microbiol},
year = {2025},
doi = {10.1186/s12866-025-04051-y},
pmid = {40426050}
}
@article{lin399777,
title = {Metagenomic Comparison of Gut Microbes of Lemur catta in Captive and Semi-Free-Range Environments.},
author = {Xu C, Guo X, Li L.},
journal = {Animals (Basel)},
year = {2025},
doi = {10.3390/ani15101442},
pmid = {40427319}
}
@article{lin399921,
title = {Metagenomics reveals an increased proportion of an Escherichia coli-dominated enterotype in elderly Chinese people.},
author = {Li J, Wu Y, Yang Y, Chen L, He C, Zhou S, Huang S, Zhang X, Wang Y, Gui Q, Lu H, Zhang Q, Yang Y.},
journal = {J Zhejiang Univ Sci B},
year = {2025},
doi = {10.1631/jzus.b2400341},
pmid = {40436643}
}
@article{lin399740,
title = {Characteristics of the gut virome in patients with premalignant colorectal adenoma.},
author = {Zhang P, Tuo X, Jiang J, Zhang Y, Zhao J, Deng C, Zhao G, Cheng Y, Song L, Yang Y, Guo R, Zhang H, Zhao H, Ma S, Li L, Shi H.},
journal = {J Transl Med},
year = {2025},
doi = {10.1186/s12967-025-06404-7},
pmid = {40437611}
}
@article{lin399803,
title = {Persistent reduction of Bifidobacterium longum in the infant gut microbiome in the first year of age following intrapartum penicillin prophylaxis for maternal GBS colonization.},
author = {Teuscher JL, Lupatsii M, Graspeuntner S, Jonassen S, Bringewatt A, Herting E, Stichtenoth G, Bossung V, Rupp J, Hartel C, Demmert M.},
journal = {Front Immunol},
year = {2025},
doi = {10.3389/fimmu.2025.1540979},
pmid = {40443663}
}
@article{lin399838,
title = {Enterotype-stratified gut microbial signatures in MASLD and cirrhosis based on integrated microbiome data.},
author = {Yuan H, Zhou J, Wu X, Wang S, Park S.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1568672},
pmid = {40444006}
}
@article{lin399670,
title = {Eggerthella lenta down regulated flavone and flavonol biosynthesis promoted Kawasaki disease.},
author = {Yeh YT, Chen KD, Huang CH, Tsai JR, Kuo HC.},
journal = {Virulence},
year = {2025},
doi = {10.1080/21505594.2025.2512401},
pmid = {40448518}
}
@article{lin399713,
title = {Bite injuries at a level 1 trauma center in Germany.},
author = {Polan C, Kraus SC, Herten M, Meyer HL, Mester B, Hilken G, Dudda M, Kauther MD, Burggraf M.},
journal = {Trauma Surg Acute Care Open},
year = {2025},
doi = {10.1136/tsaco-2024-001613},
pmid = {40458616}
}
@article{lin399528,
title = {Goat milk oligosaccharides improve growth and gut microbiota composition in stunted mice.},
author = {Chen X, Zeng X, Xiang F, Li J, Li W, Cao T, Wang H, Li B, Wang J.},
journal = {Food Res Int},
year = {2025},
doi = {10.1016/j.foodres.2025.116640},
pmid = {40467228}
}
@article{lin399523,
title = {Gut microbiota dysbiosis and metabolic shifts in pediatric norovirus infection: a metagenomic study in Northeast China.},
author = {Wang Z, Wei X, Piao L, Zhang X, Wang H.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1600470},
pmid = {40475346}
}
@article{lin400012,
title = {Integrated multi-omics analysis reveals the functional signature of microbes and metabolomics in pre-diabetes individuals.},
author = {Liu Y, Qiu Q, Chen Y, Deng Y, Huang W, Sun C, Shang X, Chen X, Wang C, Han L, Chen S, Yuan J, Xu F, Yang Z, Fang X, Huang L.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.01459-24},
pmid = {40488467}
}
@article{lin399736,
title = {Characteristics and Clinical Significance of Gut Microbiota in Patients with Invasive Pulmonary Aspergillosis.},
author = {Cao J, He Q, Zhang M, Zhou R, Feng C.},
journal = {Pol J Microbiol},
year = {2025},
doi = {10.33073/pjm-2025-011},
pmid = {40489603}
}
@article{lin400011,
title = {Human gut commensal Alistipes timonensis modulates the host lipidome and delivers anti-inflammatory outer membrane vesicles to suppress colitis in an Il10-deficient mouse model.},
author = {Older EA, Mitchell MK, Campbell A, Lian X, Madden M, Wang Y, van de Wal LE, Zaw T, VanderVeen BN, Tatum R, Murphy EA, Chen YH, Fan D, Ellermann M, Li J.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2517380},
pmid = {40497338}
}
@article{lin400386,
title = {Gut Microbiota Modulation through Akkermansia spp. Supplementation Increases CAR T-cell Potency.},
author = {Marcos-Kovandzic L, Avagliano M, Ben Khelil M, Srikanthan J, Abdallah R, Petrocelli V, Rengassamy J, Alfaro A, Bied M, Fidelle M, Ferrere G, Daillere R, Arbab A, Amine-Hneineh R, Pages A, Dartigues P, Ly P, Simon S, Durand S, Gottschlich A, Ginhoux F, Bleriot C, Liu P, Zhao L, Creusot L, Rolhion N, Derosa L, Kroemer G, Menger L, Kobold S, Castilla-Llorente C, Sokol H, Casola S, Pasolli E, Zitvogel L, Bigenwald C.},
journal = {Cancer Discov},
year = {2025},
doi = {10.1158/2159-8290.cd-24-1230},
pmid = {40498998}
}
@article{lin399887,
title = {Gut microbiota alterations are linked to COVID-19 severity in North African and European populations.},
author = {Bredon M, Hausfater P, Khalki L, Tijani Y, Cheikh A, Brot L, Creusot L, Rolhion N, Trottein F, Lambeau G, Georgin-Lavialle S, Bleibtreu A, Baudel JL, Lefevre A, Emond P, Tubach F, Simon-Tillaux N, Simon T, Gorochov G, Zaid Y, Sokol H.},
journal = {NPJ Biofilms Microbiomes},
year = {2025},
doi = {10.1038/s41522-025-00733-7},
pmid = {40506443}
}
@article{lin399765,
title = {Ruptured isolated spinal artery aneurysms: a rare manifestation of an arterial dissecting disease.},
author = {Kee TP, Krings T, Pace J, Swaminathan SK, Orru' E.},
journal = {Front Neurol},
year = {2025},
doi = {10.3389/fneur.2025.1567536},
pmid = {40510201}
}
@article{lin399604,
title = {Ameliorating potential of Auricularia auricula-judae polysaccharides in mitigating hypercaloric diet-induced behavioral disorders through gut microbiota regulation.},
author = {Fei Y, Zhang J, Yuan S, Liu Y, Wang X, Wang M, Zhao H, Liu Q.},
journal = {Front Nutr},
year = {2025},
doi = {10.3389/fnut.2025.1585778},
pmid = {40510494}
}
@article{lin399617,
title = {Microbiome-Informed Dosing: Exploring Gut Microbial Communities Impact on Mycophenolate Enterohepatic Circulation and Therapeutic Target Achievement.},
author = {Saqr A, Cheng S, Al-Kofahi M, Staley C, Jacobson PA.},
journal = {Clin Pharmacol Ther},
year = {2025},
doi = {10.1002/cpt.3740},
pmid = {40516101}
}
@article{lin399638,
title = {Anxiety-like behavior during protracted morphine withdrawal is driven by gut microbial dysbiosis and attenuated with probiotic treatment.},
author = {Oppenheimer M, Tao J, Moidunny S, Roy S.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2517838},
pmid = {40518557}
}
@article{lin400061,
title = {Proton-pump inhibitors increase C. difficile infection risk by altering pH rather than by affecting the gut microbiome based on a bioreactor model.},
author = {Schumacher J, Muller P, Sulzer J, Faber F, Molitor B, Maier L.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2519697},
pmid = {40524314}
}
@article{lin399572,
title = {Altered fecal microbial and metabolic profiles reveal potential mechanisms underlying anemia in patients with chronic renal failure.},
author = {Wang H, Xue W, Cheng J, He Y, Song Y, Hu D, Peng A, Li C, Bao H.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.03166-24},
pmid = {40525868}
}
@article{lin399603,
title = {Gut Mucosal Microbiome of Patients With Low-Grade Adenomatous Bowel Polyps.},
author = {Welham Z, Li J, Tse B, Engel A, Molloy MP.},
journal = {Gastro Hep Adv},
year = {2025},
doi = {10.1016/j.gastha.2025.100687},
pmid = {40530238}
}
@article{lin399709,
title = {How is the human microbiome linked to kidney stones?},
author = {Pei X, Liu M, Yu S.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1602413},
pmid = {40546285}
}
@article{lin399611,
title = {The Emergence of Bacteroides pyogenes as a Human Pathogen of Animal Origin: A Narrative Review.},
author = {Mauri C, Giubbi C, Consonni A, Briozzo E, Meroni E, Luzzaro F, Tonolo S.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13061200},
pmid = {40572088}
}
@article{lin399948,
title = {Triple-Probiotic-Fermented Goji (Lycium barbarum L.) Ameliorates Metabolic Disorders Associated with Hyperuricemia in Mice.},
author = {Ren L, Li Y, Liu S, Jia X, He H, Zhong F, Lu F, Luo X.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13061367},
pmid = {40572255}
}
@article{lin399608,
title = {Modulation of Gut Microbiota by Whole Encapsulated Brown Seaweed (Himanthalia elongata) in Overweight Subjects: A Randomized Double-Blind Placebo-Controlled Trial.},
author = {Lopez-Santamarina A, Cardelle-Cobas A, Mondragon ADC, Cepeda A, Rodriguez JA, Miranda JM.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17122047},
pmid = {40573158}
}
@article{lin399588,
title = {Makgeolli Lees as a Novel Prebiotic Candidate: Effects on Human Gut Microbiota and Metabolites.},
author = {Kim JH, Kim HR, Seong H, Han SH, Kim G, Choi Y, Han NS.},
journal = {J Microbiol Biotechnol},
year = {2025},
doi = {10.4014/jmb.2504.04020},
pmid = {40582765}
}
@article{lin399824,
title = {Human gut bacteria bioaccumulate per- and polyfluoroalkyl substances.},
author = {Lindell AE, Griesshammer A, Michaelis L, Papagiannidis D, Ochner H, Kamrad S, Guan R, Blasche S, Ventimiglia LN, Ramachandran B, Ozgur H, Zelezniak A, Beristain-Covarrubias N, Yam-Puc JC, Roux I, Barron LP, Richardson AK, Martin MG, Benes V, Morone N, Thaventhiran JED, Bharat TAM, Savitski MM, Maier L, Patil KR.},
journal = {Nat Microbiol},
year = {2025},
doi = {10.1038/s41564-025-02032-5},
pmid = {40595288}
}
@article{lin400298,
title = {Revolutionizing gastroenterology and hepatology with artificial intelligence: From precision diagnosis to equitable healthcare through interdisciplinary practice.},
author = {Chen ZL, Wang C, Wang F.},
journal = {World J Gastroenterol},
year = {2025},
doi = {10.3748/wjg.v31.i24.108021},
pmid = {40599184}
}
@article{lin399600,
title = {Water-soluble cellulose acetate attenuates glucose intolerance through GLP-1 and PYY signal upregulation.},
author = {Asaeda K, Takagi T, Murakami E, Hashimoto H, Yasuda T, Kajiwara-Kubota M, Sugaya T, Mizushima K, Higashimura Y, Ryuji OK, Kimura I, Inoue K, Uchiyama K, Shimamoto S, Ukawa Y, Kohara A, Kudoh M, Naito Y, Itoh Y.},
journal = {NPJ Sci Food},
year = {2025},
doi = {10.1038/s41538-025-00505-9},
pmid = {40603885}
}
@article{lin400218,
title = {Multi-omic analysis reveals transkingdom gut dysbiosis in metabolic dysfunction-associated steatotic liver disease.},
author = {Kim H, Nelson P, Nzabarushimana E, Shen J, Jensen J, Bhosle A, Li C, Lee N, Everett C, Berdy B, Frongillo G, Livny J, Hu FB, Simon TG, McIver L, Franzosa EA, Chan AT, Hayete B, Thompson KN, Huttenhower C, Nguyen LH.},
journal = {Nat Metab},
year = {2025},
doi = {10.1038/s42255-025-01318-6},
pmid = {40604156}
}
@article{lin399929,
title = {Parabacteroides johnsonii inhibits the onset and progression of colorectal cancer by modulating the gut microbiota.},
author = {Liu J, Zhang Y, Xu L, Gu G, Dong Z.},
journal = {J Transl Med},
year = {2025},
doi = {10.1186/s12967-025-06675-0},
pmid = {40605035}
}
@article{lin399798,
title = {Multi-kingdom microbiota analysis reveals bacteria-viral interplay in IBS with depression and anxiety.},
author = {Liu Q, Fang W, Zheng P, Xie S, Jiang X, Luo W, Han L, Zhao L, Lu L, Zhai L, Yu DJ, Yang W, Lin C, Fang X, Bian Z.},
journal = {NPJ Biofilms Microbiomes},
year = {2025},
doi = {10.1038/s41522-025-00760-4},
pmid = {40617850}
}
@article{lin399529,
title = {Dietary Nutrition, Gut Microbiota, and Health Status Across Geographically Diverse Populations in Mongolia: A Cross-Sectional Study.},
author = {Zhao Z, Zhao F, Chimeddorj B, Sun Z, Tserenkhuu E, Ochirdanzan M, Ganpurev D, Fun W, Wusigale, Li W, Liu W, Yang S, Zhang M, Davaasambuu E, Talkhaa Y, Narankhuu Y, Bromage S, Warinner C, Menghe B, Ganmaa D.},
journal = {Food Sci Nutr},
year = {2025},
doi = {10.1002/fsn3.70531},
pmid = {40621189}
}
@article{lin399933,
title = {Maternal and placental microbiome and immune crosstalk in pregnancies with small-for-gestational-age fetuses - a pilot case-control study.},
author = {Kosinska-Kaczynska K, Krawczyk D, Bednorz M, Chaberek K, Czapska A, Zgliczynska M, Goryca K, Piatkowska M, Balabas A, Czarnowski P, Zeber-Lubecka N.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1596588},
pmid = {40625836}
}
@article{lin399724,
title = {Gut microbiome changes and cancer immunotherapy outcomes associated with dietary interventions: a systematic review of preclinical and clinical evidence.},
author = {Somodi C, Dora D, Horvath M, Szegvari G, Lohinai Z.},
journal = {J Transl Med},
year = {2025},
doi = {10.1186/s12967-025-06586-0},
pmid = {40629403}
}
@article{lin399651,
title = {Moderate altitude exposure impacts extensive host-microbiota multi-kingdom connectivity with serum metabolome and fasting blood glucose.},
author = {Huang X, Gao X, Fan Y, Wang D, Chen X, Qi X, Yang Z, Wang YE, Meng J, Zou G, Liu Z, Li X.},
journal = {Virulence},
year = {2025},
doi = {10.1080/21505594.2025.2530660},
pmid = {40631381}
}
@article{lin399662,
title = {The role of intestinal microbiota in the humoral response to SARS-CoV-2 after mRNA-1273 vaccination.},
author = {Tarrino M, Gutierrez-Bautista JF, Duran MJO, Garcia-Diaz A, Cabrera-Serrano AJ, Sainz J, Cobo F, Rodriguez T, Reguera JA, Bernal M, Lopez-Nevot MA, Sampedro A.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-11103-w},
pmid = {40634526}
}
@article{lin399767,
title = {Fexofenadine HCl enhances growth, biofilm, and lactic acid production of Limosilactobacillus reuteri and Bifidobacterium longum: implications for allergy treatment.},
author = {Hammouda ZK, Wasfi R, Abdeltawab NF.},
journal = {BMC Microbiol},
year = {2025},
doi = {10.1186/s12866-025-04130-0},
pmid = {40640705}
}
@article{lin399629,
title = {Straining to define a healthy microbiome.},
author = {Seekatz AM.},
journal = {mSphere},
year = {2025},
doi = {10.1128/msphere.00797-24},
pmid = {40643244}
}
@article{lin399571,
title = {Prebiotic Effect of Oxidized Hydroxypropyl Starch via In Vitro and In Vivo.},
author = {Zheng H, Xu Z, Fan Y, Han J, Zhou L, Li H, Pan X, Ma R, Liu C, Tian Y.},
journal = {Foods},
year = {2025},
doi = {10.3390/foods14132217},
pmid = {40646969}
}
@article{lin399719,
title = {Modulatory Role of Hesperetin-Copper(II) on Gut Microbiota in Type 2 Diabetes Mellitus Mice.},
author = {Peng X, Wei Y, Gong D, Zhang G.},
journal = {Foods},
year = {2025},
doi = {10.3390/foods14132390},
pmid = {40647142}
}
@article{lin399804,
title = {The Association Between Prevotella copri and Advanced Fibrosis in the Progression of Metabolic Dysfunction-Associated Steatotic Liver Disease.},
author = {Zhang D, Leitman M, Pawar S, Shera S, Hernandez L, Jacobs JP, Dong TS.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17132145},
pmid = {40647253}
}
@article{lin399775,
title = {Integrated Multi-Omics Analysis Reveals the Regulatory Mechanism of Peanut Skin Procyanidins on Lipid Metabolism in High-Fat-Diet-Induced Obese Mice.},
author = {Shen J, Zhou Y, Yang D, Liu R, Zhu X, Liu R.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17132228},
pmid = {40647332}
}
@article{lin399860,
title = {Programmable probiotic consortium employ an oleic acid-inducible system to sense and degrade cholesterol in high-fat diet mice.},
author = {Yang Q, Xiang W, Khan A, Salama ES, Kulshreshtha S, Ji J, Wu Y, Li X.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2531198},
pmid = {40650420}
}
@article{lin399859,
title = {Coarse-grained model of serial dilution dynamics in synthetic human gut microbiome.},
author = {Mahajan T, Maslov S.},
journal = {PLoS Comput Biol},
year = {2025},
doi = {10.1371/journal.pcbi.1013222},
pmid = {40658721}
}
@article{lin400048,
title = {Intermittent supplementation with Akkermansia muciniphila and galactooligosaccharides modulates Alzheimer's disease progression, gut microbiota, and colon short-chain fatty acid profiles in mice.},
author = {Kunevicius A, Vijaya AK, Atzeni A, Mingaila J, Simoliune I, Jamontas R, Kezeviciute E, Gueimonde M, Meskys R, Baltriukiene D, Arboleya S, Burokas A.},
journal = {Front Aging Neurosci},
year = {2025},
doi = {10.3389/fnagi.2025.1617980},
pmid = {40662084}
}
@article{lin399601,
title = {Hindgut microbiota profiling and functional prediction of sheep (Ovis aries) fed with different dietary calcium levels.},
author = {Khan M, Zhao X, Ni X, Danzeng B, Ali S, Mushtaq M, Yang H, Liang J, Fareed SK, Xue B, Quan G.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-11020-y},
pmid = {40664738}
}
@article{lin399649,
title = {Exploration of fecal microbiota in newly diagnosed patients with inflammatory bowel disease using shotgun metagenomics.},
author = {Orejudo M, Gomez MJ, Riestra S, Rivero M, Gutierrez A, Rodriguez-Lago I, Fernandez-Salazar L, Ceballos D, Benitez JM, Aguas M, Baston-Rey I, Bermejo F, Casanova MJ, Lorente-Poyatos RH, Ber Y, Ginard D, Esteve M, de Francisco R, Garcia MJ, Frances R, Rodriguez A, Alcaide Suarez N, Guerra Del Rio E, Soto P, Nos P, Barreiro-de Acosta M, Guerra I, Hervias Cruz D, Dominguez Cajal M, Royo V, Aceituno M, Aldars-Garcia L, Garre A, Ramirez C, Soleto I, Schuppe-Koistinen I, Engstrand L, Baldan-Martin M, Sanchez-Cabo F, Gisbert JP, Chaparro M.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1595884},
pmid = {40667420}
}
@article{lin399531,
title = {Discovery of a Widespread Polyamine-Low-Molecular-Weight Thiol Hybrid Pathway in Clostridioides difficile.},
author = {Hunt RL, Oh J, Jain A, Kuo TH, Berardi D, Jian W, Song D, Wu Q, Goodman AL, Palm NW, Zimmermann M, Johnson CH, Crawford JM.},
journal = {ACS Infect Dis},
year = {2025},
doi = {10.1021/acsinfecdis.5c00286},
pmid = {40671632}
}
@article{lin400034,
title = {Deciphering the Physiological Responses to the Intake of Plant-Based Meat Analogues: On the Track of Microbiota and Biomarkers in Serum and Urine.},
author = {Sanchez-Terron G, Martinez R, Morcuende D, Estevez M.},
journal = {J Agric Food Chem},
year = {2025},
doi = {10.1021/acs.jafc.5c02799},
pmid = {40671669}
}
@article{lin81311,
title = {Artificial cellulose derivatives are metabolized by select human gut Bacteroidota upon priming with common plant beta-glucans.},
author = {Panwar D, Stewart WA, Rodd A, Brumer H.},
journal = {J Bacteriol},
year = {2025},
doi = {10.1128/jb.00198-25},
pmid = {40689633}
}
@article{lin399855,
title = {Microbial Dysbiosis as an Emerging Pathology of Suicidal Behaviour? A Critical Review, Passing Through Depression to Chronic Pain.},
author = {Costanza A, Alexander J, Amerio A, Aguglia A, Magnani L, Parise A, Saverino D, Serafini G, Amore M, Nguyen KD.},
journal = {Ann Neurosci},
year = {2025},
doi = {10.1177/09727531251349024},
pmid = {40693247}
}
@article{lin399915,
title = {Gut-derived Faecalibaculum rodentium exerts anti-cancer effects on colorectal cancer by modulating PDPN-CLEC-2 signaling pathway.},
author = {Yang X, Liu M, Wang T, Ma X, Guan Z, Ma B, Duan X, Su C.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.00148-25},
pmid = {40693815}
}
@article{lin399916,
title = {May Sulfites in Wine Affect Gut Microbiota? An In Vitro Study of Their Digestion and Interplay with Wine Polyphenols.},
author = {Relano de la Guia E, Cueva C, Molinero N, Ruano A, Motilva MJ, Bartolome B, Moreno-Arribas MV.},
journal = {J Agric Food Chem},
year = {2025},
doi = {10.1021/acs.jafc.5c02710},
pmid = {40698647}
}
@article{lin399565,
title = {Treatment of Actinomyces europaeus and Clostridium innocuum necrotizing fasciitis: Case report and literature review.},
author = {Avery L, Kufel J, Rawlings R.},
journal = {Am J Health Syst Pharm},
year = {2025},
doi = {10.1093/ajhp/zxaf190},
pmid = {40701608}
}
@article{lin399661,
title = {Machine learning integrates region-specific microbial signatures to distinguish geographically adjacent populations within a province.},
author = {Luo L, Chen B, Zeng S, Li Y, Chen X, Zhang J, Guo X, Li S, Ruan L, Zhu S, Gao C, Zhang C, Li T.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1586195},
pmid = {40718818}
}
@article{lin399687,
title = {Positive Effects of Lycopene on Growth Performance, Hepatic Antioxidant Capacity, Intestinal Morphology, and Cecal Microflora of Yellow-Feather Broilers.},
author = {Cao G, Liu X, Wang H, Kang J, Wang F, Li M, Sun W, Lv X.},
journal = {Animals (Basel)},
year = {2025},
doi = {10.3390/ani15142108},
pmid = {40723570}
}
@article{lin399856,
title = {Exploring the Interplay Between Gut Microbiota and the Melatonergic Pathway in Hormone Receptor-Positive Breast Cancer.},
author = {Laborda-Illanes A, Boutriq S, Aranega-Martin L, Castellano-Castillo D, Sanchez-Alcoholado L, Plaza-Andrades I, Peralta-Linero J, Alba E, Fernandez-Garcia JC, Gonzalez-Gonzalez A, Queipo-Ortuno MI.},
journal = {Int J Mol Sci},
year = {2025},
doi = {10.3390/ijms26146801},
pmid = {40725047}
}
@article{lin399584,
title = {Metagenomic Characterization of Gut Microbiota in Individuals with Low Cardiovascular Risk.},
author = {Issilbayeva A, Kozhakhmetov S, Jarmukhanov Z, Vinogradova E, Mukhanbetzhanov N, Meiramova A, Rib Y, Ivanova-Razumova T, Myrzakhmetova G, Andossova S, Zeinoldina A, Kuantkhan M, Ainabekova B, Bekbossynova M, Kushugulova A.},
journal = {J Clin Med},
year = {2025},
doi = {10.3390/jcm14145097},
pmid = {40725792}
}
@article{lin399686,
title = {Use of Deep Sequencing to Evaluate Transitions in Microbial Communities in Stranded Sargassum.},
author = {Abdool-Ghany AA, Babler KM, Bogumil D, Pollock S, Li J, Manning SR, Solo-Gabriele HM.},
journal = {Int J Microbiol},
year = {2025},
doi = {10.1155/ijm/3915271},
pmid = {40727304}
}
@article{lin399628,
title = {Healthy Ageing and Gut Microbiota: A Study on Longevity in Adults.},
author = {Deng L, Xu J, Xue Q, Wei Y, Wang J.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13071657},
pmid = {40732166}
}
@article{lin399750,
title = {Effects of Italian Mediterranean Organic Diet on the Gut Microbiota: A Pilot Comparative Study with Conventional Products and Free Diet.},
author = {Di Renzo L, Frank G, Pala B, Cianci R, La Placa G, Raffaelli G, Palma R, Peluso D, De Lorenzo A, Gualtieri P, On Behalf Of Clinical Nutrition And Nutrigenomics Project Group.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13071694},
pmid = {40732202}
}
@article{lin81309,
title = {A combination of potential psychobiotics alleviates anxiety and depression behaviors induced by chronic unpredictable mild stress.},
author = {Meng C, Feng S, Hao Z, Liu H.},
journal = {NPJ Biofilms Microbiomes},
year = {2025},
doi = {10.1038/s41522-025-00779-7},
pmid = {40738889}
}
@article{lin399658,
title = {Effects of alcohol on gut microbiome in adolescent and adult MMTV-Wnt1 mice.},
author = {Li H, Meza LA, Shahi SK, Zhang Z, Wen W, Hu D, Lin H, Mangalam AK, Luo J.},
journal = {Front Oncol},
year = {2025},
doi = {10.3389/fonc.2025.1557040},
pmid = {40740867}
}
@article{lin81321,
title = {Quantifying the varying harvest of fermentation products from the human gut microbiota.},
author = {Arnoldini M, Sharma R, Moresi C, Chure G, Chabbey J, Slack E, Cremer J.},
journal = {Cell},
year = {2025},
doi = {10.1016/j.cell.2025.07.005},
pmid = {40744013}
}
@article{lin400021,
title = {The porphyran degradation system is complete, phylogenetically and geographically diverse across the gut microbiota of East Asian populations.},
author = {Segurel L, Ulaganathan TS, Mathieu S, Loiodice M, Poulet L, Drouillard S, Cygler M, Helbert W.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0329457},
pmid = {40748897}
}
@article{lin399755,
title = {StrainR2 accurately deconvolutes strain-level abundances in synthetic microbial communities.},
author = {Heber K, Tian S, Betancurt-Anzola D, Koo H, Bisanz JE.},
journal = {Bioinformatics},
year = {2025},
doi = {10.1093/bioinformatics/btaf440},
pmid = {40794845}
}
@article{lin399525,
title = {The association between gut microbiota composition and cardiometabolic parameters in healthy adults.},
author = {Okalin SS, Arslan N, Demiray Gurbuz E, Arayici M, Kirca ND, Ozel Demiralp D, Dereli-Akdeniz D, Akan P, Ozkutuk AA.},
journal = {BMC Microbiol},
year = {2025},
doi = {10.1186/s12866-025-04261-4},
pmid = {40813961}
}
@article{lin399727,
title = {Structure-dependent degradation of milk oligosaccharides by newly isolated intestinal commensal bacterial strains from suckling piglets and rabbits.},
author = {Rumeau M, Chadi S, Pepke F, Beaumont M, Vicente CM, Juppeau A, Vandecasteele C, Cauquil L, Pascal G, Langella P, Knudsen C, Combes S, Martin R.},
journal = {BMC Microbiol},
year = {2025},
doi = {10.1186/s12866-025-04205-y},
pmid = {40819039}
}
@article{lin399895,
title = {Impact of a defined bacterial community including and excluding Megamonas hypermegale on broiler cecal microbiota and resistance to Salmonella infection.},
author = {Schultz Marcolla C, Ju T, Ten K, Sivakumar Sharma U, Moeun L, Willing BP.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.00948-25},
pmid = {40827876}
}
@article{lin399592,
title = {A rare case of Bilophila wadsworthia bacteremia presenting as multiple hepatic abscesses: A case report and literature review.},
author = {Han S, Krothapalli TR, Zafar SJ, Gautham S.},
journal = {IDCases},
year = {2025},
doi = {10.1016/j.idcr.2025.e02342},
pmid = {40832042}
}
@article{lin399946,
title = {The genetic diversity and populational specificity of the human gut virome at single-nucleotide resolution.},
author = {Wang X, Dong Q, Huang P, Yang S, Gao M, Zhang C, Zhang C, Deng Y, Huang Z, Ma B, Jiao Y, Zhou Y, Wu T, Zou H, Shi J, Sheng Y, Wang Y, Consortium C, Tang L, Hu S, Duan Y, Sun W, Chen W, Zhai Q, Kong X, Chen L.},
journal = {Microbiome},
year = {2025},
doi = {10.1186/s40168-025-02185-9},
pmid = {40836310}
}
@article{lin81322,
title = {Serotonergic and immunomodulatory properties of the psychobiotic candidate Bacteroides finegoldii UO.H1052 and its extracellular vesicles.},
author = {Yousuf B, Esmail GA, Nazemof N, Bouhlel NE, Minic Z, Hammami R.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.00891-25},
pmid = {40838741}
}
@article{lin399741,
title = {Inter-species and individualized biotransformation of five saponins by human being- and mouse-derived fecal microbiota.},
author = {Wei W, Li M, Pan L, Shao M, He X, Li Y, Sheng L, Zheng N, Li H.},
journal = {Chin Med},
year = {2025},
doi = {10.1186/s13020-025-01190-2},
pmid = {40855560}
}
@article{lin399836,
title = {De novo peptide databases enable protein-based stable isotope probing of microbial communities with up to species-level resolution.},
author = {Klaes S, White C, Alvarez-Cohen L, Adrian L, Ding C.},
journal = {Environ Microbiome},
year = {2025},
doi = {10.1186/s40793-025-00767-6},
pmid = {40859350}
}
@article{lin400165,
title = {Temporal response patterns of human gut microbiota to dietary fiber.},
author = {Lin X, Wang C, Liu B, Zhu Y, Zhai R, Zhang C.},
journal = {Imeta},
year = {2025},
doi = {10.1002/imt2.70046},
pmid = {40860439}
}
@article{lin399681,
title = {Genomic Insights into Emerging Multidrug-Resistant Chryseobacterium indologenes Strains: First Report from Thailand.},
author = {Yinsai O, Yuantrakul S, Srisithan P, Zhou W, Chittaprapan S, Intajak N, Kruayoo T, Khamnoi P, Tongjai S, Duangsonk K.},
journal = {Antibiotics (Basel)},
year = {2025},
doi = {10.3390/antibiotics14080746},
pmid = {40867941}
}
@article{lin399688,
title = {Gut microbiota-mediated modulation of host amino acid availability and metabolism.},
author = {Han Z, Zhao L, Hu Q, Hung I, Liu C, Liu S, Mei X, Zeng X, Bin P, Wang J.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2552345},
pmid = {40878016}
}
@article{lin399757,
title = {mbSparse: an autoencoder-based imputation method to address sparsity in microbiome data.},
author = {Qi C, Cai Y, He G, Qian K, Guo M, Cheng L.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2552347},
pmid = {40888610}
}
@article{lin399557,
title = {The gut microbiota's role in bulimia nervosa and binge eating disorder: etiological insights and therapeutic implications from a scoping review.},
author = {Tempia Valenta S, Atti AR, Marcolini F, Rossi Grauenfels D, Giovannardi G, Fanelli G, De Ronchi D.},
journal = {Neurosci Appl},
year = {2025},
doi = {10.1016/j.nsa.2025.105526},
pmid = {40910119}
}
@article{lin400000,
title = {Gut microbiota interplay with autophagy-EMT dynamics in colorectal cancer.},
author = {Vescovo T, Bontempi G, Bayat M, Piredda L, Fidaleo M, Strippoli R, Antonioli M.},
journal = {Front Cell Dev Biol},
year = {2025},
doi = {10.3389/fcell.2025.1608248},
pmid = {40917756}
}
@article{lin399892,
title = {The gut commensal Faecalibacterium hominis attenuates indole-AhR signaling and restores ASD-like behaviors with BTBR mice.},
author = {Yu Y, Wang Y, Zhang J, Li S, Wang Y, You X, Chen X, Du M, Xie L, Liu SJ.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1640149},
pmid = {40919211}
}
@article{lin399665,
title = {Use of proximity ligation shotgun metagenomics to investigate the dynamics of plasmids and bacteriophages in the gut microbiome following fecal microbiota transplantation.},
author = {Bryson S, Sisson Z, Nelson B, Grove J, Reister E, Liachko I, Auch B, Graiziger C, Khoruts A.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2559019},
pmid = {40948444}
}
@article{lin399882,
title = {Gut microbiota-metabolome remodeling associated with low bone mass: an integrated multi-omics study in fracture patients.},
author = {Zhao X, Wu B, Han P, Wang Z, Cao R, Chen S, Cheng C, Lian H, Zha Y, Li M.},
journal = {Front Mol Biosci},
year = {2025},
doi = {10.3389/fmolb.2025.1646361},
pmid = {40958777}
}
@article{lin399813,
title = {Combined metagenomic and metabolomic analyses reveal gut microbiota dysbiosis and metabolic dysfunction in pediatric neurodevelopmental disorders.},
author = {Wang Q, Luo Y, Mao C, Xiang X, Chen J.},
journal = {Front Immunol},
year = {2025},
doi = {10.3389/fimmu.2025.1645137},
pmid = {40963595}
}
@article{lin399756,
title = {Changes in antioxidant capacity and gut microbiota in mice after intake of camel milk.},
author = {Wang J, Ren W, Liu S, Li Z, Zeng Y, Meng J, Yao X.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1621031},
pmid = {40969552}
}
@article{lin400199,
title = {Comprehensive metagenomic and lipidomic analysis showed that baicalin could improve depressive behaviour in atherosclerotic mice by inhibiting nerve cell ferroptosis.},
author = {Ren P, Zhao Y, Li X, Xie J, Liao X, Luo Q, Liu X, Li J, Fan Y, Cheng X, Fu X, Zhou J, Wu X.},
journal = {Front Immunol},
year = {2025},
doi = {10.3389/fimmu.2025.1599570},
pmid = {40977701}
}
@article{lin399811,
title = {Characterization of gut microbiota and metabolites in individuals with constipation-predominant irritable bowel syndrome.},
author = {Wang YL, Xu XQ, Long YY, Cheng YL.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1617288},
pmid = {40980320}
}
@article{lin399599,
title = {Gut microbiota profile in adults with abdominal obesity and non-abdominal obesity: links to body composition and macronutrient intake in Semarang, Indonesia-a brief research report.},
author = {Fadhillah FS, Arafat FB, Maharani N, Fadhilah J, Zariyah H, Sobirin MA, Tsutsui H, Wibowo A, Juniarto AZ, Pramono A.},
journal = {Front Nutr},
year = {2025},
doi = {10.3389/fnut.2025.1648575},
pmid = {40989796}
}
@article{lin399925,
title = {Research status and development trends of probiotics in clinical applications.},
author = {Li Y, Yao Y, Zhang Z, Gan Y.},
journal = {Front Nutr},
year = {2025},
doi = {10.3389/fnut.2025.1650883},
pmid = {40995173}
}
@article{lin399714,
title = {Metabolic modeling links gut microbiota to metabolic markers of Parkinson's disease.},
author = {Hensen T, Thiele I.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2554195},
pmid = {40995781}
}
@article{lin399613,
title = {Assessment of ecological fidelity of human microbiome-associated mice in observational studies and an interventional trial.},
author = {Wong MK, Armstrong E, Heirali AA, Schneeberger PHH, Chen H, Cochrane K, Sherriff K, Allen-Vercoe E, Siu LL, Spreafico A, Coburn B.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.01904-25},
pmid = {40996271}
}
@article{lin400189,
title = {"Trust your gut": exploring the connection between gut microbiome dysbiosis and the advancement of Metabolic Associated Steatosis Liver Disease (MASLD)/Metabolic Associated Steatohepatitis (MASH): a systematic review of animal and human studies.},
author = {Bahitham W, Banoun Y, Aljahdali M, Almuaiqly G, Bahshwan SM, Aljahdali L, Sanai FM, Rosado AS, Sergi CM.},
journal = {Front Nutr},
year = {2025},
doi = {10.3389/fnut.2025.1637071},
pmid = {41001122}
}
@article{lin399577,
title = {Gut Microbiota in Adults with Chronic Widespread Pain: A Systematic Review.},
author = {Leong PY, Shi LH.},
journal = {Diseases},
year = {2025},
doi = {10.3390/diseases13090299},
pmid = {41002735}
}
@article{lin399644,
title = {Exploring the Intestinal Microbiota Profile in Prostate Cancer Patients and Healthy Controls.},
author = {Cocomazzi G, Villani A, Mencarelli G, Contu V, De Ruvo D, Virgili E, Marino F, Baldini GM, Binda E, Parmegiani L, Ciampaglia W, Capone L, Perri F, Cisternino A, Pazienza V, Panebianco C.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13092105},
pmid = {41011437}
}
@article{lin399640,
title = {Unraveling the links between estrogen and gut microbiota in sex-hormone driven cancers.},
author = {Tahri A, Amedei A.},
journal = {World J Clin Oncol},
year = {2025},
doi = {10.5306/wjco.v16.i9.108819},
pmid = {41024833}
}
@article{lin399962,
title = {Gut microbiota characterization in ageing, mild cognitive impairment, and Alzheimer's disease in the context of mediterranean lifestyle in a Spanish population.},
author = {Cabrera C, Carrion N, Mateo D, Vicens P, Pinzon A, Heredia L, Forcadell-Ferreres E, Pino M, Yerga B, Zaragoza J, Vicente-Pascual M, Moral A, Arco T, Arjo M, Martinez E, Galvez S, Lozano MJ, Torrente M.},
journal = {Alzheimers Res Ther},
year = {2025},
doi = {10.1186/s13195-025-01862-z},
pmid = {41029837}
}
@article{lin399570,
title = {A blueprint of synergistic effect in Crataegus pinnatifida and obesity-related gut microbiota against obesity via systems biology concept.},
author = {Xie J, Guan H, Liu M, Ding W.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0332038},
pmid = {41032481}
}
@article{lin399711,
title = {Moderate altitude exposure induced gut microbiota enterotype shifts impacting host serum metabolome and phenome.},
author = {Ma Y, Wang D, Yu X, Fan Y, Yang Z, Gao X, Huang X, Meng J, Cheng P, Liu X, Liu Z, Li X.},
journal = {BMC Microbiol},
year = {2025},
doi = {10.1186/s12866-025-04245-4},
pmid = {41039216}
}
@article{lin399692,
title = {MicroSTNet: a spatio-temporal graph-based framework for time-series microbiome analysis.},
author = {Gao S, Li L, Wang J, Wang Y, Dong Y.},
journal = {Microb Genom},
year = {2025},
doi = {10.1099/mgen.0.001519},
pmid = {41042689}
}
@article{lin399844,
title = {First insights into microbial changes within an Inflammatory Bowel Disease Family Cohort study.},
author = {Rausch P, Ratjen I, Tittmann L, Enderle J, Wacker EM, Jaeger K, Ruhlemann MC, Franzpotter K, Ellul P, Kruse R, Halfvarson J, Roggenbuck D, Ellinghaus D, Jacobs G, Krawczak M, Schreiber S, Bang C, Lieb W, Franke A.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2559119},
pmid = {41047557}
}
@article{lin399568,
title = {Concentrations of ciprofloxacin in food defined as safe alter the gut microbiome and ciprofloxacin susceptibility in humans: an interventional clinical study.},
author = {Manoharan-Basil S, Gestels Z, Abdellati S, Vanbaelen T, Van Den Bossche D, van Alebeek L, Van Herrewege Y, Poppe L, Vandenhove L, Bracke S, Smekens B, Jacobs B, Genbrugge E, Kenyon C.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-18714-3},
pmid = {41057417}
}
@article{lin399527,
title = {Rotavirus gastroenteritis complicating meningitis caused by Bacteroides uniformis detected using mNGS: a case report and literature review.},
author = {Cai ZZ, Zeng DM, Lei LW, Xiao S.},
journal = {Front Med (Lausanne)},
year = {2025},
doi = {10.3389/fmed.2025.1601953},
pmid = {41058622}
}
@article{lin400280,
title = {The specific hallmarks, emerging roles, key mechanisms, and clinical applications of intra-tumoral microbiota in human cancers.},
author = {Zhao T, Sun N, Ding J, Peng Z, Han F, Qi X.},
journal = {Genes Dis},
year = {2026},
doi = {10.1016/j.gendis.2025.101733},
pmid = {41069575}
}
@article{lin399652,
title = {Identification and characterization of two AA9 lytic polysaccharide monooxygenases isolated from the enzymatic arsenal in Phanerochaete chrysosporium.},
author = {Xu X, Chu CE, Li N, Sun XB, Han J, Xu Z, Liu Y, Wang JK, Zhang TT, Wang Q.},
journal = {Bioresour Bioprocess},
year = {2025},
doi = {10.1186/s40643-025-00950-0},
pmid = {41071422}
}
@article{lin399671,
title = {Decoding IBD progression: a dynamic biomarker atlas for personalized disease stratification.},
author = {Tao Y, Wang LF, Li P, Sun R, Li YJ, Sun MH, Zhang LJ, Yang LH, Jin JJ, Zhong XN.},
journal = {J Transl Med},
year = {2025},
doi = {10.1186/s12967-025-07024-x},
pmid = {41074150}
}
@article{lin399854,
title = {Thick vs. thin tongue coatings in hemodialysis patients: unveiling gut microbiome dysregulation and systemic health implications.},
author = {Wang Y, Zeng X, Wu M, Lu B, Wang J, Chen S, Zhang A, Huang M, Zhu Y, Liu H, Zhu F, Chen S, Zhou X, Zhao L, Liu J, Lin R.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1640429},
pmid = {41089330}
}
@article{lin399659,
title = {Triacetin and a Mushroom Blend Restore Butyrate Production by IBS Microbiomes Ex Vivo, Thus Promoting Barrier Integrity.},
author = {Van den Abbeele P, Poppe J, Baudot A, Vu LD.},
journal = {Int J Mol Sci},
year = {2025},
doi = {10.3390/ijms26199388},
pmid = {41096656}
}
@article{lin399694,
title = {Ginseng Polysaccharides Inhibit Aspergillus sydowii-Driven Lung Adenocarcinoma via Modulating Gut Microbiota-Bile Acid Metabolism Axis.},
author = {He J, Shu X, Pan H, Wang M, Song Y, Zhou F, Lian L, Chen L, Ma G, Zhao Y, Li R, Liu L.},
journal = {Cancers (Basel)},
year = {2025},
doi = {10.3390/cancers17193134},
pmid = {41097662}
}
@article{lin399780,
title = {Multiomics Integration Reveals Microbial Gene Interactions Shaping Host Responses in a DSS-Induced Colitis Mouse Model.},
author = {Hong HH, Lee SY, Jang DH, Ju SE, Shim JE, Kim TH, Kang HS, Kim SM.},
journal = {J Microbiol Biotechnol},
year = {2025},
doi = {10.4014/jmb.2507.07010},
pmid = {41110987}
}
@article{lin399958,
title = {Fibromyalgia diagnosis from a multi-omics approach: a gut feeling.},
author = {Duran-Gonzalez E, Ramirez-Tejero JA, Perez-Sanchez M, Morales-Torres C, Gomez-Morano R, Diaz-Lopez C, Martinez-Lara A, Cotan D.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1641185},
pmid = {41113645}
}
@article{lin399961,
title = {Comprehensive analysis of vaginal microbiota, metabolites, and inflammatory factors in preterm and term pregnancies.},
author = {Shen LP, Cai BJ, Guan JX, Peng T, Jin L.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1689494},
pmid = {41113649}
}
@article{lin399667,
title = {Gut microbiota alterations and their association with tumorigenic pathways in colorectal cancer: insights from a pooled analysis of 109 microbiome datasets.},
author = {Haque S, Bantun F, Jalal NA, Faidah H, Babalghith AO, Alobaidy MA, Aldairi AF, Ahmad F.},
journal = {Gut Pathog},
year = {2025},
doi = {10.1186/s13099-025-00712-5},
pmid = {41121269}
}
@article{lin399560,
title = {The circulating dihydrotestosterone/testosterone ratio is increased by gut microbial 5alpha-reductase activity in females.},
author = {Ohlsson C, Li L, Horkeby K, Lawenius L, Collden H, Sjogren K, Baldanzi G, Engstrom G, Arnlov J, Orho-Melander M, Fall T, Grahnemo L.},
journal = {EBioMedicine},
year = {2025},
doi = {10.1016/j.ebiom.2025.105978},
pmid = {41124778}
}
@article{lin399538,
title = {Investigating the relationship between intestinal microbiota and Th1/Th2/Th17 imbalance in subclinical hypothyroidism during the first half of pregnancy: a multi-omics approach.},
author = {Lin P, Xu Y, Sun Z, Li J, Ban Y, Zhang M, Wang Y, Zhang C.},
journal = {Gut Pathog},
year = {2025},
doi = {10.1186/s13099-025-00743-y},
pmid = {41131543}
}
@article{lin399522,
title = {Gut microbiota and bile acids changes in MASLD mice model with hepatic PLD1 knockout.},
author = {Zhao Y, Wang H, Lin W, Wang H, Cao LL.},
journal = {Acta Biochim Biophys Sin (Shanghai)},
year = {2025},
doi = {10.3724/abbs.2025183},
pmid = {41132089}
}
@article{lin399776,
title = {Evaluating the prebiotic activity of arabinogalactan on the human gut microbiota using 16S rRNA gene sequencing and Raman-activated cell sorting.},
author = {Rasoulimehrabani H, Khadem S, Hodzic A, Philipp M, Gallo R, Nikolov G, Seneca J, Ramesmayer J, Sivulic P, Berry D.},
journal = {Microbiome Res Rep},
year = {2025},
doi = {10.20517/mrr.2025.29},
pmid = {41133092}
}
@article{lin399590,
title = {High-altitude mountaineering induces adaptive gut microbiome shifts associated with dietary intake and performance markers.},
author = {Karpecka-Galka E, Zielinska K, Fraczek B, Labaj PP, Kosciolek T, Huminska-Lisowska K.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-22848-9},
pmid = {41145643}
}
@article{lin399852,
title = {Metagenomic Analysis of the Gastrointestinal Phageome and Incorporated Dysbiosis in Children with Persistent Diarrhea of Unknown Etiology in Vietnam.},
author = {Dao TK, Pham TTN, Nguyen HD, Dam QT, Phung TBT, Nguyen TVH, Nguyen TQ, Hoang KC, Do TH.},
journal = {Pathogens},
year = {2025},
doi = {10.3390/pathogens14100985},
pmid = {41156596}
}
@article{lin399700,
title = {Exploring compositional and predicted functional alterations of gut microbiota in H. pylori infection.},
author = {Soliman NS, Soliman MS, Aziz HSA, El-Kholy AA.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-22788-4},
pmid = {41162643}
}
@article{lin399641,
title = {Emphysematous gastritis: The silent storm within the stomach wall.},
author = {Aggarwal CS, Dahiya S, Kochhar S, Aggarwal K, Edgecombe L, Jeje T, Jain R.},
journal = {J Int Med Res},
year = {2025},
doi = {10.1177/03000605251389384},
pmid = {41170628}
}
@article{lin399987,
title = {Expanded gut microbial genomes from Chinese populations reveal population-specific genomic features related to human physiological traits.},
author = {Dong Q, Ma B, Zhou X, Huang P, Gao M, Yang S, Jiao Y, Zhou Y, Shi Z, Deng Q, Hua D, Wang X, Liu L, Zhang C, Zhang C, Kong M, He C, Wu T, Zou H, Shi J, Sheng Y, Wang Y, GMR Consortium, Tang L, Hu S, Zhong H, Sun W, Chen W, Zhai Q, Kong X, Zheng Y, Chen L.},
journal = {Genome Med},
year = {2025},
doi = {10.1186/s13073-025-01566-x},
pmid = {41174806}
}
@article{lin399787,
title = {Sevoflurane-induced gut microbiota dysbiosis drives adolescent neurobehavioral deficits in neonatal rats: Protective role of eicosapentaenoic acid.},
author = {Fan P, Wang K, Wei H, Yang L, Zhang S, Cheng Y, Li C, Zhang Y, Jia P, Zhang Y, Xun Y, Wang Y, Yang P, Zhang P, Wang N.},
journal = {iScience},
year = {2025},
doi = {10.1016/j.isci.2025.113657},
pmid = {41189596}
}
@article{lin399546,
title = {B.uniformis IM01-derived IAA alleviates asthma via AhR/NLRP3 pathways in mice.},
author = {He Y, Yang T, Mi J, He S, Yang Z, Lu S, Yue K, Huang Y, Song L, Xiao Y, Ren Z.},
journal = {Cell Mol Life Sci},
year = {2025},
doi = {10.1007/s00018-025-05910-7},
pmid = {41196415}
}
@article{lin399518,
title = {Gut microbiota composition and long-term physical activity in healthy older adults at high and low performance levels.},
author = {Fiorilli G, Medoro A, Viciani E, di Cagno A, Calcagno G, Di Costanzo A, Castagnetti A, Scapagnini G, Davinelli S.},
journal = {Exp Gerontol},
year = {2025},
doi = {10.1016/j.exger.2025.112957},
pmid = {41197841}
}
@article{lin399602,
title = {Baseline intestinal microbiota composition influences response to a real-world dietary fiber intervention.},
author = {Hoffmann Sarda FA, Giuntini EB, Oliveira A, Souza GS, Prado SBR, Taddei CR, Tadini CC, Bittinger K, Bushman FD, Menezes EW, Hoffmann C.},
journal = {NPJ Biofilms Microbiomes},
year = {2025},
doi = {10.1038/s41522-025-00817-4},
pmid = {41198696}
}
@article{lin399598,
title = {Gut microbiota dysbiosis and short-chain fatty acid depletion in phlegm-dampness polycystic ovary syndrome: a cross-sectional 16S rRNA sequencing analysis.},
author = {Xia XY, Chen Y, Zhang XJ, Wang J, Xu HY, Zhao R.},
journal = {BMC Endocr Disord},
year = {2025},
doi = {10.1186/s12902-025-02076-y},
pmid = {41214659}
}
@article{lin399899,
title = {Intestinal Dysbiosis Caused by Epithelial Fabp6 Gene Disruption Exacerbates Gut Inflammatory Disease.},
author = {Kwon K, Kim M, Jung Y, Yoon MY, Lee JY, Yoon SS, Rho M, Chung YW, Ryu JH.},
journal = {Immune Netw},
year = {2025},
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title = {Multi-omic profiling reveals distinct gut microbial and metabolic landscapes in golden snub-nosed monkeys under contrasting conservation strategies.},
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