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title = {D-Ala-D-Ala ligases from glycopeptide antibiotic-producing organisms are highly homologous to the enterococcal vancomycin-resistance ligases VanA and VanB.},
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title = {DdlN from vancomycin-producing Amycolatopsis orientalis C329.2 is a VanA homologue with D-alanyl-D-lactate ligase activity.},
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title = {A periplasmic D-alanyl-D-alanine dipeptidase in the gram-negative bacterium Salmonella enterica.},
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title = {Vancomycin production is enhanced in chemostat culture with biomass-recycle.},
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title = {Identification and analysis of the balhimycin biosynthetic gene cluster and its use for manipulating glycopeptide biosynthesis in Amycolatopsis mediterranei DSM5908.},
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title = {VanX, a bacterial D-alanyl-D-alanine dipeptidase: resistance, immunity, or survival function?},
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title = {The Vancomycin biosynthetic pathway is induced in oxygen-limited Amycolatopsis orientalis (ATCC 19795) cultures that do not produce antibiotic.},
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title = {Biosynthesis of L-p-hydroxyphenylglycine, a non-proteinogenic amino acid constituent of peptide antibiotics.},
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title = {Tandem action of glycosyltransferases in the maturation of vancomycin and teicoplanin aglycones: novel glycopeptides.},
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title = {Isolation and characterization of actinomycetes from Brazilian tropical soils.},
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title = {Screening, overexpression and characterization of an N-acylamino acid racemase from Amycolatopsis orientalis subsp. lurida.},
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journal = {Appl Microbiol Biotechnol},
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journal = {Antonie Van Leeuwenhoek},
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title = {[Increase in eremomycin production by regeneration and UV-irradiation of Amycolatopsis orientalis subsp. eremomycini protoplasts].},
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title = {Regulation of the Streptomyces coelicolor calcium-dependent antibiotic by absA, encoding a cluster-linked two-component system.},
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journal = {J Bacteriol},
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title = {Assembling the glycopeptide antibiotic scaffold: The biosynthesis of A47934 from Streptomyces toyocaensis NRRL15009.},
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title = {Purification, crystallization and preliminary structural studies of dTDP-4-keto-6-deoxy-glucose-5-epimerase (EvaD) from Amycolatopsis orientalis, the fourth enzyme in the dTDP-L-epivancosamine biosynthetic pathway.},
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journal = {Acta Crystallogr D Biol Crystallogr},
year = {2002},
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title = {Crystal structure of OxyB, a cytochrome P450 implicated in an oxidative phenol coupling reaction during vancomycin biosynthesis.},
author = {Zerbe K, Pylypenko O, Vitali F, Zhang W, Rouset S, Heck M, Vrijbloed JW, Bischoff D, Bister B, Sussmuth RD, Pelzer S, Wohlleben W, Robinson JA, Schlichting I.},
journal = {J Biol Chem},
year = {2002},
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title = {Optimization of fermentation conditions for production of glycopeptide antibiotic vancomycin by Amycolatopsis orientalis.},
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title = {Combinatorial glycosylation of glycopeptide antibiotics.},
author = {Baltz RH.},
journal = {Chem Biol},
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title = {Crystal structure of OxyC, a cytochrome P450 implicated in an oxidative C-C coupling reaction during vancomycin biosynthesis.},
author = {Pylypenko O, Vitali F, Zerbe K, Robinson JA, Schlichting I.},
journal = {J Biol Chem},
year = {2003},
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journal = {Protein Sci},
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title = {Amycolatopsis decaplanina sp. nov., a novel member of the genus with unusual morphology.},
author = {Wink J, Gandhi J, Kroppenstedt RM, Seibert G, Straubler B, Schumann P, Stackebrandt E.},
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title = {Reclassification of Amycolatopsis orientalis subsp. lurida Lechevalier et al. 1986 as Amycolatopsis lurida sp. nov., comb. nov.},
author = {Stackebrandt E, Kroppenstedt RM, Wink J, Schumann P},
journal = {Int J Syst Evol Microbiol},
year = {2004},
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title = {Distribution and phylogenetic analysis of family 19 chitinases in Actinobacteria.},
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title = {Mechanism of intrinsic resistance to vancomycin in Clostridium innocuum NCIB 10674.},
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title = {Antimicrobial resistance gene delivery in animal feeds.},
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journal = {Emerg Infect Dis},
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title = {Site-directed mutagenesis and protein 3D-homology modelling suggest a catalytic mechanism for UDP-glucose-dependent betanidin 5-O-glucosyltransferase from Dorotheanthus bellidiformis.},
author = {Hans J, Brandt W, Vogt T.},
journal = {Plant J},
year = {2004},
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title = {Cloning, sequencing, and functional analysis of an iterative type I polyketide synthase gene cluster for biosynthesis of the antitumor chlorinated polyenone neocarzilin in "Streptomyces carzinostaticus".},
author = {Otsuka M, Ichinose K, Fujii I, Ebizuka Y.},
journal = {Antimicrob Agents Chemother},
year = {2004},
doi = {10.1128/aac.48.9.3468-3476.2004},
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title = {Mutational analysis of nocK and nocL in the nocardicin a producer Nocardia uniformis.},
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journal = {J Bacteriol},
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doi = {10.1128/jb.187.2.739-746.2005},
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title = {Purification and characterization of a chitinase from Amycolatopsis orientalis with N-acetyllactosamine-repeating unit releasing activity.},
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journal = {Biochem Biophys Res Commun},
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title = {Two exo-beta-D-glucosaminidases/exochitosanases from actinomycetes define a new subfamily within family 2 of glycoside hydrolases.},
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journal = {Biochem J},
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title = {Novel actinomycete isolated from bulking industrial sludge.},
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journal = {Appl Environ Microbiol},
year = {1986},
doi = {10.1128/aem.52.6.1324-1330.1986},
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@article{lin27275,
title = {Reclassification of Amycolatopsis orientalis DSM 43387 as Amycolatopsis benzoatilytica sp. nov.},
author = {Majumdar S, Prabhagaran SR, Shivaji S, Lal R},
journal = {Int J Syst Evol Microbiol},
year = {2006},
doi = {10.1099/ijs.0.63766-0},
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title = {Amycolatopsis minnesotensis sp. nov., isolated from a prairie soil.},
author = {Lee SD, Kinkel LL, Samac DA.},
journal = {Int J Syst Evol Microbiol},
year = {2006},
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title = {Metabolic engineering of the E. coli L-phenylalanine pathway for the production of D-phenylglycine (D-Phg).},
author = {Muller U, van Assema F, Gunsior M, Orf S, Kremer S, Schipper D, Wagemans A, Townsend CA, Sonke T, Bovenberg R, Wubbolts M.},
journal = {Metab Eng},
year = {2006},
doi = {10.1016/j.ymben.2005.12.001},
pmid = {16466681}
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@article{lin333056,
title = {Exploration of Amycolatopsis diversity in soil using genus-specific primers and novel selective media.},
author = {Tan GY, Ward AC, Goodfellow M.},
journal = {Syst Appl Microbiol},
year = {2006},
doi = {10.1016/j.syapm.2006.01.007},
pmid = {16466884}
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title = {Production of poly(L-lactide)-degrading enzyme by Amycolatopsis orientalis for biological recycling of poly(L-lactide).},
author = {Jarerat A, Tokiwa Y, Tanaka H.},
journal = {Appl Microbiol Biotechnol},
year = {2006},
doi = {10.1007/s00253-006-0343-4},
pmid = {16477443}
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title = {Exo-beta-D-glucosaminidase from Amycolatopsis orientalis: catalytic residues, sugar recognition specificity, kinetics, and synergism.},
author = {Fukamizo T, Fleury A, Cote N, Mitsutomi M, Brzezinski R.},
journal = {Glycobiology},
year = {2006},
doi = {10.1093/glycob/cwl026},
pmid = {16877749}
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@article{lin333041,
title = {Cloning and expression of a cytochrome P450 hydroxylase gene from Amycolatopsis orientalis: hydroxylation of epothilone B for the production of epothilone F.},
author = {Basch J, Chiang SJ.},
journal = {J Ind Microbiol Biotechnol},
year = {2007},
doi = {10.1007/s10295-006-0173-5},
pmid = {16972046}
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@article{lin333204,
title = {Exploring glycopeptide-resistance in Staphylococcus aureus: a combined proteomics and transcriptomics approach for the identification of resistance-related markers.},
author = {Scherl A, Francois P, Charbonnier Y, Deshusses JM, Koessler T, Huyghe A, Bento M, Stahl-Zeng J, Fischer A, Masselot A, Vaezzadeh A, Galle F, Renzoni A, Vaudaux P, Lew D, Zimmermann-Ivol CG, Binz PA, Sanchez JC, Hochstrasser DF, Schrenzel J.},
journal = {BMC Genomics},
year = {2006},
doi = {10.1186/1471-2164-7-296},
pmid = {17121677}
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@article{lin333069,
title = {Genomic analyses lead to novel secondary metabolites. Part 3. ECO-0501, a novel antibacterial of a new class.},
author = {Banskota AH, Mcalpine JB, Sorensen D, Ibrahim A, Aouidate M, Piraee M, Alarco AM, Farnet CM, Zazopoulos E.},
journal = {J Antibiot (Tokyo)},
year = {2006},
doi = {10.1038/ja.2006.74},
pmid = {17136886}
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@article{lin333209,
title = {Characterization of TDP-4-keto-6-deoxy-D-glucose-3,4-ketoisomerase from the D-mycaminose biosynthetic pathway of Streptomyces fradiae: in vitro activity and substrate specificity studies.},
author = {Melancon CE, Hong L, White JA, Liu YN, Liu HW.},
journal = {Biochemistry},
year = {2007},
doi = {10.1021/bi061907y},
pmid = {17209568}
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@article{lin333048,
title = {Balance between aerobic and anaerobic metabolites production of Amycolatopsis orientalis depending on initial glucose concentration.},
author = {Ayar-Kayali H, Tarhan L.},
journal = {Prep Biochem Biotechnol},
year = {2007},
doi = {10.1080/10826060701386737},
pmid = {17516254}
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@article{lin333038,
title = {Optimization of culture conditions and scale-up to pilot and plant scales for vancomycin production by Amycolatopsis orientalis.},
author = {Jung HM, Kim SY, Moon HJ, Oh DK, Lee JK.},
journal = {Appl Microbiol Biotechnol},
year = {2007},
doi = {10.1007/s00253-007-1221-4},
pmid = {17938907}
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@article{lin333063,
title = {Enzymatic synthesis of spacer-linked divalent glycosides carrying N-acetylglucosamine and N-acetyllactosamine: analysis of cross-linking activities with WGA.},
author = {Misawa Y, Akimoto T, Amarume S, Murata T, Usui T.},
journal = {J Biochem},
year = {2008},
doi = {10.1093/jb/mvm200},
pmid = {17977857}
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@article{lin333060,
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title = {Characterization of Streptomyces spp. isolated from the sea surface microlayer in the Trondheim Fjord, Norway.},
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title = {Engineering enzymes for improved catalytic efficiency: a computational study of site mutagenesis in epothilone-B hydroxylase.},
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title = {Structure and function of the glycopeptide N-methyltransferase MtfA, a tool for the biosynthesis of modified glycopeptide antibiotics.},
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title = {Structure of ristocetin A in complex with a bacterial cell-wall mimetic.},
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journal = {Acta Crystallogr D Biol Crystallogr},
year = {2009},
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title = {Vancomycin leading to lupus flare in an elderly lady: a case report.},
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title = {Reduced vancomycin susceptibility in Staphylococcus aureus, including vancomycin-intermediate and heterogeneous vancomycin-intermediate strains: resistance mechanisms, laboratory detection, and clinical implications.},
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title = {The rate-limiting catalytic steps of hydroxymandelate synthase from Amycolatopsis orientalis.},
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journal = {Biochemistry},
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title = {Crystallization and preliminary X-ray crystallographic studies of an exo-beta-D-glucosaminidase from Trichoderma reesei.},
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@article{lin333040,
title = {Genome mining in Amycolatopsis balhimycina for ferredoxins capable of supporting cytochrome P450 enzymes involved in glycopeptide antibiotic biosynthesis.},
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@article{lin333179,
title = {TDP-L-megosamine biosynthesis pathway elucidation and megalomicin a production in Escherichia coli.},
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@article{lin333107,
title = {A biosynthetic pathway for BE-7585A, a 2-thiosugar-containing angucycline-type natural product.},
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title = {Structural characterization of OxyD, a cytochrome P450 involved in beta-hydroxytyrosine formation in vancomycin biosynthesis.},
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title = {Structure and mechanism of ORF36, an amino sugar oxidizing enzyme in everninomicin biosynthesis .},
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title = {Intra- and extra-cellular flux distributions of TCA and glyoxalate cycle and vancomycin production of Amycolatopsis orieantalis grown in different glycerol concentration.},
author = {Ayar-Kayali H, Tarhan L.},
journal = {Prikl Biokhim Mikrobiol},
year = {2010},
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title = {Differential proteomic analysis highlights metabolic strategies associated with balhimycin production in Amycolatopsis balhimycina chemostat cultivations.},
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journal = {Microb Cell Fact},
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@article{lin333021,
title = {Pentose phosphate pathway flux analysis for glycopeptide antibiotic vancomycin production during glucose-limited cultivation of Amycolatopsis orientalis.},
author = {Ayar-Kayali H.},
journal = {Prep Biochem Biotechnol},
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title = {Vancomycin-associated spontaneous cutaneous adverse drug reactions.},
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title = {Metabolic engineering of the L-phenylalanine pathway in Escherichia coli for the production of S- or R-mandelic acid.},
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title = {Actinoplanes teichomyceticus ATCC 31121 as a cell factory for producing teicoplanin.},
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title = {The role of Ile87 of CYP158A2 in oxidative coupling reaction.},
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journal = {Arch Biochem Biophys},
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title = {Quality assessment of U.S. marketplace vancomycin for injection products using high-resolution liquid chromatography-mass spectrometry and potency assays.},
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journal = {Antimicrob Agents Chemother},
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@article{lin333148,
title = {Modular glucuronoxylan-specific xylanase with a family CBM35 carbohydrate-binding module.},
author = {Valenzuela SV, Diaz P, Pastor FI.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.07932-11},
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@article{lin333168,
title = {Biochemical and structural characterization of germicidin synthase: analysis of a type III polyketide synthase that employs acyl-ACP as a starter unit donor.},
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journal = {J Am Chem Soc},
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@article{lin333174,
title = {Probing the catalytic mechanism of a C-3'-methyltransferase involved in the biosynthesis of D-tetronitrose.},
author = {Bruender NA, Holden HM.},
journal = {Protein Sci},
year = {2012},
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title = {Methods to optimize myxobacterial fermentations using off-gas analysis.},
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journal = {Microb Cell Fact},
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title = {P450 monooxygenases (P450ome) of the model white rot fungus Phanerochaete chrysosporium.},
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journal = {Crit Rev Microbiol},
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doi = {10.3109/1040841x.2012.682050},
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title = {Characterization of a rifampin-inactivating glycosyltransferase from a screen of environmental actinomycetes.},
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journal = {Antimicrob Agents Chemother},
year = {2012},
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@article{lin333014,
title = {Type II thioesterase gene (ECO-orf27) from Amycolatopsis orientalis influences production of the polyketide antibiotic, ECO-0501 (LW01).},
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journal = {Biotechnol Lett},
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title = {Interspecies modulation of bacterial development through iron competition and siderophore piracy.},
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journal = {Mol Microbiol},
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title = {mMass as a software tool for the annotation of cyclic peptide tandem mass spectra.},
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title = {Identification of a gene responsible for amido black decolorization isolated from Amycolatopsis orientalis.},
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journal = {World J Microbiol Biotechnol},
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title = {Comparison of six generic vancomycin products for treatment of methicillin-resistant Staphylococcus aureus experimental endocarditis in rabbits.},
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journal = {Antimicrob Agents Chemother},
year = {2013},
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@article{lin333023,
title = {Structure of EvaA: a paradigm for sugar 2,3-dehydratases.},
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journal = {Biochemistry},
year = {2013},
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@article{lin333087,
title = {Crystallization and preliminary X-ray crystallographic analysis of recombinant beta-mannosidase from Aspergillus niger.},
author = {Demo G, Fliedrova B, Weignerova L, Wimmerova M.},
journal = {Acta Crystallogr Sect F Struct Biol Cryst Commun},
year = {2013},
doi = {10.1107/s1744309113002522},
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title = {Opportunities for synthetic biology in antibiotics: expanding glycopeptide chemical diversity.},
author = {Thaker MN, Wright GD.},
journal = {ACS Synth Biol},
year = {2015},
doi = {10.1021/sb300092n},
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@article{lin333008,
title = {A regulatory gene (ECO-orf4) required for ECO-0501 biosynthesis in Amycolatopsis orientalis.},
author = {Shen Y, Huang H, Zhu L, Luo M, Chen D.},
journal = {J Basic Microbiol},
year = {2014},
doi = {10.1002/jobm.201200314},
pmid = {23681482}
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@article{lin27273,
title = {Genome Sequence of the Vancomycin-Producing Amycolatopsis orientalis subsp. orientalis Strain KCTC 9412T.},
author = {Jeong H, Sim YM, Kim HJ, Lee DW, Lim SK, Lee SJ},
journal = {Genome Announc},
year = {2013},
doi = {10.1128/genomeA.00408-13},
pmid = {23814036}
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@article{lin333219,
title = {Micromonospora kangleipakensis sp. nov., isolated from a sample of limestone quarry.},
author = {Nimaichand S, Zhang YG, Cheng J, Li L, Zhang DF, Zhou EM, Dong L, Ningthoujam DS, Li WJ.},
journal = {Int J Syst Evol Microbiol},
year = {2013},
doi = {10.1099/ijs.0.052746-0},
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title = {Genome Sequences of Amycolatopsis orientalis subsp. orientalis Strains DSM 43388 and DSM 46075.},
author = {Jeong H, Sim YM, Kim HJ, Lee YJ, Lee DW, Lim SK, Lee SJ.},
journal = {Genome Announc},
year = {2013},
doi = {10.1128/genomea.00545-13},
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@article{lin333188,
title = {Chiral hydroxylation at the mononuclear nonheme Fe(II) center of 4-(S) hydroxymandelate synthase--a structure-activity relationship analysis.},
author = {Di Giuro CM, Konstantinovics C, Rinner U, Nowikow C, Leitner E, Straganz GD.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0068932},
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@article{lin333153,
title = {Direct replacement of antibodies with molecularly imprinted polymer nanoparticles in ELISA--development of a novel assay for vancomycin.},
author = {Chianella I, Guerreiro A, Moczko E, Caygill JS, Piletska EV, De Vargas Sansalvador IM, Whitcombe MJ, Piletsky SA.},
journal = {Anal Chem},
year = {2013},
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@article{lin333183,
title = {The first identification of carbohydrate binding modules specific to chitosan.},
author = {Shinya S, Ohnuma T, Yamashiro R, Kimoto H, Kusaoke H, Anbazhagan P, Juffer AH, Fukamizo T.},
journal = {J Biol Chem},
year = {2013},
doi = {10.1074/jbc.m113.503243},
pmid = {23986450}
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title = {Lactobacillus reuteri and Escherichia coli in the human gut microbiota may predict weight gain associated with vancomycin treatment.},
author = {Million M, Thuny F, Angelakis E, Casalta JP, Giorgi R, Habib G, Raoult D.},
journal = {Nutr Diabetes},
year = {2013},
doi = {10.1038/nutd.2013.28},
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@article{lin333200,
title = {Structure and biochemical properties of the alkene producing cytochrome P450 OleTJE (CYP152L1) from the Jeotgalicoccus sp. 8456 bacterium.},
author = {Belcher J, McLean KJ, Matthews S, Woodward LS, Fisher K, Rigby SEJ, Nelson DR, Potts D, Baynham MT, Parker DA, Leys D, Munro AW.},
journal = {J Biol Chem},
year = {2014},
doi = {10.1074/jbc.m113.527325},
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@article{lin333178,
title = {Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.},
author = {Suzuki N, Fujimoto Z, Kim YM, Momma M, Kishine N, Suzuki R, Suzuki S, Kitamura S, Kobayashi M, Kimura A, Funane K.},
journal = {J Biol Chem},
year = {2014},
doi = {10.1074/jbc.m114.547992},
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@article{lin333166,
title = {Co-opting sulphur-carrier proteins from primary metabolic pathways for 2-thiosugar biosynthesis.},
author = {Sasaki E, Zhang X, Sun HG, Lu MY, Liu TL, Ou A, Li JY, Chen YH, Ealick SE, Liu HW.},
journal = {Nature},
year = {2014},
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@article{lin333082,
title = {Complete genome sequence and comparative genomic analyses of the vancomycin-producing Amycolatopsis orientalis.},
author = {Xu L, Huang H, Wei W, Zhong Y, Tang B, Yuan H, Zhu L, Huang W, Ge M, Yang S, Zheng H, Jiang W, Chen D, Zhao GP, Zhao W.},
journal = {BMC Genomics},
year = {2014},
doi = {10.1186/1471-2164-15-363},
pmid = {24884615}
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@article{lin333185,
title = {Relationship between glycopeptide production and resistance in the actinomycete Nonomuraea sp. ATCC 39727.},
author = {Marcone GL, Binda E, Carrano L, Bibb M, Marinelli F.},
journal = {Antimicrob Agents Chemother},
year = {2014},
doi = {10.1128/aac.02626-14},
pmid = {24957828}
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@article{lin333017,
title = {Heterologous pathway for the production of L-phenylglycine from glucose by E. coli.},
author = {Liu SP, Liu RX, El-Rotail AA, Ding ZY, Gu ZH, Zhang L, Shi GY.},
journal = {J Biotechnol},
year = {2014},
doi = {10.1016/j.jbiotec.2014.06.033},
pmid = {25011099}
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@article{lin333105,
title = {Optimization of nebulized delivery of linezolid, daptomycin, and vancomycin aerosol.},
author = {Zarogoulidis P, Kioumis I, Lampaki S, Organtzis J, Porpodis K, Spyratos D, Pitsiou G, Petridis D, Pataka A, Huang H, Li Q, Yarmus L, Hohenforst-Schmidt W, Pezirkianidis N, Zarogoulidis K.},
journal = {Drug Des Devel Ther},
year = {2014},
doi = {10.2147/dddt.s66576},
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title = {Mining the metabiome: identifying novel natural products from microbial communities.},
author = {Milshteyn A, Schneider JS, Brady SF.},
journal = {Chem Biol},
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doi = {10.1016/j.chembiol.2014.08.006},
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@article{lin333000,
title = {Characterization of plasmid pXL100 from Amycolatopsis orientalis HCCB10007 and construction of a shuttle vector.},
author = {Xu L, Li Y, Zhu L, Zhao W, Chen D, Huang W, Yang S.},
journal = {J Basic Microbiol},
year = {2015},
doi = {10.1002/jobm.201400210},
pmid = {25384460}
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title = {A diverse range of bacterial and eukaryotic chitinases hydrolyzes the LacNAc (Galbeta1-4GlcNAc) and LacdiNAc (GalNAcbeta1-4GlcNAc) motifs found on vertebrate and insect cells.},
author = {Frederiksen RF, Yoshimura Y, Storgaard BG, Paspaliari DK, Petersen BO, Chen K, Larsen T, Duus JO, Ingmer H, Bovin NV, Westerlind U, Blixt O, Palcic MM, Leisner JJ.},
journal = {J Biol Chem},
year = {2015},
doi = {10.1074/jbc.m114.607291},
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title = {Sequence-based screening and characterization of cytosolic mandelate oxidase using oxygen as electron acceptor.},
author = {Liu SP, Liu RX, Zhang L, Shi GY.},
journal = {Enzyme Microb Technol},
year = {2015},
doi = {10.1016/j.enzmictec.2014.11.001},
pmid = {25640721}
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title = {Single-step fermentative production of the cholesterol-lowering drug pravastatin via reprogramming of Penicillium chrysogenum.},
author = {McLean KJ, Hans M, Meijrink B, van Scheppingen WB, Vollebregt A, Tee KL, van der Laan JM, Leys D, Munro AW, van den Berg MA.},
journal = {Proc Natl Acad Sci U S A},
year = {2015},
doi = {10.1073/pnas.1419028112},
pmid = {25691737}
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title = {Evolution of cyclizing 5-aminolevulinate synthases in the biosynthesis of actinomycete secondary metabolites: outcomes for genetic screening techniques.},
author = {Petrickova K, Petrickova K, Chronakova A, Zelenka T, Chrudimsky T, Pospisil S, Petricek M, Kristufek V.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00814},
pmid = {26300877}
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@article{lin333187,
title = {Involvement of a eukaryotic-like ubiquitin-related modifier in the proteasome pathway of the archaeon Sulfolobus acidocaldarius.},
author = {Anjum RS, Bray SM, Blackwood JK, Kilkenny ML, Coelho MA, Foster BM, Li S, Howard JA, Pellegrini L, Albers SV, Deery MJ, Robinson NP.},
journal = {Nat Commun},
year = {2015},
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pmid = {26348592}
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@article{lin333138,
title = {A Streptomyces coelicolor host for the heterologous expression of Type III polyketide synthase genes.},
author = {Thanapipatsiri A, Claesen J, Gomez-Escribano JP, Bibb M, Thamchaipenet A.},
journal = {Microb Cell Fact},
year = {2015},
doi = {10.1186/s12934-015-0335-0},
pmid = {26376792}
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@article{lin333117,
title = {Strain Improvement of Streptomyces xanthochromogenes RIA 1098 for Enhanced Pravastatin Production at High Compactin Concentrations.},
author = {Dzhavakhiya VV, Voinova TM, Glagoleva EV, Petukhov DV, Ovchinnikov AI, Kartashov MI, Kuznetsov BB, Skryabin KG.},
journal = {Indian J Microbiol},
year = {2015},
doi = {10.1007/s12088-015-0537-5},
pmid = {26543270}
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@article{lin333158,
title = {Controlled Delivery of Vancomycin via Charged Hydrogels.},
author = {Gustafson CT, Boakye-Agyeman F, Brinkman CL, Reid JM, Patel R, Bajzer Z, Dadsetan M, Yaszemski MJ.},
journal = {PLoS One},
year = {2016},
doi = {10.1371/journal.pone.0146401},
pmid = {26760034}
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@article{lin333217,
title = {Micromonospora soli sp. nov., isolated from rice rhizosphere soil.},
author = {Thawai C, Kittiwongwattana C, Thanaboripat D, Laosinwattana C, Koohakan P, Parinthawong N.},
journal = {Antonie Van Leeuwenhoek},
year = {2016},
doi = {10.1007/s10482-016-0651-3},
pmid = {26800665}
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@article{lin332994,
title = {Discovery of the New Plant Growth-Regulating Compound LYXLF2 Based on Manipulating the Halogenase in Amycolatopsis orientalis.},
author = {Xu L, Han T, Ge M, Zhu L, Qian X.},
journal = {Curr Microbiol},
year = {2016},
doi = {10.1007/s00284-016-1052-6},
pmid = {27220986}
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@article{lin333109,
title = {Engineering Escherichia coli for production of 4-hydroxymandelic acid using glucose-xylose mixture.},
author = {Li FF, Zhao Y, Li BZ, Qiao JJ, Zhao GR.},
journal = {Microb Cell Fact},
year = {2016},
doi = {10.1186/s12934-016-0489-4},
pmid = {27234226}
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@article{lin232481,
title = {Genetics and Genomics of the Genus Amycolatopsis.},
author = {Kumari R, Singh P, Lal R.},
journal = {Indian J Microbiol},
year = {2016},
doi = {10.1007/s12088-016-0590-8},
pmid = {27407288}
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@article{lin332995,
title = {Increased vancomycin production by overexpression of MbtH-like protein in Amycolatopsis orientalis KFCC10990P.},
author = {Lee KS, Lee BM, Ryu JH, Kim DH, Kim YH, Lim SK.},
journal = {Lett Appl Microbiol},
year = {2016},
doi = {10.1111/lam.12617},
pmid = {27432613}
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@article{lin27271,
title = {Degradation of carbonyl sulfide by Actinomycetes and detection of clade D of beta-class carbonic anhydrase.},
author = {Ogawa T, Kato H, Higashide M, Nishimiya M, Katayama Y},
journal = {FEMS Microbiol Lett},
year = {2016},
doi = {10.1093/femsle/fnw223},
pmid = {27671711}
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@article{lin333190,
title = {Molecular Events for Promotion of Vancomycin Resistance in Vancomycin Intermediate Staphylococcus aureus.},
author = {Hu Q, Peng H, Rao X.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.01601},
pmid = {27790199}
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@article{lin333144,
title = {The Stories Tryptophans Tell: Exploring Protein Dynamics of Heptosyltransferase I from Escherichia coli.},
author = {Cote JM, Ramirez-Mondragon CA, Siegel ZS, Czyzyk DJ, Gao J, Sham YY, Mukerji I, Taylor EA.},
journal = {Biochemistry},
year = {2017},
doi = {10.1021/acs.biochem.6b00850},
pmid = {28098447}
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@article{lin333156,
title = {The Structure of an Archaeal beta-Glucosaminidase Provides Insight into Glycoside Hydrolase Evolution.},
author = {Mine S, Watanabe M, Kamachi S, Abe Y, Ueda T.},
journal = {J Biol Chem},
year = {2017},
doi = {10.1074/jbc.m116.766535},
pmid = {28130448}
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@article{lin333154,
title = {Short-Chain Chitin Oligomers: Promoters of Plant Growth.},
author = {Winkler AJ, Dominguez-Nunez JA, Aranaz I, Poza-Carrion C, Ramonell K, Somerville S, Berrocal-Lobo M.},
journal = {Mar Drugs},
year = {2017},
doi = {10.3390/md15020040},
pmid = {28212295}
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@article{lin333184,
title = {Identification by Genome Mining of a Type I Polyketide Gene Cluster from Streptomyces argillaceus Involved in the Biosynthesis of Pyridine and Piperidine Alkaloids Argimycins P.},
author = {Ye S, Molloy B, Brana AF, Zabala D, Olano C, Cortes J, Moris F, Salas JA, Mendez C.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.00194},
pmid = {28239372}
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@article{lin333112,
title = {Mining of efficient microbial UDP-glycosyltransferases by motif evolution cross plant kingdom for application in biosynthesis of salidroside.},
author = {Fan B, Chen T, Zhang S, Wu B, He B.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/s41598-017-00568-z},
pmid = {28352078}
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@article{lin333061,
title = {Identification of nocamycin biosynthetic gene cluster from Saccharothrix syringae NRRL B-16468 and generation of new nocamycin derivatives by manipulating gene cluster.},
author = {Mo X, Shi C, Gui C, Zhang Y, Ju J, Wang Q.},
journal = {Microb Cell Fact},
year = {2017},
doi = {10.1186/s12934-017-0718-5},
pmid = {28599654}
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@article{lin333080,
title = {The putative polyketide cyclase MSMEG_0129 from Mycobacterium smegmatis: purification, crystallization and X-ray crystallographic analysis.},
author = {Zheng S, Zhou Y, Fleming J, Zhou Y, Liu W, Bi L.},
journal = {Acta Crystallogr F Struct Biol Commun},
year = {2017},
doi = {10.1107/s2053230x17008937},
pmid = {28695854}
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@article{lin333102,
title = {Overexpression of ginseng UGT72AL1 causes organ fusion in the axillary leaf branch of Arabidopsis.},
author = {Nguyen NQ, Lee OR.},
journal = {J Ginseng Res},
year = {2017},
doi = {10.1016/j.jgr.2017.03.002},
pmid = {28701886}
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@article{lin333169,
title = {Nanomaterial-based sensors for detection of foodborne bacterial pathogens and toxins as well as pork adulteration in meat products.},
author = {Inbaraj BS, Chen BH.},
journal = {J Food Drug Anal},
year = {2016},
doi = {10.1016/j.jfda.2015.05.001},
pmid = {28911398}
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@article{lin333098,
title = {A systematic study of the whole genome sequence of Amycolatopsis methanolica strain 239T provides an insight into its physiological and taxonomic properties which correlate with its position in the genus.},
author = {Tang B, Xie F, Zhao W, Wang J, Dai S, Zheng H, Ding X, Cen X, Liu H, Yu Y, Zhou H, Zhou Y, Zhang L, Goodfellow M, Zhao GP.},
journal = {Synth Syst Biotechnol},
year = {2016},
doi = {10.1016/j.synbio.2016.05.001},
pmid = {29062941}
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@article{lin232479,
title = {Expression of Genes for a Flavin Adenine Dinucleotide-Binding Oxidoreductase and a Methyltransferase from Mycobacterium chlorophenolicum Is Necessary for Biosynthesis of 10-Methyl Stearic Acid from Oleic Acid in Escherichia coli.},
author = {Machida S, Bakku RK, Suzuki I.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.02061},
pmid = {29109716}
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@article{lin333108,
title = {New WS9326A Derivatives and One New Annimycin Derivative with Antimalarial Activity are Produced by Streptomyces asterosporus DSM 41452 and Its Mutant.},
author = {Zhang S, Zhu J, Zechel DL, Jessen-Trefzer C, Eastman RT, Paululat T, Bechthold A.},
journal = {Chembiochem},
year = {2018},
doi = {10.1002/cbic.201700428},
pmid = {29148157}
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@article{lin332985,
title = {Role of two 5-aminolevulinic acid biosynthetic pathways in heme and secondary metabolite biosynthesis in Amycolatopsis orientalis.},
author = {Zhu L, Qian X, Chen D, Ge M.},
journal = {J Basic Microbiol},
year = {2018},
doi = {10.1002/jobm.201600758},
pmid = {29164655}
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@article{lin332999,
title = {Engineering of hydroxymandelate synthases and the aromatic amino acid pathway enables de novo biosynthesis of mandelic and 4-hydroxymandelic acid with Saccharomyces cerevisiae.},
author = {Reifenrath M, Boles E.},
journal = {Metab Eng},
year = {2018},
doi = {10.1016/j.ymben.2018.01.001},
pmid = {29330068}
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@article{lin333119,
title = {Insights into Key Interactions between Vancomycin and Bacterial Cell Wall Structures.},
author = {Wang F, Zhou H, Olademehin OP, Kim SJ, Tao P.},
journal = {ACS Omega},
year = {2018},
doi = {10.1021/acsomega.7b01483},
pmid = {29399648}
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@article{lin333111,
title = {Metabolic Engineering of the Shikimate Pathway for Production of Aromatics and Derived Compounds-Present and Future Strain Construction Strategies.},
author = {Averesch NJH, Kromer JO.},
journal = {Front Bioeng Biotechnol},
year = {2018},
doi = {10.3389/fbioe.2018.00032},
pmid = {29632862}
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@article{lin332984,
title = {Enhancement of A82846B yield and proportion by overexpressing the halogenase gene in Amycolatopsis orientalis SIPI18099.},
author = {Wang WY, Yang SB, Wu YJ, Shen XF, Chen SX.},
journal = {Appl Microbiol Biotechnol},
year = {2018},
doi = {10.1007/s00253-018-8983-8},
pmid = {29728728}
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@article{lin232482,
title = {Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species.},
author = {Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N.},
journal = {BMC Genomics},
year = {2018},
doi = {10.1186/s12864-018-4809-4},
pmid = {29859036}
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@article{lin333162,
title = {Genome sequencing analysis of Streptomyces coelicolor mutants that overcome the phosphate-depending vancomycin lethal effect.},
author = {Santos-Beneit F.},
journal = {BMC Genomics},
year = {2018},
doi = {10.1186/s12864-018-4838-z},
pmid = {29898657}
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@article{lin333132,
title = {Chitinolytic functions in actinobacteria: ecology, enzymes, and evolution.},
author = {Lacombe-Harvey ME, Brzezinski R, Beaulieu C.},
journal = {Appl Microbiol Biotechnol},
year = {2018},
doi = {10.1007/s00253-018-9149-4},
pmid = {29931600}
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@article{lin333143,
title = {Genome Sequencing and analyses of Two Marine Fungi from the North Sea Unraveled a Plethora of Novel Biosynthetic Gene Clusters.},
author = {Kumar A, Sorensen JL, Hansen FT, Arvas M, Syed MF, Hassan L, Benz JP, Record E, Henrissat B, Poggeler S, Kempken F.},
journal = {Sci Rep},
year = {2018},
doi = {10.1038/s41598-018-28473-z},
pmid = {29976990}
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@article{lin333197,
title = {Antimicrobial Resistance in Enterococcus spp. of animal origin.},
author = {Torres C, Alonso CA, Ruiz-Ripa L, Leon-Sampedro R, Del Campo R, Coque TM.},
journal = {Microbiol Spectr},
year = {2018},
doi = {10.1128/microbiolspec.arba-0032-2018},
pmid = {30051804}
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@article{lin333212,
title = {Genome-Based Taxonomic Classification of the Phylum Actinobacteria.},
author = {Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.02007},
pmid = {30186281}
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@article{lin333035,
title = {Revisiting the Taxonomic Status of the Biomedically and Industrially Important Genus Amycolatopsis, Using a Phylogenomic Approach.},
author = {Sangal V, Goodfellow M, Blom J, Tan GYA, Klenk HP, Sutcliffe IC.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.02281},
pmid = {30319584}
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@article{lin232480,
title = {Installation of Multiple Aryl Ether Crosslinks onto Non-Native Substrate Peptides by the Vancomycin OxyB.},
author = {Forneris CC, Ozturk S, Sorensen EJ, Seyedsayamdost MR.},
journal = {Tetrahedron},
year = {2018},
doi = {10.1016/j.tet.2018.04.028},
pmid = {30386000}
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@article{lin333139,
title = {A Dual-Function Antibiotic-Transporter Conjugate Exhibits Superior Activity in Sterilizing MRSA Biofilms and Killing Persister Cells.},
author = {Antonoplis A, Zang X, Huttner MA, Chong KKL, Lee YB, Co JY, Amieva MR, Kline KA, Wender PA, Cegelski L.},
journal = {J Am Chem Soc},
year = {2018},
doi = {10.1021/jacs.8b08711},
pmid = {30388366}
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@article{lin333147,
title = {A Novel Alkaliphilic Streptomyces Inhibits ESKAPE Pathogens.},
author = {Terra L, Dyson PJ, Hitchings MD, Thomas L, Abdelhameed A, Banat IM, Gazze SA, Vujaklija D, Facey PD, Francis LW, Quinn GA.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.02458},
pmid = {30459722}
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@article{lin333177,
title = {Antibiotic Resistance Mechanisms in Bacteria: Relationships Between Resistance Determinants of Antibiotic Producers, Environmental Bacteria, and Clinical Pathogens.},
author = {Peterson E, Kaur P.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.02928},
pmid = {30555448}
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@article{lin333101,
title = {Production of a Novel Tetrahydroxynaphthalene (THN) Derivative from Nocardia sp. CS682 by Metabolic Engineering and Its Bioactivities.},
author = {Mishra R, Dhakal D, Han JM, Lim HN, Jung HJ, Yamaguchi T, Sohng JK.},
journal = {Molecules},
year = {2019},
doi = {10.3390/molecules24020244},
pmid = {30634706}
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@article{lin333106,
title = {Streptomyces Volatile Compounds Influence Exploration and Microbial Community Dynamics by Altering Iron Availability.},
author = {Jones SE, Pham CA, Zambri MP, McKillip J, Carlson EE, Elliot MA.},
journal = {mBio},
year = {2019},
doi = {10.1128/mbio.00171-19},
pmid = {30837334}
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@article{lin333037,
title = {Detecting and prioritizing biosynthetic gene clusters for bioactive compounds in bacteria and fungi.},
author = {Tran PN, Yen MR, Chiang CY, Lin HC, Chen PY.},
journal = {Appl Microbiol Biotechnol},
year = {2019},
doi = {10.1007/s00253-019-09708-z},
pmid = {30859257}
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@article{lin333127,
title = {Application of Chitinous Materials in Production and Purification of a Poly(l-lactic acid) Depolymerase from Pseudomonas tamsuii TKU015.},
author = {Liang TW, Jen SN, Nguyen AD, Wang SL.},
journal = {Polymers (Basel)},
year = {2016},
doi = {10.3390/polym8030098},
pmid = {30979189}
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@article{lin333020,
title = {Integrating vectors for genetic studies in the rare Actinomycete Amycolatopsis marina.},
author = {Gao H, Murugesan B, Hossbach J, Evans SK, Stark WM, Smith MCM.},
journal = {BMC Biotechnol},
year = {2019},
doi = {10.1186/s12896-019-0521-y},
pmid = {31164159}
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@article{lin333133,
title = {Minimal exposure of lipid II cycle intermediates triggers cell wall antibiotic resistance.},
author = {Piepenbreier H, Diehl A, Fritz G.},
journal = {Nat Commun},
year = {2019},
doi = {10.1038/s41467-019-10673-4},
pmid = {31227716}
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@article{lin333182,
title = {A Review of the Microbial Production of Bioactive Natural Products and Biologics.},
author = {Pham JV, Yilma MA, Feliz A, Majid MT, Maffetone N, Walker JR, Kim E, Cho HJ, Reynolds JM, Song MC, Park SR, Yoon YJ.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.01404},
pmid = {31281299}
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@article{lin333146,
title = {TxtH is a key component of the thaxtomin biosynthetic machinery in the potato common scab pathogen Streptomyces scabies.},
author = {Li Y, Liu J, Adekunle D, Bown L, Tahlan K, Bignell DRD.},
journal = {Mol Plant Pathol},
year = {2019},
doi = {10.1111/mpp.12843},
pmid = {31282068}
}
@article{lin333131,
title = {Taxonomy and Broad-Spectrum Antifungal Activity of Streptomyces sp. SCA3-4 Isolated From Rhizosphere Soil of Opuntia stricta.},
author = {Qi D, Zou L, Zhou D, Chen Y, Gao Z, Feng R, Zhang M, Li K, Xie J, Wang W.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.01390},
pmid = {31316480}
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@article{lin333100,
title = {Biochemical and structural explorations of alpha-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.},
author = {Yeh HW, Lin KH, Lyu SY, Li YS, Huang CM, Wang YL, Shih HW, Hsu NS, Wu CJ, Li TL.},
journal = {Acta Crystallogr D Struct Biol},
year = {2019},
doi = {10.1107/s2059798319009574},
pmid = {31373572}
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@article{lin333113,
title = {The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.},
author = {Lyu SY, Lin KH, Yeh HW, Li YS, Huang CM, Wang YL, Shih HW, Hsu NS, Wu CJ, Li TL.},
journal = {Acta Crystallogr D Struct Biol},
year = {2019},
doi = {10.1107/s2059798319011938},
pmid = {31588923}
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@article{lin333085,
title = {Physicochemical Stability of Vancomycin at High Concentrations in Polypropylene Syringes.},
author = {d'Huart E, Vigneron J, Charmillon A, Clarot I, Demore B.},
journal = {Can J Hosp Pharm},
year = {2019},
doi = {10.4212/cjhp.v72i5.2929},
pmid = {31692543}
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@article{lin333172,
title = {Molecular mechanisms of vancomycin resistance.},
author = {Stogios PJ, Savchenko A.},
journal = {Protein Sci},
year = {2020},
doi = {10.1002/pro.3819},
pmid = {31899563}
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@article{lin232497,
title = {Mechanism-of-Action Classification of Antibiotics by Global Transcriptome Profiling.},
author = {O'Rourke A, Beyhan S, Choi Y, Morales P, Chan AP, Espinoza JL, Dupont CL, Meyer KJ, Spoering A, Lewis K, Nierman WC, Nelson KE.},
journal = {Antimicrob Agents Chemother},
year = {2020},
doi = {10.1128/aac.01207-19},
pmid = {31907190}
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@article{lin333136,
title = {From Worms to Drug Candidate: The Story of Odilorhabdins, a New Class of Antimicrobial Agents.},
author = {Racine E, Gualtieri M.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.02893},
pmid = {31921069}
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@article{lin333121,
title = {Development and Challenges of Antimicrobial Peptides for Therapeutic Applications.},
author = {Chen CH, Lu TK.},
journal = {Antibiotics (Basel)},
year = {2020},
doi = {10.3390/antibiotics9010024},
pmid = {31941022}
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@article{lin333214,
title = {Sutterella faecalis sp. nov., isolated from human faeces.},
author = {Oh BS, Kim JS, Yu SY, Ryu SW, Park SH, Kang SW, Park JE, Choi SH, Han KI, Lee KC, Eom MK, Suh MK, Kim HS, Lee DH, Yoon H, Kim BY, Lee JH, Lee JS, Lee JH.},
journal = {J Microbiol},
year = {2020},
doi = {10.1007/s12275-020-9396-9},
pmid = {31993985}
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@article{lin333062,
title = {Genetic engineering approaches for the fermentative production of phenylglycines.},
author = {Moosmann D, Mokeev V, Kulik A, Osipenkov N, Kocadinc S, Ort-Winklbauer R, Handel F, Hennrich O, Youn JW, Sprenger GA, Mast Y.},
journal = {Appl Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s00253-020-10447-9},
pmid = {32078019}
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@article{lin333058,
title = {Efficient Biocatalytic Preparation of Rebaudioside KA: Highly Selective Glycosylation Coupled with UDPG Regeneration.},
author = {Zhang Y, Xu S, Jin Y, Dai Y, Chen Y, Wu X.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-63379-9},
pmid = {32277148}
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@article{lin333068,
title = {Systematic Evaluation of Imine-Reducing Enzymes: Common Principles in Imine Reductases, beta-Hydroxy Acid Dehydrogenases, and Short-Chain Dehydrogenases/ Reductases.},
author = {Stockinger P, Roth S, Muller M, Pleiss J.},
journal = {Chembiochem},
year = {2020},
doi = {10.1002/cbic.202000213},
pmid = {32311225}
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@article{lin333157,
title = {Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers.},
author = {Robinson CJ, Carbonell P, Jervis AJ, Yan C, Hollywood KA, Dunstan MS, Currin A, Swainston N, Spiess R, Taylor S, Mulherin P, Parker S, Rowe W, Matthews NE, Malone KJ, Le Feuvre R, Shapira P, Barran P, Turner NJ, Micklefield J, Breitling R, Takano E, Scrutton NS.},
journal = {Metab Eng},
year = {2020},
doi = {10.1016/j.ymben.2020.04.008},
pmid = {32335188}
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@article{lin333089,
title = {Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.},
author = {Lin KH, Lyu SY, Yeh HW, Li YS, Hsu NS, Huang CM, Wang YL, Shih HW, Wang ZC, Wu CJ, Li TL.},
journal = {Protein Sci},
year = {2020},
doi = {10.1002/pro.3879},
pmid = {32362037}
}
@article{lin333079,
title = {Vancomycin-Lipopeptide Conjugates with High Antimicrobial Activity on Vancomycin-Resistant Enterococci.},
author = {Muhlberg E, Umstatter F, Domhan C, Hertlein T, Ohlsen K, Krause A, Kleist C, Beijer B, Zimmermann S, Haberkorn U, Mier W, Uhl P.},
journal = {Pharmaceuticals (Basel)},
year = {2020},
doi = {10.3390/ph13060110},
pmid = {32485876}
}
@article{lin333034,
title = {An aurora of natural products-based drug discovery is coming.},
author = {Tong Y, Deng Z.},
journal = {Synth Syst Biotechnol},
year = {2020},
doi = {10.1016/j.synbio.2020.05.003},
pmid = {32537523}
}
@article{lin232478,
title = {Glycopeptide Antibiotic Resistance Genes: Distribution and Function in the Producer Actinomycetes.},
author = {Yushchuk O, Binda E, Marinelli F.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01173},
pmid = {32655512}
}
@article{lin332997,
title = {An overview of the factors playing a role in cytochrome P450 monooxygenase and ferredoxin interactions.},
author = {Chiliza ZE, Martinez-Oyanedel J, Syed K.},
journal = {Biophys Rev},
year = {2020},
doi = {10.1007/s12551-020-00749-7},
pmid = {32885385}
}
@article{lin333027,
title = {Biochemical characterization of a glycosyltransferase Gtf3 from Mycobacterium smegmatis: a case study of improved protein solubilization.},
author = {Bakli M, Karim L, Mokhtari-Soulimane N, Merzouk H, Vincent F.},
journal = {3 Biotech},
year = {2020},
doi = {10.1007/s13205-020-02431-x},
pmid = {32999813}
}
@article{lin333130,
title = {Tackling Antibiotic Resistance with Compounds of Natural Origin: A Comprehensive Review.},
author = {Alvarez-Martinez FJ, Barrajon-Catalan E, Micol V.},
journal = {Biomedicines},
year = {2020},
doi = {10.3390/biomedicines8100405},
pmid = {33050619}
}
@article{lin333120,
title = {Antibiotic Production and Antibiotic Resistance: The Two Sides of AbrB1/B2, a Two-Component System of Streptomyces coelicolor.},
author = {Sanchez de la Nieta R, Antoraz S, Alzate JF, Santamaria RI, Diaz M.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.587750},
pmid = {33162964}
}
@article{lin333170,
title = {Understanding tolerance to cell wall-active antibiotics.},
author = {Dorr T.},
journal = {Ann N Y Acad Sci},
year = {2021},
doi = {10.1111/nyas.14541},
pmid = {33274447}
}
@article{lin333114,
title = {Engineering the Erythromycin-Producing Strain Saccharopolyspora erythraea HOE107 for the Heterologous Production of Polyketide Antibiotics.},
author = {Lu J, Long Q, Zhao Z, Chen L, He W, Hong J, Liu K, Wang Y, Pang X, Deng Z, Tao M.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.593217},
pmid = {33363524}
}
@article{lin333189,
title = {Elucidating Solution Structures of Cyclic Peptides Using Molecular Dynamics Simulations.},
author = {Damjanovic J, Miao J, Huang H, Lin YS.},
journal = {Chem Rev},
year = {2021},
doi = {10.1021/acs.chemrev.0c01087},
pmid = {33426882}
}
@article{lin333006,
title = {Biosynthesis of Diverse Type II Polyketide Core Structures in Streptomyces coelicolor M1152.},
author = {Zhu X, Siitonen V, Melancon Iii CE, Metsa-Ketela M.},
journal = {ACS Synth Biol},
year = {2021},
doi = {10.1021/acssynbio.0c00482},
pmid = {33471506}
}
@article{lin333216,
title = {Comparative genomics and transcriptomics analyses provide insights into the high yield and regulatory mechanism of Norvancomycin biosynthesis in Amycolatopsis orientalis NCPC 2-48.},
author = {Li X, Zhang C, Zhao Y, Lei X, Jiang Z, Zhang X, Zheng Z, Si S, Wang L, Hong B.},
journal = {Microb Cell Fact},
year = {2021},
doi = {10.1186/s12934-021-01521-6},
pmid = {33531006}
}
@article{lin333099,
title = {Plant cell wall architecture guided design of CBM3-GH11 chimeras with enhanced xylanase activity using a tandem repeat left-handed beta-3-prism scaffold.},
author = {Pinheiro MP, Reis RAG, Dupree P, Ward RJ.},
journal = {Comput Struct Biotechnol J},
year = {2021},
doi = {10.1016/j.csbj.2021.01.011},
pmid = {33680354}
}
@article{lin333078,
title = {Chemotranscriptomic Profiling Defines Drug-Specific Signatures of the Glycopeptide Antibiotics Dalbavancin, Vancomycin and Chlorobiphenyl-Vancomycin in a VanB-Type-Resistant Streptomycete.},
author = {Hesketh A, Bucca G, Smith CP, Hong HJ.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.641756},
pmid = {33717038}
}
@article{lin333019,
title = {Secondary Metabolites of the Genus Amycolatopsis: Structures, Bioactivities and Biosynthesis.},
author = {Song Z, Xu T, Wang J, Hou Y, Liu C, Liu S, Wu S.},
journal = {Molecules},
year = {2021},
doi = {10.3390/molecules26071884},
pmid = {33810439}
}
@article{lin333007,
title = {The bactericidal effect of vancomycin is not altered by tranexamic acid, adrenalin, dexamethasone, or lidocaine in vitro.},
author = {Schwerdt C, Rohner E, Bohle S, Jacob B, Matziolis G.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-90302-7},
pmid = {34031481}
}
@article{lin333088,
title = {Mining Indonesian Microbial Biodiversity for Novel Natural Compounds by a Combined Genome Mining and Molecular Networking Approach.},
author = {Handayani I, Saad H, Ratnakomala S, Lisdiyanti P, Kusharyoto W, Krause J, Kulik A, Wohlleben W, Aziz S, Gross H, Gavriilidou A, Ziemert N, Mast Y.},
journal = {Mar Drugs},
year = {2021},
doi = {10.3390/md19060316},
pmid = {34071728}
}
@article{lin333072,
title = {Engineering Escherichia coli for renewable benzyl alcohol production.},
author = {Pugh S, McKenna R, Halloum I, Nielsen DR.},
journal = {Metab Eng Commun},
year = {2015},
doi = {10.1016/j.meteno.2015.06.002},
pmid = {34150507}
}
@article{lin332993,
title = {A Combinatorial Approach of High-Throughput Genomics and Mass Proteomics for Understanding the Regulation and Expression of Secondary Metabolite Production in Actinobacteria.},
author = {Gupta V, Singhvi N.},
journal = {mSystems},
year = {2021},
doi = {10.1128/msystems.00862-21},
pmid = {34427500}
}
@article{lin332978,
title = {Four-Step Pathway from Phenylpyruvate to Benzylamine, an Intermediate to the High-Energy Propellant CL-20.},
author = {Pandey RP, Casini A, Voigt CA, Gordon DB.},
journal = {ACS Synth Biol},
year = {2021},
doi = {10.1021/acssynbio.1c00021},
pmid = {34491727}
}
@article{lin332975,
title = {Strategy for Producing the High-Quality Glycopeptide Antibiotic A82846B in Amycolatopsis orientalis Based on the CRISPR-Cas12a System.},
author = {Qian H, Wei W, Chen XA, Mo XT, Ge M, Zhao QW, Li YQ.},
journal = {ACS Synth Biol},
year = {2021},
doi = {10.1021/acssynbio.1c00317},
pmid = {34628852}
}
@article{lin333077,
title = {Looking Back to Amycolatopsis: History of the Antibiotic Discovery and Future Prospects.},
author = {Kisil OV, Efimenko TA, Efremenkova OV.},
journal = {Antibiotics (Basel)},
year = {2021},
doi = {10.3390/antibiotics10101254},
pmid = {34680834}
}
@article{lin333059,
title = {Regulation of Resistance in Vancomycin-Resistant Enterococci: The VanRS Two-Component System.},
author = {Guffey AA, Loll PJ.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9102026},
pmid = {34683347}
}
@article{lin332982,
title = {Computational Study of Mechanism and Enantioselectivity of Imine Reductase from Amycolatopsis orientalis.},
author = {Prejano M, Sheng X, Himo F.},
journal = {ChemistryOpen},
year = {2022},
doi = {10.1002/open.202100250},
pmid = {34825518}
}
@article{lin333024,
title = {Amycolatopsis aidingensis sp. nov., a Halotolerant Actinobacterium, Produces New Secondary Metabolites.},
author = {Li R, Wang M, Ren Z, Ji Y, Yin M, Zhou H, Tang SK.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.743116},
pmid = {34938275}
}
@article{lin333115,
title = {The bone-degrading enzyme machinery: From multi-component understanding to the treatment of residues from the meat industry.},
author = {Fernandez-Lopez L, Sanchez-Carrillo S, Garcia-Moyano A, Borchert E, Almendral D, Alonso S, Cea-Rama I, Miguez N, Larsen O, Werner J, Makarova KS, Plou FJ, Dahlgren TG, Sanz-Aparicio J, Hentschel U, Bjerga GEK, Ferrer M.},
journal = {Comput Struct Biotechnol J},
year = {2021},
doi = {10.1016/j.csbj.2021.11.027},
pmid = {34938409}
}
@article{lin333135,
title = {Past and Future of Phage Therapy and Phage-Derived Proteins in Patients with Bone and Joint Infection.},
author = {Ferry T, Kolenda C, Briot T, Souche A, Lustig S, Josse J, Batailler C, Pirot F, Medina M, Leboucher G, Laurent F, On Behalf Of The Lyon Bji Study Group, On Behalf Of The PHAGEinLYON Study Group.},
journal = {Viruses},
year = {2021},
doi = {10.3390/v13122414},
pmid = {34960683}
}
@article{lin333002,
title = {Improved l-phenylglycine synthesis by introducing an engineered cofactor self-sufficient system.},
author = {Wang P, Zhang X, Tao Y, Lv X, Cheng S, Liu C.},
journal = {Synth Syst Biotechnol},
year = {2022},
doi = {10.1016/j.synbio.2021.12.008},
pmid = {35024478}
}
@article{lin332977,
title = {A Four-Step Enzymatic Cascade for Efficient Production of L-Phenylglycine from Biobased L-Phenylalanine.},
author = {Zhu Y, Yuan J.},
journal = {Chembiochem},
year = {2022},
doi = {10.1002/cbic.202100661},
pmid = {35132758}
}
@article{lin333003,
title = {Modification of Biphenolic Anti-Bacterial to Achieve Broad-Spectrum Activity.},
author = {Ochoa C, Roenfanz HF, Kozlowski MC.},
journal = {ChemMedChem},
year = {2022},
doi = {10.1002/cmdc.202100783},
pmid = {35191619}
}
@article{lin333044,
title = {Amycolatopsis camponoti sp. nov., new tetracenomycin-producing actinomycete isolated from carpenter ant Camponotus vagus.},
author = {Zakalyukina YV, Osterman IA, Wolf J, Neumann-Schaal M, Nouioui I, Biryukov MV.},
journal = {Antonie Van Leeuwenhoek},
year = {2022},
doi = {10.1007/s10482-022-01716-w},
pmid = {35218449}
}
@article{lin333074,
title = {Cytochrome P450 168A1 from Pseudomonas aeruginosa is involved in the hydroxylation of biologically relevant fatty acids.},
author = {Price CL, Warrilow AGS, Rolley NJ, Parker JE, Thoss V, Kelly DE, Corcionivoschi N, Kelly SL.},
journal = {PLoS One},
year = {2022},
doi = {10.1371/journal.pone.0265227},
pmid = {35312722}
}
@article{lin333028,
title = {Spinning sugars in antigen biosynthesis: characterization of the Coxiella burnetii and Streptomyces griseus TDP-sugar epimerases.},
author = {Cross AR, Roy S, Vivoli Vega M, Rejzek M, Nepogodiev SA, Cliff M, Salmon D, Isupov MN, Field RA, Prior JL, Harmer NJ, GoVV consortium.},
journal = {J Biol Chem},
year = {2022},
doi = {10.1016/j.jbc.2022.101903},
pmid = {35398092}
}
@article{lin333022,
title = {Genetics Behind the Glycosylation Patterns in the Biosynthesis of Dalbaheptides.},
author = {Yushchuk O, Zhukrovska K, Berini F, Fedorenko V, Marinelli F.},
journal = {Front Chem},
year = {2022},
doi = {10.3389/fchem.2022.858708},
pmid = {35402387}
}
@article{lin332989,
title = {Microbial synthesis of 4-hydroxybenzoic acid from renewable feedstocks.},
author = {Chen Y, Chen Y, Liu L, Zhang Y, Yuan J.},
journal = {Food Chem (Oxf)},
year = {2021},
doi = {10.1016/j.fochms.2021.100059},
pmid = {35415641}
}
@article{lin333052,
title = {Marker-Free Genome Engineering in Amycolatopsis Using the pSAM2 Site-Specific Recombination System.},
author = {Santos LDF, Caraty-Philippe L, Darbon E, Pernodet JL.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10040828},
pmid = {35456877}
}
@article{lin333033,
title = {Current state and future perspectives of cytochrome P450 enzymes for C-H and C=C oxygenation.},
author = {Yan Y, Wu J, Hu G, Gao C, Guo L, Chen X, Liu L, Song W.},
journal = {Synth Syst Biotechnol},
year = {2022},
doi = {10.1016/j.synbio.2022.04.009},
pmid = {35601824}
}
@article{lin333025,
title = {Predicting Antibiotic Effect of Vancomycin Using Pharmacokinetic/Pharmacodynamic Modeling and Simulation: Dense Sampling versus Sparse Sampling.},
author = {Kim YK, Lee JH, Jang HJ, Zang DY, Lee DH.},
journal = {Antibiotics (Basel)},
year = {2022},
doi = {10.3390/antibiotics11060743},
pmid = {35740150}
}
@article{lin333096,
title = {Chemometrics and genome mining reveal an unprecedented family of sugar acid-containing fungal nonribosomal cyclodepsipeptides.},
author = {Wang C, Xiao D, Dun B, Yin M, Tsega AS, Xie L, Li W, Yue Q, Wang S, Gao H, Lin M, Zhang L, Molnar I, Xu Y.},
journal = {Proc Natl Acad Sci U S A},
year = {2022},
doi = {10.1073/pnas.2123379119},
pmid = {35914151}
}
@article{lin333049,
title = {Three pairs of surrogate redox partners comparison for Class I cytochrome P450 enzyme activity reconstitution.},
author = {Liu X, Li F, Sun T, Guo J, Zhang X, Zheng X, Du L, Zhang W, Ma L, Li S.},
journal = {Commun Biol},
year = {2022},
doi = {10.1038/s42003-022-03764-4},
pmid = {35933448}
}
@article{lin332990,
title = {Vancomycin-Induced Fever and Neutropenia in an Immunocompetent Patient With Complicated Community-Acquired Pneumonia.},
author = {Alharbi HH, Al-Qurainees GI, Al-Hebshi A.},
journal = {Cureus},
year = {2022},
doi = {10.7759/cureus.26630},
pmid = {35949739}
}
@article{lin333125,
title = {Can intracellular Staphylococcus aureus in osteomyelitis be treated using current antibiotics? A systematic review and narrative synthesis.},
author = {Zelmer AR, Nelson R, Richter K, Atkins GJ.},
journal = {Bone Res},
year = {2022},
doi = {10.1038/s41413-022-00227-8},
pmid = {35961964}
}
@article{lin333110,
title = {Exploring the Promise of Endophytic Fungi: A Review of Novel Antimicrobial Compounds.},
author = {Caruso DJ, Palombo EA, Moulton SE, Zaferanloo B.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10101990},
pmid = {36296265}
}
@article{lin333042,
title = {Associations of HLA-A and HLA-B with vancomycin-induced drug reaction with eosinophilia and systemic symptoms in the Han-Chinese population.},
author = {Wang CW, Lin WC, Chen WT, Chen CB, Lu CW, Hou HH, Hui RC, Wu J, Chang CJ, Chang YC, Chung WH, Taiwan Severe Cutaneous Adverse Reaction Consortium.},
journal = {Front Pharmacol},
year = {2022},
doi = {10.3389/fphar.2022.954596},
pmid = {36506572}
}
@article{lin333018,
title = {Antarctic fungi with antibiotic potential isolated from Fort William Point, Antarctica.},
author = {Ordonez-Enireb E, Cucalon RV, Cardenas D, Ordonez N, Coello S, Elizalde P, Cardenas WB.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-25911-x},
pmid = {36509821}
}
@article{lin333091,
title = {Marine-Derived Actinomycetes: Biodegradation of Plastics and Formation of PHA Bioplastics-A Circular Bioeconomy Approach.},
author = {Oliveira J, Almeida PL, Sobral RG, Lourenco ND, Gaudencio SP.},
journal = {Mar Drugs},
year = {2022},
doi = {10.3390/md20120760},
pmid = {36547907}
}
@article{lin332991,
title = {Amycolatopsis from Desert Specialist Fungus-Growing Ants Suppresses Contaminant Fungi Using the Antibiotic ECO-0501.},
author = {Kim JH, Scherer G, Lumpkin DS, Rao K, Puentes Flores CD, Van Arnam EB.},
journal = {Appl Environ Microbiol},
year = {2023},
doi = {10.1128/aem.01838-22},
pmid = {36700628}
}
@article{lin333064,
title = {Rational design of enzyme activity and enantioselectivity.},
author = {Song Z, Zhang Q, Wu W, Pu Z, Yu H.},
journal = {Front Bioeng Biotechnol},
year = {2023},
doi = {10.3389/fbioe.2023.1129149},
pmid = {36761300}
}
@article{lin333009,
title = {Complete Genome Sequence Analysis of Kribbella sp. CA-293567 and Identification of the Kribbellichelins A & B and Sandramycin Biosynthetic Gene Clusters.},
author = {Sanchez-Hidalgo M, Garcia MJ, Gonzalez I, Oves-Costales D, Genilloud O.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11020265},
pmid = {36838228}
}
@article{lin333057,
title = {GC-MS Based Characterization, Antibacterial, Antifungal and Anti-Oncogenic Activity of Ethyl Acetate Extract of Aspergillus niger Strain AK-6 Isolated from Rhizospheric Soil.},
author = {Niazi SK, Basavarajappa DS, Kumaraswamy SH, Bepari A, Hiremath H, Nagaraja SK, Rudrappa M, Hugar A, Cordero MAW, Nayaka S.},
journal = {Curr Issues Mol Biol},
year = {2023},
doi = {10.3390/cimb45050241},
pmid = {37232710}
}
@article{lin332998,
title = {Identification of Antimicrobial Metabolites from the Egyptian Soil-Derived Amycolatopsis keratiniphila Revealed by Untargeted Metabolomics and Molecular Docking.},
author = {Hamed AA, Mohamed OG, Aboutabl EA, Fathy FI, Fawzy GA, El-Shiekh RA, Al-Karmalawy AA, Al-Taweel AM, Tripathi A, Elsayed TR.},
journal = {Metabolites},
year = {2023},
doi = {10.3390/metabo13050620},
pmid = {37233661}
}
@article{lin332996,
title = {Antibacterial Conjugates of Kanamycin A with Vancomycin and Eremomycin: Biological Activity and a New MS-Fragmentation Pattern of Cbz-Protected Amines.},
author = {Solyev PN, Isakova EB, Olsufyeva EN.},
journal = {Antibiotics (Basel)},
year = {2023},
doi = {10.3390/antibiotics12050894},
pmid = {37237799}
}
@article{lin333150,
title = {Fungal BGCs for Production of Secondary Metabolites: Main Types, Central Roles in Strain Improvement, and Regulation According to the Piano Principle.},
author = {Zhgun AA.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms241311184},
pmid = {37446362}
}
@article{lin333030,
title = {Antimicrobial Efficacy of 7-Hydroxyflavone Derived from Amycolatopsis sp. HSN-02 and Its Biocontrol Potential on Cercospora Leaf Spot Disease in Tomato Plants.},
author = {Math HH, Kumar RS, Chakraborty B, Almansour AI, Perumal K, Kantli GB, Nayaka S.},
journal = {Antibiotics (Basel)},
year = {2023},
doi = {10.3390/antibiotics12071175},
pmid = {37508271}
}
@article{lin333031,
title = {The Versatile Biocatalyst of Cytochrome P450 CYP102A1: Structure, Function, and Engineering.},
author = {Sun Y, Huang X, Osawa Y, Chen YE, Zhang H.},
journal = {Molecules},
year = {2023},
doi = {10.3390/molecules28145353},
pmid = {37513226}
}
@article{lin333134,
title = {Cyclic Peptides in Pipeline: What Future for These Great Molecules?},
author = {Costa L, Sousa E, Fernandes C.},
journal = {Pharmaceuticals (Basel)},
year = {2023},
doi = {10.3390/ph16070996},
pmid = {37513908}
}
@article{lin333054,
title = {Multi-integrated approach for unraveling small open reading frames potentially associated with secondary metabolism in Streptomyces.},
author = {Fan S-M, Li Z-Q, Zhang S-Z, Chen L-Y, Wei X-Y, Liang J, Zhao X-Q, Su C.},
journal = {mSystems},
year = {2023},
doi = {10.1128/msystems.00245-23},
pmid = {37712700}
}
@article{lin333218,
title = {Lytic polysaccharide monooxygenase synergized with lignin-degrading enzymes for efficient lignin degradation.},
author = {Sun S, Li F, Li M, Zhang W, Jiang Z, Zhao H, Pu Y, Ragauskas AJ, Dai SY, Zhang X, Yu H, Yuan JS, Xie S.},
journal = {iScience},
year = {2023},
doi = {10.1016/j.isci.2023.107870},
pmid = {37766973}
}
@article{lin232496,
title = {Design and Synthesis of d-Ala-d-Ala Silica Gel for a Binding Mode-Based Physicochemical Screening Method.},
author = {Kimishima A, Suzuki Y, Kosaka S, Honsho M, Honma S, Sakai K, Tsutsumi H, Inahashi Y, Watanabe Y, Iwatsuki M, Asami Y, Nakashima T.},
journal = {ACS Omega},
year = {2023},
doi = {10.1021/acsomega.3c03837},
pmid = {37901494}
}
@article{lin332987,
title = {Antibacterial activity of soil-isolated Bacillus altitudinis/pumilus complex against methicillin-resistant Staphylococcus aureus from Mwanza, Tanzania.},
author = {Abednego RN, Silago V.},
journal = {Afr J Lab Med},
year = {2023},
doi = {10.4102/ajlm.v12i1.2167},
pmid = {38094984}
}
@article{lin333010,
title = {Minimal aromatic aldehyde reduction (MARE) yeast platform for engineering vanillin production.},
author = {Mo Q, Yuan J.},
journal = {Biotechnol Biofuels Bioprod},
year = {2024},
doi = {10.1186/s13068-023-02454-5},
pmid = {38184607}
}
@article{lin232476,
title = {The Impact of Heterologous Regulatory Genes from Lipodepsipeptide Biosynthetic Gene Clusters on the Production of Teicoplanin and A40926.},
author = {Zhukrovska K, Binda E, Fedorenko V, Marinelli F, Yushchuk O.},
journal = {Antibiotics (Basel)},
year = {2024},
doi = {10.3390/antibiotics13020115},
pmid = {38391501}
}
@article{lin332992,
title = {Anti-Microbial Activities of Mussel-Derived Recombinant Proteins against Gram-Negative Bacteria.},
author = {Kim DY, Oh YB, Park JS, Min YH, Park MC.},
journal = {Antibiotics (Basel)},
year = {2024},
doi = {10.3390/antibiotics13030239},
pmid = {38534674}
}
@article{lin333029,
title = {Identification of a novel xanthan-binding module of a multi-modular Cohnella sp. xanthanase.},
author = {Han R, Baudrexl M, Ludwig C, Berezina OV, Rykov SV, Liebl W.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1386552},
pmid = {38596379}
}
@article{lin333071,
title = {Comparative genomics reveals insight into the phylogeny and habitat adaptation of novel Amycolatopsis species, an endophytic actinomycete associated with scab lesions on potato tubers.},
author = {Wannawong T, Mhuantong W, Macharoen P, Niemhom N, Sitdhipol J, Chaiyawan N, Umrung S, Tanasupawat S, Suwannarach N, Asami Y, Kuncharoen N.},
journal = {Front Plant Sci},
year = {2024},
doi = {10.3389/fpls.2024.1346574},
pmid = {38601305}
}
@article{lin332974,
title = {Novel methods to monitor the biodegradation of polylactic acid (PLA) by Amycolatopsis orientalis and Amycolatopsis thailandensis.},
author = {Yasin NM, Pancho F, Yasin M, Van Impe JFM, Akkermans S.},
journal = {Front Bioeng Biotechnol},
year = {2024},
doi = {10.3389/fbioe.2024.1355050},
pmid = {38655392}
}
@article{lin332976,
title = {Vancomycin Flushing Syndrome: A Case Report.},
author = {Shrivastava S, Shrivastava S.},
journal = {Cureus},
year = {2024},
doi = {10.7759/cureus.58487},
pmid = {38765435}
}
@article{lin333055,
title = {Exploring the sequence-function space of microbial fucosidases.},
author = {Martinez Gascuena A, Wu H, Wang R, Owen CD, Hernando PJ, Monaco S, Penner M, Xing K, Le Gall G, Gardner R, Ndeh D, Urbanowicz PA, Spencer DIR, Walsh M, Angulo J, Juge N.},
journal = {Commun Chem},
year = {2024},
doi = {10.1038/s42004-024-01212-4},
pmid = {38890439}
}
@article{lin332973,
title = {Rational construction of a high-quality and high-efficiency biosynthetic system and fermentation optimization for A82846B based on combinatorial strategies in Amycolatopsis orientalis.},
author = {Zhao X, Zhu C, Gao W, Xie H, Lyu Z, Zhao Q, Li Y.},
journal = {Microb Cell Fact},
year = {2024},
doi = {10.1186/s12934-024-02464-4},
pmid = {38943174}
}
@article{lin333001,
title = {Genome assembly, comparative genomics, and identification of genes/pathways underlying plant growth-promoting traits of an actinobacterial strain, Amycolatopsis sp. (BCA-696).},
author = {Gandham P, Vadla N, Saji A, Srinivas V, Ruperao P, Selvanayagam S, Saxena RK, Rathore A, Gopalakrishnan S, Thakur V.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-66835-y},
pmid = {38987320}
}
@article{lin332981,
title = {Development and Validation of Liquid Chromatographic Method for Fast Determination of Lincomycin, Polymyxin and Vancomycin in Preservation Solution for Transplants.},
author = {Lin Q, Nguyen T, Staffieri C, Van Schepdael A, Adams E.},
journal = {Molecules},
year = {2024},
doi = {10.3390/molecules29133166},
pmid = {38999118}
}
@article{lin333004,
title = {Effects of Nitrogen Accumulation, Transportation, and Grain Nutritional Quality and Advances in Fungal Endophyte Research in Quinoa (Chenopodium quinoa Willd.) Plants.},
author = {Li L, Jiang Z, Yang X, Zhang Y, Huang J, Dai J, Noor H, Wu X, Ren A, Gao Z, Sun M.},
journal = {J Fungi (Basel)},
year = {2024},
doi = {10.3390/jof10070504},
pmid = {39057389}
}
@article{lin332988,
title = {Phylogenetic Analysis of the Genes in D-Ala-D-Lactate Synthesizing Glycopeptide Resistance Operons: The Different Origins of Functional and Regulatory Genes.},
author = {Kardos G, Laczko L, Kaszab E, Timmer B, Szarka K, Prepost E, Banyai K.},
journal = {Antibiotics (Basel)},
year = {2024},
doi = {10.3390/antibiotics13070573},
pmid = {39061255}
}
@article{lin333013,
title = {Metabolic engineering of Escherichia coli for high-level production of benzyl acetate from glucose.},
author = {Ke Q, Liu C, Zhuang Y, Xue Y, Cui Z, Zhang C, Yin H, Liu T.},
journal = {Microb Cell Fact},
year = {2024},
doi = {10.1186/s12934-024-02513-y},
pmid = {39223542}
}
@article{lin232477,
title = {Harnessing biocatalysis as a green tool in antibiotic synthesis and discovery.},
author = {Fernandes GFS, Kim SH, Castagnolo D.},
journal = {RSC Adv},
year = {2024},
doi = {10.1039/d4ra04824e},
pmid = {39318457}
}
@article{lin332980,
title = {A Quantum Mechanical Approach to The Mechanism of Asymmetric Synthesis of Chiral Amine by Imine Reductase from Stackebrandtia Nassauensis.},
author = {Kopar M, Senyurt Tuzun N.},
journal = {Chempluschem},
year = {2025},
doi = {10.1002/cplu.202400606},
pmid = {39434680}
}
@article{lin333065,
title = {An Overview of Microorganisms Immobilized in a Gel Structure for the Production of Precursors, Antibiotics, and Valuable Products.},
author = {Berillo D, Malika T, Baimakhanova BB, Sadanov AK, Berezin VE, Trenozhnikova LP, Baimakhanova GB, Amangeldi AA, Kerimzhanova B.},
journal = {Gels},
year = {2024},
doi = {10.3390/gels10100646},
pmid = {39451299}
}
@article{lin332972,
title = {Biocatalytic Generation of Trifluoromethyl Radicals by Nonheme Iron Enzymes for Enantioselective Alkene Difunctionalization.},
author = {Zhang JG, Huls AJ, Palacios PM, Guo Y, Huang X.},
journal = {J Am Chem Soc},
year = {2024},
doi = {10.1021/jacs.4c14310},
pmid = {39636656}
}
@article{lin332986,
title = {Current Knowledge on CRISPR Strategies Against Antimicrobial-Resistant Bacteria.},
author = {de la Fuente Tagarro C, Martin-Gonzalez D, De Lucas A, Bordel S, Santos-Beneit F.},
journal = {Antibiotics (Basel)},
year = {2024},
doi = {10.3390/antibiotics13121141},
pmid = {39766530}
}
@article{lin232474,
title = {In silico identification of silent primycin biosynthetic gene clusters within the family Pseudonocardiaceae.},
author = {Kovacs-Valasek M, Fekete C, Kovacs-Valasek A.},
journal = {Heliyon},
year = {2025},
doi = {10.1016/j.heliyon.2024.e41065},
pmid = {39801987}
}
@article{lin333026,
title = {Polymeric Anti-Antibiotic Microparticles to Prevent Antibiotic Resistance Evolution.},
author = {Koshani R, Yeh SL, He Z, Narasimhalu N, Vom Steeg LG, Sim DG, Woods RJ, Read AF, Sheikhi A.},
journal = {Small},
year = {2025},
doi = {10.1002/smll.202407549},
pmid = {39828608}
}
@article{lin333011,
title = {From Cure to Crisis: Understanding the Evolution of Antibiotic-Resistant Bacteria in Human Microbiota.},
author = {Tahmasebi H, Arjmand N, Monemi M, Babaeizad A, Alibabaei F, Alibabaei N, Bahar A, Oksenych V, Eslami M.},
journal = {Biomolecules},
year = {2025},
doi = {10.3390/biom15010093},
pmid = {39858487}
}
@article{lin332970,
title = {Optimizing thermal and thermal-alkaline pretreatments for polylactic acid biodegradation by Amycolatopsis orientalis and Amycolatopsis thailandensis.},
author = {Yasin NM, Polanska M, Verbeken K, Van Impe JFM, Akkermans S.},
journal = {Bioresour Technol},
year = {2025},
doi = {10.1016/j.biortech.2025.132114},
pmid = {39870143}
}
@article{lin332979,
title = {Production of aromatic amino acids and their derivatives by Escherichia coli and Corynebacterium glutamicum.},
author = {Hirasawa T, Satoh Y, Koma D.},
journal = {World J Microbiol Biotechnol},
year = {2025},
doi = {10.1007/s11274-025-04264-3},
pmid = {39915353}
}
@article{lin333215,
title = {Unveiling the substrate specificity of the ABC transporter Tba and its role in glycopeptide biosynthesis.},
author = {Gericke N, Beqaj D, Kronenberger T, Kulik A, Gavriilidou A, Franz-Wachtel M, Schoppmeier U, Harbig T, Rapp J, Grin I, Ziemert N, Link H, Nieselt K, Macek B, Wohlleben W, Stegmann E, Wagner S.},
journal = {iScience},
year = {2025},
doi = {10.1016/j.isci.2025.112135},
pmid = {40171492}
}
@article{lin332966,
title = {Enzymatic degradation of polylactic acid using a serine protease from Amycolatopsis orientalis: characterization and degradation mechanism.},
author = {Zhang W, Li C, Liang H, Wang Z.},
journal = {Int J Biol Macromol},
year = {2025},
doi = {10.1016/j.ijbiomac.2025.144410},
pmid = {40398774}
}
@article{lin232475,
title = {Revisiting D-Acylases for D-Amino Acid Production.},
author = {Martinez-Rodriguez S, Gavira JA.},
journal = {Microb Biotechnol},
year = {2025},
doi = {10.1111/1751-7915.70179},
pmid = {40491232}
}
@article{lin332967,
title = {Directed Evolution of Copper-Substituted Nonheme Enzymes for Enantioselective Alkene Oxytrifluoromethylation.},
author = {Zhang JG, Huang X.},
journal = {J Am Chem Soc},
year = {2025},
doi = {10.1021/jacs.4c18532},
pmid = {40762475}
}
@article{lin332969,
title = {Biocatalytic Olefin Difunctionalization for Synthesis of Chiral 2-Azidoamines Using Nonheme Iron Enzymes.},
author = {Huls AJ, Soler J, Su Y, Yang Y, Garcia-Borras M, Huang X.},
journal = {Angew Chem Int Ed Engl},
year = {2025},
doi = {10.1002/anie.202423403},
pmid = {40785128}
}
@article{lin332983,
title = {Functionalizing Nisin with a Sugar Moiety Improves Its Solubility and Results in an Altered Antibacterial Spectrum and Mode of Action.},
author = {Guo L, Kuipers OP, Broos J.},
journal = {ACS Synth Biol},
year = {2025},
doi = {10.1021/acssynbio.5c00353},
pmid = {40792558}
}
@article{lin332968,
title = {Reprogramming nonheme iron enzymes for abiotic alkene trifluoromethylazidation.},
author = {Zhang JG, Huang X.},
journal = {Methods Enzymol},
year = {2025},
doi = {10.1016/bs.mie.2025.06.041},
pmid = {41047206}
}
@article{lin332971,
title = {The Roles of Carbon-Nitrogen Synergy and Phosphate Regulation in Producing Higher Yield of Vancomycin by Amycolatopsis orientalis.},
author = {Mani V, Jeyachandran S, Aman M.},
journal = {Microbiologyopen},
year = {2025},
doi = {10.1002/mbo3.70072},
pmid = {41159273}
}