@article{lin30005,
title = {Quantitative detection of Sphingomonas chlorophenolica in soil via competitive polymerase chain reaction.},
author = {van Elsas JD, Rosado AS, Wolters AC, Moore E, Karlson U},
journal = {J Appl Microbiol},
year = {1998},
doi = {10.1046/j.1365-2672.1998.853509.x},
pmid = {9750277}
}
@article{lin30004,
title = {Evidence that pcpA encodes 2,6-dichlorohydroquinone dioxygenase, the ring cleavage enzyme required for pentachlorophenol degradation in Sphingomonas chlorophenolica strain ATCC 39723.},
author = {Xu L, Resing K, Lawson SL, Babbitt PC, Copley SD},
journal = {Biochemistry},
year = {1999},
doi = {10.1021/bi990103y},
pmid = {10387005}
}
@article{lin30003,
title = {PcpA, which is involved in the degradation of pentachlorophenol in Sphingomonas chlorophenolica ATCC39723, is a novel type of ring-cleavage dioxygenase.},
author = {Ohtsubo Y, Miyauchi K, Kanda K, Hatta T, Kiyohara H, Senda T, Nagata Y, Mitsui Y, Takagi M},
journal = {FEBS Lett},
year = {1999},
doi = {10.1016/s0014-5793(99)01305-8},
pmid = {10526172}
}
@article{lin30002,
title = {Characterization of 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA) of Sphingomonas chlorophenolica ATCC 39723.},
author = {Xun L, Bohuslavek J, Cai M},
journal = {Biochem Biophys Res Commun},
year = {1999},
doi = {10.1006/bbrc.1999.1805},
pmid = {10600501}
}
@article{lin30001,
title = {Phosphorus-31 nuclear magnetic resonance study of the effect of pentachlorophenol (PCP) on the physiologies of PCP-degrading microorganisms.},
author = {Lohmeier-Vogel EM, Leung KT, Lee H, Trevors JT, Vogel HJ},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/AEM.67.8.3549-3556.2001},
pmid = {11472931}
}
@article{lin239747,
title = {Isolation and characterization of Novosphingobium sp. strain MT1, a dominant polychlorophenol-degrading strain in a groundwater bioremediation system.},
author = {Tiirola MA, Mannisto MK, Puhakka JA, Kulomaa MS.},
journal = {Appl Environ Microbiol},
year = {2002},
doi = {10.1128/aem.68.1.173-180.2002},
pmid = {11772624}
}
@article{lin30000,
title = {Organization and regulation of pentachlorophenol-degrading genes in Sphingobium chlorophenolicum ATCC 39723.},
author = {Cai M, Xun L},
journal = {J Bacteriol},
year = {2002},
doi = {10.1128/JB.184.17.4672-4680.2002},
pmid = {12169590}
}
@article{lin239741,
title = {Evidence for natural horizontal transfer of the pcpB gene in the evolution of polychlorophenol-degrading sphingomonads.},
author = {Tiirola MA, Wang H, Paulin L, Kulomaa MS.},
journal = {Appl Environ Microbiol},
year = {2002},
doi = {10.1128/aem.68.9.4495-4501.2002},
pmid = {12200305}
}
@article{lin29999,
title = {Characterization of tetrachlorohydroquinone reductive dehalogenase from Sphingomonas sp. UG30.},
author = {Habash MB, Beaudette LA, Cassidy MB, Leung KT, Hoang TA, Vogel HJ, Trevors JT, Lee H},
journal = {Biochem Biophys Res Commun},
year = {2002},
doi = {10.1016/s0006-291x(02)02711-0},
pmid = {12459186}
}
@article{lin29998,
title = {Subcellular localization of pentachlorophenol 4-monooxygenase in Sphingobium chlorophenolicum ATCC 39723.},
author = {Wang H, Marjomaki V, Ovod V, Kulomaa MS},
journal = {Biochem Biophys Res Commun},
year = {2002},
doi = {10.1016/s0006-291x(02)02719-5},
pmid = {12470635}
}
@article{lin239738,
title = {A previously unrecognized step in pentachlorophenol degradation in Sphingobium chlorophenolicum is catalyzed by tetrachlorobenzoquinone reductase (PcpD).},
author = {Dai M, Rogers JB, Warner JR, Copley SD.},
journal = {J Bacteriol},
year = {2003},
doi = {10.1128/jb.185.1.302-310.2003},
pmid = {12486067}
}
@article{lin239753,
title = {Roles of the enantioselective glutathione S-transferases in cleavage of beta-aryl ether.},
author = {Masai E, Ichimura A, Sato Y, Miyauchi K, Katayama Y, Fukuda M.},
journal = {J Bacteriol},
year = {2003},
doi = {10.1128/jb.185.6.1768-1775.2003},
pmid = {12618439}
}
@article{lin29997,
title = {Flocculation behavior of Sphingobium chlorophenolicum in degrading pentachlorophenol at different life stages.},
author = {Chang YI, Su CY},
journal = {Biotechnol Bioeng},
year = {2003},
doi = {10.1002/bit.10634},
pmid = {12701151}
}
@article{lin239751,
title = {Efficient degradation of 2,4,6-Trichlorophenol requires a set of catabolic genes related to tcp genes from Ralstonia eutropha JMP134(pJP4).},
author = {Matus V, Sanchez MA, Martinez M, Gonzalez B.},
journal = {Appl Environ Microbiol},
year = {2003},
doi = {10.1128/aem.69.12.7108-7115.2003},
pmid = {14660355}
}
@article{lin29996,
title = {Genome shuffling improves degradation of the anthropogenic pesticide pentachlorophenol by Sphingobium chlorophenolicum ATCC 39723.},
author = {Dai M, Copley SD},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/AEM.70.4.2391-2397.2004},
pmid = {15066836}
}
@article{lin29995,
title = {Green fluorescent protein as a marker for monitoring a pentachlorophenol degrader Sphingomonas chlorophenolica ATCC39723.},
author = {Oh ET, So JS, Kim BH, Kim JS, Koh SC},
journal = {J Microbiol},
year = {2004},
doi = {2081},
pmid = {15459656}
}
@article{lin239756,
title = {Genetic analysis of phenoxyalkanoic acid degradation in Sphingomonas herbicidovorans MH.},
author = {Muller TA, Byrde SM, Werlen C, van der Meer JR, Kohler HP.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.10.6066-6075.2004},
pmid = {15466552}
}
@article{lin239752,
title = {Dynamics of multiple lin gene expression in Sphingomonas paucimobilis B90A in response to different hexachlorocyclohexane isomers.},
author = {Suar M, van der Meer JR, Lawlor K, Holliger C, Lal R.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.11.6650-6656.2004},
pmid = {15528530}
}
@article{lin239743,
title = {Identification and characterization of genes involved in the downstream degradation pathway of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis UT26.},
author = {Endo R, Kamakura M, Miyauchi K, Fukuda M, Ohtsubo Y, Tsuda M, Nagata Y.},
journal = {J Bacteriol},
year = {2005},
doi = {10.1128/jb.187.3.847-853.2005},
pmid = {15659662}
}
@article{lin29994,
title = {Identification and characterization of hydroxyquinone hydratase activities from Sphingobium chlorophenolicum ATCC 39723.},
author = {Bohuslavek J, Chanama S, Crawford RL, Xun L},
journal = {Biodegradation},
year = {2005},
doi = {10.1007/s10532-004-2058-5},
pmid = {15865340}
}
@article{lin29992,
title = {Conversion of Sphingobium chlorophenolicum ATCC 39723 to a hexachlorobenzene degrader by metabolic engineering.},
author = {Yan DZ, Liu H, Zhou NY},
journal = {Appl Environ Microbiol},
year = {2006},
doi = {10.1128/AEM.72.3.2283-2286.2006},
pmid = {16517689}
}
@article{lin29991,
title = {Rhizoremediation of pentachlorophenol by Sphingobium chlorophenolicum ATCC 39723.},
author = {Dams RI, Paton GI, Killham K},
journal = {Chemosphere},
year = {2007},
doi = {10.1016/j.chemosphere.2007.02.014},
pmid = {17376504}
}
@article{lin29990,
title = {Molecular characterization of a novel ortho-nitrophenol catabolic gene cluster in Alcaligenes sp. strain NyZ215.},
author = {Xiao Y, Zhang JJ, Liu H, Zhou NY},
journal = {J Bacteriol},
year = {2007},
doi = {10.1128/JB.00654-07},
pmid = {17616586}
}
@article{lin29988,
title = {Maintenance role of a glutathionyl-hydroquinone lyase (PcpF) in pentachlorophenol degradation by Sphingobium chlorophenolicum ATCC 39723.},
author = {Huang Y, Xun R, Chen G, Xun L},
journal = {J Bacteriol},
year = {2008},
doi = {10.1128/JB.00489-08},
pmid = {18820023}
}
@article{lin239736,
title = {The Catalytic Product of Pentachlorophenol 4-Monooxygenase is Tetra-chlorohydroquinone rather than Tetrachlorobenzoquinone.},
author = {Su Y, Chen L, Bandy B, Yang J.},
journal = {Open Microbiol J},
year = {2008},
doi = {10.2174/1874285800802010100},
pmid = {19088919}
}
@article{lin29987,
title = {Cloning, overexpression, purification, and characterization of the maleylacetate reductase from Sphingobium chlorophenolicum strain ATCC 53874.},
author = {Chen L, Maloney K, Krol E, Zhu B, Yang J},
journal = {Curr Microbiol},
year = {2009},
doi = {10.1007/s00284-009-9377-z},
pmid = {19242755}
}
@article{lin239739,
title = {Biochemical characterization of the tetrachlorobenzoquinone reductase involved in the biodegradation of pentachlorophenol.},
author = {Chen L, Yang J.},
journal = {Int J Mol Sci},
year = {2008},
doi = {10.3390/ijms9030198},
pmid = {19325743}
}
@article{lin239742,
title = {Aerobic mineralization of hexachlorobenzene by newly isolated pentachloronitrobenzene-degrading Nocardioides sp. strain PD653.},
author = {Takagi K, Iwasaki A, Kamei I, Satsuma K, Yoshioka Y, Harada N.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.02329-08},
pmid = {19429557}
}
@article{lin239748,
title = {Evolution of efficient pathways for degradation of anthropogenic chemicals.},
author = {Copley SD.},
journal = {Nat Chem Biol},
year = {2009},
doi = {10.1038/nchembio.197},
pmid = {19620997}
}
@article{lin239750,
title = {Plant-associated bacterial degradation of toxic organic compounds in soil.},
author = {McGuinness M, Dowling D.},
journal = {Int J Environ Res Public Health},
year = {2009},
doi = {10.3390/ijerph6082226},
pmid = {19742157}
}
@article{lin29985,
title = {Determination of the active site of Sphingobium chlorophenolicum 2,6-dichlorohydroquinone dioxygenase (PcpA).},
author = {Machonkin TE, Holland PL, Smith KN, Liberman JS, Dinescu A, Cundari TR, Rocks SS},
journal = {J Biol Inorg Chem},
year = {2010},
doi = {10.1007/s00775-009-0602-9},
pmid = {19924449}
}
@article{lin239755,
title = {Biochemistry of microbial degradation of hexachlorocyclohexane and prospects for bioremediation.},
author = {Lal R, Pandey G, Sharma P, Kumari K, Malhotra S, Pandey R, Raina V, Kohler HP, Holliger C, Jackson C, Oakeshott JG.},
journal = {Microbiol Mol Biol Rev},
year = {2010},
doi = {10.1128/mmbr.00029-09},
pmid = {20197499}
}
@article{lin239746,
title = {S-Glutathionyl-(chloro)hydroquinone reductases: a novel class of glutathione transferases.},
author = {Xun L, Belchik SM, Xun R, Huang Y, Zhou H, Sanchez E, Kang C, Board PG.},
journal = {Biochem J},
year = {2010},
doi = {10.1042/bj20091863},
pmid = {20388120}
}
@article{lin239759,
title = {Complex function by design using spatially pre-structured synthetic microbial communities: degradation of pentachlorophenol in the presence of Hg(ii).},
author = {Kim HJ, Du W, Ismagilov RF.},
journal = {Integr Biol (Camb)},
year = {2011},
doi = {10.1039/c0ib00019a},
pmid = {20717565}
}
@article{lin239735,
title = {S-glutathionyl-(chloro)hydroquinone reductases: a new class of glutathione transferases functioning as oxidoreductases.},
author = {Belchik SM, Xun L.},
journal = {Drug Metab Rev},
year = {2011},
doi = {10.3109/03602532.2011.552909},
pmid = {21425927}
}
@article{lin29984,
title = {Substrate specificity of Sphingobium chlorophenolicum 2,6-dichlorohydroquinone 1,2-dioxygenase.},
author = {Machonkin TE, Doerner AE},
journal = {Biochemistry},
year = {2011},
doi = {10.1021/bi200855m},
pmid = {21870805}
}
@article{lin29983,
title = {Sphingobium chlorophenolicum dichlorohydroquinone dioxygenase (PcpA) is alkaline resistant and thermally stable.},
author = {Sun W, Sammynaiken R, Chen L, Maley J, Schatte G, Zhou Y, Yang J},
journal = {Int J Biol Sci},
year = {2011},
doi = {10.7150/ijbs.7.1171},
pmid = {22043174}
}
@article{lin239733,
title = {The whole genome sequence of Sphingobium chlorophenolicum L-1: insights into the evolution of the pentachlorophenol degradation pathway.},
author = {Copley SD, Rokicki J, Turner P, Daligault H, Nolan M, Land M.},
journal = {Genome Biol Evol},
year = {2012},
doi = {10.1093/gbe/evr137},
pmid = {22179583}
}
@article{lin239740,
title = {Pentachlorophenol hydroxylase, a poorly functioning enzyme required for degradation of pentachlorophenol by Sphingobium chlorophenolicum.},
author = {Hlouchova K, Rudolph J, Pietari JM, Behlen LS, Copley SD.},
journal = {Biochemistry},
year = {2012},
doi = {10.1021/bi300261p},
pmid = {22482720}
}
@article{lin239754,
title = {The enzymatic basis for pesticide bioremediation.},
author = {Scott C, Pandey G, Hartley CJ, Jackson CJ, Cheesman MJ, Taylor MC, Pandey R, Khurana JL, Teese M, Coppin CW, Weir KM, Jain RK, Lal R, Russell RJ, Oakeshott JG.},
journal = {Indian J Microbiol},
year = {2008},
doi = {10.1007/s12088-008-0007-4},
pmid = {23100701}
}
@article{lin239734,
title = {Sequestration of a highly reactive intermediate in an evolving pathway for degradation of pentachlorophenol.},
author = {Yadid I, Rudolph J, Hlouchova K, Copley SD.},
journal = {Proc Natl Acad Sci U S A},
year = {2013},
doi = {10.1073/pnas.1214052110},
pmid = {23676275}
}
@article{lin239749,
title = {Bacterial degradation of chlorophenols and their derivatives.},
author = {Arora PK, Bae H.},
journal = {Microb Cell Fact},
year = {2014},
doi = {10.1186/1475-2859-13-31},
pmid = {24589366}
}
@article{lin29982,
title = {Biodegradation of hexachlorobenzene by a constructed microbial consortium.},
author = {Yan DZ, Mao LQ, Li CZ, Liu J},
journal = {World J Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s11274-014-1789-7},
pmid = {25532745}
}
@article{lin239760,
title = {16S-23S rRNA Gene Intergenic Spacer Region Variability Helps Resolve Closely Related Sphingomonads.},
author = {Tokajian S, Issa N, Salloum T, Ibrahim J, Farah M.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.00149},
pmid = {26904019}
}
@article{lin239744,
title = {Identification of the hcb Gene Operon Involved in Catalyzing Aerobic Hexachlorobenzene Dechlorination in Nocardioides sp. Strain PD653.},
author = {Ito K, Takagi K, Iwasaki A, Tanaka N, Kanesaki Y, Martin-Laurent F, Igimi S.},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/aem.00824-17},
pmid = {28733287}
}
@article{lin239745,
title = {Diuron degradation by bacteria from soil of sugarcane crops.},
author = {Egea TC, da Silva R, Boscolo M, Rigonato J, Monteiro DA, Grunig D, da Silva H, van der Wielen F, Helmus R, Parsons JR, Gomes E.},
journal = {Heliyon},
year = {2017},
doi = {10.1016/j.heliyon.2017.e00471},
pmid = {29322098}
}
@article{lin29981,
title = {Roles of Two Glutathione-Dependent 3,6-Dichlorogentisate Dehalogenases in Rhizorhabdus dicambivorans Ndbn-20 in the Catabolism of the Herbicide Dicamba.},
author = {Li N, Tong RL, Yao L, Chen Q, Yan X, Ding DR, Qiu JG, He J, Jiang JD},
journal = {Appl Environ Microbiol},
year = {2018},
doi = {10.1128/AEM.00623-18},
pmid = {29934333}
}
@article{lin239758,
title = {Cyclodextrin-Based Polymer-Supported Bacterium for the Adsorption and in-situ Biodegradation of Phenolic Compounds.},
author = {Karoyo AH, Yang J, Wilson LD.},
journal = {Front Chem},
year = {2018},
doi = {10.3389/fchem.2018.00403},
pmid = {30255014}
}
@article{lin239737,
title = {Identification of the novel hcbB operon catalyzing the dechlorination of pentachlorophenol in the Gram-positive bacterium Nocardioides sp. strain PD653.},
author = {Ito K, Takagi K, Matsushima Y, Iwasaki A, Tanaka N, Kanesaki Y, Martin-Laurent Martin-Laurent FF, Igimi S.},
journal = {J Pestic Sci},
year = {2018},
doi = {10.1584/jpestics.d17-089},
pmid = {30363388}
}
@article{lin239757,
title = {Genome-Wide Analysis of Transcriptional Changes and Genes That Contribute to Fitness during Degradation of the Anthropogenic Pollutant Pentachlorophenol by Sphingobium chlorophenolicum.},
author = {Flood JJ, Copley SD.},
journal = {mSystems},
year = {2018},
doi = {10.1128/msystems.00275-18},
pmid = {30505947}
}
@article{lin29978,
title = {McbG, a LysR Family Transcriptional Regulator, Activates the mcbBCDEF Gene Cluster Involved in the Upstream Pathway of Carbaryl Degradation in Pseudomonas sp. Strain XWY-1.},
author = {Ke Z, Zhou Y, Jiang W, Zhang M, Wang H, Ren Y, Qiu J, Cheng M, Hong Q},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/AEM.02970-20},
pmid = {33579686}
}
@article{lin239731,
title = {Degradation strategies of pesticide residue: From chemicals to synthetic biology.},
author = {Ruomeng B, Meihao O, Siru Z, Shichen G, Yixian Z, Junhong C, Ruijie M, Yuan L, Gezhi X, Xingyu C, Shiyi Z, Aihui Z, Baishan F.},
journal = {Synth Syst Biotechnol},
year = {2023},
doi = {10.1016/j.synbio.2023.03.005},
pmid = {37122957}
}
@article{lin239732,
title = {An Intelligent Synthetic Bacterium for Chronological Toxicant Detection, Biodegradation, and Its Subsequent Suicide.},
author = {Liu H, Zhang L, Wang W, Hu H, Ouyang X, Xu P, Tang H.},
journal = {Adv Sci (Weinh)},
year = {2023},
doi = {10.1002/advs.202304318},
pmid = {37705081}
}