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title = {Hormonal Contraceptives and the Gut Microbiome in Female Athletes: Implications for Health, Performance, and Exercise-Related Physiological Adjustments},
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journal = {Cureus},
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title = {Alistipes onderdonkii sp. nov. and Alistipes shahii sp. nov., of human origin.},
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title = {Evolution and multiplicity of arginine decarboxylases in polyamine biosynthesis and essential role in Bacillus subtilis biofilm formation.},
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journal = {J Biol Chem},
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title = {Comparative evaluation of establishing a human gut microbial community within rodent models.},
author = {Wos-Oxley M, Bleich A, Oxley AP, Kahl S, Janus LM, Smoczek A, Nahrstedt H, Pils MC, Taudien S, Platzer M, Hedrich HJ, Medina E, Pieper DH.},
journal = {Gut Microbes},
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doi = {10.4161/gmic.19934},
pmid = {22572831}
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@article{lin238825,
title = {Diverse CRISPRs evolving in human microbiomes.},
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journal = {PLoS Genet},
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doi = {10.1371/journal.pgen.1002441},
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title = {Association of fecal microbial diversity and taxonomy with selected enzymatic functions.},
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journal = {PLoS One},
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doi = {10.1371/journal.pone.0039745},
pmid = {22761886}
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@article{lin238792,
title = {Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants.},
author = {Arias MC, Danchin EG, Coutinho P, Henrissat B, Ball S.},
journal = {Mob Genet Elements},
year = {2012},
doi = {10.4161/mge.20375},
pmid = {22934241}
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@article{lin238824,
title = {Toward an understanding of changes in diversity associated with fecal microbiome transplantation based on 16S rRNA gene deep sequencing.},
author = {Shahinas D, Silverman M, Sittler T, Chiu C, Kim P, Allen-Vercoe E, Weese S, Wong A, Low DE, Pillai DR.},
journal = {mBio},
year = {2012},
doi = {10.1128/mbio.00338-12},
pmid = {23093385}
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@article{lin238822,
title = {Gliding motility and Por secretion system genes are widespread among members of the phylum bacteroidetes.},
author = {McBride MJ, Zhu Y.},
journal = {J Bacteriol},
year = {2013},
doi = {10.1128/jb.01962-12},
pmid = {23123910}
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@article{lin238756,
title = {Genome sequence and description of Alistipes senegalensis sp. nov.},
author = {Mishra AK, Gimenez G, Lagier JC, Robert C, Raoult D, Fournier PE.},
journal = {Stand Genomic Sci},
year = {2012},
doi = {10.4056/sigs.2625821},
pmid = {23407265}
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@article{lin238829,
title = {Molecular diversity of rumen bacterial communities from tannin-rich and fiber-rich forage fed domestic Sika deer (Cervus nippon) in China.},
author = {Li ZP, Liu HL, Li GY, Bao K, Wang KY, Xu C, Yang YF, Yang FH, Wright AD.},
journal = {BMC Microbiol},
year = {2013},
doi = {10.1186/1471-2180-13-151},
pmid = {23834656}
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@article{lin238722,
title = {Non contiguous-finished genome sequence and description of Alistipes obesi sp. nov.},
author = {Hugon P, Ramasamy D, Lagier JC, Rivet R, Couderc C, Raoult D, Fournier PE.},
journal = {Stand Genomic Sci},
year = {2013},
doi = {10.4056/sigs.3336746},
pmid = {24019990}
}
@article{lin238821,
title = {Reconstructing the genomic content of microbiome taxa through shotgun metagenomic deconvolution.},
author = {Carr R, Shen-Orr SS, Borenstein E.},
journal = {PLoS Comput Biol},
year = {2013},
doi = {10.1371/journal.pcbi.1003292},
pmid = {24146609}
}
@article{lin238813,
title = {Microbial enterotypes, inferred by the prevotella-to-bacteroides ratio, remained stable during a 6-month randomized controlled diet intervention with the new nordic diet.},
author = {Roager HM, Licht TR, Poulsen SK, Larsen TM, Bahl MI.},
journal = {Appl Environ Microbiol},
year = {2014},
doi = {10.1128/aem.03549-13},
pmid = {24296500}
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@article{lin238807,
title = {Strain/species identification in metagenomes using genome-specific markers.},
author = {Tu Q, He Z, Zhou J.},
journal = {Nucleic Acids Res},
year = {2014},
doi = {10.1093/nar/gku138},
pmid = {24523352}
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@article{lin238835,
title = {Role of the microbiota in immunity and inflammation.},
author = {Belkaid Y, Hand TW.},
journal = {Cell},
year = {2014},
doi = {10.1016/j.cell.2014.03.011},
pmid = {24679531}
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@article{lin29539,
title = {Acetobacteroides hydrogenigenes gen. nov., sp. nov., an anaerobic hydrogen-producing bacterium in the family Rikenellaceae isolated from a reed swamp.},
author = {Su XL, Tian Q, Zhang J, Yuan XZ, Shi XS, Guo RB, Qiu YL},
journal = {Int J Syst Evol Microbiol},
year = {2014},
doi = {10.1099/ijs.0.063917-0},
pmid = {24899658}
}
@article{lin238780,
title = {Harnessing the intestinal microbiome for optimal therapeutic immunomodulation.},
author = {Viaud S, Daillere R, Boneca IG, Lepage P, Pittet MJ, Ghiringhelli F, Trinchieri G, Goldszmid R, Zitvogel L.},
journal = {Cancer Res},
year = {2014},
doi = {10.1158/0008-5472.can-14-0987},
pmid = {25074615}
}
@article{lin238801,
title = {Fecal microbial transplant effect on clinical outcomes and fecal microbiome in active Crohn's disease.},
author = {Suskind DL, Brittnacher MJ, Wahbeh G, Shaffer ML, Hayden HS, Qin X, Singh N, Damman CJ, Hager KR, Nielson H, Miller SI.},
journal = {Inflamm Bowel Dis},
year = {2015},
doi = {10.1097/mib.0000000000000307},
pmid = {25647155}
}
@article{lin238826,
title = {Inter-individual differences in the gene content of human gut bacterial species.},
author = {Zhu A, Sunagawa S, Mende DR, Bork P.},
journal = {Genome Biol},
year = {2015},
doi = {10.1186/s13059-015-0646-9},
pmid = {25896518}
}
@article{lin238663,
title = {Novel systems modeling methodology in comparative microbial metabolomics: identifying key enzymes and metabolites implicated in autism spectrum disorders.},
author = {Heberling C, Dhurjati P.},
journal = {Int J Mol Sci},
year = {2015},
doi = {10.3390/ijms16048949},
pmid = {25913376}
}
@article{lin238782,
title = {Insight into Dominant Cellulolytic Bacteria from Two Biogas Digesters and Their Glycoside Hydrolase Genes.},
author = {Wei Y, Zhou H, Zhang J, Zhang L, Geng A, Liu F, Zhao G, Wang S, Zhou Z, Yan X.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0129921},
pmid = {26070087}
}
@article{lin238750,
title = {Low Level Engraftment and Improvement following a Single Colonoscopic Administration of Fecal Microbiota to Patients with Ulcerative Colitis.},
author = {Damman CJ, Brittnacher MJ, Westerhoff M, Hayden HS, Radey M, Hager KR, Marquis SR, Miller SI, Zisman TL.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0133925},
pmid = {26288277}
}
@article{lin238833,
title = {Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements.},
author = {Coyne MJ, Roelofs KG, Comstock LE.},
journal = {BMC Genomics},
year = {2016},
doi = {10.1186/s12864-016-2377-z},
pmid = {26768901}
}
@article{lin238791,
title = {Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.},
author = {Dubinkina VB, Ischenko DS, Ulyantsev VI, Tyakht AV, Alexeev DG.},
journal = {BMC Bioinformatics},
year = {2016},
doi = {10.1186/s12859-015-0875-7},
pmid = {26774270}
}
@article{lin238595,
title = {Noncontiguous finished genome sequence and description of Gabonia massiliensis gen. nov., sp. nov.},
author = {Mourembou G, Rathored J, Ndjoyi-Mbiguino A, Lekana-Douki JB, Fenollar F, Robert C, Fournier PE, Raoult D, Lagier JC.},
journal = {New Microbes New Infect},
year = {2016},
doi = {10.1016/j.nmni.2015.11.002},
pmid = {26862432}
}
@article{lin238795,
title = {An Integrated Metabolomic and Microbiome Analysis Identified Specific Gut Microbiota Associated with Fecal Cholesterol and Coprostanol in Clostridium difficile Infection.},
author = {Antharam VC, McEwen DC, Garrett TJ, Dossey AT, Li EC, Kozlov AN, Mesbah Z, Wang GP.},
journal = {PLoS One},
year = {2016},
doi = {10.1371/journal.pone.0148824},
pmid = {26871580}
}
@article{lin238832,
title = {Probiotics modulated gut microbiota suppresses hepatocellular carcinoma growth in mice.},
author = {Li J, Sung CY, Lee N, Ni Y, Pihlajamaki J, Panagiotou G, El-Nezami H.},
journal = {Proc Natl Acad Sci U S A},
year = {2016},
doi = {10.1073/pnas.1518189113},
pmid = {26884164}
}
@article{lin238814,
title = {Characterization of CRISPR RNA transcription by exploiting stranded metatranscriptomic data.},
author = {Ye Y, Zhang Q.},
journal = {RNA},
year = {2016},
doi = {10.1261/rna.055988.116},
pmid = {27190232}
}
@article{lin238804,
title = {Biochemical Characterization of a Family 15 Carbohydrate Esterase from a Bacterial Marine Arctic Metagenome.},
author = {De Santi C, Willassen NP, Williamson A.},
journal = {PLoS One},
year = {2016},
doi = {10.1371/journal.pone.0159345},
pmid = {27433797}
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@article{lin238809,
title = {Structural insights from a novel invertebrate triosephosphate isomerase from Litopenaeus vannamei.},
author = {Lopez-Zavala AA, Carrasco-Miranda JS, Ramirez-Aguirre CD, Lopez-Hidalgo M, Benitez-Cardoza CG, Ochoa-Leyva A, Cardona-Felix CS, Diaz-Quezada C, Rudino-Pinera E, Sotelo-Mundo RR, Brieba LG.},
journal = {Biochim Biophys Acta},
year = {2016},
doi = {10.1016/j.bbapap.2016.09.002},
pmid = {27614148}
}
@article{lin238817,
title = {Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the Gut Microbiome.},
author = {Xie H, Guo R, Zhong H, Feng Q, Lan Z, Qin B, Ward KJ, Jackson MA, Xia Y, Chen X, Chen B, Xia H, Xu C, Li F, Xu X, Al-Aama JY, Yang H, Wang J, Kristiansen K, Wang J, Steves CJ, Bell JT, Li J, Spector TD, Jia H.},
journal = {Cell Syst},
year = {2016},
doi = {10.1016/j.cels.2016.10.004},
pmid = {27818083}
}
@article{lin238837,
title = {Genome-Based Taxonomic Classification of Bacteroidetes.},
author = {Hahnke RL, Meier-Kolthoff JP, Garcia-Lopez M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Goker M.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.02003},
pmid = {28066339}
}
@article{lin238803,
title = {Carcinogenesis and therapeutics: the microbiota perspective.},
author = {Tsilimigras MC, Fodor A, Jobin C.},
journal = {Nat Microbiol},
year = {2017},
doi = {10.1038/nmicrobiol.2017.8},
pmid = {28225000}
}
@article{lin362014,
title = {Microbial community structure in a biogas digester utilizing the marine energy crop Saccharina latissima.},
author = {Pope PB, Vivekanand V, Eijsink VG, Horn SJ.},
journal = {3 Biotech},
year = {2013},
doi = {10.1007/s13205-012-0097-x},
pmid = {28324331}
}
@article{lin238790,
title = {Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson's disease patients.},
author = {Bedarf JR, Hildebrand F, Coelho LP, Sunagawa S, Bahram M, Goeser F, Bork P, Wullner U.},
journal = {Genome Med},
year = {2017},
doi = {10.1186/s13073-017-0428-y},
pmid = {28449715}
}
@article{lin238506,
title = {Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets.},
author = {Walker A, Pfitzner B, Harir M, Schaubeck M, Calasan J, Heinzmann SS, Turaev D, Rattei T, Endesfelder D, Castell WZ, Haller D, Schmid M, Hartmann A, Schmitt-Kopplin P.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/s41598-017-10369-z},
pmid = {28887494}
}
@article{lin238816,
title = {The gut microbiome in atherosclerotic cardiovascular disease.},
author = {Jie Z, Xia H, Zhong SL, Feng Q, Li S, Liang S, Zhong H, Liu Z, Gao Y, Zhao H, Zhang D, Su Z, Fang Z, Lan Z, Li J, Xiao L, Li J, Li R, Li X, Li F, Ren H, Huang Y, Peng Y, Li G, Wen B, Dong B, Chen JY, Geng QS, Zhang ZW, Yang H, Wang J, Wang J, Zhang X, Madsen L, Brix S, Ning G, Xu X, Liu X, Hou Y, Jia H, He K, Kristiansen K.},
journal = {Nat Commun},
year = {2017},
doi = {10.1038/s41467-017-00900-1},
pmid = {29018189}
}
@article{lin238787,
title = {Gut Microbiota in Human Systemic Lupus Erythematosus and a Mouse Model of Lupus.},
author = {Luo XM, Edwards MR, Mu Q, Yu Y, Vieson MD, Reilly CM, Ahmed SA, Bankole AA.},
journal = {Appl Environ Microbiol},
year = {2018},
doi = {10.1128/aem.02288-17},
pmid = {29196292}
}
@article{lin238754,
title = {An insight into intestinal mucosal microbiota disruption after stroke.},
author = {Stanley D, Moore RJ, Wong CHY.},
journal = {Sci Rep},
year = {2018},
doi = {10.1038/s41598-017-18904-8},
pmid = {29330443}
}
@article{lin238692,
title = {Microbial effects of part-stream low-frequency ultrasonic pretreatment on sludge anaerobic digestion as revealed by high-throughput sequencing-based metagenomics and metatranscriptomics.},
author = {Xia Y, Yang C, Zhang T.},
journal = {Biotechnol Biofuels},
year = {2018},
doi = {10.1186/s13068-018-1042-y},
pmid = {29483940}
}
@article{lin238800,
title = {Impact of a 3-Months Vegetarian Diet on the Gut Microbiota and Immune Repertoire.},
author = {Zhang C, Bjorkman A, Cai K, Liu G, Wang C, Li Y, Xia H, Sun L, Kristiansen K, Wang J, Han J, Hammarstrom L, Pan-Hammarstrom Q.},
journal = {Front Immunol},
year = {2018},
doi = {10.3389/fimmu.2018.00908},
pmid = {29755475}
}
@article{lin238799,
title = {Gut microbes contribute to variation in solid organ transplant outcomes in mice.},
author = {McIntosh CM, Chen L, Shaiber A, Eren AM, Alegre ML.},
journal = {Microbiome},
year = {2018},
doi = {10.1186/s40168-018-0474-8},
pmid = {29793539}
}
@article{lin238812,
title = {Changes of Colonic Bacterial Composition in Parkinson's Disease and Other Neurodegenerative Diseases.},
author = {Gerhardt S, Mohajeri MH.},
journal = {Nutrients},
year = {2018},
doi = {10.3390/nu10060708},
pmid = {29857583}
}
@article{lin238811,
title = {Major microbiota dysbiosis in severe obesity: fate after bariatric surgery.},
author = {Aron-Wisnewsky J, Prifti E, Belda E, Ichou F, Kayser BD, Dao MC, Verger EO, Hedjazi L, Bouillot JL, Chevallier JM, Pons N, Le Chatelier E, Levenez F, Ehrlich SD, Dore J, Zucker JD, Clement K.},
journal = {Gut},
year = {2019},
doi = {10.1136/gutjnl-2018-316103},
pmid = {29899081}
}
@article{lin238700,
title = {When old metagenomic data meet newly sequenced genomes, a case study.},
author = {Li X, Naser SA, Khaled A, Hu H, Li X.},
journal = {PLoS One},
year = {2018},
doi = {10.1371/journal.pone.0198773},
pmid = {29902201}
}
@article{lin238806,
title = {The Glutaminase-Dependent Acid Resistance System: Qualitative and Quantitative Assays and Analysis of Its Distribution in Enteric Bacteria.},
author = {Pennacchietti E, D'Alonzo C, Freddi L, Occhialini A, De Biase D.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.02869},
pmid = {30498489}
}
@article{lin238828,
title = {Gut microbiome structure and metabolic activity in inflammatory bowel disease.},
author = {Franzosa EA, Sirota-Madi A, Avila-Pacheco J, Fornelos N, Haiser HJ, Reinker S, Vatanen T, Hall AB, Mallick H, McIver LJ, Sauk JS, Wilson RG, Stevens BW, Scott JM, Pierce K, Deik AA, Bullock K, Imhann F, Porter JA, Zhernakova A, Fu J, Weersma RK, Wijmenga C, Clish CB, Vlamakis H, Huttenhower C, Xavier RJ.},
journal = {Nat Microbiol},
year = {2019},
doi = {10.1038/s41564-018-0306-4},
pmid = {30531976}
}
@article{lin238777,
title = {Disorganized Gut Microbiome Contributed to Liver Cirrhosis Progression: A Meta-Omics-Based Study.},
author = {Shao L, Ling Z, Chen D, Liu Y, Yang F, Li L.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.03166},
pmid = {30631318}
}
@article{lin238830,
title = {Evolutionary dynamics of bacteria in the gut microbiome within and across hosts.},
author = {Garud NR, Good BH, Hallatschek O, Pollard KS.},
journal = {PLoS Biol},
year = {2019},
doi = {10.1371/journal.pbio.3000102},
pmid = {30673701}
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@article{lin238752,
title = {CRISPRs for Strain Tracking and Their Application to Microbiota Transplantation Data Analysis.},
author = {Lam TJ, Ye Y.},
journal = {CRISPR J},
year = {2019},
doi = {10.1089/crispr.2018.0046},
pmid = {30820491}
}
@article{lin238823,
title = {Fasting-Mimicking Diet Modulates Microbiota and Promotes Intestinal Regeneration to Reduce Inflammatory Bowel Disease Pathology.},
author = {Rangan P, Choi I, Wei M, Navarrete G, Guen E, Brandhorst S, Enyati N, Pasia G, Maesincee D, Ocon V, Abdulridha M, Longo VD.},
journal = {Cell Rep},
year = {2019},
doi = {10.1016/j.celrep.2019.02.019},
pmid = {30840892}
}
@article{lin238510,
title = {Chitosan Oligosaccharides Show Protective Effects in Coronary Heart Disease by Improving Antioxidant Capacity via the Increase in Intestinal Probiotics.},
author = {Jiang T, Xing X, Zhang L, Liu Z, Zhao J, Liu X.},
journal = {Oxid Med Cell Longev},
year = {2019},
doi = {10.1155/2019/7658052},
pmid = {30984339}
}
@article{lin238783,
title = {Major Traditional Probiotics: Comparative Genomic Analyses and Roles in Gut Microbiome of Eight Cohorts.},
author = {Luo G, Li B, Yang C, Wang Y, Bian X, Li W, Liu F, Huo G.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.00712},
pmid = {31024492}
}
@article{lin238761,
title = {Effect of Diet Change on Gut Microbiota: Observational Pilot Study of Four Urban Couples.},
author = {Roh Y, Lee J, Kim WG, Yi G, Kim BK, Oh B.},
journal = {J Obes Metab Syndr},
year = {2017},
doi = {10.7570/jomes.2017.26.4.257},
pmid = {31089528}
}
@article{lin238797,
title = {Donor metabolic characteristics drive effects of faecal microbiota transplantation on recipient insulin sensitivity, energy expenditure and intestinal transit time.},
author = {de Groot P, Scheithauer T, Bakker GJ, Prodan A, Levin E, Khan MT, Herrema H, Ackermans M, Serlie MJM, de Brauw M, Levels JHM, Sales A, Gerdes VE, Stahlman M, Schimmel AWM, Dallinga-Thie G, Bergman JJ, Holleman F, Hoekstra JBL, Groen A, Backhed F, Nieuwdorp M.},
journal = {Gut},
year = {2020},
doi = {10.1136/gutjnl-2019-318320},
pmid = {31147381}
}
@article{lin238688,
title = {Combination Therapy of TGF-beta Blockade and Commensal-derived Probiotics Provides Enhanced Antitumor Immune Response and Tumor Suppression.},
author = {Shi L, Sheng J, Wang M, Luo H, Zhu J, Zhang B, Liu Z, Yang X.},
journal = {Theranostics},
year = {2019},
doi = {10.7150/thno.35131},
pmid = {31281535}
}
@article{lin238796,
title = {Commensals and Foodborne Pathogens can Arbitrate Epithelial-carcinogenesis.},
author = {Woappi Y, Singh OV.},
journal = {Br Microbiol Res J},
year = {2016},
doi = {10.9734/bmrj/2016/26690},
pmid = {31456935}
}
@article{lin238793,
title = {Integrated Meta-omics Reveals a Fungus-Associated Bacteriome and Distinct Functional Pathways in Clostridioides difficile Infection.},
author = {Stewart DB, Wright JR, Fowler M, McLimans CJ, Tokarev V, Amaniera I, Baker O, Wong HT, Brabec J, Drucker R, Lamendella R.},
journal = {mSphere},
year = {2019},
doi = {10.1128/msphere.00454-19},
pmid = {31462412}
}
@article{lin238808,
title = {Interleukin-36 cytokines alter the intestinal microbiome and can protect against obesity and metabolic dysfunction.},
author = {Giannoudaki E, Hernandez-Santana YE, Mulfaul K, Doyle SL, Hams E, Fallon PG, Mat A, O'Shea D, Kopf M, Hogan AE, Walsh PT.},
journal = {Nat Commun},
year = {2019},
doi = {10.1038/s41467-019-11944-w},
pmid = {31488830}
}
@article{lin238831,
title = {Microbiome as an Immunological Modifier.},
author = {Kumar M, Singh P, Murugesan S, Vetizou M, McCulloch J, Badger JH, Trinchieri G, Al Khodor S.},
journal = {Methods Mol Biol},
year = {2020},
doi = {10.1007/978-1-4939-9773-2_27},
pmid = {31502171}
}
@article{lin238802,
title = {Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples.},
author = {Tarallo S, Ferrero G, Gallo G, Francavilla A, Clerico G, Realis Luc A, Manghi P, Thomas AM, Vineis P, Segata N, Pardini B, Naccarati A, Cordero F.},
journal = {mSystems},
year = {2019},
doi = {10.1128/msystems.00289-19},
pmid = {31530647}
}
@article{lin238577,
title = {Correlation between invasive microbiota in margin-surrounding mucosa and anastomotic healing in patients with colorectal cancer.},
author = {Li YD, He KX, Zhu WF.},
journal = {World J Gastrointest Oncol},
year = {2019},
doi = {10.4251/wjgo.v11.i9.717},
pmid = {31558976}
}
@article{lin29538,
title = {Alistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov.},
author = {Sakamoto M, Ikeyama N, Ogata Y, Suda W, Iino T, Hattori M, Ohkuma M},
journal = {Int J Syst Evol Microbiol},
year = {2020},
doi = {10.1099/ijsem.0.003778},
pmid = {31633480}
}
@article{lin238716,
title = {Sharing of gut microbial strains between selected individual sets of twins cohabitating for decades.},
author = {Koo H, Hakim JA, Crossman DK, Lefkowitz EJ, Morrow CD.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0226111},
pmid = {31805145}
}
@article{lin238819,
title = {Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease.},
author = {Fornelos N, Franzosa EA, Bishai J, Annand JW, Oka A, Lloyd-Price J, Arthur TD, Garner A, Avila-Pacheco J, Haiser HJ, Tolonen AC, Porter JA, Clish CB, Sartor RB, Huttenhower C, Vlamakis H, Xavier RJ.},
journal = {Nat Microbiol},
year = {2020},
doi = {10.1038/s41564-019-0655-7},
pmid = {31959971}
}
@article{lin238763,
title = {Probiotics maintain the intestinal microbiome homeostasis of the sailors during a long sea voyage.},
author = {Zhang J, Zhao J, Jin H, Lv R, Shi H, De G, Yang B, Sun Z, Zhang H.},
journal = {Gut Microbes},
year = {2020},
doi = {10.1080/19490976.2020.1722054},
pmid = {32079472}
}
@article{lin238748,
title = {Probiotic-directed modulation of gut microbiota is basal microbiome dependent.},
author = {Hou Q, Zhao F, Liu W, Lv R, Khine WWT, Han J, Sun Z, Lee YK, Zhang H.},
journal = {Gut Microbes},
year = {2020},
doi = {10.1080/19490976.2020.1736974},
pmid = {32200683}
}
@article{lin238758,
title = {Structure of the Mucosal and Stool Microbiome in Lynch Syndrome.},
author = {Yan Y, Drew DA, Markowitz A, Lloyd-Price J, Abu-Ali G, Nguyen LH, Tran C, Chung DC, Gilpin KK, Meixell D, Parziale M, Schuck M, Patel Z, Richter JM, Kelsey PB, Garrett WS, Chan AT, Stadler ZK, Huttenhower C.},
journal = {Cell Host Microbe},
year = {2020},
doi = {10.1016/j.chom.2020.03.005},
pmid = {32240601}
}
@article{lin238715,
title = {Aberrant gut microbiota alters host metabolome and impacts renal failure in humans and rodents.},
author = {Wang X, Yang S, Li S, Zhao L, Hao Y, Qin J, Zhang L, Zhang C, Bian W, Zuo L, Gao X, Zhu B, Lei XG, Gu Z, Cui W, Xu X, Li Z, Zhu B, Li Y, Chen S, Guo H, Zhang H, Sun J, Zhang M, Hui Y, Zhang X, Liu X, Sun B, Wang L, Qiu Q, Zhang Y, Li X, Liu W, Xue R, Wu H, Shao D, Li J, Zhou Y, Li S, Yang R, Pedersen OB, Yu Z, Ehrlich SD, Ren F.},
journal = {Gut},
year = {2020},
doi = {10.1136/gutjnl-2019-319766},
pmid = {32241904}
}
@article{lin238794,
title = {Featured Gut Microbiomes Associated With the Progression of Chronic Hepatitis B Disease.},
author = {Chen Z, Xie Y, Zhou F, Zhang B, Wu J, Yang L, Xu S, Stedtfeld R, Chen Q, Liu J, Zhang X, Xu H, Ren J.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.00383},
pmid = {32265857}
}
@article{lin238741,
title = {A Soluble Fiber Diet Increases Bacteroides fragilis Group Abundance and Immunoglobulin A Production in the Gut.},
author = {Nakajima A, Sasaki T, Itoh K, Kitahara T, Takema Y, Hiramatsu K, Ishikawa D, Shibuya T, Kobayashi O, Osada T, Watanabe S, Nagahara A.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.00405-20},
pmid = {32332136}
}
@article{lin238674,
title = {MetagenoNets: comprehensive inference and meta-insights for microbial correlation networks.},
author = {Nagpal S, Singh R, Yadav D, Mande SS.},
journal = {Nucleic Acids Res},
year = {2020},
doi = {10.1093/nar/gkaa254},
pmid = {32338757}
}
@article{lin238771,
title = {Integrative metagenomic and metabolomic analyses reveal severity-specific signatures of gut microbiota in chronic kidney disease.},
author = {Wu IW, Gao SS, Chou HC, Yang HY, Chang LC, Kuo YL, Dinh MCV, Chung WH, Yang CW, Lai HC, Hsieh WP, Su SC.},
journal = {Theranostics},
year = {2020},
doi = {10.7150/thno.41725},
pmid = {32373220}
}
@article{lin238815,
title = {Overcoming resistance to anti-PD1 and anti-PD-L1 treatment in gastrointestinal malignancies.},
author = {Puccini A, Battaglin F, Iaia ML, Lenz HJ, Salem ME.},
journal = {J Immunother Cancer},
year = {2020},
doi = {10.1136/jitc-2019-000404},
pmid = {32393474}
}
@article{lin238738,
title = {The Genus Alistipes: Gut Bacteria With Emerging Implications to Inflammation, Cancer, and Mental Health.},
author = {Parker BJ, Wearsch PA, Veloo ACM, Rodriguez-Palacios A.},
journal = {Front Immunol},
year = {2020},
doi = {10.3389/fimmu.2020.00906},
pmid = {32582143}
}
@article{lin238582,
title = {Changes in the Intestinal Microbiome during a Multispecies Probiotic Intervention in Compensated Cirrhosis.},
author = {Horvath A, Durdevic M, Leber B, di Vora K, Rainer F, Krones E, Douschan P, Spindelboeck W, Durchschein F, Zollner G, Stauber RE, Fickert P, Stiegler P, Stadlbauer V.},
journal = {Nutrients},
year = {2020},
doi = {10.3390/nu12061874},
pmid = {32585997}
}
@article{lin238725,
title = {Effects of Jian Pi Qu Shi Formula on intestinal bacterial flora in patients with idiopathic membranous nephropathy: A prospective randomized controlled trial.},
author = {Lang R, Wang XH, Li AF, Liang Y, Zhu BC, Shi B, Zheng YQ, Yu RH.},
journal = {Chronic Dis Transl Med},
year = {2020},
doi = {10.1016/j.cdtm.2020.04.004},
pmid = {32596649}
}
@article{lin238765,
title = {Breast-Milk Microbiota Linked to Celiac Disease Development in Children: A Pilot Study From the PreventCD Cohort.},
author = {Benitez-Paez A, Olivares M, Szajewska H, Piescik-Lech M, Polanco I, Castillejo G, Nunez M, Ribes-Koninckx C, Korponay-Szabo IR, Koletzko S, Meijer CR, Mearin ML, Sanz Y.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01335},
pmid = {32655529}
}
@article{lin238739,
title = {Opportunistic detection of Fusobacterium nucleatum as a marker for the early gut microbial dysbiosis.},
author = {Huh JW, Roh TY.},
journal = {BMC Microbiol},
year = {2020},
doi = {10.1186/s12866-020-01887-4},
pmid = {32660414}
}
@article{lin238677,
title = {Metagenomics Study Reveals Changes in Gut Microbiota in Centenarians: A Cohort Study of Hainan Centenarians.},
author = {Luan Z, Sun G, Huang Y, Yang Y, Yang R, Li C, Wang T, Tan D, Qi S, Jun C, Wang C, Wang S, Zhao Y, Jing Y.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01474},
pmid = {32714309}
}
@article{lin238764,
title = {Fecal metagenomics and metabolomics reveal gut microbial changes after bariatric surgery.},
author = {Yu D, Shu XO, Howard EF, Long J, English WJ, Flynn CR.},
journal = {Surg Obes Relat Dis},
year = {2020},
doi = {10.1016/j.soard.2020.06.032},
pmid = {32747219}
}
@article{lin238751,
title = {Indolepropionic Acid, a Metabolite of the Microbiome, Has Cytostatic Properties in Breast Cancer by Activating AHR and PXR Receptors and Inducing Oxidative Stress.},
author = {Sari Z, Miko E, Kovacs T, Janko L, Csonka T, Lente G, Sebo E, Toth J, Toth D, Arkosy P, Boratko A, Ujlaki G, Torok M, Kovacs I, Szabo J, Kiss B, Mehes G, Goedert JJ, Bai P.},
journal = {Cancers (Basel)},
year = {2020},
doi = {10.3390/cancers12092411},
pmid = {32854297}
}
@article{lin238735,
title = {Modulation of gut mucosal microbiota as a mechanism of probiotics-based adjunctive therapy for ulcerative colitis.},
author = {Chen P, Xu H, Tang H, Zhao F, Yang C, Kwok LY, Cong C, Wu Y, Zhang W, Zhou X, Zhang H.},
journal = {Microb Biotechnol},
year = {2020},
doi = {10.1111/1751-7915.13661},
pmid = {32969200}
}
@article{lin238762,
title = {A metagenome-wide association study of gut microbiome and visceral fat accumulation.},
author = {Nie X, Chen J, Ma X, Ni Y, Shen Y, Yu H, Panagiotou G, Bao Y.},
journal = {Comput Struct Biotechnol J},
year = {2020},
doi = {10.1016/j.csbj.2020.09.026},
pmid = {33033580}
}
@article{lin238743,
title = {Relation of Gut Microbes and L-Thyroxine Through Altered Thyroxine Metabolism in Subclinical Hypothyroidism Subjects.},
author = {Yao Z, Zhao M, Gong Y, Chen W, Wang Q, Fu Y, Guo T, Zhao J, Gao L, Bo T.},
journal = {Front Cell Infect Microbiol},
year = {2020},
doi = {10.3389/fcimb.2020.00495},
pmid = {33072620}
}
@article{lin238820,
title = {State of the Art in the Culture of the Human Microbiota: New Interests and Strategies.},
author = {Tidjani Alou M, Naud S, Khelaifia S, Bonnet M, Lagier JC, Raoult D.},
journal = {Clin Microbiol Rev},
year = {2020},
doi = {10.1128/cmr.00129-19},
pmid = {33115723}
}
@article{lin238604,
title = {Enterococcus faecium R0026 Combined with Bacillus subtilis R0179 Prevent Obesity-Associated Hyperlipidemia and Modulate Gut Microbiota in C57BL/6 Mice.},
author = {Huang J, Huang J, Yin T, Lv H, Zhang P, Li H.},
journal = {J Microbiol Biotechnol},
year = {2021},
doi = {10.4014/jmb.2009.09005},
pmid = {33144552}
}
@article{lin238717,
title = {Effects of Fecal Microbiota Transplantation on Composition in Mice with CKD.},
author = {Barba C, Soulage CO, Caggiano G, Glorieux G, Fouque D, Koppe L.},
journal = {Toxins (Basel)},
year = {2020},
doi = {10.3390/toxins12120741},
pmid = {33255454}
}
@article{lin238634,
title = {The Gut-Muscle Axis in Older Subjects with Low Muscle Mass and Performance: A Proof of Concept Study Exploring Fecal Microbiota Composition and Function with Shotgun Metagenomics Sequencing.},
author = {Ticinesi A, Mancabelli L, Tagliaferri S, Nouvenne A, Milani C, Del Rio D, Lauretani F, Maggio MG, Ventura M, Meschi T.},
journal = {Int J Mol Sci},
year = {2020},
doi = {10.3390/ijms21238946},
pmid = {33255677}
}
@article{lin238757,
title = {Effects of Fecal Microbiome Transfer in Adolescents With Obesity: The Gut Bugs Randomized Controlled Trial.},
author = {Leong KSW, Jayasinghe TN, Wilson BC, Derraik JGB, Albert BB, Chiavaroli V, Svirskis DM, Beck KL, Conlon CA, Jiang Y, Schierding W, Vatanen T, Holland DJ, O'Sullivan JM, Cutfield WS.},
journal = {JAMA Netw Open},
year = {2020},
doi = {10.1001/jamanetworkopen.2020.30415},
pmid = {33346848}
}
@article{lin238653,
title = {Flexibility of Gut Microbiota in Ageing Individuals during Dietary Fiber Long-Chain Inulin Intake.},
author = {Kiewiet MBG, Elderman ME, El Aidy S, Burgerhof JGM, Visser H, Vaughan EE, Faas MM, de Vos P.},
journal = {Mol Nutr Food Res},
year = {2021},
doi = {10.1002/mnfr.202000390},
pmid = {33369019}
}
@article{lin238785,
title = {Microbiome and ischemic stroke: A systematic review.},
author = {Lee YT, Mohd Ismail NI, Wei LK.},
journal = {PLoS One},
year = {2021},
doi = {10.1371/journal.pone.0245038},
pmid = {33439913}
}
@article{lin238509,
title = {Methotrexate impacts conserved pathways in diverse human gut bacteria leading to decreased host immune activation.},
author = {Nayak RR, Alexander M, Deshpande I, Stapleton-Gray K, Rimal B, Patterson AD, Ubeda C, Scher JU, Turnbaugh PJ.},
journal = {Cell Host Microbe},
year = {2021},
doi = {10.1016/j.chom.2020.12.008},
pmid = {33440172}
}
@article{lin238798,
title = {The Role of Intestinal Bacteria and Gut-Brain Axis in Hepatic Encephalopathy.},
author = {Chen Z, Ruan J, Li D, Wang M, Han Z, Qiu W, Wu G.},
journal = {Front Cell Infect Microbiol},
year = {2020},
doi = {10.3389/fcimb.2020.595759},
pmid = {33553004}
}
@article{lin238726,
title = {A genome-wide association study for gut metagenome in Chinese adults illuminates complex diseases.},
author = {Liu X, Tang S, Zhong H, Tong X, Jie Z, Ding Q, Wang D, Guo R, Xiao L, Xu X, Yang H, Wang J, Zong Y, Liu W, Liu X, Zhang Y, Brix S, Kristiansen K, Hou Y, Jia H, Zhang T.},
journal = {Cell Discov},
year = {2021},
doi = {10.1038/s41421-020-00239-w},
pmid = {33563976}
}
@article{lin238775,
title = {DeepMicrobes: taxonomic classification for metagenomics with deep learning.},
author = {Liang Q, Bible PW, Liu Y, Zou B, Wei L.},
journal = {NAR Genom Bioinform},
year = {2020},
doi = {10.1093/nargab/lqaa009},
pmid = {33575556}
}
@article{lin238508,
title = {Degradation of the low-calorie sugar substitute 5-ketofructose by different bacteria.},
author = {Schiessl J, Kosciow K, Garschagen LS, Hoffmann JJ, Heymuth J, Franke T, Deppenmeier U.},
journal = {Appl Microbiol Biotechnol},
year = {2021},
doi = {10.1007/s00253-021-11168-3},
pmid = {33616697}
}
@article{lin238779,
title = {Integrated gut virome and bacteriome dynamics in COVID-19 patients.},
author = {Cao J, Wang C, Zhang Y, Lei G, Xu K, Zhao N, Lu J, Meng F, Yu L, Yan J, Bai C, Zhang S, Zhang N, Gong Y, Bi Y, Shi Y, Chen Z, Dai L, Wang J, Yang P.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1887722},
pmid = {33678150}
}
@article{lin238747,
title = {The high prevalence of Clostridioides difficile among nursing home elders associates with a dysbiotic microbiome.},
author = {Haran JP, Ward DV, Bhattarai SK, Loew E, Dutta P, Higgins A, McCormick BA, Bucci V.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1897209},
pmid = {33764826}
}
@article{lin238598,
title = {Are Faecal Microbiota Analyses on Species-Level Suitable Clinical Biomarkers? A Pilot Study in Subjects with Morbid Obesity.},
author = {Farup PG, Maseng MG.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9030664},
pmid = {33806783}
}
@article{lin238740,
title = {Comparison of Argentinean microbiota with other geographical populations reveals different taxonomic and functional signatures associated with obesity.},
author = {Pesoa SA, Portela N, Fernandez E, Elbarcha O, Gotteland M, Magne F.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-87365-x},
pmid = {33833357}
}
@article{lin238703,
title = {Genes Encoding Microbial Acyl Coenzyme A Binding Protein/Diazepam-Binding Inhibitor Orthologs Are Rare in the Human Gut Microbiome and Show No Links to Obesity.},
author = {Thomas AM, Asnicar F, Kroemer G, Segata N.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.00471-21},
pmid = {33837018}
}
@article{lin238749,
title = {Gut Microbiome Changes with Acute Diarrheal Disease in Urban Versus Rural Settings in Northern Ecuador.},
author = {Soto-Giron MJ, Pena-Gonzalez A, Hatt JK, Montero L, Paez M, Ortega E, Smith S, Cevallos W, Trueba G, Konstantinidis KT, Levy K.},
journal = {Am J Trop Med Hyg},
year = {2021},
doi = {10.4269/ajtmh.20-0831},
pmid = {33872206}
}
@article{lin238586,
title = {Bacteroidetes Species Are Correlated with Disease Activity in Ulcerative Colitis.},
author = {Nomura K, Ishikawa D, Okahara K, Ito S, Haga K, Takahashi M, Arakawa A, Shibuya T, Osada T, Kuwahara-Arai K, Kirikae T, Nagahara A.},
journal = {J Clin Med},
year = {2021},
doi = {10.3390/jcm10081749},
pmid = {33920646}
}
@article{lin238637,
title = {Interplay between diet and gut microbiome, and circulating concentrations of trimethylamine N-oxide: findings from a longitudinal cohort of US men.},
author = {Li J, Li Y, Ivey KL, Wang DD, Wilkinson JE, Franke A, Lee KH, Chan A, Huttenhower C, Hu FB, Rimm EB, Sun Q.},
journal = {Gut},
year = {2022},
doi = {10.1136/gutjnl-2020-322473},
pmid = {33926968}
}
@article{lin238786,
title = {Metagenomic Analysis of Common Intestinal Diseases Reveals Relationships among Microbial Signatures and Powers Multidisease Diagnostic Models.},
author = {Jiang P, Wu S, Luo Q, Zhao XM, Chen WH, Chen WH.},
journal = {mSystems},
year = {2021},
doi = {10.1128/msystems.00112-21},
pmid = {33947803}
}
@article{lin238535,
title = {The alpha-Helical Cap Domain of a Novel Esterase from Gut Alistipes shahii Shaping the Substrate-Binding Pocket.},
author = {Wei X, Wang YL, Wen BT, Liu SJ, Wang L, Sun L, Gu TY, Li Z, Bao Y, Fan SL, Zhou H, Wang F, Xin F.},
journal = {J Agric Food Chem},
year = {2021},
doi = {10.1021/acs.jafc.1c00940},
pmid = {33979121}
}
@article{lin238789,
title = {Maternal fecal microbiome predicts gestational age, birth weight and neonatal growth in rural Zimbabwe.},
author = {Gough EK, Edens TJ, Geum HM, Baharmand I, Gill SK, Robertson RC, Mutasa K, Ntozini R, Smith LE, Chasekwa B, Majo FD, Tavengwa NV, Mutasa B, Francis F, Carr L, Tome J, Stoltzfus RJ, Moulton LH, Prendergast AJ, Humphrey JH, Manges AR, Team ST.},
journal = {EBioMedicine},
year = {2021},
doi = {10.1016/j.ebiom.2021.103421},
pmid = {34139432}
}
@article{lin238746,
title = {Alterations in bile acid metabolizing gut microbiota and specific bile acid genes as a precision medicine to subclassify NAFLD.},
author = {Jiao N, Loomba R, Yang ZH, Wu D, Fang S, Bettencourt R, Lan P, Zhu R, Zhu L.},
journal = {Physiol Genomics},
year = {2021},
doi = {10.1152/physiolgenomics.00011.2021},
pmid = {34151600}
}
@article{lin238625,
title = {Dysbiotic gut microbiota in pancreatic cancer patients form correlation networks with the oral microbiota and prognostic factors.},
author = {Matsukawa H, Iida N, Kitamura K, Terashima T, Seishima J, Makino I, Kannon T, Hosomichi K, Yamashita T, Sakai Y, Honda M, Yamashita T, Mizukoshi E, Kaneko S.},
journal = {Am J Cancer Res},
year = {2021},
pmid = {34249452}
}
@article{lin238805,
title = {Microbiome signature and diversity regulates the level of energy production under anaerobic condition.},
author = {Rahman MS, Hoque MN, Puspo JA, Islam MR, Das N, Siddique MA, Hossain MA, Sultana M.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-99104-3},
pmid = {34611238}
}
@article{lin238539,
title = {Proteomic and microbial assessments on the effect of Antrodia cinnamomea in C57BL/6 mice.},
author = {Tsai YT, Ruan JW, Chang CS, Ko ML, Chou HC, Lin CC, Lin CM, Huang CT, Wei YS, Liao EC, Chen HY, Lin LH, Lin MW, Kao CY, Chan HL.},
journal = {Arch Biochem Biophys},
year = {2021},
doi = {10.1016/j.abb.2021.109058},
pmid = {34627749}
}
@article{lin238730,
title = {Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients.},
author = {Zeybel M, Altay O, Arif M, Li X, Yang H, Fredolini C, Akyildiz M, Saglam B, Gonenli MG, Ural D, Kim W, Schwenk JM, Zhang C, Shoaie S, Nielsen J, Uhlen M, Boren J, Mardinoglu A.},
journal = {Mol Syst Biol},
year = {2021},
doi = {10.15252/msb.202110459},
pmid = {34694070}
}
@article{lin238766,
title = {The gut microbiome as a biomarker of differential susceptibility to SARS-CoV-2.},
author = {Sarkar A, Harty S, Moeller AH, Klein SL, Erdman SE, Friston KJ, Carmody RN.},
journal = {Trends Mol Med},
year = {2021},
doi = {10.1016/j.molmed.2021.09.009},
pmid = {34756546}
}
@article{lin238767,
title = {Variation and transmission of the human gut microbiota across multiple familial generations.},
author = {Valles-Colomer M, Bacigalupe R, Vieira-Silva S, Suzuki S, Darzi Y, Tito RY, Yamada T, Segata N, Raes J, Falony G.},
journal = {Nat Microbiol},
year = {2022},
doi = {10.1038/s41564-021-01021-8},
pmid = {34969979}
}
@article{lin238769,
title = {Influence of probiotic bacteria on gut microbiota composition and gut wall function in an in-vitro model in patients with Parkinson's disease.},
author = {Ghyselinck J, Verstrepen L, Moens F, Van Den Abbeele P, Bruggeman A, Said J, Smith B, Barker LA, Jordan C, Leta V, Chaudhuri KR, Basit AW, Gaisford S.},
journal = {Int J Pharm X},
year = {2021},
doi = {10.1016/j.ijpx.2021.100087},
pmid = {34977556}
}
@article{lin238601,
title = {Characteristics of Gut Microbiota in Patients with GH-Secreting Pituitary Adenoma.},
author = {Lin B, Wang M, Gao R, Ye Z, Yu Y, He W, Qiao N, Ma Z, Ji C, Shi C, Zhou X, Wang Y, Zeng F, Zhang L, Gong W, Cao Z, Zhou P, Melnikov V, Ye H, Li Y, Zhang Z, He M, Qin H, Zhang Y.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.00425-21},
pmid = {35019688}
}
@article{lin238744,
title = {Gut microbiome alterations and gut barrier dysfunction are associated with host immune homeostasis in COVID-19 patients.},
author = {Sun Z, Song ZG, Liu C, Tan S, Lin S, Zhu J, Dai FH, Gao J, She JL, Mei Z, Lou T, Zheng JJ, Liu Y, He J, Zheng Y, Ding C, Qian F, Zheng Y, Chen YM.},
journal = {BMC Med},
year = {2022},
doi = {10.1186/s12916-021-02212-0},
pmid = {35045853}
}
@article{lin238668,
title = {Therapeutic Potential of Metabolites from Lactobacillus rhamnosus and Mare's Milk in the Treatment of Dysbiosis.},
author = {Kozhakhmetov S, Babenko D, Kozhakhmetova S, Tuyakova A, Nurgaziyev M, Nurgozhina A, Muhanbetganov N, Chulenbayeva L, Sergazy S, Gulyayev A, Aljofan M, Kushugulova A.},
journal = {Biomed Res Int},
year = {2022},
doi = {10.1155/2022/3851478},
pmid = {35132375}
}
@article{lin238742,
title = {Gut microbiota composition is associated with SARS-CoV-2 vaccine immunogenicity and adverse events.},
author = {Ng SC, Peng Y, Zhang L, Mok CK, Zhao S, Li A, Ching JY, Liu Y, Yan S, Chan DLS, Zhu J, Chen C, Fung AC, Wong KK, Hui DS, Chan FK, Tun HM.},
journal = {Gut},
year = {2022},
doi = {10.1136/gutjnl-2021-326563},
pmid = {35140064}
}
@article{lin238720,
title = {Dynamic Alterations of the Gut Microbial Pyrimidine and Purine Metabolism in the Development of Liver Cirrhosis.},
author = {Xiong Y, Wu L, Shao L, Wang Y, Huang Z, Huang X, Li C, Wu A, Liu Z, Fan X, Zhou P.},
journal = {Front Mol Biosci},
year = {2021},
doi = {10.3389/fmolb.2021.811399},
pmid = {35155569}
}
@article{lin238714,
title = {Bifidobacterium longum mediated tryptophan metabolism to improve atopic dermatitis via the gut-skin axis.},
author = {Fang Z, Pan T, Li L, Wang H, Zhu J, Zhang H, Zhao J, Chen W, Lu W.},
journal = {Gut Microbes},
year = {2022},
doi = {10.1080/19490976.2022.2044723},
pmid = {35239463}
}
@article{lin238661,
title = {Diagnostic, Prognostic, and Therapeutic Roles of Gut Microbiota in COVID-19: A Comprehensive Systematic Review.},
author = {Farsi Y, Tahvildari A, Arbabi M, Vazife F, Sechi LA, Shahidi Bonjar AH, Jamshidi P, Nasiri MJ, Mirsaeidi M.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.804644},
pmid = {35310853}
}
@article{lin238737,
title = {Dietary lignans, plasma enterolactone levels, and metabolic risk in men: exploring the role of the gut microbiome.},
author = {Li Y, Wang F, Li J, Ivey KL, Wilkinson JE, Wang DD, Li R, Liu G, Eliassen HA, Chan AT, Clish CB, Huttenhower C, Hu FB, Sun Q, Rimm EB.},
journal = {BMC Microbiol},
year = {2022},
doi = {10.1186/s12866-022-02495-0},
pmid = {35350985}
}
@article{lin238708,
title = {Associations between self-reported psychological symptom severity and gut microbiota: further support for the microgenderome.},
author = {Ganci M, Suleyman E, Butt H, Ball M.},
journal = {BMC Psychiatry},
year = {2022},
doi = {10.1186/s12888-022-03947-7},
pmid = {35501777}
}
@article{lin238719,
title = {Dysbiosis in the Gut Microbiota in Patients with Inflammatory Bowel Disease during Remission.},
author = {Pisani A, Rausch P, Bang C, Ellul S, Tabone T, Marantidis Cordina C, Zahra G, Franke A, Ellul P.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.00616-22},
pmid = {35532243}
}
@article{lin238770,
title = {Higher levels of Bifidobacteria and tumor necrosis factor in children with drug-resistant epilepsy are associated with anti-seizure response to the ketogenic diet.},
author = {Dahlin M, Singleton SS, David JA, Basuchoudhary A, Wickstrom R, Mazumder R, Prast-Nielsen S.},
journal = {EBioMedicine},
year = {2022},
doi = {10.1016/j.ebiom.2022.104061},
pmid = {35598439}
}
@article{lin238718,
title = {Trust Your Gut: The Association of Gut Microbiota and Liver Disease.},
author = {Manzoor R, Ahmed W, Afify N, Memon M, Yasin M, Memon H, Rustom M, Al Akeel M, Alhajri N.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10051045},
pmid = {35630487}
}
@article{lin238776,
title = {Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomes.},
author = {Zhang L, Jonscher KR, Zhang Z, Xiong Y, Mueller RS, Friedman JE, Pan C.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-31227-1},
pmid = {35729161}
}
@article{lin238599,
title = {Phenotyping of Fecal Microbiota of Winnie, a Rodent Model of Spontaneous Chronic Colitis, Reveals Specific Metabolic, Genotoxic, and Pro-inflammatory Properties.},
author = {Tala A, Guerra F, Resta SC, Calcagnile M, Barca A, Tredici SM, De Donno MD, Vacca M, Liso M, Chieppa M, De Angelis M, Verri T, Bozzetti MG, Bucci C, Alifano P.},
journal = {Inflammation},
year = {2022},
doi = {10.1007/s10753-022-01706-0},
pmid = {35732858}
}
@article{lin238670,
title = {Unveiling the Pathogenic Bacteria Causing Descending Necrotizing Mediastinitis.},
author = {Sun Q, Li Z, Wang P, Zhao J, Chen S, Sun M.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.873161},
pmid = {35755831}
}
@article{lin238624,
title = {Engineering the Active Site Pocket to Enhance the Catalytic Efficiency of a Novel Feruloyl Esterase Derived From Human Intestinal Bacteria Dorea formicigenerans.},
author = {Shen Y, Wang Y, Wei X, Wen B, Liu S, Tan H, Zhang J, Shao S, Xin F.},
journal = {Front Bioeng Biotechnol},
year = {2022},
doi = {10.3389/fbioe.2022.936914},
pmid = {35795165}
}
@article{lin238665,
title = {Gut-dependent inflammation and alterations of the intestinal microbiota in individuals with perinatal HIV exposure and different HIV serostatus.},
author = {Tincati C, Ficara M, Ferrari F, Augello M, Dotta L, Tagliabue C, Diana A, Camelli V, Iughetti L, Badolato R, Cellini M, Marchetti G,
on behalf of MIRROR Study Group (MIcRobiota study in pediatRic pOpulation gRoup)
.},
journal = {AIDS},
year = {2022},
doi = {10.1097/qad.0000000000003324},
pmid = {35848569}
}
@article{lin238695,
title = {Novel Insights into the Pig Gut Microbiome Using Metagenome-Assembled Genomes.},
author = {Holman DB, Kommadath A, Tingley JP, Abbott DW.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.02380-22},
pmid = {35880887}
}
@article{lin238679,
title = {Gut Microbiota Characteristics of People with Obesity by Meta-Analysis of Existing Datasets.},
author = {Gong J, Shen Y, Zhang H, Cao M, Guo M, He J, Zhang B, Xiao C.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14142993},
pmid = {35889949}
}
@article{lin238691,
title = {Human supplementation with Pediococcus acidilactici GR-1 decreases heavy metals levels through modifying the gut microbiota and metabolome.},
author = {Feng P, Yang J, Zhao S, Ling Z, Han R, Wu Y, Salama ES, Kakade A, Khan A, Jin W, Zhang W, Jeon BH, Fan J, Liu M, Mamtimin T, Liu P, Li X.},
journal = {NPJ Biofilms Microbiomes},
year = {2022},
doi = {10.1038/s41522-022-00326-8},
pmid = {35974020}
}
@article{lin238547,
title = {Fecal microbiota transplantation treatment for type 1 diabetes mellitus with malnutrition: a case report.},
author = {Xie YC, Jing XB, Chen X, Chen LZ, Zhang SH, Cai XB.},
journal = {Ther Adv Chronic Dis},
year = {2022},
doi = {10.1177/20406223221117449},
pmid = {36003287}
}
@article{lin238778,
title = {Akkermansia muciniphila upregulates genes involved in maintaining the intestinal barrier function via ADP-heptose-dependent activation of the ALPK1/TIFA pathway.},
author = {Martin-Gallausiaux C, Garcia-Weber D, Lashermes A, Larraufie P, Marinelli L, Teixeira V, Rolland A, Beguet-Crespel F, Brochard V, Quatremare T, Jamet A, Dore J, Gray-Owen SD, Blottiere HM, Arrieumerlou C, Lapaque N.},
journal = {Gut Microbes},
year = {2022},
doi = {10.1080/19490976.2022.2110639},
pmid = {36036242}
}
@article{lin238818,
title = {Design, construction, and in vivo augmentation of a complex gut microbiome.},
author = {Cheng AG, Ho PY, Aranda-Diaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA.},
journal = {Cell},
year = {2022},
doi = {10.1016/j.cell.2022.08.003},
pmid = {36070752}
}
@article{lin238711,
title = {Meta-Analysis and Validation of a Colorectal Cancer Risk Prediction Model Using Deep Sequenced Fecal Metagenomes.},
author = {Obon-Santacana M, Mas-Lloret J, Bars-Cortina D, Criado-Mesas L, Carreras-Torres R, Diez-Villanueva A, Moratalla-Navarro F, Guino E, Ibanez-Sanz G, Rodriguez-Alonso L, Mulet-Margalef N, Mata A, Garcia-Rodriguez A, Duell EJ, Pimenoff VN, Moreno V.},
journal = {Cancers (Basel)},
year = {2022},
doi = {10.3390/cancers14174214},
pmid = {36077748}
}
@article{lin238641,
title = {Time series strain tracking analysis post fecal transplantation identifies individual specific patterns of fecal dominant donor, recipient, and unrelated microbial strains.},
author = {Koo H, Morrow CD.},
journal = {PLoS One},
year = {2022},
doi = {10.1371/journal.pone.0274633},
pmid = {36107983}
}
@article{lin238772,
title = {Drivers and determinants of strain dynamics following fecal microbiota transplantation.},
author = {Schmidt TSB, Li SS, Maistrenko OM, Akanni W, Coelho LP, Dolai S, Fullam A, Glazek AM, Hercog R, Herrema H, Jung F, Kandels S, Orakov A, Thielemann R, von Stetten M, Van Rossum T, Benes V, Borody TJ, de Vos WM, Ponsioen CY, Nieuwdorp M, Bork P.},
journal = {Nat Med},
year = {2022},
doi = {10.1038/s41591-022-01913-0},
pmid = {36109636}
}
@article{lin238667,
title = {Gut dysbiosis and inflammatory blood markers precede HIV with limited changes after early seroconversion.},
author = {Fulcher JA, Li F, Tobin NH, Zabih S, Elliott J, Clark JL, D'Aquila R, Mustanski B, Kipke MD, Shoptaw S, Gorbach PM, Aldrovandi GM.},
journal = {EBioMedicine},
year = {2022},
doi = {10.1016/j.ebiom.2022.104286},
pmid = {36179550}
}
@article{lin238611,
title = {Intestinal Microbiota Influence Doxorubicin Responsiveness in Triple-Negative Breast Cancer.},
author = {Bawaneh A, Wilson AS, Levi N, Howard-McNatt MM, Chiba A, Soto-Pantoja DR, Cook KL.},
journal = {Cancers (Basel)},
year = {2022},
doi = {10.3390/cancers14194849},
pmid = {36230772}
}
@article{lin238672,
title = {Compositional Changes in the Gut Microbiota of Responders and Non-responders to Probiotic Treatment Among Patients With Diarrhea-predominant Irritable Bowel Syndrome: A Post Hoc Analysis of a Randomized Clinical Trial.},
author = {Shin SY, Park S, Moon JM, Kim K, Kim JW, Chun J, Lee TH, Choi CH, Microbiome Research Group of the Korean Society for Neurogastroenterology and Motility.},
journal = {J Neurogastroenterol Motil},
year = {2022},
doi = {10.5056/jnm21202},
pmid = {36250371}
}
@article{lin238732,
title = {A Catalog of over 5,000 Metagenome-Assembled Microbial Genomes from the Caprinae Gut Microbiota.},
author = {Zhang XX, Lv QB, Yan QL, Zhang Y, Guo RC, Meng JX, Ma H, Qin SY, Zhu QH, Li CQ, Liu R, Liu G, Li SH, Sun DB, Ni HB.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.02211-22},
pmid = {36321901}
}
@article{lin238759,
title = {Deficiency of exchange protein directly activated by cAMP (EPAC)-1 in mice augments glucose intolerance, inflammation, and gut dysbiosis associated with Western diet.},
author = {Virwani PD, Cai L, Yeung PKK, Qian G, Chen Y, Zhou L, Wong JWH, Wang Y, Ho JWK, Lau KK, Qian PY, Chung SK.},
journal = {Microbiome},
year = {2022},
doi = {10.1186/s40168-022-01366-0},
pmid = {36329549}
}
@article{lin238627,
title = {Fecal Lcn-2 level is a sensitive biological indicator for gut dysbiosis and intestinal inflammation in multiple sclerosis.},
author = {Yadav SK, Ito N, Mindur JE, Kumar H, Youssef M, Suresh S, Kulkarni R, Rosario Y, Balashov KE, Dhib-Jalbut S, Ito K.},
journal = {Front Immunol},
year = {2022},
doi = {10.3389/fimmu.2022.1015372},
pmid = {36341389}
}
@article{lin238781,
title = {Dynamics of Gut Microbiota and Clinical Variables after Ketogenic and Mediterranean Diets in Drug-Naïve Patients with Type 2 Diabetes Mellitus and Obesity.},
author = {Deledda A, Palmas V, Heidrich V, Fosci M, Lombardo M, Cambarau G, Lai A, Melis M, Loi E, Loviselli A, Manzin A, Velluzzi F.},
journal = {Metabolites},
year = {2022},
doi = {10.3390/metabo12111092},
pmid = {36355175}
}
@article{lin238575,
title = {Luminal and Tumor-Associated Gut Microbiome Features Linked to Precancerous Lesions Malignancy Risk: A Compositional Approach.},
author = {Romanov VA, Karasev IA, Klimenko NS, Koshechkin SI, Tyakht AV, Malikhova OA.},
journal = {Cancers (Basel)},
year = {2022},
doi = {10.3390/cancers14215207},
pmid = {36358626}
}
@article{lin238568,
title = {Functional recovery outcomes following acute stroke is associated with abundance of gut microbiota related to inflammation, butyrate and secondary bile acid.},
author = {Hammond TC, Powell E, Green SJ, Chlipala G, Frank J, Yackzan AT, Yanckello LM, Chang YH, Xing X, Heil S, Springer JE, Pennypacker K, Stromberg A, Sawaki L, Lin AL.},
journal = {Front Rehabil Sci},
year = {2022},
doi = {10.3389/fresc.2022.1017180},
pmid = {36386777}
}
@article{lin238729,
title = {Characterization of the gut microbiome and resistome of Galapagos marine iguanas (Amblyrhynchus cristatus) from uninhabited islands.},
author = {Vasco K, Guevara N, Mosquera J, Zapata S, Zhang L.},
journal = {Anim Microbiome},
year = {2022},
doi = {10.1186/s42523-022-00218-4},
pmid = {36517909}
}
@article{lin238707,
title = {Bacteroides vulgatus attenuates experimental mice colitis through modulating gut microbiota and immune responses.},
author = {Liu L, Xu M, Lan R, Hu D, Li X, Qiao L, Zhang S, Lin X, Yang J, Ren Z, Xu J.},
journal = {Front Immunol},
year = {2022},
doi = {10.3389/fimmu.2022.1036196},
pmid = {36531989}
}
@article{lin238639,
title = {Integrative metagenomic and metabolomic analyses reveal gut microbiota-derived multiple hits connected to development of gestational diabetes mellitus in humans.},
author = {Ye D, Huang J, Wu J, Xie K, Gao X, Yan K, Zhang P, Tao Y, Li Y, Zang S, Rong X, Li J, Guo J.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2022.2154552},
pmid = {36550785}
}
@article{lin238569,
title = {Machine learning framework for gut microbiome biomarkers discovery and modulation analysis in large-scale obese population.},
author = {Liu Y, Zhu J, Wang H, Lu W, Lee YK, Zhao J, Zhang H.},
journal = {BMC Genomics},
year = {2022},
doi = {10.1186/s12864-022-09087-2},
pmid = {36564713}
}
@article{lin238753,
title = {Diagnostic and prognostic potential of the microbiome in ovarian cancer treatment response.},
author = {Asangba AE, Chen J, Goergen KM, Larson MC, Oberg AL, Casarin J, Multinu F, Kaufmann SH, Mariani A, Chia N, Walther-Antonio MRS.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-27555-x},
pmid = {36639731}
}
@article{lin238693,
title = {Microbiome Features Differentiating Unsupervised-Stratification-Based Clusters of Patients with Abnormal Glycometabolism.},
author = {Xu T, Wang X, Chen Y, Li H, Zhao L, Ding X, Zhang C.},
journal = {mBio},
year = {2023},
doi = {10.1128/mbio.03487-22},
pmid = {36651735}
}
@article{lin238698,
title = {Protective Effect of Vegan Microbiota on Liver Steatosis Is Conveyed by Dietary Fiber: Implications for Fecal Microbiota Transfer Therapy.},
author = {Daskova N, Heczkova M, Modos I, Hradecky J, Hudcovic T, Kuzma M, Pelantova H, Buskova I, Sticova E, Funda D, Golias J, Drabonova B, Jarkovska J, Kralova M, Cibulkova I, Gojda J, Cahova M.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15020454},
pmid = {36678325}
}
@article{lin238736,
title = {The Microbiome-Gut-Brain axis regulates social cognition & craving in young binge drinkers.},
author = {Carbia C, Bastiaanssen TFS, Iannone LF, Garcia-Cabrerizo R, Boscaini S, Berding K, Strain CR, Clarke G, Stanton C, Dinan TG, Cryan JF.},
journal = {EBioMedicine},
year = {2023},
doi = {10.1016/j.ebiom.2023.104442},
pmid = {36739238}
}
@article{lin238712,
title = {Breast Cancer Survivors and Healthy Women: Could Gut Microbiota Make a Difference?-"BiotaCancerSurvivors": A Case-Control Study.},
author = {Caleca T, Ribeiro P, Vitorino M, Menezes M, Sampaio-Alves M, Mendes AD, Vicente R, Negreiros I, Faria A, Costa DA.},
journal = {Cancers (Basel)},
year = {2023},
doi = {10.3390/cancers15030594},
pmid = {36765550}
}
@article{lin238602,
title = {Microbial characterization based on multifractal analysis of metagenomes.},
author = {Xie XH, Huang YJ, Han GS, Yu ZG, Ma YL.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1117421},
pmid = {36779183}
}
@article{lin238666,
title = {Lactobacillus plantarum-Derived Postbiotics Ameliorate Acute Alcohol-Induced Liver Injury by Protecting Cells from Oxidative Damage, Improving Lipid Metabolism, and Regulating Intestinal Microbiota.},
author = {Ye W, Chen Z, He Z, Gong H, Zhang J, Sun J, Yuan S, Deng J, Liu Y, Zeng A.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15040845},
pmid = {36839205}
}
@article{lin238727,
title = {The Colorectal Cancer Gut Environment Regulates Activity of the Microbiome and Promotes the Multidrug Resistant Phenotype of ESKAPE and Other Pathogens.},
author = {Lamaudiere MTF, Arasaradnam R, Weedall GD, Morozov IY.},
journal = {mSphere},
year = {2023},
doi = {10.1128/msphere.00626-22},
pmid = {36847529}
}
@article{lin238578,
title = {Fine-scale spatial variation shape fecal microbiome diversity and composition in black-tailed prairie dogs (Cynomys ludovicianus).},
author = {Neha SA, Salazar-Bravo J.},
journal = {BMC Microbiol},
year = {2023},
doi = {10.1186/s12866-023-02778-0},
pmid = {36858951}
}
@article{lin238686,
title = {Case Report: The effect of intravenous and oral antibiotics on the gut microbiome and breath volatile organic compounds over one year.},
author = {Shahi F, Forrester S, Redeker K, Chong JPJ, Barlow G.},
journal = {Wellcome Open Res},
year = {2022},
doi = {10.12688/wellcomeopenres.17450.3},
pmid = {36874581}
}
@article{lin238675,
title = {Gut Microbial Genes and Metabolism for Methionine and Branched-Chain Amino Acids in Diabetic Nephropathy.},
author = {Kim JE, Nam H, Park JI, Cho H, Lee J, Kim HE, Kim DK, Joo KW, Kim YS, Kim BS, Park S, Lee H.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.02344-22},
pmid = {36877076}
}
@article{lin238658,
title = {Amelioration of Colitis by a Gut Bacterial Consortium Producing Anti-Inflammatory Secondary Bile Acids.},
author = {Zhou C, Wang Y, Li C, Xie Z, Dai L.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.03330-22},
pmid = {36943054}
}
@article{lin238745,
title = {Gut Microbiota is Associated with Aging-Related Processes of a Small Mammal Species under High-Density Crowding Stress.},
author = {Xu X, Li G, Zhang D, Zhu H, Liu GH, Zhang Z.},
journal = {Adv Sci (Weinh)},
year = {2023},
doi = {10.1002/advs.202205346},
pmid = {36965140}
}
@article{lin238731,
title = {Omega-3-Supplemented Fat Diet Drives Immune Metabolic Response in Visceral Adipose Tissue by Modulating Gut Microbiota in a Mouse Model of Obesity.},
author = {Portela ND, Galvan C, Sanmarco LM, Bergero G, Aoki MP, Cano RC, Pesoa SA.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15061404},
pmid = {36986134}
}
@article{lin238760,
title = {The Debate between the Human Microbiota and Immune System in Treating Aerodigestive and Digestive Tract Cancers: A Review.},
author = {Domingues C, Cabral C, Jarak I, Veiga F, Dourado M, Figueiras A.},
journal = {Vaccines (Basel)},
year = {2023},
doi = {10.3390/vaccines11030492},
pmid = {36992076}
}
@article{lin238690,
title = {Sex Differences in Association Between Gut Microbiome and Essential Hypertension Based on Ambulatory Blood Pressure Monitoring.},
author = {Virwani PD, Qian G, Hsu MSS, Pijarnvanit TKKTS, Cheung CN, Chow YH, Tang LK, Tse YH, Xian JW, Lam SS, Lee CPI, Lo CCW, Liu RKC, Ho TL, Chow BY, Leung KS, Tsang HW, Lo EKK, Tung KTS, Chung SK, Yuen MF, Leung SY, Ip P, Hung IF, Louie JCY, El-Nezami H, Ho JWK, Lau KK.},
journal = {Hypertension},
year = {2023},
doi = {10.1161/hypertensionaha.122.20752},
pmid = {37073724}
}
@article{lin238774,
title = {Intestinal vitamin D receptor protects against extraintestinal breast cancer tumorigenesis.},
author = {Zhang YG, Xia Y, Zhang J, Deb S, Garrett S, Sun J.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2202593},
pmid = {37074210}
}
@article{lin238728,
title = {Capsulized Fecal Microbiota Transplantation Induces Remission in Patients with Ulcerative Colitis by Gut Microbial Colonization and Metabolite Regulation.},
author = {Chen Q, Fan Y, Zhang B, Yan C, Zhang Q, Ke Y, Chen Z, Wang L, Shi H, Hu Y, Huang Q, Su J, Xie C, Zhang X, Zhou L, Ren J, Xu H.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.04152-22},
pmid = {37093057}
}
@article{lin238704,
title = {Association of distinct microbial signatures with premalignant colorectal adenomas.},
author = {Lee JWJ, Plichta DR, Asher S, Delsignore M, Jeong T, McGoldrick J, Staller K, Khalili H, Xavier RJ, Chung DC.},
journal = {Cell Host Microbe},
year = {2023},
doi = {10.1016/j.chom.2023.04.007},
pmid = {37130517}
}
@article{lin238636,
title = {Metagenomic Shotgun Sequencing Reveals Specific Human Gut Microbiota Associated with Insulin Resistance and Body Fat Distribution in Saudi Women.},
author = {Aljuraiban GS, Alfhili MA, Aldhwayan MM, Aljazairy EA, Al-Musharaf S.},
journal = {Biomolecules},
year = {2023},
doi = {10.3390/biom13040640},
pmid = {37189387}
}
@article{lin238587,
title = {Non-small cell lung cancer patients treated with Anti-PD1 immunotherapy show distinct microbial signatures and metabolic pathways according to progression-free survival and PD-L1 status.},
author = {Dora D, Ligeti B, Kovacs T, Revisnyei P, Galffy G, Dulka E, Krizsan D, Kalcsevszki R, Megyesfalvi Z, Dome B, Weiss GJ, Lohinai Z.},
journal = {Oncoimmunology},
year = {2023},
doi = {10.1080/2162402x.2023.2204746},
pmid = {37197440}
}
@article{lin238558,
title = {Dysbiosis of gut microbiota inhibits NMNAT2 to promote neurobehavioral deficits and oxidative stress response in the 6-OHDA-lesioned rat model of Parkinson's disease.},
author = {Yu J, Meng J, Qin Z, Yu Y, Liang Y, Wang Y, Min D.},
journal = {J Neuroinflammation},
year = {2023},
doi = {10.1186/s12974-023-02782-1},
pmid = {37208728}
}
@article{lin238685,
title = {Differences in Faecal Microbiome Taxonomy, Diversity and Functional Potential in a Bovine Cohort Experimentally Challenged with Mycobacterium avium subsp. paratuberculosis (MAP).},
author = {Matthews C, Walsh AM, Gordon SV, Markey B, Cotter PD, O' Mahony J.},
journal = {Animals (Basel)},
year = {2023},
doi = {10.3390/ani13101652},
pmid = {37238082}
}
@article{lin238706,
title = {Obesity, Gut Microbiota, and Metabolome: From Pathophysiology to Nutritional Interventions.},
author = {Puljiz Z, Kumric M, Vrdoljak J, Martinovic D, Ticinovic Kurir T, Krnic MO, Urlic H, Puljiz Z, Zucko J, Dumanic P, Mikolasevic I, Bozic J.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15102236},
pmid = {37242119}
}
@article{lin238784,
title = {Role of the Gut Microbiota and Its Metabolites in Tumorigenesis or Development of Colorectal Cancer.},
author = {Qu R, Zhang Y, Ma Y, Zhou X, Sun L, Jiang C, Zhang Z, Fu W.},
journal = {Adv Sci (Weinh)},
year = {2023},
doi = {10.1002/advs.202205563},
pmid = {37263983}
}
@article{lin238734,
title = {Maternal PBDE exposure disrupts gut microbiome and promotes hepatic proinflammatory signaling in humanized PXR-transgenic mouse offspring over time.},
author = {Kim S, Li H, Jin Y, Armad J, Gu H, Mani S, Cui JY.},
journal = {Toxicol Sci},
year = {2023},
doi = {10.1093/toxsci/kfad056},
pmid = {37267213}
}
@article{lin238652,
title = {Development of an In Vitro Model of the Gut Microbiota Enriched in Mucus-Adhering Bacteria.},
author = {Calvigioni M, Panattoni A, Biagini F, Donati L, Mazzantini D, Massimino M, Daddi C, Celandroni F, Vozzi G, Ghelardi E.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.00336-23},
pmid = {37289064}
}
@article{lin238507,
title = {SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations.},
author = {Bustion AE, Nayak RR, Agrawal A, Turnbaugh PJ, Pollard KS.},
journal = {Elife},
year = {2023},
doi = {10.7554/elife.82401},
pmid = {37306300}
}
@article{lin238683,
title = {MMINP: A computational framework of microbe-metabolite interactions-based metabolic profiles predictor based on the O2-PLS algorithm.},
author = {Tang W, Zheng H, Xu S, Li P, Zhan L, Luo X, Dai Z, Wang Q, Yu G.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2223349},
pmid = {37306408}
}
@article{lin238579,
title = {Culturing of a complex gut microbial community in mucin-hydrogel carriers reveals strain- and gene-associated spatial organization.},
author = {Jin X, Yu FB, Yan J, Weakley AM, Dubinkina V, Meng X, Pollard KS.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-39121-0},
pmid = {37316519}
}
@article{lin238680,
title = {Gut microbial composition and functionality of school-age Mexican population with metabolic syndrome and type-2 diabetes mellitus using shotgun metagenomic sequencing.},
author = {Carrizales-Sanchez AK, Tamez-Rivera O, Garcia-Gamboa R, Garcia-Cayuela T, Rodriguez-Gutierrez NA, Elizondo-Montemayor L, Garcia-Rivas G, Pacheco A, Hernandez-Brenes C, Senes-Guerrero C.},
journal = {Front Pediatr},
year = {2023},
doi = {10.3389/fped.2023.1193832},
pmid = {37342535}
}
@article{lin238648,
title = {Non-alcoholic fatty liver disease: pathophysiological concepts and treatment options.},
author = {Grander C, Grabherr F, Tilg H.},
journal = {Cardiovasc Res},
year = {2023},
doi = {10.1093/cvr/cvad095},
pmid = {37364164}
}
@article{lin238755,
title = {Gut OncoMicrobiome Signatures (GOMS) as next-generation biomarkers for cancer immunotherapy.},
author = {Thomas AM, Fidelle M, Routy B, Kroemer G, Wargo JA, Segata N, Zitvogel L.},
journal = {Nat Rev Clin Oncol},
year = {2023},
doi = {10.1038/s41571-023-00785-8},
pmid = {37365438}
}
@article{lin238646,
title = {Gut-microbiome Taxonomic Profiling as Non-invasive Biomarkers for the Early Detection of Alcoholic Hepatocellular Carcinoma.},
author = {Seok J, Suk KT.},
journal = {J Liver Cancer},
year = {2020},
doi = {10.17998/jlc.20.1.32},
pmid = {37383053}
}
@article{lin238557,
title = {Selection for environmental variance shifted the gut microbiome composition driving animal resilience.},
author = {Casto-Rebollo C, Argente MJ, Garcia ML, Pena RN, Blasco A, Ibanez-Escriche N.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01580-4},
pmid = {37400907}
}
@article{lin238606,
title = {Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized in vitro community compositions.},
author = {Gnanasekaran T, Sarathi A, Fang Q, Azarm A, Assis Geraldo J, Nigro E, Arumugam M.},
journal = {mSystems},
year = {2023},
doi = {10.1128/msystems.01249-22},
pmid = {37427928}
}
@article{lin238542,
title = {Roxadustat alleviates the inflammatory status in patients receiving maintenance hemodialysis with erythropoiesis-stimulating agent resistance by increasing the short-chain fatty acids producing gut bacteria.},
author = {Zhao XN, Liu SX, Wang ZZ, Zhang S, You LL.},
journal = {Eur J Med Res},
year = {2023},
doi = {10.1186/s40001-023-01179-3},
pmid = {37430374}
}
@article{lin238733,
title = {Oral and anal microbiome from HIV-exposed individuals: role of host-associated factors in taxa composition and metabolic pathways.},
author = {Lacunza E, Fink V, Salas ME, Canzoneri R, Naipauer J, Williams S, Coso O, Sued O, Cahn P, Mesri EA, Abba MC.},
journal = {NPJ Biofilms Microbiomes},
year = {2023},
doi = {10.1038/s41522-023-00413-4},
pmid = {37438354}
}
@article{lin238694,
title = {Metagenomic assessment of gut microbial communities and risk of severe COVID-19.},
author = {Nguyen LH, Okin D, Drew DA, Battista VM, Jesudasen SJ, Kuntz TM, Bhosle A, Thompson KN, Reinicke T, Lo CH, Woo JE, Caraballo A, Berra L, Vieira J, Huang CY, Das Adhikari U, Kim M, Sui HY, Magicheva-Gupta M, McIver L, Goldberg MB, Kwon DS, Huttenhower C, Chan AT, Lai PS.},
journal = {Genome Med},
year = {2023},
doi = {10.1186/s13073-023-01202-6},
pmid = {37438797}
}
@article{lin238723,
title = {A shotgun metagenomic analysis of the fecal microbiome in humans infected with Giardia duodenalis.},
author = {McGregor BA, Razmjou E, Hooshyar H, Seeger DR, Golovko SA, Golovko MY, Singer SM, Hur J, Solaymani-Mohammadi S.},
journal = {Parasit Vectors},
year = {2023},
doi = {10.1186/s13071-023-05821-1},
pmid = {37464386}
}
@article{lin238621,
title = {The crosstalk between microbiota and metabolites in AP mice: an analysis based on metagenomics and untargeted metabolomics.},
author = {Zhou Q, Tao X, Guo F, Zhu Y, Wu Y, Xiang H, Shang D.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1134321},
pmid = {37621874}
}
@article{lin238623,
title = {Predicting Adverse Recanalization Therapy Outcomes in Acute Ischemic Stroke Patients Using Characteristic Gut Microbiota.},
author = {Chou PS, Hung WC, Yang IH, Kuo CM, Wu MN, Lin TC, Fong YO, Juan CH, Lai CL.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11082016},
pmid = {37630576}
}
@article{lin238709,
title = {Multimodal metagenomic analysis reveals microbial single nucleotide variants as superior biomarkers for early detection of colorectal cancer.},
author = {Gao W, Gao X, Zhu L, Gao S, Sun R, Feng Z, Wu D, Liu Z, Zhu R, Jiao N.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2245562},
pmid = {37635357}
}
@article{lin238673,
title = {Multi-omics analysis of fecal samples in colorectal cancer Egyptians patients: a pilot study.},
author = {Khattab RH, Abo-Hammam RH, Salah M, Hanora AM, Shabayek S, Zakeer S.},
journal = {BMC Microbiol},
year = {2023},
doi = {10.1186/s12866-023-02991-x},
pmid = {37644393}
}
@article{lin238768,
title = {Functional immune boosters; the herb or its dead microbiome? Antigenic TLR4 agonist MAMPs found in 65 medicinal roots and algae's.},
author = {Mazzio E, Barnes A, Badisa R, Fierros-Romero G, Williams H, Council S, Soliman KFA.},
journal = {J Funct Foods},
year = {2023},
doi = {10.1016/j.jff.2023.105687},
pmid = {37654434}
}
@article{lin238608,
title = {Gut Microbiota Alterations and Their Functional Differences in Depression According to Enterotypes in Asian Individuals.},
author = {Park S, Li C, Wu X, Zhang T.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms241713329},
pmid = {37686135}
}
@article{lin238659,
title = {Composition and functional profiles of gut microbiota reflect the treatment stage, severity, and etiology of acute pancreatitis.},
author = {Wang Z, Guo M, Li J, Jiang C, Yang S, Zheng S, Li M, Ai X, Xu X, Zhang W, He X, Wang Y, Chen Y.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.00829-23},
pmid = {37698429}
}
@article{lin238689,
title = {Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes.},
author = {Lim JJ, Diener C, Wilson J, Valenzuela JJ, Baliga NS, Gibbons SM.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-41424-1},
pmid = {37709733}
}
@article{lin238701,
title = {Baseline gut microbiota and metabolome predict durable immunogenicity to SARS-CoV-2 vaccines.},
author = {Peng Y, Zhang L, Mok CKP, Ching JYL, Zhao S, Wong MKL, Zhu J, Chen C, Wang S, Yan S, Qin B, Liu Y, Zhang X, Cheung CP, Cheong PK, Ip KL, Fung ACH, Wong KKY, Hui DSC, Chan FKL, Ng SC, Tun HM.},
journal = {Signal Transduct Target Ther},
year = {2023},
doi = {10.1038/s41392-023-01629-8},
pmid = {37743379}
}
@article{lin238702,
title = {Expanded microbiome niches of RAG-deficient patients.},
author = {Blaustein RA, Shen Z, Kashaf SS, Lee-Lin S, Conlan S, NISC Comparative Sequencing Program, Bosticardo M, Delmonte OM, Holmes CJ, Taylor ME, Banania G, Nagao K, Dimitrova D, Kanakry JA, Su H, Holland SM, Bergerson JRE, Freeman AF, Notarangelo LD, Kong HH, Segre JA.},
journal = {Cell Rep Med},
year = {2023},
doi = {10.1016/j.xcrm.2023.101205},
pmid = {37757827}
}
@article{lin238574,
title = {Pharmacological and Nutritional Modulation of Metabolome and Metagenome in Cardiometabolic Disorders.},
author = {Witkowska AM, Salem JE.},
journal = {Biomolecules},
year = {2023},
doi = {10.3390/biom13091340},
pmid = {37759740}
}
@article{lin238640,
title = {Ex Vivo Colonic Fermentation of NUTRIOSE® Exerts Immuno-Modulatory Properties and Strong Anti-Inflammatory Effects.},
author = {Perreau C, Thabuis C, Verstrepen L, Ghyselinck J, Marzorati M.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15194229},
pmid = {37836513}
}
@article{lin238632,
title = {Lipid complexation reduces rice starch digestibility and boosts short-chain fatty acid production via gut microbiota.},
author = {Shen Y, An Z, Huyan Z, Shu X, Wu D, Zhang N, Pellegrini N, Rubert J.},
journal = {NPJ Sci Food},
year = {2023},
doi = {10.1038/s41538-023-00230-1},
pmid = {37853069}
}
@article{lin238615,
title = {Probiotics Bifidobacterium lactis M8 and Lactobacillus rhamnosus M9 prevent high blood pressure via modulating the gut microbiota composition and host metabolic products.},
author = {Zhang Y, Zheng T, Ma D, Shi P, Zhang H, Li J, Sun Z.},
journal = {mSystems},
year = {2023},
doi = {10.1128/msystems.00331-23},
pmid = {37855616}
}
@article{lin238570,
title = {Diagnosis of Crohn's disease and ulcerative colitis using the microbiome.},
author = {Kang DY, Park JL, Yeo MK, Kang SB, Kim JM, Kim JS, Kim SY.},
journal = {BMC Microbiol},
year = {2023},
doi = {10.1186/s12866-023-03084-5},
pmid = {37951857}
}
@article{lin238682,
title = {Gut microbial structural variation associates with immune checkpoint inhibitor response.},
author = {Liu R, Zou Y, Wang WQ, Chen JH, Zhang L, Feng J, Yin JY, Mao XY, Li Q, Luo ZY, Zhang W, Wang DM.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-42997-7},
pmid = {37973916}
}
@article{lin238657,
title = {Does the ketogenic diet improve neurological disorders by influencing gut microbiota? A systematic review.},
author = {Mazandarani M, Lashkarbolouk N, Ejtahed HS, Qorbani M.},
journal = {Nutr J},
year = {2023},
doi = {10.1186/s12937-023-00893-2},
pmid = {37981693}
}
@article{lin238662,
title = {The gut microbiome in bullous pemphigoid: implications of the gut-skin axis for disease susceptibility.},
author = {Liu X, van Beek N, Cepic A, Andreani NA, Chung CJ, Hermes BM, Yilmaz K, Benoit S, Drenovska K, Gerdes S, Glaser R, Goebeler M, Gunther C, von Georg A, Hammers CM, Holtsche MM, Hubner F, Kiritsi D, Schauer F, Linnenmann B, Huilaja L, Tasanen-Maatta K, Vassileva S, Zillikens D, Sadik CD, Schmidt E, Ibrahim S, Baines JF.},
journal = {Front Immunol},
year = {2023},
doi = {10.3389/fimmu.2023.1212551},
pmid = {38022583}
}
@article{lin238610,
title = {Exercise and microbiome: From big data to therapy.},
author = {Meng D, Ai S, Spanos M, Shi X, Li G, Cretoiu D, Zhou Q, Xiao J.},
journal = {Comput Struct Biotechnol J},
year = {2023},
doi = {10.1016/j.csbj.2023.10.034},
pmid = {38022690}
}
@article{lin238613,
title = {The Possible Preventative Role of Lactate- and Butyrate-Producing Bacteria in Colorectal Carcinogenesis.},
author = {Song CH, Kim N, Nam RH, Choi SI, Jang JY, Kim EH, Choi J, Choi Y, Yoon H, Lee SM, Seok YJ.},
journal = {Gut Liver},
year = {2024},
doi = {10.5009/gnl230385},
pmid = {38030382}
}
@article{lin238642,
title = {Metagenomic analysis reveals distinct changes in the gut microbiome of obese Chinese children.},
author = {Li P, Jiang J, Li Y, Lan Y, Yang F, Wang J, Xie Y, Xiong F, Wu J, Liu H, Fan Z.},
journal = {BMC Genomics},
year = {2023},
doi = {10.1186/s12864-023-09805-4},
pmid = {38031016}
}
@article{lin238678,
title = {Poly-omic risk scores predict inflammatory bowel disease diagnosis.},
author = {Arehart CH, Sterrett JD, Garris RL, Quispe-Pilco RE, Gignoux CR, Evans LM, Stanislawski MA.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.00677-23},
pmid = {38095449}
}
@article{lin238550,
title = {Microbiota Diversity in Non-Small Cell Lung Cancer Gut and Mouth Cavity Microbiota Diversity in Non-Small Cell Lung Cancer Patients.},
author = {Brisudova A, Bielnikova-Krystofova H, Motyka O, Fritzova D, Katuchova V, Ponikelska N, Skanderova D, Raclavsky V, Michalek J, Mittak M, Svecova P, Jakubec P, Rozsivalova D, Szkorupa M, Klein J, Skarda J, Kolar Z, Skopelidou V.},
journal = {Pol J Microbiol},
year = {2023},
doi = {10.33073/pjm-2023-044},
pmid = {38103007}
}
@article{lin238705,
title = {Efficacy of Bifidobacterium animalis subsp. lactis BL-99 in the treatment of functional dyspepsia: a randomized placebo-controlled clinical trial.},
author = {Zhang Q, Li G, Zhao W, Wang X, He J, Zhou L, Zhang X, An P, Liu Y, Zhang C, Zhang Y, Liu S, Zhao L, Liu R, Li Y, Jiang W, Wang X, Wang Q, Fang B, Zhao Y, Ren Y, Niu X, Li D, Shi S, Hung WL, Wang R, Liu X, Ren F.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-023-44292-x},
pmid = {38172093}
}
@article{lin238504,
title = {Polysaccharide utilization loci from Bacteroidota encode CE15 enzymes with possible roles in cleaving pectin-lignin bonds.},
author = {Seveso A, Mazurkewich S, Banerjee S, Poulsen J-CN, Lo Leggio L, Larsbrink J.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.01768-23},
pmid = {38179933}
}
@article{lin238580,
title = {Plant-based diets and the gut microbiome: findings from the Baltimore Longitudinal Study of Aging.},
author = {Shen X, Tilves C, Kim H, Tanaka T, Spira AP, Chia CW, Talegawkar SA, Ferrucci L, Mueller NT.},
journal = {Am J Clin Nutr},
year = {2024},
doi = {10.1016/j.ajcnut.2024.01.006},
pmid = {38218318}
}
@article{lin238626,
title = {An Analysis of the Gut Microbiota and Related Metabolites following PCSK9 Inhibition in Statin-Treated Patients with Elevated Levels of Lipoprotein(a).},
author = {Caparros-Martin JA, Maher P, Ward NC, Saladie M, Agudelo-Romero P, Stick SM, Chan DC, Watts GF, O'Gara F.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12010170},
pmid = {38257996}
}
@article{lin238605,
title = {Meta-analysis reveals obesity associated gut microbial alteration patterns and reproducible contributors of functional shift.},
author = {Chanda D, De D.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2304900},
pmid = {38265338}
}
@article{lin238687,
title = {The pediatric gut bacteriome and virome in response to SARS-CoV-2 infection.},
author = {Piazzesi A, Pane S, Del Chierico F, Romani L, Campana A, Palma P, Putignani L.},
journal = {Front Cell Infect Microbiol},
year = {2024},
doi = {10.3389/fcimb.2024.1335450},
pmid = {38318164}
}
@article{lin238696,
title = {Dynamics of bacterial recombination in the human gut microbiome.},
author = {Liu Z, Good BH.},
journal = {PLoS Biol},
year = {2024},
doi = {10.1371/journal.pbio.3002472},
pmid = {38329938}
}
@article{lin238827,
title = {Microbiota-gut-brain axis and its therapeutic applications in neurodegenerative diseases.},
author = {Loh JS, Mak WQ, Tan LKS, Ng CX, Chan HH, Yeow SH, Foo JB, Ong YS, How CW, Khaw KY.},
journal = {Signal Transduct Target Ther},
year = {2024},
doi = {10.1038/s41392-024-01743-1},
pmid = {38360862}
}
@article{lin238684,
title = {The gut microbiome regulates the clinical efficacy of sulfasalazine therapy for IBD-associated spondyloarthritis.},
author = {Lima SF, Pires S, Rupert A, Oguntunmibi S, Jin WB, Marderstein A, Funez-dePagnier G, Maldarelli G, Viladomiu M, Putzel G, Yang W, Tran N, Xiang G, Grier A, Guo CJ, Lukin D, Mandl LA, Scherl EJ, Longman RS.},
journal = {Cell Rep Med},
year = {2024},
doi = {10.1016/j.xcrm.2024.101431},
pmid = {38378002}
}
@article{lin238651,
title = {Differences in gut microbiota between Dutch and South-Asian Surinamese: potential implications for type 2 diabetes mellitus.},
author = {Nayman EI, Schwartz BA, Polmann M, Gumabong AC, Nieuwdorp M, Cickovski T, Mathee K.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-54769-4},
pmid = {38403716}
}
@article{lin238643,
title = {Yeast mannan rich fraction positively influences microbiome uniformity, productivity associated taxa, and lay performance.},
author = {Leigh RJ, Corrigan A, Murphy RA, Taylor-Pickard J, Moran CA, Walsh F.},
journal = {Anim Microbiome},
year = {2024},
doi = {10.1186/s42523-024-00295-7},
pmid = {38438939}
}
@article{lin238551,
title = {Deep metagenomic characterization of the gut virome in pregnant women with preeclampsia.},
author = {Lv L-J, Wen J-Y, Zhang Y, Guo R-C, Li H, Yi Z-T, He T-W, Chen M-C, Chen Y, Wu X-Y, Li S-h, Kang J, Hou Y-P, Yan Q-l, Yin A-H.},
journal = {mSphere},
year = {2024},
doi = {10.1128/msphere.00676-23},
pmid = {38506520}
}
@article{lin238635,
title = {Integrated analysis of gut metabolome, microbiome, and brain function reveal the role of gut-brain axis in longevity.},
author = {Jiao B, Ouyang Z, Liu Q, Xu T, Wan M, Ma G, Zhou L, Guo J, Wang J, Tang B, Zhao Z, Shen L.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2331434},
pmid = {38548676}
}
@article{lin238594,
title = {Integrative metagenomic analysis reveals distinct gut microbial signatures related to obesity.},
author = {Hu X, Yu C, He Y, Zhu S, Wang S, Xu Z, You S, Jiao Y, Liu SL, Bao H.},
journal = {BMC Microbiol},
year = {2024},
doi = {10.1186/s12866-024-03278-5},
pmid = {38580930}
}
@article{lin238534,
title = {Virological response to nucleos(t)ide analogues treatment in chronic hepatitis B patients is associated with Bacteroides-dominant gut microbiome.},
author = {Zhang S, Chau HT, Tun HM, Huang FY, Wong DK, Mak LY, Yuen MF, Seto WK.},
journal = {EBioMedicine},
year = {2024},
doi = {10.1016/j.ebiom.2024.105101},
pmid = {38583259}
}
@article{lin238567,
title = {Dynamic Changes of the Gut Microbiota and Its Functional Metagenomic Potential during the Development of Non-Small Cell Lung Cancer.},
author = {Feng C, Li N, Gao G, He Q, Kwok LY, Zhang H.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25073768},
pmid = {38612577}
}
@article{lin238549,
title = {Recipient microbiome-related features predicting metabolic improvement following fecal microbiota transplantation in adults with severe obesity and metabolic syndrome: a secondary analysis of a phase 2 clinical trial.},
author = {Zhang Z, Mocanu V, Deehan EC, Hotte N, Zhu Y, Wei S, Kao DH, Karmali S, Birch DW, Walter J, Madsen KL.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2345134},
pmid = {38685731}
}
@article{lin238622,
title = {The regulation of intestinal flora on host's genes may play an essential role in the development of endometrial hyperplastic processes in yang deficiency individuals.},
author = {Zhang HX, Zhao XL, Wu HX, Luo ZQ, Wang LM, Lv SR, Huang XR, Dong N, Li DZ, Bao C, Su LD, Liu YX, Hu HQ, Bu ZX, Zhang HR, Liu Y, Chang SJ, He ZY, Sai L, Wang HW, Guo HM, Huang XH, Cao X.},
journal = {Int J Clin Exp Pathol},
year = {2024},
doi = {10.62347/hbkg3920},
pmid = {38716350}
}
@article{lin238520,
title = {Fiber from elicited butternut pumpkin (Cucurbita moschata D. cv. Ariel) modulates the human intestinal microbiota dysbiosis.},
author = {Nieto JA, Roses C, Garcia-Ibanez P, Perez B, Viadel B, Romo-Hualde A, Milagro FI, Barcelo A, Carvajal M, Gallego E, Agudelo A.},
journal = {Int J Biol Macromol},
year = {2024},
doi = {10.1016/j.ijbiomac.2024.132130},
pmid = {38723828}
}
@article{lin238631,
title = {Gut Microbiota Profile Changes in Patients with Inflammatory Bowel Disease and Non-Alcoholic Fatty Liver Disease: A Metagenomic Study.},
author = {De Caro C, Spagnuolo R, Quirino A, Mazza E, Carrabetta F, Maurotti S, Cosco C, Bennardo F, Roberti R, Russo E, Giudice A, Giudice A, Pujia A, Doldo P, Matera G, Marascio N.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25105453},
pmid = {38791490}
}
@article{lin238633,
title = {The gut microbiota in persistent post-operative pain following breast cancer surgery.},
author = {Masaud K, Collins JM, Rubio RC, Corrigan M, Cotter PD, O'Brien N, Bluett R, Jimenez CK, O'Mahony SM, Shorten GD.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-62397-1},
pmid = {38811609}
}
@article{lin238788,
title = {Diet quality and anxiety: a critical overview with focus on the gut microbiome.},
author = {Basso M, Zorzan I, Johnstone N, Barberis M, Cohen Kadosh K.},
journal = {Front Nutr},
year = {2024},
doi = {10.3389/fnut.2024.1346483},
pmid = {38812941}
}
@article{lin238540,
title = {Insights into Intrinsic Atopic Dermatitis: immunogenicity, Dysbiosis, and Imaging (Reflectance Confocal Microscopy, Optical Coherence Tomography).},
author = {Gavrilita E, Silion SI, Bitca ML, Tatu AL.},
journal = {Clin Cosmet Investig Dermatol},
year = {2024},
doi = {10.2147/ccid.s459096},
pmid = {38881699}
}
@article{lin238600,
title = {Deciphering unique and shared interactions between the human gut microbiota and oral antidiabetic drugs.},
author = {Ren H, Shi Z, Yang F, Wang S, Yuan F, Li T, Li M, Zhu J, Li J, Wu K, Zhang Y, Ning G, Kristiansen K, Wang W, Gu Y, Zhong H.},
journal = {Imeta},
year = {2024},
doi = {10.1002/imt2.179},
pmid = {38882498}
}
@article{lin238647,
title = {Specific microbiome patterns and their association with breast cancer: the intestinal microbiota as a potential biomarker and therapeutic strategy.},
author = {Amaro-da-Cruz A, Rubio-Tomas T, Alvarez-Mercado AI.},
journal = {Clin Transl Oncol},
year = {2025},
doi = {10.1007/s12094-024-03554-w},
pmid = {38890244}
}
@article{lin238571,
title = {Alterations in microbiome associated with acute pancreatitis.},
author = {Yazici C, Priyadarshini M, Boulay B, Dai Y, Layden BT.},
journal = {Curr Opin Gastroenterol},
year = {2024},
doi = {10.1097/mog.0000000000001046},
pmid = {38900442}
}
@article{lin238660,
title = {Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages.},
author = {Shridhar SV, Beghini F, Alexander M, Singh A, Juarez RM, Brito IL, Christakis NA.},
journal = {Cell Rep},
year = {2024},
doi = {10.1016/j.celrep.2024.114442},
pmid = {38968070}
}
@article{lin238556,
title = {Fecal Microbial Dysbiosis Is Associated with Colorectal Cancer Risk in a Korean Population.},
author = {Kim J, Gunathilake M, Yeo HY, Oh JH, Kim BC, Han N, Kim B, Pyun H, Lim MY, Nam YD, Chang HJ.},
journal = {Cancer Res Treat},
year = {2025},
doi = {10.4143/crt.2024.382},
pmid = {39054623}
}
@article{lin238645,
title = {Microbial and Metabolic Gut Profiling across Seven Malignancies Identifies Fecal Faecalibacillus intestinalis and Formic Acid as Commonly Altered in Cancer Patients.},
author = {Kulecka M, Czarnowski P, Balabas A, Turkot M, Kruczkowska-Tarantowicz K, Zeber-Lubecka N, Dabrowska M, Paszkiewicz-Kozik E, Walewski J, Lugowska I, Kosela-Paterczyk H, Rutkowski P, Kluska A, Piatkowska M, Jagiello-Gruszfeld A, Tenderenda M, Gawinski C, Wyrwicz L, Borucka M, Krzakowski M, Zajac L, Kaminski M, Mikula M, Ostrowski J.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25158026},
pmid = {39125593}
}
@article{lin238710,
title = {Major depletion of insulin sensitivity-associated taxa in the gut microbiome of persons living with HIV controlled by antiretroviral drugs.},
author = {Belda E, Capeau J, Zucker JD, Chatelier EL, Pons N, Onate FP, Quinquis B, Alili R, Fellahi S, Katlama C, Clement K, Feve B, Jaureguiberry S, Goujard C, Lambotte O, Dore J, Prifti E, Bastard JP.},
journal = {BMC Med Genomics},
year = {2024},
doi = {10.1186/s12920-024-01978-5},
pmid = {39138568}
}
@article{lin238697,
title = {Crosstalk between gut microbiota and host immune system and its response to traumatic injury.},
author = {Ullah H, Arbab S, Tian Y, Chen Y, Liu CQ, Li Q, Li K.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1413485},
pmid = {39144142}
}
@article{lin238619,
title = {The involvement of oral bacteria in inflammatory bowel disease.},
author = {Xiang B, Hu J, Zhang M, Zhi M.},
journal = {Gastroenterol Rep (Oxf)},
year = {2024},
doi = {10.1093/gastro/goae076},
pmid = {39188957}
}
@article{lin238676,
title = {Consistent signatures in the human gut microbiome of longevous populations.},
author = {Chen S, Zhang Z, Liu S, Chen T, Lu Z, Zhao W, Mou X, Liu S.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2393756},
pmid = {39197040}
}
@article{lin238699,
title = {Inflammaging: The Next Challenge-Exploring the Role of Gut Microbiota, Environmental Factors, and Sex Differences.},
author = {Caldarelli M, Rio P, Marrone A, Giambra V, Gasbarrini A, Gambassi G, Cianci R.},
journal = {Biomedicines},
year = {2024},
doi = {10.3390/biomedicines12081716},
pmid = {39200181}
}
@article{lin238592,
title = {Integrated Microbiome and Metabolome Analysis Reveals Hypothalamic-Comorbidities Related Signatures in Craniopharyngioma.},
author = {Lin B, Ye Z, Cao Z, Ye Z, Yu Y, Jiang W, Guo S, Melnikov V, Zhou P, Ji C, Shi C, Wu Z, Chen Z, Xu Y, Zhang Q, Ma Z, Qiao N, Chen L, Shou X, Cao X, Zhou X, Zhang L, He M, Wang Y, Ye H, Li Y, Zhang Z, Wang M, Gao R, Zhang Y.},
journal = {Adv Sci (Weinh)},
year = {2024},
doi = {10.1002/advs.202400684},
pmid = {39225628}
}
@article{lin238517,
title = {Effect of dark sweet cherry (Prunus avium) supplementation on the fecal microbiota, metabolic endotoxemia, and intestinal permeability in obese subjects: a single-blind randomized trial.},
author = {Arbizu S, Mertens-Talcott SU, Talcott S, Noratto GD.},
journal = {Food Funct},
year = {2024},
doi = {10.1039/d4fo01650e},
pmid = {39228354}
}
@article{lin238563,
title = {Gut metagenomes of Asian octogenarians reveal metabolic potential expansion and distinct microbial species associated with aging phenotypes.},
author = {Ravikrishnan A, Wijaya I, Png E, Chng KR, Ho EXP, Ng AHQ, Mohamed Naim AN, Gounot JS, Guan SP, Hanqing JL, Guan L, Li C, Koh JY, de Sessions PF, Koh WP, Feng L, Ng TP, Larbi A, Maier AB, Kennedy BK, Nagarajan N.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-52097-9},
pmid = {39237540}
}
@article{lin238529,
title = {Multi-omics study unravels gut microbiota and metabolites alteration in patients with Wilson's disease.},
author = {Cai X, Dai J, Xie Y, Xu S, Liu M.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-71740-5},
pmid = {39251728}
}
@article{lin238553,
title = {Exploring the gut microbiome and immunological landscape in kidney cancer: a Mendelian randomization analysis.},
author = {Lv S, Guo Q, He Y, Yu Z, Zhan X, Li H, Pan Y.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1459967},
pmid = {39267764}
}
@article{lin238713,
title = {The DAV132 colon-targeted adsorbent does not interfere with plasma concentrations of antibiotics but prevents antibiotic-related dysbiosis: a randomized phase I trial in healthy volunteers.},
author = {Messaoudene M, Ferreira S, Saint-Lu N, Ponce M, Truntzer C, Boidot R, Le Bescop C, Loppinet T, Corbel T, Feger C, Bertrand K, Elkrief A, Isaksen M, Vitry F, Sablier-Gallis F, Andremont A, Bod L, Ghiringhelli F, de Gunzburg J, Routy B.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-52373-8},
pmid = {39278946}
}
@article{lin238655,
title = {The effects of fermented vegetables on the gut microbiota for prevention of cardiovascular disease.},
author = {Baron M, Zuo B, Chai J, Zhao J, Jahan-Mihan A, Ochrietor J, Arikawa AY.},
journal = {Gut Microbiome (Camb)},
year = {2024},
doi = {10.1017/gmb.2024.4},
pmid = {39290661}
}
@article{lin238609,
title = {Comprehensive analyses of a large human gut Bacteroidales culture collection reveal species- and strain-level diversity and evolution.},
author = {Zhang ZJ, Cole CG, Coyne MJ, Lin H, Dylla N, Smith RC, Pappas TE, Townson SA, Laliwala N, Waligurski E, Ramaswamy R, Woodson C, Burgo V, Little JC, Moran D, Rose A, McMillin M, McSpadden E, Sundararajan A, Sidebottom AM, Pamer EG, Comstock LE.},
journal = {Cell Host Microbe},
year = {2024},
doi = {10.1016/j.chom.2024.08.016},
pmid = {39293438}
}
@article{lin238669,
title = {Microbiome- and Host Inflammasome-Targeting Inhibitor Nanoligomers Are Therapeutic in the Murine Colitis Model.},
author = {Sharma S, Gilberto VS, Levens CL, Chatterjee A, Kuhn KA, Nagpal P.},
journal = {ACS Pharmacol Transl Sci},
year = {2024},
doi = {10.1021/acsptsci.4c00102},
pmid = {39296260}
}
@article{lin238650,
title = {Visceral adiposity in postmenopausal women is associated with a pro-inflammatory gut microbiome and immunogenic metabolic endotoxemia.},
author = {Gaber M, Wilson AS, Millen AE, Hovey KM, LaMonte MJ, Wactawski-Wende J, Ochs-Balcom HM, Cook KL.},
journal = {Microbiome},
year = {2024},
doi = {10.1186/s40168-024-01901-1},
pmid = {39367431}
}
@article{lin238590,
title = {Physical Therapy for Knee Pain Relief Induces Changes in Gut Microbiome Composition: A Secondary Analysis of Data From a Randomized Controlled Trial.},
author = {Kouraki A, Vijay A, Gohir S, Millar B, Kelly A, Valdes AM.},
journal = {Sports Health},
year = {2025},
doi = {10.1177/19417381241283812},
pmid = {39370648}
}
@article{lin238664,
title = {Gut Microbiota Disruption in Hematologic Cancer Therapy: Molecular Insights and Implications for Treatment Efficacy.},
author = {Guevara-Ramirez P, Cadena-Ullauri S, Paz-Cruz E, Ruiz-Pozo VA, Tamayo-Trujillo R, Cabrera-Andrade A, Zambrano AK.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms251910255},
pmid = {39408584}
}
@article{lin238541,
title = {Gut microbiome metabolites, molecular mimicry, and species-level variation drive long-term efficacy and adverse event outcomes in lung cancer survivors.},
author = {Liu X, Lu B, Tang H, Jia X, Zhou Q, Zeng Y, Gao X, Chen M, Xu Y, Wang M, Tan B, Li J.},
journal = {EBioMedicine},
year = {2024},
doi = {10.1016/j.ebiom.2024.105427},
pmid = {39471749}
}
@article{lin238607,
title = {alpha-synuclein overexpression and the microbiome shape the gut and brain metabolome in mice.},
author = {Morais LH, Boktor JC, MahmoudianDehkordi S, Kaddurah-Daouk R, Mazmanian SK.},
journal = {NPJ Parkinsons Dis},
year = {2024},
doi = {10.1038/s41531-024-00816-w},
pmid = {39477976}
}
@article{lin238524,
title = {Association between seizure reduction during ketogenic diet treatment of epilepsy and changes in circulatory metabolites and gut microbiota composition.},
author = {Dahlin M, Wheelock CE, Prast-Nielsen S.},
journal = {EBioMedicine},
year = {2024},
doi = {10.1016/j.ebiom.2024.105400},
pmid = {39500011}
}
@article{lin238522,
title = {Palmitoleic Acid Inhibits Hepatotoxic Effects by Reducing Trimethylamine-N-Oxide (TMAO) Formation in High L-Carnitine-Treated Mice.},
author = {Han Q, Liu Y, Liu X, Geng Y, Wu Q, Xiao H.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16213599},
pmid = {39519432}
}
@article{lin238630,
title = {Metagenome-based characterization of the gut bacteriome, mycobiome, and virome in patients with chronic hepatitis B-related liver fibrosis.},
author = {Chen W, Liang F, Zhang Y, Zhang Y, Lv J, Jin X, Ran Y, Li S, Sun W.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1449090},
pmid = {39526142}
}
@article{lin238528,
title = {Mendelian randomization analyses support causal relationships between gut microbiome and longevity.},
author = {Chen S, Chen W, Wang X, Liu S.},
journal = {J Transl Med},
year = {2024},
doi = {10.1186/s12967-024-05823-2},
pmid = {39548551}
}
@article{lin238564,
title = {Sturgeon-derived peptide LLLE alleviates colitis via regulating gut microbiota and its metabolites.},
author = {Lin J, Yang J, Cui L, Nagpal R, Singh P, Salazar G, Rao Q, Peng Y, Sun Q.},
journal = {Curr Res Food Sci},
year = {2024},
doi = {10.1016/j.crfs.2024.100898},
pmid = {39569007}
}
@article{lin238548,
title = {A novel computational approach for the mining of signature pathways using species co-occurrence networks in gut microbiomes.},
author = {Kim S, Thapa I, Ali H.},
journal = {BMC Microbiol},
year = {2024},
doi = {10.1186/s12866-024-03633-6},
pmid = {39574009}
}
@article{lin238565,
title = {Gut microbiota dysbiosis induced by alcohol exposure in pubertal and adult mice.},
author = {Yang J, Wang H, Lin X, Liu J, Feng Y, Bai Y, Liang H, Hu T, Wu Z, Lai J, Liu J, Zou Y, Wei S, Yan P.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.01366-24},
pmid = {39601556}
}
@article{lin238559,
title = {Exploring the Characteristics of Gut Microbiota Associated with Depression via the Depression Assessment Scales.},
author = {Won S, Kim EJ, Park SE, Lee MH, Pak J, Kim K, Son HS, Kim JH, Kwak S.},
journal = {J Microbiol Biotechnol},
year = {2024},
doi = {10.4014/jmb.2408.08042},
pmid = {39617715}
}
@article{lin238616,
title = {Age-stratification reveals age-specific intestinal microbiota signatures in juvenile idiopathic arthritis.},
author = {Budzinski L, Sempert T, Lietz L, Maier R, Kang GU, von Stuckrad ASL, Goetzke CC, Roth M, Shah A, Abbas A, Lehman K, Necke K, Bartsch S, Hoffmann U, Mashreghi MF, Biesen R, Kallinich T, Chang HD.},
journal = {Mol Cell Pediatr},
year = {2024},
doi = {10.1186/s40348-024-00186-6},
pmid = {39653980}
}
@article{lin238620,
title = {Integrative multiomics analysis reveals association of gut microbiota and its metabolites with susceptibility to keloids.},
author = {Li D, Li M, Gao H, Hu K, Xie R, Fan J, Huang M, Liao C, Han C, Guo Z, Chen X, Li M.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1475984},
pmid = {39669776}
}
@article{lin238721,
title = {Impact of cigarette smoking on gut microbial dysbiosis: a structured literature review.},
author = {Imade EE, Obayagbona NO.},
journal = {Gut Microbiome (Camb)},
year = {2024},
doi = {10.1017/gmb.2024.3},
pmid = {39703543}
}
@article{lin238656,
title = {Diet-Gut Microbiota Relations: Critical Appraisal of Evidence From Studies Using Metagenomics.},
author = {Lotankar M, Houttu N, Mokkala K, Laitinen K.},
journal = {Nutr Rev},
year = {2025},
doi = {10.1093/nutrit/nuae192},
pmid = {39718602}
}
@article{lin238597,
title = {Dysregulation of saliva and fecal microbiota as novel biomarkers of colorectal cancer.},
author = {Rong J, Chen X, Li Z, Li B, Sun Y, Miao Y.},
journal = {Front Oncol},
year = {2024},
doi = {10.3389/fonc.2024.1498328},
pmid = {39743994}
}
@article{lin238545,
title = {Evaluation of the Safety and Impact of Heat-Treated Lactiplantibacillus plantarum KM2 Fermentation on Gut Microbiome Architecture.},
author = {Won S, Jeong Y, Kim JE, Kim JH, Song HS, Bae HH, Kwak MS, Kim DK, Sung MH, Kwak S.},
journal = {J Microbiol Biotechnol},
year = {2024},
doi = {10.4014/jmb.2411.11069},
pmid = {39757420}
}
@article{lin238593,
title = {Polyphenols and Microbiota Modulation: Insights from Swine and Other Animal Models for Human Therapeutic Strategies.},
author = {Anghel AC, Taranu I, Ortan A, Marcu Spinu S, Dragoi Cudalbeanu M, Rosu PM, Babeanu NE.},
journal = {Molecules},
year = {2024},
doi = {10.3390/molecules29246026},
pmid = {39770115}
}
@article{lin238629,
title = {Inference of the Demographic Histories and Selective Effects of Human Gut Commensal Microbiota Over the Course of Human History.},
author = {Mah JC, Lohmueller KE, Garud NR.},
journal = {Mol Biol Evol},
year = {2025},
doi = {10.1093/molbev/msaf010},
pmid = {39838923}
}
@article{lin238503,
title = {RELMbeta sets the threshold for microbiome-dependent oral tolerance.},
author = {Stephen-Victor E, Kuziel GA, Martinez-Blanco M, Jugder BE, Benamar M, Wang Z, Chen Q, Lozano GL, Abdel-Gadir A, Cui Y, Fong J, Saint-Denis E, Chang I, Nadeau KC, Phipatanakul W, Zhang A, Farraj FA, Holder-Niles F, Zeve D, Breault DT, Schmitz-Abe K, Rachid R, Crestani E, Rakoff-Nahoum S, Chatila TA.},
journal = {Nature},
year = {2025},
doi = {10.1038/s41586-024-08440-7},
pmid = {39843735}
}
@article{lin238588,
title = {Impact of Ketogenic and Mediterranean Diets on Gut Microbiota Profile and Clinical Outcomes in Drug-Naïve Patients with Diabesity: A 12-Month Pilot Study.},
author = {Palmas V, Deledda A, Heidrich V, Sanna G, Cambarau G, Fosci M, Puglia L, Cappai EA, Lai A, Loviselli A, Manzin A, Velluzzi F.},
journal = {Metabolites},
year = {2025},
doi = {10.3390/metabo15010022},
pmid = {39852366}
}
@article{lin238576,
title = {Associations Between the Gut Microbiome, Inflammation, and Cardiovascular Profiles in People With Human Immunodeficiency Virus.},
author = {MacCann R, Li J, Leon AAG, Negi R, Alalwan D, Tinago W, McGettrick P, Cotter AG, Landay A, Sabin C, O'Toole PW, Mallon PWG, Understanding the Pathology of Comorbid Disease in HIV-Infected Individuals (HIV UPBEAT) Study Group
.},
journal = {J Infect Dis},
year = {2025},
doi = {10.1093/infdis/jiaf043},
pmid = {39854172}
}
@article{lin238724,
title = {Gut Microbiota Secondary Metabolites: Key Roles in GI Tract Cancers and Infectious Diseases.},
author = {Anwer EKE, Ajagbe M, Sherif M, Musaibah AS, Mahmoud S, ElBanbi A, Abdelnaser A.},
journal = {Biomedicines},
year = {2025},
doi = {10.3390/biomedicines13010100},
pmid = {39857684}
}
@article{lin238628,
title = {Population-level gut microbiome and its associations with environmental factors and metabolic disorders in Southwest China.},
author = {Qu Q, Dou Q, Xiang Z, Yu B, Chen L, Fan Z, Zhao X, Yang S, Zeng P.},
journal = {NPJ Biofilms Microbiomes},
year = {2025},
doi = {10.1038/s41522-025-00661-6},
pmid = {39905038}
}
@article{lin238681,
title = {Early life gut microbiome and its impact on childhood health and chronic conditions.},
author = {Nunez H, Nieto PA, Mars RA, Ghavami M, Sew Hoy C, Sukhum K.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2463567},
pmid = {39916516}
}
@article{lin238518,
title = {Gut commensal Alistipes shahii improves experimental colitis in mice with reduced intestinal epithelial damage and cytokine secretion.},
author = {Lin X, Xu M, Lan R, Hu D, Zhang S, Zhang S, Lu Y, Sun H, Yang J, Liu L, Xu J.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.01607-24},
pmid = {39936902}
}
@article{lin238566,
title = {Gut microbial predictors of first-line immunotherapy efficacy in advanced NSCLC patients.},
author = {Grenda A, Iwan E, Kuznar-Kaminska B, Bomba A, Bielinska K, Krawczyk P, Chmielewska I, Frak M, Szczyrek M, Rolska-Kopinska A, Jankowski T, Kieszko R, Milanowski J.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-89406-1},
pmid = {39979394}
}
@article{lin238810,
title = {Therapeutic Strategies to Modulate Gut Microbial Health: Approaches for Chronic Metabolic Disorder Management.},
author = {Rondanelli M, Borromeo S, Cavioni A, Gasparri C, Gattone I, Genovese E, Lazzarotti A, Minonne L, Moroni A, Patelli Z, Razza C, Sivieri C, Valentini EM, Barrile GC.},
journal = {Metabolites},
year = {2025},
doi = {10.3390/metabo15020127},
pmid = {39997751}
}
@article{lin238521,
title = {MicrobiomeStatPlots: Microbiome statistics plotting gallery for meta-omics and bioinformatics.},
author = {Bai D, Ma C, Xun J, Luo H, Yang H, Lyu H, Zhu Z, Gai A, Yousuf S, Peng K, Xu S, Gao Y, Wang Y, Liu YX.},
journal = {Imeta},
year = {2025},
doi = {10.1002/imt2.70002},
pmid = {40027478}
}
@article{lin238644,
title = {Gut dysbiosis conveys psychological stress to activate LRP5/beta-catenin pathway promoting cancer stemness.},
author = {Cui B, Luo H, He B, Liu X, Lv D, Zhang X, Su K, Zheng S, Lu J, Wang C, Yang Y, Zhao Z, Liu X, Wang X, Zhao Y, Nie X, Jiang Y, Zhang Z, Liu C, Chen X, Cai A, Lv Z, Liu Z, An F, Zhang Y, Yan Q, Kelley KW, Xu G, Xu L, Liu Q, Peng F.},
journal = {Signal Transduct Target Ther},
year = {2025},
doi = {10.1038/s41392-025-02159-1},
pmid = {40038255}
}
@article{lin238581,
title = {Altered gut microbiota and metabolite profiles in community-acquired pneumonia: a metagenomic and metabolomic study.},
author = {Zhang F, Luan J, Suo L, Wang H, Zhao Y, Sun T, Ni Y, Cao H, Zou X, Liu B.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.02639-24},
pmid = {40062854}
}
@article{lin238562,
title = {Network analyses unraveled the complex interactions in the rumen microbiota associated with methane emission in dairy cattle.},
author = {Ye X, Sahana G, Lund MS, Li B, Cai Z.},
journal = {Anim Microbiome},
year = {2025},
doi = {10.1186/s42523-025-00386-z},
pmid = {40069804}
}
@article{lin238617,
title = {Treatment-Related Mechanisms of Tibetan Medicine Terminalia chebula (TC) Aqueous Extract Against Mouse Gastroenteritis Caused by Yak-Origin Salmonella Determined Using Intestinal Microbiome Analysis and Metabolomics.},
author = {Li D, Zhang K, Xue X, Bai Z, Yang, Qi J, Suolang S.},
journal = {Animals (Basel)},
year = {2025},
doi = {10.3390/ani15050755},
pmid = {40076040}
}
@article{lin238584,
title = {Assessing the Role of Dark Sweet Cherry (Prunus avium L.) Consumption on Cognitive Function, Neuropeptides, and Circadian Rhythm in Obesity: Results from a Randomized Controlled Trial.},
author = {Arbizu S, Mertens-Talcott SU, Talcott S, Riviere A, Riechman SE, Noratto GD.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17050784},
pmid = {40077655}
}
@article{lin238583,
title = {Distinct exercise modalities on GUT microbiome in sarcopenic older adults: study protocol of a pilot randomized controlled trial.},
author = {Merelim AS, Zacca R, Moreira-Goncalves D, Costa PP, Baptista LC.},
journal = {Front Med (Lausanne)},
year = {2025},
doi = {10.3389/fmed.2025.1504786},
pmid = {40109720}
}
@article{lin238649,
title = {The gut microbiota and diabetic nephropathy: an observational study review and bidirectional Mendelian randomization study.},
author = {Han YZ, Wang YZY, Zhu XY, Du BX, Wang YX, Zhang XQ, Jia JM, Liu WJ, Zheng HJ.},
journal = {Trials},
year = {2025},
doi = {10.1186/s13063-025-08755-4},
pmid = {40122887}
}
@article{lin238526,
title = {Comparative Analysis of Microbiological Profiles and Antibiotic Resistance Genes in Subjects with Colorectal Cancer and Healthy Individuals.},
author = {Li J, Zhu Y, Chang Q, Gong Y, Wan J, Xu S.},
journal = {Pol J Microbiol},
year = {2025},
doi = {10.33073/pjm-2025-006},
pmid = {40146796}
}
@article{lin238505,
title = {Lactobacillus acidophilus potentiates oncolytic virotherapy through modulating gut microbiota homeostasis in hepatocellular carcinoma.},
author = {Zhang J, Yang J, Luo J, Wu W, Luo H, Wei W, Lyu H, Wang Y, Yi H, Zhang Y, Fan Z, Lyu H, Kanakaveti VP, Qin B, Yuan P, Yang R, Zhang H, Zuo T, Felsher DW, Lee MH, Li K.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-58407-z},
pmid = {40195307}
}
@article{lin238514,
title = {Microbiota-shaped neutrophil senescence regulates sexual dimorphism in bladder cancer.},
author = {Zhu Q, Zhang G, Cao M, Huang H, He D, Zang Z, Xing J, Zhan M, Pei S, Deng X, Li J, Meng G, Xu J, Dai D, Hu G, Zheng M, Liu C, Qin J, Xiao Y.},
journal = {Nat Immunol},
year = {2025},
doi = {10.1038/s41590-025-02126-6},
pmid = {40217111}
}
@article{lin238591,
title = {Initial gut microbiota composition is a determining factor in the promotion of colorectal cancer by oral iron supplementation: evidence from a murine model.},
author = {Cuisiniere T, Hajjar R, Oliero M, Calve A, Fragoso G, Rendos HV, Gerkins C, Taleb N, Gagnon-Konamna M, Dagbert F, Loungnarath R, Sebajang H, Schwenter F, Wassef R, Ratelle R, De Broux E, Richard C, Santos MM.},
journal = {Microbiome},
year = {2025},
doi = {10.1186/s40168-025-02101-1},
pmid = {40259408}
}
@article{lin238638,
title = {Druggable proteins of Alistipes reveal promising antimicrobial targets against chronic intestinal inflammation.},
author = {Sohail S, Wisal A, Rana S, Abid Khan RM, Ullah A, Khan FA, Irfan M, Imran M, Carvalho PVSD, Rozental R, Shaheen F, Hassan SS.},
journal = {Front Pharmacol},
year = {2025},
doi = {10.3389/fphar.2025.1555062},
pmid = {40342998}
}
@article{lin238573,
title = {Consumption of only wild foods induces large scale, partially persistent alterations to the gut microbiome.},
author = {Rampelli S, Pomstra D, Barone M, Fabbrini M, Turroni S, Candela M, Henry AG.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-00319-5},
pmid = {40360545}
}
@article{lin238512,
title = {Therapeutic effect of Faecalibacterium longum CM04-06 on DSS-induced ulcerative colitis in mice.},
author = {Li X, He N, Wang H, Wu Z, Wang M, Liang H, Xiao L, Yang Z, Li C, Xu P, Dai T, Li S, Zou Y.},
journal = {J Appl Microbiol},
year = {2025},
doi = {10.1093/jambio/lxaf119},
pmid = {40372371}
}
@article{lin238544,
title = {Methanogenesis associated with altered microbial production of short-chain fatty acids and human-host metabolizable energy.},
author = {Dirks B, Davis TL, Carnero EA, Corbin KD, Smith SR, Rittmann BE, Krajmalnik-Brown R.},
journal = {ISME J},
year = {2025},
doi = {10.1093/ismejo/wraf103},
pmid = {40403748}
}
@article{lin238554,
title = {Sex-Specific Associations of Gut Microbiota Composition with Sarcopenia Defined by the Asian Working Group for Sarcopenia 2019 Consensus in Older Outpatients: Prospective Cross-Sectional Study in Japan.},
author = {Asaoka D, Toda K, Yoshimoto S, Katsumata N, Odamaki T, Iwabuchi N, Tanaka M, Xiao JZ, Nishikawa Y, Nomura O, Takeda T, Nagahara A, Koido S, Ohkusa T, Sato N.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17101746},
pmid = {40431485}
}
@article{lin238515,
title = {Mediation effect and metabolic pathways of gut microbiota in the associations between lifestyles and dyslipidemia.},
author = {Zeng L, Yu B, Zeng P, Duoji Z, Zuo H, Lian J, Yang T, Dai Y, Feng Y, Yu P, Yang J, Yang S, Dou Q.},
journal = {NPJ Biofilms Microbiomes},
year = {2025},
doi = {10.1038/s41522-025-00721-x},
pmid = {40436871}
}
@article{lin238552,
title = {Characteristics of the gut virome in patients with premalignant colorectal adenoma.},
author = {Zhang P, Tuo X, Jiang J, Zhang Y, Zhao J, Deng C, Zhao G, Cheng Y, Song L, Yang Y, Guo R, Zhang H, Zhao H, Ma S, Li L, Shi H.},
journal = {J Transl Med},
year = {2025},
doi = {10.1186/s12967-025-06404-7},
pmid = {40437611}
}
@article{lin238612,
title = {The gut microbiota-mediated ferroptosis pathway: a key mechanism of ginsenoside Rd against metabolism-associated fatty liver disease.},
author = {Liu W, Zhou X, Xiao L, Huang X, Chang D, Zhong X, Zeng M, Xian Y, Zheng Y, Huang W, Huang R, Huang M.},
journal = {Chin Med},
year = {2025},
doi = {10.1186/s13020-025-01121-1},
pmid = {40495179}
}
@article{lin238572,
title = {Assembled human microbiome and metabolome in chronic kidney disease: Dysbiosis a double-edged sword interlinking Circ-YAP1, Circ-APOE & Circ-SLC8A1.},
author = {Zaki EA, Afifi SM, Ammar NM, Kadry MO.},
journal = {Toxicol Rep},
year = {2025},
doi = {10.1016/j.toxrep.2025.102058},
pmid = {40520523}
}
@article{lin238523,
title = {Altered fecal microbial and metabolic profiles reveal potential mechanisms underlying anemia in patients with chronic renal failure.},
author = {Wang H, Xue W, Cheng J, He Y, Song Y, Hu D, Peng A, Li C, Bao H.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.03166-24},
pmid = {40525868}
}
@article{lin238654,
title = {Breaking the Cycle: Can Vitamin D Bridge the Gap Between Gut Microbiota and Immune Dynamics in Multiple Sclerosis?},
author = {Gencer Bingol F, Kocyigit E, Celik E, Agagunduz D, Budan F.},
journal = {Int J Mol Sci},
year = {2025},
doi = {10.3390/ijms26125464},
pmid = {40564928}
}
@article{lin238603,
title = {Clinical effectiveness of fecal microbial transplantation for metabolic syndrome: Advances in clinical efficacy and multi-omics research.},
author = {Wang H, Tian J, Mi J.},
journal = {Curr Res Microb Sci},
year = {2025},
doi = {10.1016/j.crmicr.2025.100415},
pmid = {40583967}
}
@article{lin238671,
title = {The dynamics of the gut microbiota in prediabetes during a four-year follow-up among European patients-an IMI-DIRECT prospective study.},
author = {Lyu L, Fan Y, Vogt JK, Clos-Garcia M, Bonnefond A, Pedersen HK, Dutta A, Koivula R, Sharma S, Allin KH, Brorsson C, Cederberg H, Chabanova E, De Masi F, Dermitzakis E, Elders PJ, Blom MT, Hollander M, Eriksen R, Forgie I, Frost G, Giordano GN, Grallert H, Haid M, Hansen TH, Jablonka B, Kokkola T, Mahajan A, Mari A, McDonald TJ, Musholt PB, Pavo I, Prehn C, Ridderstrale M, Ruetten H, Hart LM', Schwenk JM, Stankevic E, Thomsen HS, Vangipurapu J, Vestergaard H, Vinuela A, Walker M, Hansen T, Linneberg A, Nielsen HB, Brunak S, McCarthy MI, Froguel P, Adamski J, Franks PW, Laakso M, Beulens JWJ, Pearson E, Pedersen O.},
journal = {Genome Med},
year = {2025},
doi = {10.1186/s13073-025-01508-7},
pmid = {40665409}
}
@article{lin238618,
title = {Deciphering the Physiological Responses to the Intake of Plant-Based Meat Analogues: On the Track of Microbiota and Biomarkers in Serum and Urine.},
author = {Sanchez-Terron G, Martinez R, Morcuende D, Estevez M.},
journal = {J Agric Food Chem},
year = {2025},
doi = {10.1021/acs.jafc.5c02799},
pmid = {40671669}
}
@article{lin238543,
title = {Preliminary Study to Understand the Role of Gut Microbiota in Coronary Slow Flow Phenomenon (CSFP).},
author = {Gurol T, Karaman T, Gurol Y, Sezerman OU, Oktem Okullu S.},
journal = {Metabolites},
year = {2025},
doi = {10.3390/metabo15070475},
pmid = {40710575}
}
@article{lin238531,
title = {Effect of exercise on the human gut microbiota in individuals with overweight and obesity: a systematic review and meta-analysis of randomized controlled trials.},
author = {Kim YI, Choi W, Seo M, Ka S, Park J.},
journal = {Phys Act Nutr},
year = {2025},
doi = {10.20463/pan.2025.0014},
pmid = {40765072}
}
@article{lin238596,
title = {Intratumorally specific microbial-derived lipopolysaccharide contributes to non-small cell lung cancer progression.},
author = {Sha G, Wu Z, Wang B, Ding Y, Xiao Z, Zhang W, Zhou J, Zhou Y, Ji G, Tian Z, Zhang W, Zhao X.},
journal = {Virulence},
year = {2025},
doi = {10.1080/21505594.2025.2548626},
pmid = {40817754}
}
@article{lin238546,
title = {The Effects of Prebiotic Dietary Fibers, Probiotics, and Synbiotics on Gut Permeability and Immunity: A Systematic Review.},
author = {Maghsoumi-Norouzabad L, Bagherzadeh-Karimi A, Aliakbari Majd S, Hosseini L, Shahi F.},
journal = {Iran J Med Sci},
year = {2025},
doi = {10.30476/ijms.2024.102363.3525},
pmid = {40861839}
}
@article{lin238525,
title = {Association of Gut Dysbiosis with Disease Phenotype and Treatment in Systemic Lupus Erythematosus.},
author = {Medina-Martinez I, Gil-Gutierrez R, Garcia-Garcia J, de la Hera-Fernandez FJ, Navarrete-Navarrete N, Zamora-Pasadas M, Ortego-Centeno N, Callejas-Rubio JL, Garcia-Garcia F, Galvez-Peralta J, Rodriguez-Nogales A, Correa-Rodriguez M, Rueda-Medina B.},
journal = {Med Sci (Basel)},
year = {2025},
doi = {10.3390/medsci13030151},
pmid = {40981149}
}
@article{lin238532,
title = {Assessment of ecological fidelity of human microbiome-associated mice in observational studies and an interventional trial.},
author = {Wong MK, Armstrong E, Heirali AA, Schneeberger PHH, Chen H, Cochrane K, Sherriff K, Allen-Vercoe E, Siu LL, Spreafico A, Coburn B.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.01904-25},
pmid = {40996271}
}
@article{lin238536,
title = {Causal relationship between gut microbiota and pituitary neuroendocrine tumors: a bidirectional Mendelian randomization.},
author = {Wang W, Liu M, Wang Z, Ye W, Li X.},
journal = {Discov Oncol},
year = {2025},
doi = {10.1007/s12672-025-02958-6},
pmid = {41003835}
}
@article{lin238538,
title = {Exploring the Intestinal Microbiota Profile in Prostate Cancer Patients and Healthy Controls.},
author = {Cocomazzi G, Villani A, Mencarelli G, Contu V, De Ruvo D, Virgili E, Marino F, Baldini GM, Binda E, Parmegiani L, Ciampaglia W, Capone L, Perri F, Cisternino A, Pazienza V, Panebianco C.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13092105},
pmid = {41011437}
}
@article{lin238555,
title = {Sex chromosomes/hormones and the tumor microenvironment of non-reproductive cancers.},
author = {Zhang CM, Ge ZB, Zhou HH, Wei MX, Ding XY, Lin ZZ, Wang MY, Bai CJ.},
journal = {Front Immunol},
year = {2025},
doi = {10.3389/fimmu.2025.1642956},
pmid = {41019050}
}
@article{lin238589,
title = {Coenzyme A metabolism: a key driver of gut microbiota dynamics and metabolic profiles.},
author = {Bottcher J, Sibon OCM, El Aidy S.},
journal = {FEMS Microbiol Rev},
year = {2025},
doi = {10.1093/femsre/fuaf051},
pmid = {41074819}
}
@article{lin238511,
title = {Altered tryptophan metabolism and gut immune crosstalk in hypertensive middle-aged women.},
author = {Shah S, Mu C, Shen-Tu G, Schlicht K, Forkert ND, Laudes M, Kofeler HC, Shearer J.},
journal = {Am J Physiol Heart Circ Physiol},
year = {2025},
doi = {10.1152/ajpheart.00395.2025},
pmid = {41087031}
}
@article{lin238537,
title = {Multiomics Integration Reveals Microbial Gene Interactions Shaping Host Responses in a DSS-Induced Colitis Mouse Model.},
author = {Hong HH, Lee SY, Jang DH, Ju SE, Shim JE, Kim TH, Kang HS, Kim SM.},
journal = {J Microbiol Biotechnol},
year = {2025},
doi = {10.4014/jmb.2507.07010},
pmid = {41110987}
}
@article{lin238533,
title = {Structural and functional characterization of gut microbiota in dyslipidemic patients from high-altitude Tibetan pastoral areas.},
author = {Chen J, Luo Y, Hao Y, Wang Q, Wang Q.},
journal = {Front Nutr},
year = {2025},
doi = {10.3389/fnut.2025.1676238},
pmid = {41132557}
}
@article{lin238560,
title = {Evaluating the prebiotic activity of arabinogalactan on the human gut microbiota using 16S rRNA gene sequencing and Raman-activated cell sorting.},
author = {Rasoulimehrabani H, Khadem S, Hodzic A, Philipp M, Gallo R, Nikolov G, Seneca J, Ramesmayer J, Sivulic P, Berry D.},
journal = {Microbiome Res Rep},
year = {2025},
doi = {10.20517/mrr.2025.29},
pmid = {41133092}
}
@article{lin238561,
title = {Early antimicrobial regimen shapes gut microbiota and health trajectories in pigs: a longitudinal study from weaning to finishing.},
author = {Correa F, Luise D, Palladino G, Estelle J, Turroni S, Scicchitano D, Babbi G, Rampelli S, Candela M, Martelli PL, Stefanelli C, Perez-Calvo E, Trevisi P.},
journal = {Anim Microbiome},
year = {2025},
doi = {10.1186/s42523-025-00477-x},
pmid = {41137177}
}
@article{lin238530,
title = {Mediating Effects of Immunophenotypes on the Causal Relationship of Gut Microbiota and Their Metabolic Pathways With Osteonecrosis: A Mendelian Randomization Analysis.},
author = {Wang M, Meng Y, Shen Q, Meng H.},
journal = {Mediators Inflamm},
year = {2025},
doi = {10.1155/mi/9323113},
pmid = {41194914}
}
@article{lin238516,
title = {Gut microbiota dysbiosis and short-chain fatty acid depletion in phlegm-dampness polycystic ovary syndrome: a cross-sectional 16S rRNA sequencing analysis.},
author = {Xia XY, Chen Y, Zhang XJ, Wang J, Xu HY, Zhao R.},
journal = {BMC Endocr Disord},
year = {2025},
doi = {10.1186/s12902-025-02076-y},
pmid = {41214659}
}
@article{lin238614,
title = {Oral administration of the probiotic strain Lactobacillus helveticus BGRA43 reduces high-fat diet-induced hepatic steatosis in mice and restores gut microbiota composition.},
author = {Teofilovic A, Vrataric M, Bursac B, Gligorovska L, Vojnovic Milutinovic D, Stanisavljevic N, Strahinic I, Misic D, Nikolic F, Pavlovic B, Joncic Savic K, Aydogan C, Djordjevic A.},
journal = {Front Pharmacol},
year = {2025},
doi = {10.3389/fphar.2025.1688777},
pmid = {41262214}
}
@article{lin238585,
title = {Prebiotic-Engineered Oral Nanoplatform against Ulcerative Colitis via Photodynamic Remodeling of Gut Microbiota and Macrophage Polarization.},
author = {He N, Jiang H, Dai T, Kim GS, Liu P, Zhao Y, Li S, Cao J, Li Z.},
journal = {Biomater Res},
year = {2025},
doi = {10.34133/bmr.0283},
pmid = {41277912}
}
@article{lin238513,
title = {Body mass index distinctly modulates the associations between Alistipes and CRP/IL-6 in metabolic and lupus inflammatory features.},
author = {Chero-Sandoval L, Higuera-Gomez A, de Cuevillas B, Castejon R, Martinez-Urbistondo M, Mellor-Pita S, Moreno-Torres V, de Luis D, Cuevas-Sierra A, Martinez JA.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0335452},
pmid = {41289287}
}
@article{lin238519,
title = {Comparing alignment and de-novo approaches for gut microbiota metagenomic data analysis reveals differences in taxonomic resolution and novel functional insights.},
author = {Kuzmichenko P, Fedorov D, Galeeva J, Postoeva A, Krieger E, Kudryavtsev A, Pavlenko A, Vvedensky A, Starikova E, Govorun V, Ilina E.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-26617-6},
pmid = {41309890}
}