@article{lin45031,
title = {Reclassification of strains MAFF 303099T and R7A into Mesorhizobiumjaponicum sp. nov.},
author = {Martinez-Hidalgo P, Ramirez-Bahena MH, Flores-Felix JD, Igual JM, Sanjuan J, Leon-Barrios M, Peix A, Velazquez E},
journal = {Int J Syst Evol Microbiol},
year = {2016},
doi = {10.1099/ijsem.0.001448},
pmid = {27565417}
}
@article{lin291209,
title = {Mesorhizobium sanjuanii sp. nov., isolated from nodules of Lotus tenuis in the saline-alkaline lowlands of Flooding Pampa, Argentina.},
author = {Sannazzaro AI, Torres Tejerizo G, Fontana MF, Cumpa Velasquez LM, Hansen LH, Pistorio M, Estrella MJ.},
journal = {Int J Syst Evol Microbiol},
year = {2018},
doi = {10.1099/ijsem.0.002924},
pmid = {30063199}
}
@article{lin45030,
title = {Mesorhizobium carmichaelinearum sp. nov., isolated from Carmichaelineae spp. root nodules.},
author = {De Meyer SE, Andrews M, James EK, Willems A},
journal = {Int J Syst Evol Microbiol},
year = {2018},
doi = {10.1099/ijsem.0.003120},
pmid = {30457516}
}
@article{lin291246,
title = {Cycad Coralloid Roots Contain Bacterial Communities Including Cyanobacteria and Caulobacter spp. That Encode Niche-Specific Biosynthetic Gene Clusters.},
author = {Gutierrez-Garcia K, Bustos-Diaz ED, Corona-Gomez JA, Ramos-Aboites HE, Selem-Mojica N, Cruz-Morales P, Perez-Farrera MA, Barona-Gomez F, Cibrian-Jaramillo A.},
journal = {Genome Biol Evol},
year = {2019},
doi = {10.1093/gbe/evy266},
pmid = {30534962}
}
@article{lin291225,
title = {Characterization, expression and application of a zearalenone degrading enzyme from Neurospora crassa.},
author = {Bi K, Zhang W, Xiao Z, Zhang D.},
journal = {AMB Express},
year = {2018},
doi = {10.1186/s13568-018-0723-z},
pmid = {30570697}
}
@article{lin45034,
title = {traG Gene Is Conserved across Mesorhizobium spp. Able to Nodulate the Same Host Plant and Expressed in Response to Root Exudates.},
author = {Paco A, da-Silva JR, Eliziario F, Brigido C, Oliveira S, Alexandre A},
journal = {Biomed Res Int},
year = {2019},
doi = {10.1155/2019/3715271},
pmid = {30834262}
}
@article{lin45033,
title = {Two Broad Host Range Rhizobial Strains Isolated From Relict Legumes Have Various Complementary Effects on Symbiotic Parameters of Co-inoculated Plants.},
author = {Safronova V, Belimov A, Sazanova A, Chirak E, Kuznetsova I, Andronov E, Pinaev A, Tsyganova A, Seliverstova E, Kitaeva A, Tsyganov V, Tikhonovich I},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.00514},
pmid = {30930885}
}
@article{lin291218,
title = {Structural comparison of p-hydroxybenzoate hydroxylase (PobA) from Pseudomonas putida with PobA from other Pseudomonas spp. and other monooxygenases.},
author = {Lazar JT, Shuvalova L, Rosas-Lemus M, Kiryukhina O, Satchell KJF, Minasov G.},
journal = {Acta Crystallogr F Struct Biol Commun},
year = {2019},
doi = {10.1107/s2053230x19008653},
pmid = {31282871}
}
@article{lin291240,
title = {Differential mechanisms of tolerance to extreme environmental conditions in tardigrades.},
author = {Carrero D, Perez-Silva JG, Quesada V, Lopez-Otin C.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-51471-8},
pmid = {31624306}
}
@article{lin291239,
title = {Dual activity of PNGM-1 pinpoints the evolutionary origin of subclass B3 metallo-beta-lactamases: a molecular and evolutionary study.},
author = {Lee JH, Takahashi M, Jeon JH, Kang LW, Seki M, Park KS, Hong MK, Park YS, Kim TY, Karim AM, Lee JH, Nashimoto M, Lee SH.},
journal = {Emerg Microbes Infect},
year = {2019},
doi = {10.1080/22221751.2019.1692638},
pmid = {31749408}
}
@article{lin291224,
title = {Lotus Accessions Possess Multiple Checkpoints Triggered by Different Type III Secretion System Effectors of the Wide-Host-Range Symbiont Bradyrhizobium elkanii USDA61.},
author = {Kusakabe S, Higasitani N, Kaneko T, Yasuda M, Miwa H, Okazaki S, Saeki K, Higashitani A, Sato S.},
journal = {Microbes Environ},
year = {2020},
doi = {10.1264/jsme2.me19141},
pmid = {32074548}
}
@article{lin291213,
title = {A novel way to synthesize pantothenate in bacteria involves beta-alanine synthase present in uracil degradation pathway.},
author = {Lopez-Samano M, Beltran LFL, Sanchez-Thomas R, Davalos A, Villasenor T, Garcia-Garcia JD, Garcia-de Los Santos A.},
journal = {Microbiologyopen},
year = {2020},
doi = {10.1002/mbo3.1006},
pmid = {32112625}
}
@article{lin291236,
title = {Plant Growth Promotion Abilities of Phylogenetically Diverse Mesorhizobium Strains: Effect in the Root Colonization and Development of Tomato Seedlings.},
author = {Menendez E, Perez-Yepez J, Hernandez M, Rodriguez-Perez A, Velazquez E, Leon-Barrios M.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8030412},
pmid = {32183288}
}
@article{lin291241,
title = {Rhizobium leguminosarum bv. trifolii NodD2 Enhances Competitive Nodule Colonization in the Clover-Rhizobium Symbiosis.},
author = {Ferguson S, Major AS, Sullivan JT, Bourke SD, Kelly SJ, Perry BJ, Ronson CW.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.01268-20},
pmid = {32651206}
}
@article{lin291237,
title = {Characterization of the genomically encoded fosfomycin resistance enzyme from Mycobacterium abscessus.},
author = {Travis S, Shay MR, Manabe S, Gilbert NC, Frantom PA, Thompson MK.},
journal = {Medchemcomm},
year = {2019},
doi = {10.1039/c9md00372j},
pmid = {32952996}
}
@article{lin291233,
title = {alpha-proteobacteria synthesize biotin precursor pimeloyl-ACP using BioZ 3-ketoacyl-ACP synthase and lysine catabolism.},
author = {Hu Y, Cronan JE.},
journal = {Nat Commun},
year = {2020},
doi = {10.1038/s41467-020-19251-5},
pmid = {33154364}
}
@article{lin291229,
title = {COG database update: focus on microbial diversity, model organisms, and widespread pathogens.},
author = {Galperin MY, Wolf YI, Makarova KS, Vera Alvarez R, Landsman D, Koonin EV.},
journal = {Nucleic Acids Res},
year = {2021},
doi = {10.1093/nar/gkaa1018},
pmid = {33167031}
}
@article{lin291232,
title = {RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach.},
author = {Taboada-Castro H, Castro-Mondragon JA, Aguilar-Vera A, Hernandez-Alvarez AJ, van Helden J, Encarnacion-Guevara S.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.567471},
pmid = {33250866}
}
@article{lin291235,
title = {Whole-Genome Sequencing of Bradyrhizobium diazoefficiens 113-2 and Comparative Genomic Analysis Provide Molecular Insights Into Species Specificity and Host Specificity.},
author = {Li R, Feng Y, Chen H, Zhang C, Huang Y, Chen L, Hao Q, Cao D, Yuan S, Zhou X.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.576800},
pmid = {33329441}
}
@article{lin291220,
title = {Evolution of diverse effective N2-fixing microsymbionts of Cicer arietinum following horizontal transfer of the Mesorhizobium ciceri CC1192 symbiosis integrative and conjugative element.},
author = {Hill Y, Colombi E, Bonello E, Haskett T, Ramsay J, O'Hara G, Terpolilli J.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.02558-20},
pmid = {33355157}
}
@article{lin291244,
title = {Evolution of Wolbachia mutualism and reproductive parasitism: insight from two novel strains that co-infect cat fleas.},
author = {Driscoll TP, Verhoeve VI, Brockway C, Shrewsberry DL, Plumer M, Sevdalis SE, Beckmann JF, Krueger LM, Macaluso KR, Azad AF, Gillespie JJ.},
journal = {PeerJ},
year = {2020},
doi = {10.7717/peerj.10646},
pmid = {33362982}
}
@article{lin291238,
title = {Visualizing the superfamily of metallo-beta-lactamases through sequence similarity network neighborhood connectivity analysis.},
author = {Gonzalez JM.},
journal = {Heliyon},
year = {2021},
doi = {10.1016/j.heliyon.2020.e05867},
pmid = {33426353}
}
@article{lin291243,
title = {Biochemical and structural characterization of the BioZ enzyme engaged in bacterial biotin synthesis pathway.},
author = {Zhang S, Xu Y, Guan H, Cui T, Liao Y, Wei W, Li J, Hassan BH, Zhang H, Jia X, Ouyang S, Feng Y.},
journal = {Nat Commun},
year = {2021},
doi = {10.1038/s41467-021-22360-4},
pmid = {33824341}
}
@article{lin291223,
title = {Combining SIMS and mechanistic modelling to reveal nutrient kinetics in an algal-bacterial mutualism.},
author = {Laeverenz Schlogelhofer H, Peaudecerf FJ, Bunbury F, Whitehouse MJ, Foster RA, Smith AG, Croze OA.},
journal = {PLoS One},
year = {2021},
doi = {10.1371/journal.pone.0251643},
pmid = {34014955}
}
@article{lin291234,
title = {Ancient Bacterial Class Alphaproteobacteria Cytochrome P450 Monooxygenases Can Be Found in Other Bacterial Species.},
author = {Nzuza N, Padayachee T, Syed PR, Krys JD, Chen W, Gront D, Nelson DR, Syed K.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22115542},
pmid = {34073951}
}
@article{lin291215,
title = {Mesorhizobium sp. J8 can establish symbiosis with Glycyrrhiza uralensis, increasing glycyrrhizin production.},
author = {Kusaba I, Nakao T, Maita H, Sato S, Chijiiwa R, Yamada E, Arima S, Kojoma M, Ishimaru K, Akashi R, Suzuki A.},
journal = {Plant Biotechnol (Tokyo)},
year = {2021},
doi = {10.5511/plantbiotechnology.20.1124a},
pmid = {34177325}
}
@article{lin291230,
title = {Phylogenomic Reconstruction and Metabolic Potential of the Genus Aminobacter.},
author = {Artuso I, Turrini P, Pirolo M, Lugli GA, Ventura M, Visca P.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9061332},
pmid = {34205374}
}
@article{lin291242,
title = {Legume-rhizobium dance: an agricultural tool that could be improved?},
author = {Basile LA, Lepek VC.},
journal = {Microb Biotechnol},
year = {2021},
doi = {10.1111/1751-7915.13906},
pmid = {34318611}
}
@article{lin291226,
title = {Rapid HILIC-Z ion mobility mass spectrometry (RHIMMS) method for untargeted metabolomics of complex biological samples.},
author = {Picmanova M, Moses T, Cortada-Garcia J, Barrett G, Florance H, Pandor S, Burgess K.},
journal = {Metabolomics},
year = {2022},
doi = {10.1007/s11306-022-01871-1},
pmid = {35229219}
}
@article{lin45032,
title = {Phenolic Acids Induce Nod Factor Production in Lotus japonicus-Mesorhizobium Symbiosis.},
author = {Shimamura M, Kumaki T, Hashimoto S, Saeki K, Ayabe SI, Higashitani A, Akashi T, Sato S, Aoki T},
journal = {Microbes Environ},
year = {2022},
doi = {10.1264/jsme2.ME21094},
pmid = {35283370}
}
@article{lin291216,
title = {Assessment of Physicochemical, Microbiological and Toxicological Hazards at an Illegal Landfill in Central Poland.},
author = {Szulc J, Okrasa M, Nowak A, Niziol J, Ruman T, Kuberski S.},
journal = {Int J Environ Res Public Health},
year = {2022},
doi = {10.3390/ijerph19084826},
pmid = {35457694}
}
@article{lin291221,
title = {Legumes of the Sardinia Island: Knowledge on Symbiotic and Endophytic Bacteria and Interactive Software Tool for Plant Species Determination.},
author = {Muresu R, Porceddu A, Concheri G, Stevanato P, Squartini A.},
journal = {Plants (Basel)},
year = {2022},
doi = {10.3390/plants11111521},
pmid = {35684293}
}
@article{lin291245,
title = {Rational Design of the Soluble Variant of l-Pipecolic Acid Hydroxylase using the alpha-Helix Rule and the Hydropathy Contradiction Rule.},
author = {Shinoda S, Itakura A, Sasano H, Miyake R, Kawabata H, Asano Y.},
journal = {ACS Omega},
year = {2022},
doi = {10.1021/acsomega.2c04247},
pmid = {36033675}
}
@article{lin291219,
title = {Exposure of Pseudomonas aeruginosa to Cinnamaldehyde Selects Multidrug Resistant Mutants.},
author = {Tetard A, Gaillot S, Dubois E, Aarras S, Valot B, Phan G, Plesiat P, Llanes C.},
journal = {Antibiotics (Basel)},
year = {2022},
doi = {10.3390/antibiotics11121790},
pmid = {36551447}
}
@article{lin291228,
title = {Sphingomonas sediminicola Is an Endosymbiotic Bacterium Able to Induce the Formation of Root Nodules in Pea (Pisum sativum L.) and to Enhance Plant Biomass Production.},
author = {Mazoyon C, Hirel B, Pecourt A, Catterou M, Gutierrez L, Sarazin V, Dubois F, Duclercq J.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11010199},
pmid = {36677491}
}
@article{lin291214,
title = {Leveraging comparative genomics to uncover alien genes in bacterial genomes.},
author = {Sengupta S, Azad RK.},
journal = {Microb Genom},
year = {2023},
doi = {10.1099/mgen.0.000939},
pmid = {36748570}
}
@article{lin291202,
title = {Evaluation of qPCR to Detect Shifts in Population Composition of the Rhizobial Symbiont Mesorhizobium japonicum during Serial in Planta Transfers.},
author = {Quides KW, Lee Y, Hur T, Atamian HS.},
journal = {Biology (Basel)},
year = {2023},
doi = {10.3390/biology12020277},
pmid = {36829553}
}
@article{lin291197,
title = {A Mesorhizobium japonicum quorum sensing circuit that involves three linked genes and an unusual acyl-homoserine lactone signal.},
author = {Suo Z, Cummings DA, Puri AW, Schaefer AL, Greenberg EP.},
journal = {mBio},
year = {2023},
doi = {10.1128/mbio.01010-23},
pmid = {37227303}
}
@article{lin291222,
title = {DUF2285 is a novel helix-turn-helix domain variant that orchestrates both activation and antiactivation of conjugative element transfer in proteobacteria.},
author = {Jowsey WJ, Morris CRP, Hall DA, Sullivan JT, Fagerlund RD, Eto KY, Solomon PD, Mackay JP, Bond CS, Ramsay JP, Ronson CW.},
journal = {Nucleic Acids Res},
year = {2023},
doi = {10.1093/nar/gkad457},
pmid = {37246713}
}
@article{lin291208,
title = {The Type IV Secretion System (T4SS) Mediates Symbiosis between Bradyrhizobium sp. SUTN9-2 and Legumes.},
author = {Wangthaisong P, Piromyou P, Songwattana P, Wongdee J, Teamtaisong K, Tittabutr P, Boonkerd N, Teaumroong N.},
journal = {Appl Environ Microbiol},
year = {2023},
doi = {10.1128/aem.00040-23},
pmid = {37255432}
}
@article{lin291211,
title = {Synergy between Rhizobial Co-Microsymbionts Leads to an Increase in the Efficiency of Plant-Microbe Interactions.},
author = {Safronova V, Sazanova A, Belimov A, Guro P, Kuznetsova I, Karlov D, Chirak E, Yuzikhin O, Verkhozina A, Afonin A, Tikhonovich I.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11051206},
pmid = {37317180}
}
@article{lin291198,
title = {Influence of cyclic di-GMP metabolism to T3SS expression, biofilm formation and symbiosis efficiency in Mesorhizobium japonicum MAFF303099.},
author = {Escobar MR, Lepek VC, Basile LA.},
journal = {FEMS Microbiol Lett},
year = {2023},
doi = {10.1093/femsle/fnad087},
pmid = {37632199}
}
@article{lin291203,
title = {A simple and efficient protocol for generating transgenic hairy roots using Agrobacterium rhizogenes.},
author = {Ferguson S, Abel NB, Reid D, Madsen LH, Luu TB, Andersen KR, Stougaard J, Radutoiu S.},
journal = {PLoS One},
year = {2023},
doi = {10.1371/journal.pone.0291680},
pmid = {37910566}
}
@article{lin291206,
title = {Fungal and bacterial species richness in biodeteriorated seventeenth century Venetian manuscripts.},
author = {Stratigaki M, Armirotti A, Ottonello G, Manente S, Traviglia A.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-57228-2},
pmid = {38523163}
}
@article{lin291207,
title = {Guidelines for the description of rhizobial symbiovars.},
author = {Martinez-Romero E, Peix A, Hungria M, Mousavi SA, Martinez-Romero J, Young P.},
journal = {Int J Syst Evol Microbiol},
year = {2024},
doi = {10.1099/ijsem.0.006373},
pmid = {38743471}
}
@article{lin291196,
title = {Rhizobial Secretion of Truncated Exopolysaccharides Severely Impairs the Mesorhizobium-Lotus Symbiosis.},
author = {Wightman T, Muszynski A, Kelly SJ, Sullivan JT, Smart CJ, Stougaard J, Ferguson S, Azadi P, Ronson CW.},
journal = {Mol Plant Microbe Interact},
year = {2024},
doi = {10.1094/mpmi-03-24-0024-r},
pmid = {38904752}
}
@article{lin291200,
title = {Comparative genomic and transcriptomic analyses provide new insight into symbiotic host specificity.},
author = {Yuan S, Leng P, Feng Y, Jin F, Zhang H, Zhang C, Huang Y, Shan Z, Yang Z, Hao Q, Chen S, Chen L, Cao D, Guo W, Yang H, Chen H, Zhou X.},
journal = {iScience},
year = {2024},
doi = {10.1016/j.isci.2024.110207},
pmid = {38984200}
}
@article{lin291201,
title = {Scarcity of fixed carbon transfer in a model microbial phototroph-heterotroph interaction.},
author = {Dupuis S, Lingappa UF, Mayali X, Sindermann ES, Chastain JL, Weber PK, Stuart R, Merchant SS.},
journal = {ISME J},
year = {2024},
doi = {10.1093/ismejo/wrae140},
pmid = {39046282}
}
@article{lin291212,
title = {RhizoBindingSites v2.0 Is a Bioinformatic Database of DNA Motifs Potentially Involved in Transcriptional Regulation Deduced From Their Genomic Sites.},
author = {Taboada-Castro H, Hernandez-Alvarez AJ, Castro-Mondragon JA, Encarnacion-Guevara S.},
journal = {Bioinform Biol Insights},
year = {2024},
doi = {10.1177/11779322241272395},
pmid = {39246685}
}
@article{lin291210,
title = {The putative type 4 secretion system effector BspD is involved in maintaining envelope integrity of the pathogen Brucella.},
author = {Ketterer M, Chiquet P, Esposito M, Sedzicki J, Quebatte M, Dehio C.},
journal = {mSphere},
year = {2024},
doi = {10.1128/msphere.00232-24},
pmid = {39387552}
}
@article{lin291231,
title = {Cyclic Isothiocyanate Goitrin Impairs Lotus japonicus Nodulation, Affects the Proteomes of Nodules and Free Mesorhizobium loti, and Induces the Formation of Caffeic Acid Derivatives in Bacterial Cultures.},
author = {Jeong S, Schutz V, Demir F, Preusche M, Huesgen P, Bigler L, Kovacic F, Gutbrod K, Dormann P, Schulz M.},
journal = {Plants (Basel)},
year = {2024},
doi = {10.3390/plants13202897},
pmid = {39458844}
}
@article{lin291205,
title = {Integrating metagenomics and culturomics to uncover the soil bacterial community in Asparagus cochinchinensis cultivation.},
author = {Yu J, Yang S, Zhang X, Liu X, Tang X, Wang L, Chen J, Luo H, Liu C, Song C.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1467864},
pmid = {39697658}
}
@article{lin291217,
title = {Identification of EcpK, a bacterial tyrosine pseudokinase important for exopolysaccharide biosynthesis in Myxococcus xanthus.},
author = {Blocher L, Schwabe J, Glatter T, Sogaard-Andersen L.},
journal = {J Bacteriol},
year = {2025},
doi = {10.1128/jb.00499-24},
pmid = {40067014}
}
@article{lin291227,
title = {Magnetizing Biotech-Advances in (In Vivo) Magnetic Enzyme Immobilization.},
author = {Olcucu G, Jaeger KE, Krauss U.},
journal = {Eng Life Sci},
year = {2025},
doi = {10.1002/elsc.70000},
pmid = {40083857}
}
@article{lin291195,
title = {RNA-seq analysis of transcription patterns during infection of Mesorhizobium japonicum by phage Cp1R7A-A1.},
author = {Gunathilake K, Loos K, Yost C, Hynes MF.},
journal = {Can J Microbiol},
year = {2025},
doi = {10.1139/cjm-2025-0061},
pmid = {40577838}
}
@article{lin291199,
title = {Meta-omics reveals subgingival plaque reconstruction dynamics.},
author = {Zhou F, Wu Y, Ren B, Liu Y, Luo K, Li Q, Huang F, Peng X, Li Y, Su Z, Li J.},
journal = {J Oral Microbiol},
year = {2025},
doi = {10.1080/20002297.2025.2569528},
pmid = {41098770}
}
@article{lin291204,
title = {Metagenomics and In Vitro Growth-Promoting Experiments Revealed the Potential Roles of Mycorrhizal Fungus Humicolopsis cephalosporioides and Helper Bacteria in Cheilotheca humilis Growth.},
author = {Liu Y, Shang Y, Wang X, Li X, Yu Z, Zeng Z, Chen Z, Wang L, Xiang T, Huang X.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13102387},
pmid = {41156846}
}