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    title   = {Molecular cloning, characterization, and complete nucleotide sequence of the gene for pneumolysin, the sulfhydryl-activated toxin of Streptococcus pneumoniae.},    
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    title   = {Effect of immunization with pneumolysin on survival time of mice challenged with Streptococcus pneumoniae.},    
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    title   = {Immunization of mice with pneumolysin toxoid confers a significant degree of protection against at least nine serotypes of Streptococcus pneumoniae.},    
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    doi     = {10.1128/iai.62.12.5683-5688.1994},    
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    title   = {A role for pneumolysin but not neuraminidase in the hearing loss and cochlear damage induced by experimental pneumococcal meningitis in guinea pigs.},    
    author  = {Winter AJ, Comis SD, Osborne MP, Tarlow MJ, Stephen J, Andrew PW, Hill J, Mitchell TJ.},    
    journal = {Infect Immun},    
    year    = {1997},    
    doi     = {10.1128/iai.65.11.4411-4418.1997},    
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    title   = {Activities of new fluoroquinolones against fluoroquinolone-resistant pathogens of the lower respiratory tract.},    
    author  = {Piddock LJ, Johnson M, Ricci V, Hill SL.},    
    journal = {Antimicrob Agents Chemother},    
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    title   = {Comparative virulence of Streptococcus pneumoniae strains with insertion-duplication, point, and deletion mutations in the pneumolysin gene.},    
    author  = {Berry AM, Ogunniyi AD, Miller DC, Paton JC.},    
    journal = {Infect Immun},    
    year    = {1999},    
    doi     = {10.1128/iai.67.2.981-985.1999},    
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    title   = {Rapid and reliable identification of Streptococcus pneumoniae isolates by pneumolysin-mediated agglutination.},    
    author  = {Cima-Cabal MD, Vazquez F, de los Toyos JR, Mendez FJ.},    
    journal = {J Clin Microbiol},    
    year    = {1999},    
    doi     = {10.1128/jcm.37.6.1964-1966.1999},    
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    }
    @article{lin299479,
    title   = {Effect of carbon dioxide on testing of susceptibilities of respiratory tract pathogens to macrolide and azalide antimicrobial agents.},    
    author  = {Johnson MM, Hill SL, Piddock LJ.},    
    journal = {Antimicrob Agents Chemother},    
    year    = {1999},    
    doi     = {10.1128/aac.43.8.1862},    
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    }
    @article{lin299476,
    title   = {Additive attenuation of virulence of Streptococcus pneumoniae by mutation of the genes encoding pneumolysin and other putative pneumococcal virulence proteins.},    
    author  = {Berry AM, Paton JC.},    
    journal = {Infect Immun},    
    year    = {2000},    
    doi     = {10.1128/iai.68.1.133-140.2000},    
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    title   = {Host cellular immune response to pneumococcal lung infection in mice.},    
    author  = {Kadioglu A, Gingles NA, Grattan K, Kerr A, Mitchell TJ, Andrew PW.},    
    journal = {Infect Immun},    
    year    = {2000},    
    doi     = {10.1128/iai.68.2.492-501.2000},    
    pmid    = {10639409}        
    }
    @article{lin299452,
    title   = {Evaluation of the virulence of a Streptococcus pneumoniae neuraminidase-deficient mutant in nasopharyngeal colonization and development of otitis media in the chinchilla model.},    
    author  = {Tong HH, Blue LE, James MA, DeMaria TF.},    
    journal = {Infect Immun},    
    year    = {2000},    
    doi     = {10.1128/iai.68.2.921-924.2000},    
    pmid    = {10639464}        
    }
    @article{lin299466,
    title   = {Microarray-based identification of a novel Streptococcus pneumoniae regulon controlled by an autoinduced peptide.},    
    author  = {de Saizieu A, Gardes C, Flint N, Wagner C, Kamber M, Mitchell TJ, Keck W, Amrein KE, Lange R.},    
    journal = {J Bacteriol},    
    year    = {2000},    
    doi     = {10.1128/jb.182.17.4696-4703.2000},    
    pmid    = {10940007}        
    }
    @article{lin299490,
    title   = {Role of genetic resistance in invasive pneumococcal infection: identification and study of susceptibility and resistance in inbred mouse strains.},    
    author  = {Gingles NA, Alexander JE, Kadioglu A, Andrew PW, Kerr A, Mitchell TJ, Hopes E, Denny P, Brown S, Jones HB, Little S, Booth GC, McPheat WL.},    
    journal = {Infect Immun},    
    year    = {2001},    
    doi     = {10.1128/iai.69.1.426-434.2001},    
    pmid    = {11119534}        
    }
    @article{lin299420,
    title   = {Rapid real-time PCR for determination of penicillin susceptibility in pneumococcal meningitis, including culture-negative cases.},    
    author  = {Kearns AM, Graham C, Burdess D, Heatherington J, Freeman R.},    
    journal = {J Clin Microbiol},    
    year    = {2002},    
    doi     = {10.1128/jcm.40.2.682-684.2002},    
    pmid    = {11825996}        
    }
    @article{lin299459,
    title   = {Expression of efflux pump gene pmrA in fluoroquinolone-resistant and -susceptible clinical isolates of Streptococcus pneumoniae.},    
    author  = {Piddock LJ, Johnson MM, Simjee S, Pumbwe L.},    
    journal = {Antimicrob Agents Chemother},    
    year    = {2002},    
    doi     = {10.1128/aac.46.3.808-812.2002},    
    pmid    = {11850265}        
    }
    @article{lin299474,
    title   = {Accumulation of 10 fluoroquinolones by wild-type or efflux mutant Streptococcus pneumoniae.},    
    author  = {Piddock LJ, Johnson MM.},    
    journal = {Antimicrob Agents Chemother},    
    year    = {2002},    
    doi     = {10.1128/aac.46.3.813-820.2002},    
    pmid    = {11850266}        
    }
    @article{lin299489,
    title   = {Role of inflammatory mediators in resistance and susceptibility to pneumococcal infection.},    
    author  = {Kerr AR, Irvine JJ, Search JJ, Gingles NA, Kadioglu A, Andrew PW, McPheat WL, Booth CG, Mitchell TJ.},    
    journal = {Infect Immun},    
    year    = {2002},    
    doi     = {10.1128/iai.70.3.1547-1557.2002},    
    pmid    = {11854243}        
    }
    @article{lin299447,
    title   = {Upper and lower respiratory tract infection by Streptococcus pneumoniae is affected by pneumolysin deficiency and differences in capsule type.},    
    author  = {Kadioglu A, Taylor S, Iannelli F, Pozzi G, Mitchell TJ, Andrew PW.},    
    journal = {Infect Immun},    
    year    = {2002},    
    doi     = {10.1128/iai.70.6.2886-2890.2002},    
    pmid    = {12010976}        
    }
    @article{lin299482,
    title   = {The human complement regulator factor H binds pneumococcal surface protein PspC via short consensus repeats 13 to 15.},    
    author  = {Duthy TG, Ormsby RJ, Giannakis E, Ogunniyi AD, Stroeher UH, Paton JC, Gordon DL.},    
    journal = {Infect Immun},    
    year    = {2002},    
    doi     = {10.1128/iai.70.10.5604-5611.2002},    
    pmid    = {12228288}        
    }
    @article{lin299465,
    title   = {Evaluation of semiautomated multiplex PCR assay for determination of Streptococcus pneumoniae serotypes and serogroups.},    
    author  = {Lawrence ER, Griffiths DB, Martin SA, George RC, Hall LM.},    
    journal = {J Clin Microbiol},    
    year    = {2003},    
    doi     = {10.1128/jcm.41.2.601-607.2003},    
    pmid    = {12574253}        
    }
    @article{lin299462,
    title   = {Pneumococcal behavior and host responses during bronchopneumonia are affected differently by the cytolytic and complement-activating activities of pneumolysin.},    
    author  = {Jounblat R, Kadioglu A, Mitchell TJ, Andrew PW.},    
    journal = {Infect Immun},    
    year    = {2003},    
    doi     = {10.1128/iai.71.4.1813-1819.2003},    
    pmid    = {12654795}        
    }
    @article{lin299468,
    title   = {Contribution of a response regulator to the virulence of Streptococcus pneumoniae is strain dependent.},    
    author  = {Blue CE, Mitchell TJ.},    
    journal = {Infect Immun},    
    year    = {2003},    
    doi     = {10.1128/iai.71.8.4405-4413.2003},    
    pmid    = {12874319}        
    }
    @article{lin299480,
    title   = {ZmpB, a novel virulence factor of Streptococcus pneumoniae that induces tumor necrosis factor alpha production in the respiratory tract.},    
    author  = {Blue CE, Paterson GK, Kerr AR, Berge M, Claverys JP, Mitchell TJ.},    
    journal = {Infect Immun},    
    year    = {2003},    
    doi     = {10.1128/iai.71.9.4925-4935.2003},    
    pmid    = {12933834}        
    }
    @article{lin299408,
    title   = {The MicAB two-component signaling system is involved in virulence of Streptococcus pneumoniae.},    
    author  = {Kadioglu A, Echenique J, Manco S, Trombe MC, Andrew PW.},    
    journal = {Infect Immun},    
    year    = {2003},    
    doi     = {10.1128/iai.71.11.6676-6679.2003},    
    pmid    = {14573696}        
    }
    @article{lin299481,
    title   = {CD4-T-lymphocyte interactions with pneumolysin and pneumococci suggest a crucial protective role in the host response to pneumococcal infection.},    
    author  = {Kadioglu A, Coward W, Colston MJ, Hewitt CR, Andrew PW.},    
    journal = {Infect Immun},    
    year    = {2004},    
    doi     = {10.1128/iai.72.5.2689-2697.2004},    
    pmid    = {15102777}        
    }
    @article{lin299438,
    title   = {Role of HtrA in the virulence and competence of Streptococcus pneumoniae.},    
    author  = {Ibrahim YM, Kerr AR, McCluskey J, Mitchell TJ.},    
    journal = {Infect Immun},    
    year    = {2004},    
    doi     = {10.1128/iai.72.6.3584-3591.2004},    
    pmid    = {15155668}        
    }
    @article{lin299464,
    title   = {Protection against pneumococcal pneumonia in mice by monoclonal antibodies to pneumolysin.},    
    author  = {Garcia-Suarez Mdel M, Cima-Cabal MD, Florez N, Garcia P, Cernuda-Cernuda R, Astudillo A, Vazquez F, De los Toyos JR, Mendez FJ.},    
    journal = {Infect Immun},    
    year    = {2004},    
    doi     = {10.1128/iai.72.8.4534-4540.2004},    
    pmid    = {15271913}        
    }
    @article{lin299439,
    title   = {Control of virulence by the two-component system CiaR/H is mediated via HtrA, a major virulence factor of Streptococcus pneumoniae.},    
    author  = {Ibrahim YM, Kerr AR, McCluskey J, Mitchell TJ.},    
    journal = {J Bacteriol},    
    year    = {2004},    
    doi     = {10.1128/jb.186.16.5258-5266.2004},    
    pmid    = {15292127}        
    }
    @article{lin299428,
    title   = {Contribution of the ATP-dependent protease ClpCP to the autolysis and virulence of Streptococcus pneumoniae.},    
    author  = {Ibrahim YM, Kerr AR, Silva NA, Mitchell TJ.},    
    journal = {Infect Immun},    
    year    = {2005},    
    doi     = {10.1128/iai.73.2.730-740.2005},    
    pmid    = {15664911}        
    }
    @article{lin299469,
    title   = {Innate immune defense against pneumococcal pneumonia requires pulmonary complement component C3.},    
    author  = {Kerr AR, Paterson GK, Riboldi-Tunnicliffe A, Mitchell TJ.},    
    journal = {Infect Immun},    
    year    = {2005},    
    doi     = {10.1128/iai.73.7.4245-4252.2005},    
    pmid    = {15972516}        
    }
    @article{lin299461,
    title   = {The role of surfactant protein D in the colonisation of the respiratory tract and onset of bacteraemia during pneumococcal pneumonia.},    
    author  = {Jounblat R, Clark H, Eggleton P, Hawgood S, Andrew PW, Kadioglu A.},    
    journal = {Respir Res},    
    year    = {2005},    
    doi     = {10.1186/1465-9921-6-126},    
    pmid    = {16255775}        
    }
    @article{lin299453,
    title   = {Pneumococcal neuraminidases A and B both have essential roles during infection of the respiratory tract and sepsis.},    
    author  = {Manco S, Hernon F, Yesilkaya H, Paton JC, Andrew PW, Kadioglu A.},    
    journal = {Infect Immun},    
    year    = {2006},    
    doi     = {10.1128/iai.01237-05},    
    pmid    = {16790774}        
    }
    @article{lin299430,
    title   = {The contribution of PspC to pneumococcal virulence varies between strains and is accomplished by both complement evasion and complement-independent mechanisms.},    
    author  = {Kerr AR, Paterson GK, McCluskey J, Iannelli F, Oggioni MR, Pozzi G, Mitchell TJ.},    
    journal = {Infect Immun},    
    year    = {2006},    
    doi     = {10.1128/iai.00543-06},    
    pmid    = {16926426}        
    }
    @article{lin299449,
    title   = {Differential role of CbpA and PspA in modulation of in vitro CXC chemokine responses of respiratory epithelial cells to infection with Streptococcus pneumoniae.},    
    author  = {Graham RM, Paton JC.},    
    journal = {Infect Immun},    
    year    = {2006},    
    doi     = {10.1128/iai.00954-06},    
    pmid    = {17000730}        
    }
    @article{lin299458,
    title   = {Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6.},    
    author  = {Lanie JA, Ng WL, Kazmierczak KM, Andrzejewski TM, Davidsen TM, Wayne KJ, Tettelin H, Glass JI, Winkler ME.},    
    journal = {J Bacteriol},    
    year    = {2007},    
    doi     = {10.1128/jb.01148-06},    
    pmid    = {17041037}        
    }
    @article{lin299455,
    title   = {Regulation of gene expression in Streptococcus pneumoniae by response regulator 09 is strain dependent.},    
    author  = {Hendriksen WT, Silva N, Bootsma HJ, Blue CE, Paterson GK, Kerr AR, de Jong A, Kuipers OP, Hermans PW, Mitchell TJ.},    
    journal = {J Bacteriol},    
    year    = {2007},    
    doi     = {10.1128/jb.01144-06},    
    pmid    = {17085554}        
    }
    @article{lin299451,
    title   = {The role of pneumolysin in mediating lung damage in a lethal pneumococcal pneumonia murine model.},    
    author  = {Garcia-Suarez Mdel M, Florez N, Astudillo A, Vazquez F, Villaverde R, Fabrizio K, Pirofski LA, Mendez FJ.},    
    journal = {Respir Res},    
    year    = {2007},    
    doi     = {10.1186/1465-9921-8-3},    
    pmid    = {17257395}        
    }
    @article{lin299456,
    title   = {Analysis of the in vitro transcriptional response of human pharyngeal epithelial cells to adherent Streptococcus pneumoniae: evidence for a distinct response to encapsulated strains.},    
    author  = {Bootsma HJ, Egmont-Petersen M, Hermans PW.},    
    journal = {Infect Immun},    
    year    = {2007},    
    doi     = {10.1128/iai.01823-06},    
    pmid    = {17709418}        
    }
    @article{lin299454,
    title   = {CodY of Streptococcus pneumoniae: link between nutritional gene regulation and colonization.},    
    author  = {Hendriksen WT, Bootsma HJ, Estevao S, Hoogenboezem T, de Jong A, de Groot R, Kuipers OP, Hermans PW.},    
    journal = {J Bacteriol},    
    year    = {2008},    
    doi     = {10.1128/jb.00917-07},    
    pmid    = {18024519}        
    }
    @article{lin299478,
    title   = {Pneumococcal virulence gene expression and host cytokine profiles during pathogenesis of invasive disease.},    
    author  = {Mahdi LK, Ogunniyi AD, LeMessurier KS, Paton JC.},    
    journal = {Infect Immun},    
    year    = {2008},    
    doi     = {10.1128/iai.01161-07},    
    pmid    = {18039836}        
    }
    @article{lin299446,
    title   = {Site-specific contributions of glutamine-dependent regulator GlnR and GlnR-regulated genes to virulence of Streptococcus pneumoniae.},    
    author  = {Hendriksen WT, Kloosterman TG, Bootsma HJ, Estevao S, de Groot R, Kuipers OP, Hermans PW.},    
    journal = {Infect Immun},    
    year    = {2008},    
    doi     = {10.1128/iai.01004-07},    
    pmid    = {18174343}        
    }
    @article{lin299441,
    title   = {Critical involvement of pneumolysin in production of interleukin-1alpha and caspase-1-dependent cytokines in infection with Streptococcus pneumoniae in vitro: a novel function of pneumolysin in caspase-1 activation.},    
    author  = {Shoma S, Tsuchiya K, Kawamura I, Nomura T, Hara H, Uchiyama R, Daim S, Mitsuyama M.},    
    journal = {Infect Immun},    
    year    = {2008},    
    doi     = {10.1128/iai.01269-07},    
    pmid    = {18195026}        
    }
    @article{lin299450,
    title   = {The efflux pump inhibitor reserpine selects multidrug-resistant Streptococcus pneumoniae strains that overexpress the ABC transporters PatA and PatB.},    
    author  = {Garvey MI, Piddock LJ.},    
    journal = {Antimicrob Agents Chemother},    
    year    = {2008},    
    doi     = {10.1128/aac.01644-07},    
    pmid    = {18362193}        
    }
    @article{lin299424,
    title   = {Characterization of in vitro-generated and clinical optochin-resistant strains of Streptococcus pneumoniae isolated from Argentina.},    
    author  = {Cortes PR, Orio AG, Regueira M, Pinas GE, Echenique J.},    
    journal = {J Clin Microbiol},    
    year    = {2008},    
    doi     = {10.1128/jcm.02318-07},    
    pmid    = {18417665}        
    }
    @article{lin299442,
    title   = {Pneumolysin released during Streptococcus pneumoniae autolysis is a potent activator of intracellular oxygen radical production in neutrophils.},    
    author  = {Martner A, Dahlgren C, Paton JC, Wold AE.},    
    journal = {Infect Immun},    
    year    = {2008},    
    doi     = {10.1128/iai.01747-07},    
    pmid    = {18559434}        
    }
    @article{lin299475,
    title   = {Influences of capsule on cell shape and chain formation of wild-type and pcsB mutants of serotype 2 Streptococcus pneumoniae.},    
    author  = {Barendt SM, Land AD, Sham LT, Ng WL, Tsui HC, Arnold RJ, Winkler ME.},    
    journal = {J Bacteriol},    
    year    = {2009},    
    doi     = {10.1128/jb.01505-08},    
    pmid    = {19270090}        
    }
    @article{lin299423,
    title   = {The surface-anchored NanA protein promotes pneumococcal brain endothelial cell invasion.},    
    author  = {Uchiyama S, Carlin AF, Khosravi A, Weiman S, Banerjee A, Quach D, Hightower G, Mitchell TJ, Doran KS, Nizet V.},    
    journal = {J Exp Med},    
    year    = {2009},    
    doi     = {10.1084/jem.20090386},    
    pmid    = {19687228}        
    }
    @article{lin299414,
    title   = {Immunization with a combination of three pneumococcal proteins confers additive and broad protection against Streptococcus pneumoniae Infections in Mice.},    
    author  = {Wu K, Zhang X, Shi J, Li N, Li D, Luo M, Cao J, Yin N, Wang H, Xu W, He Y, Yin Y.},    
    journal = {Infect Immun},    
    year    = {2010},    
    doi     = {10.1128/iai.00473-09},    
    pmid    = {20038538}        
    }
    @article{lin299470,
    title   = {The pneumococcal cell envelope stress-sensing system LiaFSR is activated by murein hydrolases and lipid II-interacting antibiotics.},    
    author  = {Eldholm V, Gutt B, Johnsborg O, Bruckner R, Maurer P, Hakenbeck R, Mascher T, Havarstein LS.},    
    journal = {J Bacteriol},    
    year    = {2010},    
    doi     = {10.1128/jb.01489-09},    
    pmid    = {20118250}        
    }
    @article{lin299436,
    title   = {Activation of brain endothelium by pneumococcal neuraminidase NanA promotes bacterial internalization.},    
    author  = {Banerjee A, Van Sorge NM, Sheen TR, Uchiyama S, Mitchell TJ, Doran KS.},    
    journal = {Cell Microbiol},    
    year    = {2010},    
    doi     = {10.1111/j.1462-5822.2010.01490.x},    
    pmid    = {20557315}        
    }
    @article{lin299472,
    title   = {Human transferrin confers serum resistance against Bacillus anthracis.},    
    author  = {Rooijakkers SH, Rasmussen SL, McGillivray SM, Bartnikas TB, Mason AB, Friedlander AM, Nizet V.},    
    journal = {J Biol Chem},    
    year    = {2010},    
    doi     = {10.1074/jbc.m110.154930},    
    pmid    = {20615872}        
    }
    @article{lin299413,
    title   = {Localization and cellular amounts of the WalRKJ (VicRKX) two-component regulatory system proteins in serotype 2 Streptococcus pneumoniae.},    
    author  = {Wayne KJ, Sham LT, Tsui HC, Gutu AD, Barendt SM, Keen SK, Winkler ME.},    
    journal = {J Bacteriol},    
    year    = {2010},    
    doi     = {10.1128/jb.00578-10},    
    pmid    = {20622066}        
    }
    @article{lin299471,
    title   = {Distinct cell death programs in monocytes regulate innate responses following challenge with common causes of invasive bacterial disease.},    
    author  = {Webster SJ, Daigneault M, Bewley MA, Preston JA, Marriott HM, Walmsley SR, Read RC, Whyte MK, Dockrell DH.},    
    journal = {J Immunol},    
    year    = {2010},    
    doi     = {10.4049/jimmunol.1000805},    
    pmid    = {20656927}        
    }
    @article{lin299394,
    title   = {Overexpression of patA and patB, which encode ABC transporters, is associated with fluoroquinolone resistance in clinical isolates of Streptococcus pneumoniae.},    
    author  = {Garvey MI, Baylay AJ, Wong RL, Piddock LJ.},    
    journal = {Antimicrob Agents Chemother},    
    year    = {2011},    
    doi     = {10.1128/aac.00672-10},    
    pmid    = {20937787}        
    }
    @article{lin299460,
    title   = {Impact of glutamine transporters on pneumococcal fitness under infection-related conditions.},    
    author  = {Hartel T, Klein M, Koedel U, Rohde M, Petruschka L, Hammerschmidt S.},    
    journal = {Infect Immun},    
    year    = {2011},    
    doi     = {10.1128/iai.00855-10},    
    pmid    = {21078855}        
    }
    @article{lin299429,
    title   = {Pneumolysin activates the NLRP3 inflammasome and promotes proinflammatory cytokines independently of TLR4.},    
    author  = {McNeela EA, Burke A, Neill DR, Baxter C, Fernandes VE, Ferreira D, Smeaton S, El-Rachkidy R, McLoughlin RM, Mori A, Moran B, Fitzgerald KA, Tschopp J, Petrilli V, Andrew PW, Kadioglu A, Lavelle EC.},    
    journal = {PLoS Pathog},    
    year    = {2010},    
    doi     = {10.1371/journal.ppat.1001191},    
    pmid    = {21085613}        
    }
    @article{lin299432,
    title   = {Immunization with a ZmpB-based protein vaccine could protect against pneumococcal diseases in mice.},    
    author  = {Gong Y, Xu W, Cui Y, Zhang X, Yao R, Li D, Wang H, He Y, Cao J, Yin Y.},    
    journal = {Infect Immun},    
    year    = {2011},    
    doi     = {10.1128/iai.00717-10},    
    pmid    = {21098102}        
    }
    @article{lin299445,
    title   = {Novel bacterial NAD+-dependent DNA ligase inhibitors with broad-spectrum activity and antibacterial efficacy in vivo.},    
    author  = {Mills SD, Eakin AE, Buurman ET, Newman JV, Gao N, Huynh H, Johnson KD, Lahiri S, Shapiro AB, Walkup GK, Yang W, Stokes SS.},    
    journal = {Antimicrob Agents Chemother},    
    year    = {2011},    
    doi     = {10.1128/aac.01181-10},    
    pmid    = {21189350}        
    }
    @article{lin299486,
    title   = {A cardinal role for cathepsin d in co-ordinating the host-mediated apoptosis of macrophages and killing of pneumococci.},    
    author  = {Bewley MA, Marriott HM, Tulone C, Francis SE, Mitchell TJ, Read RC, Chain B, Kroemer G, Whyte MK, Dockrell DH.},    
    journal = {PLoS Pathog},    
    year    = {2011},    
    doi     = {10.1371/journal.ppat.1001262},    
    pmid    = {21298030}        
    }
    @article{lin299399,
    title   = {Proteomic evaluation and validation of cathepsin D regulated proteins in macrophages exposed to Streptococcus pneumoniae.},    
    author  = {Bewley MA, Pham TK, Marriott HM, Noirel J, Chu HP, Ow SY, Ryazanov AG, Read RC, Whyte MK, Chain B, Wright PC, Dockrell DH.},    
    journal = {Mol Cell Proteomics},    
    year    = {2011},    
    doi     = {10.1074/mcp.m111.008193},    
    pmid    = {21474794}        
    }
    @article{lin299448,
    title   = {A variable region within the genome of Streptococcus pneumoniae contributes to strain-strain variation in virulence.},    
    author  = {Harvey RM, Stroeher UH, Ogunniyi AD, Smith-Vaughan HC, Leach AJ, Paton JC.},    
    journal = {PLoS One},    
    year    = {2011},    
    doi     = {10.1371/journal.pone.0019650},    
    pmid    = {21573186}        
    }
    @article{lin299463,
    title   = {Role of the single-stranded DNA-binding protein SsbB in pneumococcal transformation: maintenance of a reservoir for genetic plasticity.},    
    author  = {Attaiech L, Olivier A, Mortier-Barriere I, Soulet AL, Granadel C, Martin B, Polard P, Claverys JP.},    
    journal = {PLoS Genet},    
    year    = {2011},    
    doi     = {10.1371/journal.pgen.1002156},    
    pmid    = {21738490}        
    }
    @article{lin299444,
    title   = {Two DHH subfamily 1 proteins contribute to pneumococcal virulence and confer protection against pneumococcal disease.},    
    author  = {Cron LE, Stol K, Burghout P, van Selm S, Simonetti ER, Bootsma HJ, Hermans PW.},    
    journal = {Infect Immun},    
    year    = {2011},    
    doi     = {10.1128/iai.01383-10},    
    pmid    = {21768284}        
    }
    @article{lin299403,
    title   = {Pneumolysin with low hemolytic activity confers an early growth advantage to Streptococcus pneumoniae in the blood.},    
    author  = {Harvey RM, Ogunniyi AD, Chen AY, Paton JC.},    
    journal = {Infect Immun},    
    year    = {2011},    
    doi     = {10.1128/iai.05418-11},    
    pmid    = {21788389}        
    }
    @article{lin299398,
    title   = {Lowering the threshold of lung innate immune cell activation alters susceptibility to secondary bacterial superinfection.},    
    author  = {Goulding J, Godlee A, Vekaria S, Hilty M, Snelgrove R, Hussell T.},    
    journal = {J Infect Dis},    
    year    = {2011},    
    doi     = {10.1093/infdis/jir467},    
    pmid    = {21881124}        
    }
    @article{lin299417,
    title   = {Critical roles of ASC inflammasomes in caspase-1 activation and host innate resistance to Streptococcus pneumoniae infection.},    
    author  = {Fang R, Tsuchiya K, Kawamura I, Shen Y, Hara H, Sakai S, Yamamoto T, Fernandes-Alnemri T, Yang R, Hernandez-Cuellar E, Dewamitta SR, Xu Y, Qu H, Alnemri ES, Mitsuyama M.},    
    journal = {J Immunol},    
    year    = {2011},    
    doi     = {10.4049/jimmunol.1100381},    
    pmid    = {21957143}        
    }
    @article{lin299485,
    title   = {Acquisition of pneumococci specific effector and regulatory Cd4+ T cells localising within human upper respiratory-tract mucosal lymphoid tissue.},    
    author  = {Pido-Lopez J, Kwok WW, Mitchell TJ, Heyderman RS, Williams NA.},    
    journal = {PLoS Pathog},    
    year    = {2011},    
    doi     = {10.1371/journal.ppat.1002396},    
    pmid    = {22144893}        
    }
    @article{lin299443,
    title   = {Leukocyte inflammatory responses provoked by pneumococcal sialidase.},    
    author  = {Chang YC, Uchiyama S, Varki A, Nizet V.},    
    journal = {mBio},    
    year    = {2012},    
    doi     = {10.1128/mbio.00220-11},    
    pmid    = {22215570}        
    }
    @article{lin299409,
    title   = {alpha-Enolase of Streptococcus pneumoniae induces formation of neutrophil extracellular traps.},    
    author  = {Mori Y, Yamaguchi M, Terao Y, Hamada S, Ooshima T, Kawabata S.},    
    journal = {J Biol Chem},    
    year    = {2012},    
    doi     = {10.1074/jbc.m111.280321},    
    pmid    = {22262863}        
    }
    @article{lin299349,
    title   = {Novel molecular method for identification of Streptococcus pneumoniae applicable to clinical microbiology and 16S rRNA sequence-based microbiome studies.},    
    author  = {Scholz CF, Poulsen K, Kilian M.},    
    journal = {J Clin Microbiol},    
    year    = {2012},    
    doi     = {10.1128/jcm.00365-12},    
    pmid    = {22442329}        
    }
    @article{lin299434,
    title   = {T regulatory cells control susceptibility to invasive pneumococcal pneumonia in mice.},    
    author  = {Neill DR, Fernandes VE, Wisby L, Haynes AR, Ferreira DM, Laher A, Strickland N, Gordon SB, Denny P, Kadioglu A, Andrew PW.},    
    journal = {PLoS Pathog},    
    year    = {2012},    
    doi     = {10.1371/journal.ppat.1002660},    
    pmid    = {22563306}        
    }
    @article{lin299426,
    title   = {Identification of genes that contribute to the pathogenesis of invasive pneumococcal disease by in vivo transcriptomic analysis.},    
    author  = {Ogunniyi AD, Mahdi LK, Trappetti C, Verhoeven N, Mermans D, Van der Hoek MB, Plumptre CD, Paton JC.},    
    journal = {Infect Immun},    
    year    = {2012},    
    doi     = {10.1128/iai.00295-12},    
    pmid    = {22778095}        
    }
    @article{lin299437,
    title   = {The lectin pathway of complement activation is a critical component of the innate immune response to pneumococcal infection.},    
    author  = {Ali YM, Lynch NJ, Haleem KS, Fujita T, Endo Y, Hansen S, Holmskov U, Takahashi K, Stahl GL, Dudler T, Girija UV, Wallis R, Kadioglu A, Stover CM, Andrew PW, Schwaeble WJ.},    
    journal = {PLoS Pathog},    
    year    = {2012},    
    doi     = {10.1371/journal.ppat.1002793},    
    pmid    = {22792067}        
    }
    @article{lin299419,
    title   = {Interplay between manganese and iron in pneumococcal pathogenesis: role of the orphan response regulator RitR.},    
    author  = {Ong CL, Potter AJ, Trappetti C, Walker MJ, Jennings MP, Paton JC, McEwan AG.},    
    journal = {Infect Immun},    
    year    = {2013},    
    doi     = {10.1128/iai.00805-12},    
    pmid    = {23184523}        
    }
    @article{lin299393,
    title   = {Parenteral fluids do not affect pulmonary immune responses to influenza or susceptibility to secondary bacterial pneumonia in mice.},    
    author  = {Sanders RD, Godlee A, Goulding JC, Ma D, Maze M, Hussell T.},    
    journal = {Influenza Other Respir Viruses},    
    year    = {2013},    
    doi     = {10.1111/irv.12066},    
    pmid    = {23279978}        
    }
    @article{lin299405,
    title   = {Benzodiazepine augmented gamma-amino-butyric acid signaling increases mortality from pneumonia in mice.},    
    author  = {Sanders RD, Godlee A, Fujimori T, Goulding J, Xin G, Salek-Ardakani S, Snelgrove RJ, Ma D, Maze M, Hussell T.},    
    journal = {Crit Care Med},    
    year    = {2013},    
    doi     = {10.1097/ccm.0b013e31827c0c8d},    
    pmid    = {23478657}        
    }
    @article{lin299401,
    title   = {Surface association of Pht proteins of Streptococcus pneumoniae.},    
    author  = {Plumptre CD, Ogunniyi AD, Paton JC.},    
    journal = {Infect Immun},    
    year    = {2013},    
    doi     = {10.1128/iai.00562-13},    
    pmid    = {23876799}        
    }
    @article{lin299358,
    title   = {Screening and identification of DnaJ interaction proteins in Streptococcus pneumoniae.},    
    author  = {Cai Y, Yan W, Xu W, Yin Y, He Y, Wang H, Zhang X.},    
    journal = {Curr Microbiol},    
    year    = {2013},    
    doi     = {10.1007/s00284-013-0424-4},    
    pmid    = {23907491}        
    }
    @article{lin299425,
    title   = {A novel C5a-derived immunobiotic peptide reduces Streptococcus agalactiae colonization through targeted bacterial killing.},    
    author  = {Cavaco CK, Patras KA, Zlamal JE, Thoman ML, Morgan EL, Sanderson SD, Doran KS.},    
    journal = {Antimicrob Agents Chemother},    
    year    = {2013},    
    doi     = {10.1128/aac.01590-13},    
    pmid    = {23979760}        
    }
    @article{lin299378,
    title   = {Viability and virulence of pneumolysin, pneumococcal surface protein A, and pneumolysin/pneumococcal surface protein A mutants in the ear.},    
    author  = {Schachern PA, Tsuprun V, Goetz S, Cureoglu S, Juhn SK, Briles DE, Paparella MM, Ferrieri P.},    
    journal = {JAMA Otolaryngol Head Neck Surg},    
    year    = {2013},    
    doi     = {10.1001/jamaoto.2013.4104},    
    pmid    = {24051749}        
    }
    @article{lin299372,
    title   = {Hyaluronic acid derived from other streptococci supports Streptococcus pneumoniae in vitro biofilm formation.},    
    author  = {Yadav MK, Chae SW, Park K, Song JJ.},    
    journal = {Biomed Res Int},    
    year    = {2013},    
    doi     = {10.1155/2013/690217},    
    pmid    = {24171169}        
    }
    @article{lin299397,
    title   = {Streptococcus pneumoniae invades erythrocytes and utilizes them to evade human innate immunity.},    
    author  = {Yamaguchi M, Terao Y, Mori-Yamaguchi Y, Domon H, Sakaue Y, Yagi T, Nishino K, Yamaguchi A, Nizet V, Kawabata S.},    
    journal = {PLoS One},    
    year    = {2013},    
    doi     = {10.1371/journal.pone.0077282},    
    pmid    = {24194877}        
    }
    @article{lin299385,
    title   = {Vaccination against Streptococcus pneumoniae using truncated derivatives of polyhistidine triad protein D.},    
    author  = {Plumptre CD, Ogunniyi AD, Paton JC.},    
    journal = {PLoS One},    
    year    = {2013},    
    doi     = {10.1371/journal.pone.0078916},    
    pmid    = {24205351}        
    }
    @article{lin299383,
    title   = {Type I interferon signaling regulates activation of the absent in melanoma 2 inflammasome during Streptococcus pneumoniae infection.},    
    author  = {Fang R, Hara H, Sakai S, Hernandez-Cuellar E, Mitsuyama M, Kawamura I, Tsuchiya K.},    
    journal = {Infect Immun},    
    year    = {2014},    
    doi     = {10.1128/iai.01572-14},    
    pmid    = {24643540}        
    }
    @article{lin299351,
    title   = {The pneumococcal polysaccharide capsule and pneumolysin differentially affect CXCL8 and IL-6 release from cells of the upper and lower respiratory tract.},    
    author  = {Kung E, Coward WR, Neill DR, Malak HA, Muhlemann K, Kadioglu A, Hilty M, Hathaway LJ.},    
    journal = {PLoS One},    
    year    = {2014},    
    doi     = {10.1371/journal.pone.0092355},    
    pmid    = {24664110}        
    }
    @article{lin299402,
    title   = {Low-dose recombinant properdin provides substantial protection against Streptococcus pneumoniae and Neisseria meningitidis infection.},    
    author  = {Ali YM, Hayat A, Saeed BM, Haleem KS, Alshamrani S, Kenawy HI, Ferreira VP, Saggu G, Buchberger A, Lachmann PJ, Sim RB, Goundis D, Andrew PW, Lynch NJ, Schwaeble WJ.},    
    journal = {Proc Natl Acad Sci U S A},    
    year    = {2014},    
    doi     = {10.1073/pnas.1401011111},    
    pmid    = {24706855}        
    }
    @article{lin299390,
    title   = {Density and duration of pneumococcal carriage is maintained by transforming growth factor beta1 and T regulatory cells.},    
    author  = {Neill DR, Coward WR, Gritzfeld JF, Richards L, Garcia-Garcia FJ, Dotor J, Gordon SB, Kadioglu A.},    
    journal = {Am J Respir Crit Care Med},    
    year    = {2014},    
    doi     = {10.1164/rccm.201401-0128oc},    
    pmid    = {24749506}        
    }
    @article{lin299392,
    title   = {Development and characterization of a long-term murine model of Streptococcus pneumoniae infection of the lower airways.},    
    author  = {Haste L, Hulland K, Bolton S, Yesilkaya H, McKechnie K, Andrew PW.},    
    journal = {Infect Immun},    
    year    = {2014},    
    doi     = {10.1128/iai.01623-14},    
    pmid    = {24866797}        
    }
    @article{lin299381,
    title   = {Respiratory syncytial virus increases the virulence of Streptococcus pneumoniae by binding to penicillin binding protein 1a. A new paradigm in respiratory infection.},    
    author  = {Smith CM, Sandrini S, Datta S, Freestone P, Shafeeq S, Radhakrishnan P, Williams G, Glenn SM, Kuipers OP, Hirst RA, Easton AJ, Andrew PW, O'Callaghan C.},    
    journal = {Am J Respir Crit Care Med},    
    year    = {2014},    
    doi     = {10.1164/rccm.201311-2110oc},    
    pmid    = {24941423}        
    }
    @article{lin299435,
    title   = {Protective role of the capsule and impact of serotype 4 switching on Streptococcus mitis.},    
    author  = {Rukke HV, Kalluru RS, Repnik U, Gerlini A, Jose RJ, Periselneris J, Marshall H, Griffiths G, Oggioni MR, Brown JS, Petersen FC.},    
    journal = {Infect Immun},    
    year    = {2014},    
    doi     = {10.1128/iai.01840-14},    
    pmid    = {24958712}        
    }
    @article{lin299412,
    title   = {A novel protein, RafX, is important for common cell wall polysaccharide biosynthesis in Streptococcus pneumoniae: implications for bacterial virulence.},    
    author  = {Wu K, Huang J, Zhang Y, Xu W, Xu H, Wang L, Cao J, Zhang X, Yin Y.},    
    journal = {J Bacteriol},    
    year    = {2014},    
    doi     = {10.1128/jb.01696-14},    
    pmid    = {25002545}        
    }
    @article{lin299371,
    title   = {Pneumococcal PspA and PspC proteins: potential vaccine candidates for experimental otitis media.},    
    author  = {Schachern PA, Tsuprun V, Ferrieri P, Briles DE, Goetz S, Cureoglu S, Paparella MM, Juhn S.},    
    journal = {Int J Pediatr Otorhinolaryngol},    
    year    = {2014},    
    doi     = {10.1016/j.ijporl.2014.06.024},    
    pmid    = {25015773}        
    }
    @article{lin299373,
    title   = {Sinefungin, a natural nucleoside analogue of S-adenosylmethionine, inhibits Streptococcus pneumoniae biofilm growth.},    
    author  = {Yadav MK, Park SW, Chae SW, Song JJ.},    
    journal = {Biomed Res Int},    
    year    = {2014},    
    doi     = {10.1155/2014/156987},    
    pmid    = {25050323}        
    }
    @article{lin299415,
    title   = {An epithelial circadian clock controls pulmonary inflammation and glucocorticoid action.},    
    author  = {Gibbs J, Ince L, Matthews L, Mei J, Bell T, Yang N, Saer B, Begley N, Poolman T, Pariollaud M, Farrow S, DeMayo F, Hussell T, Worthen GS, Ray D, Loudon A.},    
    journal = {Nat Med},    
    year    = {2014},    
    doi     = {10.1038/nm.3599},    
    pmid    = {25064128}        
    }
    @article{lin299384,
    title   = {The impact of pneumolysin on the macrophage response to Streptococcus pneumoniae is strain-dependent.},    
    author  = {Harvey RM, Hughes CE, Paton AW, Trappetti C, Tweten RK, Paton JC.},    
    journal = {PLoS One},    
    year    = {2014},    
    doi     = {10.1371/journal.pone.0103625},    
    pmid    = {25105894}        
    }
    @article{lin299386,
    title   = {The oral commensal Streptococcus mitis shows a mixed memory Th cell signature that is similar to and cross-reactive with Streptococcus pneumoniae.},    
    author  = {Engen SA, Valen Rukke H, Becattini S, Jarrossay D, Blix IJ, Petersen FC, Sallusto F, Schenck K.},    
    journal = {PLoS One},    
    year    = {2014},    
    doi     = {10.1371/journal.pone.0104306},    
    pmid    = {25119879}        
    }
    @article{lin299410,
    title   = {Pneumolysin activates macrophage lysosomal membrane permeabilization and executes apoptosis by distinct mechanisms without membrane pore formation.},    
    author  = {Bewley MA, Naughton M, Preston J, Mitchell A, Holmes A, Marriott HM, Read RC, Mitchell TJ, Whyte MK, Dockrell DH.},    
    journal = {mBio},    
    year    = {2014},    
    doi     = {10.1128/mbio.01710-14},    
    pmid    = {25293758}        
    }
    @article{lin299335,
    title   = {Mucosal immunization with the live attenuated vaccine SPY1 induces humoral and Th2-Th17-regulatory T cell cellular immunity and protects against pneumococcal infection.},    
    author  = {Xu X, Wang H, Liu Y, Wang Y, Zeng L, Wu K, Wang J, Ma F, Xu W, Yin Y, Zhang X.},    
    journal = {Infect Immun},    
    year    = {2015},    
    doi     = {10.1128/iai.02334-14},    
    pmid    = {25312946}        
    }
    @article{lin299427,
    title   = {Conserved surface accessible nucleoside ABC transporter component SP0845 is essential for pneumococcal virulence and confers protection in vivo.},    
    author  = {Saxena S, Khan N, Dehinwal R, Kumar A, Sehgal D.},    
    journal = {PLoS One},    
    year    = {2015},    
    doi     = {10.1371/journal.pone.0118154},    
    pmid    = {25689507}        
    }
    @article{lin299433,
    title   = {Co-Inactivation of GlnR and CodY Regulators Impacts Pneumococcal Cell Wall Physiology.},    
    author  = {Johnston C, Bootsma HJ, Aldridge C, Manuse S, Gisch N, Schwudke D, Hermans PW, Grangeasse C, Polard P, Vollmer W, Claverys JP.},    
    journal = {PLoS One},    
    year    = {2015},    
    doi     = {10.1371/journal.pone.0123702},    
    pmid    = {25901369}        
    }
    @article{lin299418,
    title   = {Circulating Pneumolysin Is a Potent Inducer of Cardiac Injury during Pneumococcal Infection.},    
    author  = {Alhamdi Y, Neill DR, Abrams ST, Malak HA, Yahya R, Barrett-Jolley R, Wang G, Kadioglu A, Toh CH.},    
    journal = {PLoS Pathog},    
    year    = {2015},    
    doi     = {10.1371/journal.ppat.1004836},    
    pmid    = {25973949}        
    }
    @article{lin299375,
    title   = {Exposure to welding fumes and lower airway infection with Streptococcus pneumoniae.},    
    author  = {Suri R, Periselneris J, Lanone S, Zeidler-Erdely PC, Melton G, Palmer KT, Andujar P, Antonini JM, Cohignac V, Erdely A, Jose RJ, Mudway I, Brown J, Grigg J.},    
    journal = {J Allergy Clin Immunol},    
    year    = {2016},    
    doi     = {10.1016/j.jaci.2015.06.033},    
    pmid    = {26277596}        
    }
    @article{lin299467,
    title   = {Matrikines are key regulators in modulating the amplitude of lung inflammation in acute pulmonary infection.},    
    author  = {Akthar S, Patel DF, Beale RC, Peiro T, Xu X, Gaggar A, Jackson PL, Blalock JE, Lloyd CM, Snelgrove RJ.},    
    journal = {Nat Commun},    
    year    = {2015},    
    doi     = {10.1038/ncomms9423},    
    pmid    = {26400771}        
    }
    @article{lin299389,
    title   = {The Small Molecule DAM Inhibitor, Pyrimidinedione, Disrupts Streptococcus pneumoniae Biofilm Growth In Vitro.},    
    author  = {Yadav MK, Go YY, Chae SW, Song JJ.},    
    journal = {PLoS One},    
    year    = {2015},    
    doi     = {10.1371/journal.pone.0139238},    
    pmid    = {26431532}        
    }
    @article{lin299388,
    title   = {Co-Transcriptomes of Initial Interactions In Vitro between Streptococcus Pneumoniae and Human Pleural Mesothelial Cells.},    
    author  = {Heath CJ, del Mar Cendra M, Watson A, Auger JP, Pandey A, Tighe P, Christodoulides M.},    
    journal = {PLoS One},    
    year    = {2015},    
    doi     = {10.1371/journal.pone.0142773},    
    pmid    = {26566142}        
    }
    @article{lin299411,
    title   = {The Variable Region of Pneumococcal Pathogenicity Island 1 Is Responsible for Unusually High Virulence of a Serotype 1 Isolate.},    
    author  = {Harvey RM, Trappetti C, Mahdi LK, Wang H, McAllister LJ, Scalvini A, Paton AW, Paton JC.},    
    journal = {Infect Immun},    
    year    = {2016},    
    doi     = {10.1128/iai.01454-15},    
    pmid    = {26755156}        
    }
    @article{lin299400,
    title   = {Addiction of Hypertransformable Pneumococcal Isolates to Natural Transformation for In Vivo Fitness and Virulence.},    
    author  = {Li G, Liang Z, Wang X, Yang Y, Shao Z, Li M, Ma Y, Qu F, Morrison DA, Zhang JR.},    
    journal = {Infect Immun},    
    year    = {2016},    
    doi     = {10.1128/iai.00097-16},    
    pmid    = {27068094}        
    }
    @article{lin299387,
    title   = {Generation and Improvement of Effector Function of a Novel Broadly Reactive and Protective Monoclonal Antibody against Pneumococcal Surface Protein A of Streptococcus pneumoniae.},    
    author  = {Kristian SA, Ota T, Bubeck SS, Cho R, Groff BC, Kubota T, Destito G, Martin C, Laudenslager J, Koriazova L, Tahara T, Kanda Y.},    
    journal = {PLoS One},    
    year    = {2016},    
    doi     = {10.1371/journal.pone.0154616},    
    pmid    = {27171010}        
    }
    @article{lin299364,
    title   = {Duplex Quantitative PCR Assay for Detection of Haemophilus influenzae That Distinguishes Fucose- and Protein D-Negative Strains.},    
    author  = {de Gier C, Pickering JL, Richmond PC, Thornton RB, Kirkham LA.},    
    journal = {J Clin Microbiol},    
    year    = {2016},    
    doi     = {10.1128/jcm.00982-16},    
    pmid    = {27335148}        
    }
    @article{lin299404,
    title   = {CovR Regulates Streptococcus mutans Susceptibility To Complement Immunity and Survival in Blood.},    
    author  = {Alves LA, Nomura R, Mariano FS, Harth-Chu EN, Stipp RN, Nakano K, Mattos-Graner RO.},    
    journal = {Infect Immun},    
    year    = {2016},    
    doi     = {10.1128/iai.00406-16},    
    pmid    = {27572331}        
    }
    @article{lin299356,
    title   = {Streptococcus pneumoniae disrupts pulmonary immune defence via elastase release following pneumolysin-dependent neutrophil lysis.},    
    author  = {Domon H, Oda M, Maekawa T, Nagai K, Takeda W, Terao Y.},    
    journal = {Sci Rep},    
    year    = {2016},    
    doi     = {10.1038/srep38013},    
    pmid    = {27892542}        
    }
    @article{lin299370,
    title   = {Collectin Kidney 1 Plays an Important Role in Innate Immunity against Streptococcus pneumoniae Infection.},    
    author  = {Hwang I, Mori K, Ohtani K, Matsuda Y, Roy N, Kim Y, Suzuki Y, Wakamiya N.},    
    journal = {J Innate Immun},    
    year    = {2017},    
    doi     = {10.1159/000453316},    
    pmid    = {28068663}        
    }
    @article{lin299377,
    title   = {Autoinducer 2 Signaling via the Phosphotransferase FruA Drives Galactose Utilization by Streptococcus pneumoniae, Resulting in Hypervirulence.},    
    author  = {Trappetti C, McAllister LJ, Chen A, Wang H, Paton AW, Oggioni MR, McDevitt CA, Paton JC.},    
    journal = {mBio},    
    year    = {2017},    
    doi     = {10.1128/mbio.02269-16},    
    pmid    = {28119473}        
    }
    @article{lin299391,
    title   = {Pneumococcal infection of respiratory cells exposed to welding fumes; Role of oxidative stress and HIF-1 alpha.},    
    author  = {Grigg J, Miyashita L, Suri R.},    
    journal = {PLoS One},    
    year    = {2017},    
    doi     = {10.1371/journal.pone.0173569},    
    pmid    = {28278175}        
    }
    @article{lin299354,
    title   = {Apoptosis, Toll-like, RIG-I-like and NOD-like Receptors Are Pathways Jointly Induced by Diverse Respiratory Bacterial and Viral Pathogens.},    
    author  = {Martinez I, Oliveros JC, Cuesta I, de la Barrera J, Ausina V, Casals C, de Lorenzo A, Garcia E, Garcia-Fojeda B, Garmendia J, Gonzalez-Nicolau M, Lacoma A, Menendez M, Moranta D, Nieto A, Ortin J, Perez-Gonzalez A, Prat C, Ramos-Sevillano E, Regueiro V, Rodriguez-Frandsen A, Solis D, Yuste J, Yuste J, Bengoechea JA, Melero JA.},    
    journal = {Front Microbiol},    
    year    = {2017},    
    doi     = {10.3389/fmicb.2017.00276},    
    pmid    = {28298903}        
    }
    @article{lin299348,
    title   = {Epigallocatechin gallate inhibits Streptococcus pneumoniae virulence by simultaneously targeting pneumolysin and sortase A.},    
    author  = {Song M, Teng Z, Li M, Niu X, Wang J, Deng X.},    
    journal = {J Cell Mol Med},    
    year    = {2017},    
    doi     = {10.1111/jcmm.13179},    
    pmid    = {28402019}        
    }
    @article{lin299350,
    title   = {Impaired Mitochondrial Microbicidal Responses in Chronic Obstructive Pulmonary Disease Macrophages.},    
    author  = {Bewley MA, Preston JA, Mohasin M, Marriott HM, Budd RC, Swales J, Collini P, Greaves DR, Craig RW, Brightling CE, Donnelly LE, Barnes PJ, Singh D, Shapiro SD, Whyte MKB, Dockrell DH.},    
    journal = {Am J Respir Crit Care Med},    
    year    = {2017},    
    doi     = {10.1164/rccm.201608-1714oc},    
    pmid    = {28557543}        
    }
    @article{lin299421,
    title   = {Airway microbiota signals anabolic and catabolic remodeling in the transplanted lung.},    
    author  = {Mouraux S, Bernasconi E, Pattaroni C, Koutsokera A, Aubert JD, Claustre J, Pison C, Royer PJ, Magnan A, Kessler R, Benden C, Soccal PM, Marsland BJ, Nicod LP, SysCLAD Consortium.},    
    journal = {J Allergy Clin Immunol},    
    year    = {2018},    
    doi     = {10.1016/j.jaci.2017.06.022},    
    pmid    = {28729000}        
    }
    @article{lin34936,
    title   = {A Streptococcus pneumoniae Type 2 Oligosaccharide Glycoconjugate Elicits Opsonic Antibodies and Is Protective in an Animal Model of Invasive Pneumococcal Disease.},    
    author  = {Emmadi M, Khan N, Lykke L, Reppe K, G Parameswarappa S, Lisboa MP, Wienhold SM, Witzenrath M, Pereira CL, Seeberger PH},    
    journal = {J Am Chem Soc},    
    year    = {2017},    
    doi     = {10.1021/jacs.7b07836},    
    pmid    = {28945368}        
    }
    @article{lin299359,
    title   = {Antimicrobial and Antibiofilm Effects of Human Amniotic/Chorionic Membrane Extract on <i>Streptococcus pneumoniae</i>.},    
    author  = {Yadav MK, Go YY, Kim SH, Chae SW, Song JJ.},    
    journal = {Front Microbiol},    
    year    = {2017},    
    doi     = {10.3389/fmicb.2017.01948},    
    pmid    = {29089928}        
    }
    @article{lin299327,
    title   = {<i>Streptococcus pneumoniae</i> Attenuated Strain SPY1 with an Artificial Mineral Shell Induces Humoral and Th17 Cellular Immunity and Protects Mice against Pneumococcal Infection.},    
    author  = {Zhang X, Cui J, Wu Y, Wang H, Wang J, Qiu Y, Mo Y, He Y, Zhang X, Yin Y, Xu W.},    
    journal = {Front Immunol},    
    year    = {2017},    
    doi     = {10.3389/fimmu.2017.01983},    
    pmid    = {29375585}        
    }
    @article{lin299440,
    title   = {Marine Natural Peptides: Determination of Absolute Configuration Using Liquid Chromatography Methods and Evaluation of Bioactivities.},    
    author  = {Phyo YZ, Ribeiro J, Fernandes C, Kijjoa A, Pinto MMM.},    
    journal = {Molecules},    
    year    = {2018},    
    doi     = {10.3390/molecules23020306},    
    pmid    = {29385101}        
    }
    @article{lin299374,
    title   = {E-cigarette vapour enhances pneumococcal adherence to airway epithelial cells.},    
    author  = {Miyashita L, Suri R, Dearing E, Mudway I, Dove RE, Neill DR, Van Zyl-Smit R, Kadioglu A, Grigg J.},    
    journal = {Eur Respir J},    
    year    = {2018},    
    doi     = {10.1183/13993003.01592-2017},    
    pmid    = {29437942}        
    }
    @article{lin299422,
    title   = {Designer cells programming quorum-sensing interference with microbes.},    
    author  = {Sedlmayer F, Hell D, Muller M, Auslander D, Fussenegger M.},    
    journal = {Nat Commun},    
    year    = {2018},    
    doi     = {10.1038/s41467-018-04223-7},    
    pmid    = {29739943}        
    }
    @article{lin299342,
    title   = {The LuxS/AI-2 Quorum-Sensing System of <i>Streptococcus pneumoniae</i> Is Required to Cause Disease, and to Regulate Virulence- and Metabolism-Related Genes in a Rat Model of Middle Ear Infection.},    
    author  = {Yadav MK, Vidal JE, Go YY, Kim SH, Chae SW, Song JJ.},    
    journal = {Front Cell Infect Microbiol},    
    year    = {2018},    
    doi     = {10.3389/fcimb.2018.00138},    
    pmid    = {29780750}        
    }
    @article{lin299366,
    title   = {A novel extracellular vesicle-associated endodeoxyribonuclease helps Streptococcus pneumoniae evade neutrophil extracellular traps and is required for full virulence.},    
    author  = {Jhelum H, Sori H, Sehgal D.},    
    journal = {Sci Rep},    
    year    = {2018},    
    doi     = {10.1038/s41598-018-25865-z},    
    pmid    = {29789571}        
    }
    @article{lin299361,
    title   = {Neutrophil Elastase Subverts the Immune Response by Cleaving Toll-Like Receptors and Cytokines in Pneumococcal Pneumonia.},    
    author  = {Domon H, Nagai K, Maekawa T, Oda M, Yonezawa D, Takeda W, Hiyoshi T, Tamura H, Yamaguchi M, Kawabata S, Terao Y.},    
    journal = {Front Immunol},    
    year    = {2018},    
    doi     = {10.3389/fimmu.2018.00732},    
    pmid    = {29922273}        
    }
    @article{lin299312,
    title   = {Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39.},    
    author  = {Slager J, Aprianto R, Veening JW.},    
    journal = {Nucleic Acids Res},    
    year    = {2018},    
    doi     = {10.1093/nar/gky725},    
    pmid    = {30107613}        
    }
    @article{lin299376,
    title   = {Protective Regulatory T Cell Immune Response Induced by Intranasal Immunization With the Live-Attenuated Pneumococcal Vaccine SPY1 <i>via</i> the Transforming Growth Factor-beta1-Smad2/3 Pathway.},    
    author  = {Liao H, Peng X, Gan L, Feng J, Gao Y, Yang S, Hu X, Zhang L, Yin Y, Wang H, Xu X.},    
    journal = {Front Immunol},    
    year    = {2018},    
    doi     = {10.3389/fimmu.2018.01754},    
    pmid    = {30116243}        
    }
    @article{lin299338,
    title   = {Mechanism of Macrolide-Induced Inhibition of Pneumolysin Release Involves Impairment of Autolysin Release in Macrolide-Resistant Streptococcus pneumoniae.},    
    author  = {Domon H, Maekawa T, Yonezawa D, Nagai K, Oda M, Yanagihara K, Terao Y.},    
    journal = {Antimicrob Agents Chemother},    
    year    = {2018},    
    doi     = {10.1128/aac.00161-18},    
    pmid    = {30181369}        
    }
    @article{lin299341,
    title   = {The Pneumococcal Surface Proteins PspA and PspC Sequester Host C4-Binding Protein To Inactivate Complement C4b on the Bacterial Surface.},    
    author  = {Haleem KS, Ali YM, Yesilkaya H, Kohler T, Hammerschmidt S, Andrew PW, Schwaeble WJ, Lynch NJ.},    
    journal = {Infect Immun},    
    year    = {2019},    
    doi     = {10.1128/iai.00742-18},    
    pmid    = {30323030}        
    }
    @article{lin299379,
    title   = {Pneumolysin binds to the mannose receptor C type 1 (MRC-1) leading to anti-inflammatory responses and enhanced pneumococcal survival.},    
    author  = {Subramanian K, Neill DR, Malak HA, Spelmink L, Khandaker S, Dalla Libera Marchiori G, Dearing E, Kirby A, Yang M, Achour A, Nilvebrant J, Nygren PA, Plant L, Kadioglu A, Henriques-Normark B.},    
    journal = {Nat Microbiol},    
    year    = {2019},    
    doi     = {10.1038/s41564-018-0280-x},    
    pmid    = {30420782}        
    }
    @article{lin299343,
    title   = {TLR4 deficiency reduces pulmonary resistance to Streptococcus pneumoniae in gut microbiota-disrupted mice.},    
    author  = {Wang H, Lian P, Niu X, Zhao L, Mu X, Feng B, Li J, Liang Z, Qiao J.},    
    journal = {PLoS One},    
    year    = {2018},    
    doi     = {10.1371/journal.pone.0209183},    
    pmid    = {30562386}        
    }
    @article{lin299365,
    title   = {PCV7- and PCV10-Vaccinated Otitis-Prone Children in New Zealand Have Similar Pneumococcal and <i>Haemophilus influenzae</i> Densities in Their Nasopharynx and Middle Ear.},    
    author  = {de Gier C, Granland CM, Pickering JL, Walls T, Bhuiyan M, Mills N, Richmond PC, Best EJ, Thornton RB, Kirkham LS.},    
    journal = {Vaccines (Basel)},    
    year    = {2019},    
    doi     = {10.3390/vaccines7010014},    
    pmid    = {30708945}        
    }
    @article{lin299355,
    title   = {Redefining the Small Regulatory RNA Transcriptome in Streptococcus pneumoniae Serotype 2 Strain D39.},    
    author  = {Sinha D, Zimmer K, Cameron TA, Rusch DB, Winkler ME, De Lay NR.},    
    journal = {J Bacteriol},    
    year    = {2019},    
    doi     = {10.1128/jb.00764-18},    
    pmid    = {30833353}        
    }
    @article{lin299396,
    title   = {Conformational and dynamic plasticity in substrate-binding proteins underlies selective transport in ABC importers.},    
    author  = {de Boer M, Gouridis G, Vietrov R, Begg SL, Schuurman-Wolters GK, Husada F, Eleftheriadis N, Poolman B, McDevitt CA, Cordes T.},    
    journal = {Elife},    
    year    = {2019},    
    doi     = {10.7554/elife.44652},    
    pmid    = {30900991}        
    }
    @article{lin299333,
    title   = {Mitochondrial DNA Leakage Caused by <i>Streptococcus pneumoniae</i> Hydrogen Peroxide Promotes Type I IFN Expression in Lung Cells.},    
    author  = {Gao Y, Xu W, Dou X, Wang H, Zhang X, Yang S, Liao H, Hu X, Wang H.},    
    journal = {Front Microbiol},    
    year    = {2019},    
    doi     = {10.3389/fmicb.2019.00630},    
    pmid    = {30984149}        
    }
    @article{lin299395,
    title   = {Photocatalytic Protein Damage by Silver Nanoparticles Circumvents Bacterial Stress Response and Multidrug Resistance.},    
    author  = {Shi T, Wei Q, Wang Z, Zhang G, Sun X, He QY.},    
    journal = {mSphere},    
    year    = {2019},    
    doi     = {10.1128/msphere.00175-19},    
    pmid    = {31043515}        
    }
    @article{lin299346,
    title   = {<i>Streptococcus pneumoniae</i> inhibits purinergic signaling and promotes purinergic receptor P2Y<sub>2</sub> internalization in alveolar epithelial cells.},    
    author  = {Olotu C, Lehmensiek F, Koch B, Kiefmann M, Riegel AK, Hammerschmidt S, Kiefmann R.},    
    journal = {J Biol Chem},    
    year    = {2019},    
    doi     = {10.1074/jbc.ra118.007236},    
    pmid    = {31289122}        
    }
    @article{lin299362,
    title   = {Role of Pneumococcal NanA Neuraminidase Activity in Peripheral Blood.},    
    author  = {Syed S, Hakala P, Singh AK, Lapatto HAK, King SJ, Meri S, Jokiranta TS, Haapasalo K.},    
    journal = {Front Cell Infect Microbiol},    
    year    = {2019},    
    doi     = {10.3389/fcimb.2019.00218},    
    pmid    = {31297339}        
    }
    @article{lin299407,
    title   = {Extreme Environment <i>Streptomyces</i>: Potential Sources for New Antibacterial and Anticancer Drug Leads?},    
    author  = {Sivalingam P, Hong K, Pote J, Prabakar K, Prabakar K.},    
    journal = {Int J Microbiol},    
    year    = {2019},    
    doi     = {10.1155/2019/5283948},    
    pmid    = {31354829}        
    }
    @article{lin299368,
    title   = {In vivo proteomics identifies the competence regulon and AliB oligopeptide transporter as pathogenic factors in pneumococcal meningitis.},    
    author  = {Schmidt F, Kakar N, Meyer TC, Depke M, Masouris I, Burchhardt G, Gomez-Mejia A, Dhople V, Havarstein LS, Sun Z, Moritz RL, Volker U, Koedel U, Hammerschmidt S.},    
    journal = {PLoS Pathog},    
    year    = {2019},    
    doi     = {10.1371/journal.ppat.1007987},    
    pmid    = {31356624}        
    }
    @article{lin299347,
    title   = {The Tyrosine-Autokinase UbK Is Required for Proper Cell Growth and Cell Morphology of <i>Streptococcus pneumoniae</i>.},    
    author  = {Pelletier A, Freton C, Gallay C, Trouve J, Cluzel C, Franz-Wachtel M, Macek B, Jault JM, Grangeasse C, Guiral S.},    
    journal = {Front Microbiol},    
    year    = {2019},    
    doi     = {10.3389/fmicb.2019.01942},    
    pmid    = {31551943}        
    }
    @article{lin299357,
    title   = {Peptidoglycan Recognition Protein 4 Limits Bacterial Clearance and Inflammation in Lungs by Control of the Gut Microbiota.},    
    author  = {Dabrowski AN, Shrivastav A, Conrad C, Komma K, Weigel M, Dietert K, Gruber AD, Bertrams W, Wilhelm J, Schmeck B, Reppe K, N'Guessan PD, Aly S, Suttorp N, Hain T, Zahlten J.},    
    journal = {Front Immunol},    
    year    = {2019},    
    doi     = {10.3389/fimmu.2019.02106},    
    pmid    = {31616404}        
    }
    @article{lin299367,
    title   = {The clock gene <i>Bmal1</i> inhibits macrophage motility, phagocytosis, and impairs defense against pneumonia.},    
    author  = {Kitchen GB, Cunningham PS, Poolman TM, Iqbal M, Maidstone R, Baxter M, Bagnall J, Begley N, Saer B, Hussell T, Matthews LC, Dockrell DH, Durrington HJ, Gibbs JE, Blaikley JF, Loudon AS, Ray DW.},    
    journal = {Proc Natl Acad Sci U S A},    
    year    = {2020},    
    doi     = {10.1073/pnas.1915932117},    
    pmid    = {31900362}        
    }
    @article{lin299360,
    title   = {Exposure to diesel exhaust particles increases susceptibility to invasive pneumococcal disease.},    
    author  = {Shears RK, Jacques LC, Naylor G, Miyashita L, Khandaker S, Lebre F, Lavelle EC, Grigg J, French N, Neill DR, Kadioglu A.},    
    journal = {J Allergy Clin Immunol},    
    year    = {2020},    
    doi     = {10.1016/j.jaci.2019.11.039},    
    pmid    = {31983527}        
    }
    @article{lin34925,
    title   = {The roles of genes associated with regulation, transportation, and macrocyclization in desotamide biosynthesis in Streptomyces scopuliridis SCSIO ZJ46.},    
    author  = {Ding W, Dong Y, Ju J, Li Q},    
    journal = {Appl Microbiol Biotechnol},    
    year    = {2020},    
    doi     = {10.1007/s00253-020-10414-4},    
    pmid    = {32002605}        
    }
    @article{lin299325,
    title   = {<i>Streptococcus pneumoniae</i> PepO promotes host anti-infection defense via autophagy in a Toll-like receptor 2/4 dependent manner.},    
    author  = {Shu Z, Yuan J, Wang H, Zhang J, Li S, Zhang H, Liu Y, Yin Y, Zhang X.},    
    journal = {Virulence},    
    year    = {2020},    
    doi     = {10.1080/21505594.2020.1739411},    
    pmid    = {32172666}        
    }
    @article{lin299331,
    title   = {Proteomic Adaptation of <i>Streptococcus pneumoniae</i> to the Human Antimicrobial Peptide LL-37.},    
    author  = {Mucke PA, Maass S, Kohler TP, Hammerschmidt S, Becher D.},    
    journal = {Microorganisms},    
    year    = {2020},    
    doi     = {10.3390/microorganisms8030413},    
    pmid    = {32183275}        
    }
    @article{lin299319,
    title   = {Antimicrobial, Cytotoxic, and Antioxidant Potential of a Novel Flavone "6,7,4'-Trimethyl Flavone" Isolated from <i>Wulfenia amherstiana</i>.},    
    author  = {Kakar M, Kakar M, Amin MU, Alghamdi S, Sahibzada MUK, Ahmad N, Ullah N.},    
    journal = {Evid Based Complement Alternat Med},    
    year    = {2020},    
    doi     = {10.1155/2020/3903682},    
    pmid    = {32190082}        
    }
    @article{lin299324,
    title   = {Urban Particles Elevated Streptococcus pneumoniae Biofilms, Colonization of the Human Middle Ear Epithelial Cells, Mouse Nasopharynx and Transit to the Middle Ear and Lungs.},    
    author  = {Yadav MK, Go YY, Jun I, Chae SW, Song JJ.},    
    journal = {Sci Rep},    
    year    = {2020},    
    doi     = {10.1038/s41598-020-62846-7},    
    pmid    = {32249803}        
    }
    @article{lin299330,
    title   = {The B-cell inhibitory receptor CD22 is a major factor in host resistance to Streptococcus pneumoniae infection.},    
    author  = {Fernandes VE, Ercoli G, Benard A, Brandl C, Fahnenstiel H, Muller-Winkler J, Weber GF, Denny P, Nitschke L, Andrew PW.},    
    journal = {PLoS Pathog},    
    year    = {2020},    
    doi     = {10.1371/journal.ppat.1008464},    
    pmid    = {32324805}        
    }
    @article{lin299337,
    title   = {Disruption of the <i>cpsE</i> and <i>endA</i> Genes Attenuates <i>Streptococcus pneumoniae</i> Virulence: Towards the Development of a Live Attenuated Vaccine Candidate.},    
    author  = {Amonov M, Simbak N, Wan Hassan WMR, Ismail S, A Rahman NI, Clarke SC, Yeo CC.},    
    journal = {Vaccines (Basel)},    
    year    = {2020},    
    doi     = {10.3390/vaccines8020187},    
    pmid    = {32326482}        
    }
    @article{lin299406,
    title   = {HIF-1alpha is involved in blood-brain barrier dysfunction and paracellular migration of bacteria in pneumococcal meningitis.},    
    author  = {Devraj G, Guerit S, Seele J, Spitzer D, Macas J, Khel MI, Heidemann R, Braczynski AK, Ballhorn W, Gunther S, Ogunshola OO, Mittelbronn M, Kodel U, Monoranu CM, Plate KH, Hammerschmidt S, Nau R, Devraj K, Kempf VAJ.},    
    journal = {Acta Neuropathol},    
    year    = {2020},    
    doi     = {10.1007/s00401-020-02174-2},    
    pmid    = {32529267}        
    }
    @article{lin299318,
    title   = {Cortex <i>Cercis chinensis</i> Granules Attenuate <i>Streptococcus pneumoniae</i> Virulence by Targeting Pneumolysin.},    
    author  = {Xu Y, Wang Y, Guo Y, Wei L, Ding L, Wang Z, Sun L.},    
    journal = {Evid Based Complement Alternat Med},    
    year    = {2020},    
    doi     = {10.1155/2020/8537026},    
    pmid    = {32617112}        
    }
    @article{lin299322,
    title   = {Site-Specific Mutations of GalR Affect Galactose Metabolism in Streptococcus pneumoniae.},    
    author  = {McLean KT, Tikhomirova A, Brazel EB, Legendre S, Haasbroek G, Minhas V, Paton JC, Trappetti C.},    
    journal = {J Bacteriol},    
    year    = {2020},    
    doi     = {10.1128/jb.00180-20},    
    pmid    = {33046563}        
    }
    @article{lin299323,
    title   = {Targeting <i>Streptococcus pneumoniae</i> UDP-glucose pyrophosphorylase (UGPase): in vitro validation of a putative inhibitor.},    
    author  = {Sharma M, Sharma S, Ray P, Chakraborti A.},    
    journal = {Drug Target Insights},    
    year    = {2020},    
    doi     = {10.33393/dti.2020.2103},    
    pmid    = {33132696}        
    }
    @article{lin299313,
    title   = {Proteomic Adaptation of <i>Streptococcus pneumoniae</i> to the Antimicrobial Peptide Human Beta Defensin 3 (hBD3) in Comparison to Other Cell Surface Stresses.},    
    author  = {Mucke PA, Ostrzinski A, Hammerschmidt S, Maass S, Becher D.},    
    journal = {Microorganisms},    
    year    = {2020},    
    doi     = {10.3390/microorganisms8111697},    
    pmid    = {33143252}        
    }
    @article{lin299353,
    title   = {Lower Density and Shorter Duration of Nasopharyngeal Carriage by Pneumococcal Serotype 1 (ST217) May Explain Its Increased Invasiveness over Other Serotypes.},    
    author  = {Bricio-Moreno L, Chaguza C, Yahya R, Shears RK, Cornick JE, Hokamp K, Yang M, Neill DR, French N, Hinton JCD, Everett DB, Kadioglu A.},    
    journal = {mBio},    
    year    = {2020},    
    doi     = {10.1128/mbio.00814-20},    
    pmid    = {33293378}        
    }
    @article{lin299328,
    title   = {Evidence of TCM Theory in Treating the Same Disease with Different Methods: Treatment of Pneumonia with <i>Ephedra sinica</i> and <i>Scutellariae Radix</i> as an Example.},    
    author  = {Sun L, Wang D, Xu Y, Qi W, Wang Y.},    
    journal = {Evid Based Complement Alternat Med},    
    year    = {2020},    
    doi     = {10.1155/2020/8873371},    
    pmid    = {33354223}        
    }
    @article{lin299339,
    title   = {Pneumococcal Colonization and Virulence Factors Identified Via Experimental Evolution in Infection Models.},    
    author  = {Green AE, Howarth D, Chaguza C, Echlin H, Langendonk RF, Munro C, Barton TE, Hinton JCD, Bentley SD, Rosch JW, Neill DR.},    
    journal = {Mol Biol Evol},    
    year    = {2021},    
    doi     = {10.1093/molbev/msab018},    
    pmid    = {33502519}        
    }
    @article{lin299329,
    title   = {A Triple-challenge Mouse Model of Allergic Airway Disease, Primary Influenza Infection, and Secondary Bacterial Infection.},    
    author  = {Roberts S, Williams CM, Roy S, Furuya Y.},    
    journal = {Bio Protoc},    
    year    = {2020},    
    doi     = {10.21769/bioprotoc.3583},    
    pmid    = {33659553}        
    }
    @article{lin299311,
    title   = {Increased Pulmonary Pneumococcal Clearance after Resolution of H9N2 Avian Influenza Virus Infection in Mice.},    
    author  = {Li J, Wang H, Lian P, Bai Y, Zhang Z, Zhao L, Xu T, Qiao J.},    
    journal = {Infect Immun},    
    year    = {2021},    
    doi     = {10.1128/iai.00062-21},    
    pmid    = {33722928}        
    }
    @article{lin299316,
    title   = {Intestinal helminth co-infection is an unrecognised risk factor for increased pneumococcal carriage density and invasive disease.},    
    author  = {Law AE, Shears RK, Lopez Rodas AA, Grencis RK, Cooper PJ, Neill DR, Kadioglu A.},    
    journal = {Sci Rep},    
    year    = {2021},    
    doi     = {10.1038/s41598-021-86508-4},    
    pmid    = {33772094}        
    }
    @article{lin299340,
    title   = {Synthetic Analogs of <i>Streptococcus pneumoniae</i> Capsular Polysaccharides and Immunogenic Activities of Glycoconjugates.},    
    author  = {Gening ML, Kurbatova EA, Nifantiev NE.},    
    journal = {Russ J Bioorg Chem},    
    year    = {2021},    
    doi     = {10.1134/s1068162021010076},    
    pmid    = {33776393}        
    }
    @article{lin299345,
    title   = {Novel Virulence Role of Pneumococcal NanA in Host Inflammation and Cell Death Through the Activation of Inflammasome and the Caspase Pathway.},    
    author  = {Tseng YW, Chang CC, Chang YC.},    
    journal = {Front Cell Infect Microbiol},    
    year    = {2021},    
    doi     = {10.3389/fcimb.2021.613195},    
    pmid    = {33777832}        
    }
    @article{lin299382,
    title   = {A prevalent and culturable microbiota links ecological balance to clinical stability of the human lung after transplantation.},    
    author  = {Das S, Bernasconi E, Koutsokera A, Wurlod DA, Tripathi V, Bonilla-Rosso G, Aubert JD, Derkenne MF, Mercier L, Pattaroni C, Rapin A, von Garnier C, Marsland BJ, Engel P, Nicod LP.},    
    journal = {Nat Commun},    
    year    = {2021},    
    doi     = {10.1038/s41467-021-22344-4},    
    pmid    = {33837203}        
    }
    @article{lin299332,
    title   = {Characterization of the Anti-Inflammatory Capacity of IL-10-Producing Neutrophils in Response to <i>Streptococcus pneumoniae</i> Infection.},    
    author  = {Gonzalez LA, Melo-Gonzalez F, Sebastian VP, Vallejos OP, Noguera LP, Suazo ID, Schultz BM, Manosalva AH, Penaloza HF, Soto JA, Parker D, Riedel CA, Gonzalez PA, Kalergis AM, Bueno SM.},    
    journal = {Front Immunol},    
    year    = {2021},    
    doi     = {10.3389/fimmu.2021.638917},    
    pmid    = {33995357}        
    }
    @article{lin299380,
    title   = {Antimicrobial Activity of Human Fetal Membranes: From Biological Function to Clinical Use.},    
    author  = {Ramuta TZ, Sket T, Starcic Erjavec M, Kreft ME.},    
    journal = {Front Bioeng Biotechnol},    
    year    = {2021},    
    doi     = {10.3389/fbioe.2021.691522},    
    pmid    = {34136474}        
    }
    @article{lin299336,
    title   = {The MpsAB Bicarbonate Transporter Is Superior to Carbonic Anhydrase in Biofilm-Forming Bacteria with Limited CO<sub>2</sub> Diffusion.},    
    author  = {Fan SH, Matsuo M, Huang L, Tribelli PM, Gotz F.},    
    journal = {Microbiol Spectr},    
    year    = {2021},    
    doi     = {10.1128/spectrum.00305-21},    
    pmid    = {34287032}        
    }
    @article{lin299369,
    title   = {CcrZ is a pneumococcal spatiotemporal cell cycle regulator that interacts with FtsZ and controls DNA replication by modulating the activity of DnaA.},    
    author  = {Gallay C, Sanselicio S, Anderson ME, Soh YM, Liu X, Stamsas GA, Pelliciari S, van Raaphorst R, Denereaz J, Kjos M, Murray H, Gruber S, Grossman AD, Veening JW.},    
    journal = {Nat Microbiol},    
    year    = {2021},    
    doi     = {10.1038/s41564-021-00949-1},    
    pmid    = {34373624}        
    }
    @article{lin299320,
    title   = {Resistance of Streptococcus pneumoniae to Hypothiocyanous Acid Generated by Host Peroxidases.},    
    author  = {Shearer HL, Kaldor CD, Hua H, Kettle AJ, Parker HA, Hampton MB.},    
    journal = {Infect Immun},    
    year    = {2022},    
    doi     = {10.1128/iai.00530-21},    
    pmid    = {35156851}        
    }
    @article{lin299315,
    title   = {Comparative Metabolic Pathways Analysis and Subtractive Genomics Profiling to Prioritize Potential Drug Targets Against <i>Streptococcus pneumoniae</i>.},    
    author  = {Khan K, Jalal K, Khan A, Al-Harrasi A, Uddin R.},    
    journal = {Front Microbiol},    
    year    = {2021},    
    doi     = {10.3389/fmicb.2021.796363},    
    pmid    = {35222301}        
    }
    @article{lin299300,
    title   = {Antimicrobial Susceptibility Pattern and Serotype Distribution of Streptococcus pneumoniae Isolates From a Hospital-Based Study in Chandigarh, North India.},    
    author  = {Sharma S, Sharma M, Ray P, Chakraborti A.},    
    journal = {Cureus},    
    year    = {2022},    
    doi     = {10.7759/cureus.21437},    
    pmid    = {35223224}        
    }
    @article{lin299321,
    title   = {Underground railway particulate matter and susceptibility to pneumococcal infection.},    
    author  = {Miyashita L, Shears R, Foley G, Semple S, Kadioglu A, Grigg J.},    
    journal = {EBioMedicine},    
    year    = {2022},    
    doi     = {10.1016/j.ebiom.2022.104063},    
    pmid    = {35598440}        
    }
    @article{lin299352,
    title   = {Synthetic Glycans to Improve Current Glycoconjugate Vaccines and Fight Antimicrobial Resistance.},    
    author  = {Del Bino L, Osterlid KE, Wu DY, Nonne F, Romano MR, Codee J, Adamo R.},    
    journal = {Chem Rev},    
    year    = {2022},    
    doi     = {10.1021/acs.chemrev.2c00021},    
    pmid    = {35608633}        
    }
    @article{lin299363,
    title   = {Host protease activity classifies pneumonia etiology.},    
    author  = {Anahtar M, Chan LW, Ko H, Rao A, Soleimany AP, Khatri P, Bhatia SN.},    
    journal = {Proc Natl Acad Sci U S A},    
    year    = {2022},    
    doi     = {10.1073/pnas.2121778119},    
    pmid    = {35696579}        
    }
    @article{lin299317,
    title   = {Procoagulant Activity of Blood and Microvesicles Is Disturbed by Pneumococcal Pneumolysin, Which Interacts with Coagulation Factors.},    
    author  = {Oehmcke-Hecht S, Maletzki C, Surabhi S, Siemens N, Khaimov V, John LM, Peter SM, Hammerschmidt S, Kreikemeyer B.},    
    journal = {J Innate Immun},    
    year    = {2023},    
    doi     = {10.1159/000525479},    
    pmid    = {35843205}        
    }
    @article{lin299314,
    title   = {Mycoplasma pneumoniae Compared to Streptococcus pneumoniae Avoids Induction of Proinflammatory Epithelial Cell Responses despite Robustly Inducing TLR2 Signaling.},    
    author  = {de Groot RCA, Zhu H, Hoogenboezem T, de Bruijn ACJM, Eenjes E, 't Jong AEJ, Belo AI, Estevao SC, Bajramovic JJ, Rottier RJ, Kool M, van Rossum AMC, Unger WWJ.},    
    journal = {Infect Immun},    
    year    = {2022},    
    doi     = {10.1128/iai.00129-22},    
    pmid    = {35862703}        
    }
    @article{lin299304,
    title   = {Streptococcus pneumoniae Rapidly Translocate from the Nasopharynx through the Cribriform Plate to Invade the Outer Meninges.},    
    author  = {Audshasai T, Coles JA, Panagiotou S, Khandaker S, Scales HE, Kjos M, Baltazar M, Vignau J, Brewer JM, Kadioglu A, Yang M.},    
    journal = {mBio},    
    year    = {2022},    
    doi     = {10.1128/mbio.01024-22},    
    pmid    = {35924840}        
    }
    @article{lin299307,
    title   = {A newly identified flavoprotein disulfide reductase Har protects Streptococcus pneumoniae against hypothiocyanous acid.},    
    author  = {Shearer HL, Pace PE, Paton JC, Hampton MB, Dickerhof N.},    
    journal = {J Biol Chem},    
    year    = {2022},    
    doi     = {10.1016/j.jbc.2022.102359},    
    pmid    = {35952759}        
    }
    @article{lin299301,
    title   = {Corilagin: A Novel Antivirulence Strategy to Alleviate <i>Streptococcus pneumoniae</i> Infection by Diminishing Pneumolysin Oligomers.},    
    author  = {Sheng Q, Hou X, Wang N, Liu M, Zhu H, Deng X, Liang X, Chi G.},    
    journal = {Molecules},    
    year    = {2022},    
    doi     = {10.3390/molecules27165063},    
    pmid    = {36014299}        
    }
    @article{lin299293,
    title   = {Therapeutic potential of kaempferol on Streptococcus pneumoniae infection.},    
    author  = {Xu L, Fang J, Ou D, Xu J, Deng X, Chi G, Feng H, Wang J.},    
    journal = {Microbes Infect},    
    year    = {2023},    
    doi     = {10.1016/j.micinf.2022.105058},    
    pmid    = {36216303}        
    }
    @article{lin299309,
    title   = {A Mouse Model for the Transition of Streptococcus pneumoniae from Colonizer to Pathogen upon Viral Co-Infection Recapitulates Age-Exacerbated Illness.},    
    author  = {Lenhard A, Joma BH, Siwapornchai N, Hakansson AP, Leong JM, Bou Ghanem EN.},    
    journal = {J Vis Exp},    
    year    = {2022},    
    doi     = {10.3791/64419},    
    pmid    = {36279528}        
    }
    @article{lin299305,
    title   = {Antimicrobial Activity of Peptide-Coupled Antisense Peptide Nucleic Acids in Streptococcus pneumoniae.},    
    author  = {Barkowsky G, Abt C, Pohner I, Bieda A, Hammerschmidt S, Jacob A, Kreikemeyer B, Patenge N.},    
    journal = {Microbiol Spectr},    
    year    = {2022},    
    doi     = {10.1128/spectrum.00497-22},    
    pmid    = {36321914}        
    }
    @article{lin299310,
    title   = {Antibiotic Tolerance Indicative of Persistence Is Pervasive among Clinical Streptococcus pneumoniae Isolates and Shows Strong Condition Dependence.},    
    author  = {Geerts N, De Vooght L, Passaris I, Delputte P, Van den Bergh B, Cos P.},    
    journal = {Microbiol Spectr},    
    year    = {2022},    
    doi     = {10.1128/spectrum.02701-22},    
    pmid    = {36374111}        
    }
    @article{lin299326,
    title   = {Pharmacological and analytical aspects of alkannin/shikonin and their derivatives: An update from 2008 to 2022.},    
    author  = {Kaur K, Sharma R, Singh A, Attri S, Arora S, Kaur S, Bedi N.},    
    journal = {Chin Herb Med},    
    year    = {2022},    
    doi     = {10.1016/j.chmed.2022.08.001},    
    pmid    = {36405061}        
    }
    @article{lin299299,
    title   = {Wogonin attenuates the pathogenicity of Streptococcus pneumoniae by double-target inhibition of Pneumolysin and Sortase A.},    
    author  = {Gu K, Ding L, Wang Z, Sun Y, Sun X, Yang W, Sun H, Tian Y, Wang Z, Sun L.},    
    journal = {J Cell Mol Med},    
    year    = {2023},    
    doi     = {10.1111/jcmm.17684},    
    pmid    = {36747468}        
    }
    @article{lin299306,
    title   = {The association between serum complement C3a and severity in patients with community-acquired pneumonia.},    
    author  = {Xu Z, Hou XF, Feng CM, Zheng L, Xu DX, Zhao H, Fu L.},    
    journal = {Front Immunol},    
    year    = {2023},    
    doi     = {10.3389/fimmu.2023.1034233},    
    pmid    = {36776834}        
    }
    @article{lin299334,
    title   = {Caspase-8 inhibition improves the outcome of bacterial infections in mice by promoting neutrophil activation.},    
    author  = {Lentini G, Fama A, De Gaetano GV, Coppolino F, Mahjoub AK, Ryan L, Lien E, Espevik T, Beninati C, Teti G.},    
    journal = {Cell Rep Med},    
    year    = {2023},    
    doi     = {10.1016/j.xcrm.2023.101098},    
    pmid    = {37390829}        
    }
    @article{lin299303,
    title   = {IL-27 mediates immune response of pneumococcal vaccine SPY1 through Th17 and memory CD4<sup>+</sup>T cells.},    
    author  = {Zhang Y, Gao S, Yao S, Weng D, Wang Y, Huang Q, Zhang X, Wang H, Xu W.},    
    journal = {iScience},    
    year    = {2023},    
    doi     = {10.1016/j.isci.2023.107464},    
    pmid    = {37588169}        
    }
    @article{lin299292,
    title   = {<i>In vitro</i> antibacterial activity of dinuclear thiolato-bridged ruthenium(II)-arene compounds.},    
    author  = {Bugnon Q, Melendez C, Desiatkina O, Fayolles de Chaptes L, Holzer I, Paunescu E, Hilty M, Furrer J.},    
    journal = {Microbiol Spectr},    
    year    = {2023},    
    doi     = {10.1128/spectrum.00954-23},    
    pmid    = {37815336}        
    }
    @article{lin299308,
    title   = {<i>hsdS<sub>A</sub></i> regulated extracellular vesicle-associated PLY to protect <i>Streptococcus pneumoniae</i> from macrophage killing via LAPosomes.},    
    author  = {Wang L, Liu M, Qi Y, Wang J, Shi Q, Xie X, Zhou C, Ma L.},    
    journal = {Microbiol Spectr},    
    year    = {2024},    
    doi     = {10.1128/spectrum.00995-23},    
    pmid    = {38018988}        
    }
    @article{lin299296,
    title   = {Combining antibiotic with anti-TLR2/TLR13 therapy prevents brain pathology in pneumococcal meningitis.},    
    author  = {Dyckhoff-Shen S, Masouris I, Islam H, Hammerschmidt S, Angele B, Marathe V, Buer J, Volk S, Pfister HW, Klein M, Koedel U, Kirschning CJ.},    
    journal = {JCI Insight},    
    year    = {2024},    
    doi     = {10.1172/jci.insight.165737},    
    pmid    = {38358825}        
    }
    @article{lin299294,
    title   = {Enhancing explainable SARS-CoV-2 vaccine development leveraging bee colony optimised Bi-LSTM, Bi-GRU models and bioinformatic analysis.},    
    author  = {Ozsahin DU, Ameen ZS, Hassan AS, Mubarak AS.},    
    journal = {Sci Rep},    
    year    = {2024},    
    doi     = {10.1038/s41598-024-55762-7},    
    pmid    = {38509174}        
    }
    @article{lin299302,
    title   = {AMP-Coated TiO<sub>2</sub> Doped ZnO Nanomaterials Enhanced Antimicrobial Activity and Efficacy in Otitis Media Treatment by Elevating Hydroxyl Radical Levels.},    
    author  = {Bai Q, Zhang Y, Cai R, Wu H, Fu H, Zhou X, Chai J, Teng X, Liu T.},    
    journal = {Int J Nanomedicine},    
    year    = {2024},    
    doi     = {10.2147/ijn.s449888},    
    pmid    = {38559446}        
    }
    @article{lin299297,
    title   = {Hydrogen peroxide is responsible for the cytotoxic effects of Streptococcus pneumoniae on primary microglia in the absence of pneumolysin.},    
    author  = {Jennert F, Schaaf D, Nau R, Kohler TP, Hammerschmidt S, Hausler D, Valentin-Weigand P, Seele J.},    
    journal = {J Innate Immun},    
    year    = {2024},    
    doi     = {10.1159/000536514},    
    pmid    = {38569474}        
    }
    @article{lin299298,
    title   = {GpsB Coordinates StkP Signaling as a PASTA Kinase Adaptor in Streptococcus pneumoniae Cell Division.},    
    author  = {Stauberova V, Kubesa B, Joseph M, Benedet M, Furlan B, Buriankova K, Ulrych A, Kupcik R, Vomastek T, Massidda O, Tsui HT, Winkler ME, Branny P, Doubravova L.},    
    journal = {J Mol Biol},    
    year    = {2024},    
    doi     = {10.1016/j.jmb.2024.168797},    
    pmid    = {39303764}        
    }
    @article{lin299291,
    title   = {PneumoBrowse 2: an integrated visual platform for curated genome annotation and multiomics data analysis of Streptococcus pneumoniae.},    
    author  = {Janssen AB, Gibson PS, Bravo AM, de Bakker V, Slager J, Veening JW.},    
    journal = {Nucleic Acids Res},    
    year    = {2025},    
    doi     = {10.1093/nar/gkae923},    
    pmid    = {39436044}        
    }
    @article{lin299290,
    title   = {Early detection of bacterial pneumonia by characteristic induced odor signatures.},    
    author  = {Arnold K, Gomez-Mejia A, de Figueiredo M, Boccard J, Singh KD, Rudaz S, Sinues P, Zinkernagel AS.},    
    journal = {BMC Infect Dis},    
    year    = {2024},    
    doi     = {10.1186/s12879-024-10371-7},    
    pmid    = {39731069}        
    }
    @article{lin299344,
    title   = {Research Progress on the Antibacterial Activity of Natural Flavonoids.},    
    author  = {Zhang Z, Cao M, Shang Z, Xu J, Chen X, Zhu Z, Wang W, Wei X, Zhou X, Bai Y, Zhang J.},    
    journal = {Antibiotics (Basel)},    
    year    = {2025},    
    doi     = {10.3390/antibiotics14040334},    
    pmid    = {40298463}        
    }
    @article{lin299289,
    title   = {Antibiotic resistance and factors associated with colonization dynamics of <i>Staphylococcus aureus</i> and <i>Streptococcus pneumoniae</i> in healthy children in Lima, Peru.},    
    author  = {Li Valverde VM, Aguirre Castaneda PC, Gonzales BE, Castillo-Tokumori F, Vidal JE, Ochoa TJ.},    
    journal = {Epidemiol Infect},    
    year    = {2025},    
    doi     = {10.1017/s0950268825100277},    
    pmid    = {40903821}        
    }
    @article{lin299295,
    title   = {New <i>Streptomyces</i>-Derived Antibacterial Compounds Targeting Gram-Positive Bacteria: A Systematic Review.},    
    author  = {Ait Assou S, El Hassouni M.},    
    journal = {ScientificWorldJournal},    
    year    = {2025},    
    doi     = {10.1155/tswj/6659874},    
    pmid    = {41040133}        
    }
    @article{lin299288,
    title   = {Montelukast treats <i>Streptococcus pneumoniae</i>-induced sepsis via antibacterial and anti-inflammatory activities.},    
    author  = {Cao W, Xu D, Yu H, Shen X.},    
    journal = {Microbiol Spectr},    
    year    = {2025},    
    doi     = {10.1128/spectrum.01221-25},    
    pmid    = {41090944}        
    }
