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title = {Paraprevotella clara gen. nov., sp. nov. and Paraprevotella xylaniphila sp. nov., members of the family 'Prevotellaceae' isolated from human faeces.},
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title = {Diversity and abundance of the bacterial 16S rRNA gene sequences in forestomach of alpacas (Lama pacos) and sheep (Ovis aries).},
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journal = {Anaerobe},
year = {2010},
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title = {Effect of antimicrobial growth promoter administration on the intestinal microbiota of beef cattle.},
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journal = {Gut Pathog},
year = {2013},
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@article{lin223688,
title = {Molecular diversity of rumen bacterial communities from tannin-rich and fiber-rich forage fed domestic Sika deer (Cervus nippon) in China.},
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journal = {BMC Microbiol},
year = {2013},
doi = {10.1186/1471-2180-13-151},
pmid = {23834656}
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@article{lin223687,
title = {l-Galactose metabolism in Bacteroides vulgatus from the human gut microbiota.},
author = {Hobbs ME, Williams HJ, Hillerich B, Almo SC, Raushel FM.},
journal = {Biochemistry},
year = {2014},
doi = {10.1021/bi500656m},
pmid = {24963813}
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@article{lin223681,
title = {CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.},
author = {Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW.},
journal = {Genome Res},
year = {2015},
doi = {10.1101/gr.186072.114},
pmid = {25977477}
}
@article{lin223626,
title = {Alterations and correlations of the gut microbiome, metabolism and immunity in patients with primary biliary cirrhosis.},
author = {Lv LX, Fang DQ, Shi D, Chen DY, Yan R, Zhu YX, Chen YF, Shao L, Guo FF, Wu WR, Li A, Shi HY, Jiang XW, Jiang HY, Xiao YH, Zheng SS, Li LJ.},
journal = {Environ Microbiol},
year = {2016},
doi = {10.1111/1462-2920.13401},
pmid = {27243236}
}
@article{lin223651,
title = {Butyricimonas phoceensis sp. nov., a new anaerobic species isolated from the human gut microbiota of a French morbidly obese patient.},
author = {Togo AH, Diop A, Dubourg G, Nguyen TT, Andrieu C, Caputo A, Couderc C, Fournier PE, Maraninchi M, Valero R, Raoult D, Million M.},
journal = {New Microbes New Infect},
year = {2016},
doi = {10.1016/j.nmni.2016.07.010},
pmid = {27668083}
}
@article{lin223685,
title = {Prior Dietary Practices and Connections to a Human Gut Microbial Metacommunity Alter Responses to Diet Interventions.},
author = {Griffin NW, Ahern PP, Cheng J, Heath AC, Ilkayeva O, Newgard CB, Fontana L, Gordon JI.},
journal = {Cell Host Microbe},
year = {2017},
doi = {10.1016/j.chom.2016.12.006},
pmid = {28041931}
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@article{lin223680,
title = {Carbohydrate Staple Food Modulates Gut Microbiota of Mongolians in China.},
author = {Li J, Hou Q, Zhang J, Xu H, Sun Z, Menghe B, Zhang H.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.00484},
pmid = {28377764}
}
@article{lin223677,
title = {Metagenomic analysis of bacterial community structure and diversity of lignocellulolytic bacteria in Vietnamese native goat rumen.},
author = {Do TH, Dao TK, Nguyen KHV, Le NG, Nguyen TMP, Le TL, Phung TN, van Straalen NM, Roelofs D, Truong NH.},
journal = {Asian-Australas J Anim Sci},
year = {2018},
doi = {10.5713/ajas.17.0174},
pmid = {28920414}
}
@article{lin223682,
title = {Ginsenosides Rb3 and Rd reduce polyps formation while reinstate the dysbiotic gut microbiota and the intestinal microenvironment in ApcMin/+ mice.},
author = {Huang G, Khan I, Li X, Chen L, Leong W, Ho LT, Hsiao WLW.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/s41598-017-12644-5},
pmid = {28970547}
}
@article{lin223660,
title = {Moving beyond microbiome-wide associations to causal microbe identification.},
author = {Surana NK, Kasper DL.},
journal = {Nature},
year = {2017},
doi = {10.1038/nature25019},
pmid = {29211710}
}
@article{lin223683,
title = {The application of rumen simulation technique (RUSITEC) for studying dynamics of the bacterial community and metabolome in rumen fluid and the effects of a challenge with Clostridium perfringens.},
author = {Wetzels SU, Eger M, Burmester M, Kreienbrock L, Abdulmawjood A, Pinior B, Wagner M, Breves G, Mann E.},
journal = {PLoS One},
year = {2018},
doi = {10.1371/journal.pone.0192256},
pmid = {29415046}
}
@article{lin223678,
title = {Responses of Intestinal Mucosal Barrier Functions of Rats to Simulated Weightlessness.},
author = {Jin M, Zhang H, Zhao K, Xu C, Shao D, Huang Q, Shi J, Yang H.},
journal = {Front Physiol},
year = {2018},
doi = {10.3389/fphys.2018.00729},
pmid = {29962963}
}
@article{lin223650,
title = {Hypergravity disrupts murine intestinal microbiota.},
author = {Alauzet C, Cunat L, Wack M, Lozniewski A, Busby H, Agrinier N, Cailliez-Grimal C, Frippiat JP.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-45153-8},
pmid = {31253829}
}
@article{lin223657,
title = {Human gut bacteria contain acquired interbacterial defence systems.},
author = {Ross BD, Verster AJ, Radey MC, Schmidtke DT, Pope CE, Hoffman LR, Hajjar AM, Peterson SB, Borenstein E, Mougous JD.},
journal = {Nature},
year = {2019},
doi = {10.1038/s41586-019-1708-z},
pmid = {31666699}
}
@article{lin223684,
title = {Changes to the gut microbiota induced by losartan contributes to its antihypertensive effects.},
author = {Robles-Vera I, Toral M, de la Visitacion N, Sanchez M, Gomez-Guzman M, Munoz R, Algieri F, Vezza T, Jimenez R, Galvez J, Romero M, Redondo JM, Duarte J.},
journal = {Br J Pharmacol},
year = {2020},
doi = {10.1111/bph.14965},
pmid = {31883108}
}
@article{lin223636,
title = {Altered gut microbiome composition in patients with Vogt-Koyanagi-Harada disease.},
author = {Ye Z, Wu C, Zhang N, Du L, Cao Q, Huang X, Tang J, Wang Q, Li F, Zhou C, Xu Q, Xiong X, Kijlstra A, Qin N, Yang P.},
journal = {Gut Microbes},
year = {2020},
doi = {10.1080/19490976.2019.1700754},
pmid = {31928124}
}
@article{lin223672,
title = {Bifidobacterium longum R0175 Protects Rats against d-Galactosamine-Induced Acute Liver Failure.},
author = {Wang K, Lv L, Yan R, Wang Q, Jiang H, Wu W, Li Y, Ye J, Wu J, Yang L, Bian X, Jiang X, Lu Y, Xie J, Wang Q, Shen J, Li L.},
journal = {mSphere},
year = {2020},
doi = {10.1128/msphere.00791-19},
pmid = {31996423}
}
@article{lin223668,
title = {Breast-Milk Microbiota Linked to Celiac Disease Development in Children: A Pilot Study From the PreventCD Cohort.},
author = {Benitez-Paez A, Olivares M, Szajewska H, Piescik-Lech M, Polanco I, Castillejo G, Nunez M, Ribes-Koninckx C, Korponay-Szabo IR, Koletzko S, Meijer CR, Mearin ML, Sanz Y.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01335},
pmid = {32655529}
}
@article{lin223674,
title = {Effects of Diet-Modulated Autologous Fecal Microbiota Transplantation on Weight Regain.},
author = {Rinott E, Youngster I, Yaskolka Meir A, Tsaban G, Zelicha H, Kaplan A, Knights D, Tuohy K, Fava F, Scholz MU, Ziv O, Rubin E, Tirosh A, Rudich A, Bluher M, Stumvoll M, Ceglarek U, Clement K, Koren O, Wang DD, Hu FB, Stampfer MJ, Shai I.},
journal = {Gastroenterology},
year = {2021},
doi = {10.1053/j.gastro.2020.08.041},
pmid = {32860791}
}
@article{lin223675,
title = {Elucidating the gut microbiota composition and the bioactivity of immunostimulatory commensals for the optimization of immune checkpoint inhibitors.},
author = {Daillere R, Routy B, Goubet AG, Cogdill A, Ferrere G, Alves-Costa Silva C, Fluckiger A, Ly P, Haddad Y, Pizzato E, Thelemaque C, Fidelle M, Mazzenga M, Roberti MP, Melenotte C, Liu P, Terrisse S, Kepp O, Kroemer G, Zitvogel L, Derosa L.},
journal = {Oncoimmunology},
year = {2020},
doi = {10.1080/2162402x.2020.1794423},
pmid = {32934888}
}
@article{lin223662,
title = {Ileal immune tonus is a prognosis marker of proximal colon cancer in mice and patients.},
author = {Picard M, Yonekura S, Slowicka K, Petta I, Rauber C, Routy B, Richard C, Iebba V, Tidjani Alou M, Becharef S, Ly P, Pizzato E, Lehmann CHK, Amon L, Klein C, Opolon P, Gomperts Boneca I, Scoazec JY, Hollebecque A, Malka D, Ghiringhelli F, Dudziak D, Berx G, Vereecke L, van Loo G, Kroemer G, Zitvogel L, Roberti MP.},
journal = {Cell Death Differ},
year = {2021},
doi = {10.1038/s41418-020-00684-w},
pmid = {33262469}
}
@article{lin223643,
title = {Differences in Gut Microbiome in Hospitalized Immunocompetent vs. Immunocompromised Children, Including Those With Sickle Cell Disease.},
author = {Mohandas S, Soma VL, Tran TDB, Sodergren E, Ambooken T, Goldman DL, Weinstock G, Herold BC.},
journal = {Front Pediatr},
year = {2020},
doi = {10.3389/fped.2020.583446},
pmid = {33282798}
}
@article{lin223638,
title = {Dysbiosis Triggers ACF Development in Genetically Predisposed Subjects.},
author = {De Santis S, Liso M, Vacca M, Verna G, Cavalcanti E, Coletta S, Calabrese FM, Eri R, Lippolis A, Armentano R, Mastronardi M, De Angelis M, Chieppa M.},
journal = {Cancers (Basel)},
year = {2021},
doi = {10.3390/cancers13020283},
pmid = {33466665}
}
@article{lin223667,
title = {Diet Transition from High-Forage to High-Concentrate Alters Rumen Bacterial Community Composition, Epithelial Transcriptomes and Ruminal Fermentation Parameters in Dairy Cows.},
author = {Ramos SC, Jeong CD, Mamuad LL, Kim SH, Kang SH, Kim ET, Cho YI, Lee SS, Lee SS.},
journal = {Animals (Basel)},
year = {2021},
doi = {10.3390/ani11030838},
pmid = {33809588}
}
@article{lin223648,
title = {Holstein and Jersey Steers Differ in Rumen Microbiota and Enteric Methane Emissions Even Fed the Same Total Mixed Ration.},
author = {Islam M, Kim SH, Ramos SC, Mamuad LL, Son AR, Yu Z, Lee SS, Cho YI, Lee SS.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.601061},
pmid = {33868186}
}
@article{lin223671,
title = {Vaginal Microbiome Composition in Early Pregnancy and Risk of Spontaneous Preterm and Early Term Birth Among African American Women.},
author = {Dunlop AL, Satten GA, Hu YJ, Knight AK, Hill CC, Wright ML, Smith AK, Read TD, Pearce BD, Corwin EJ.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.641005},
pmid = {33996627}
}
@article{lin223614,
title = {Pseudoprevotella muciniphila gen. nov., sp. nov., a mucin-degrading bacterium attached to the bovine rumen epithelium.},
author = {Na SW, Chun BH, Beak SH, Khan SA, Haque MN, Lee JS, Jeon CO, Lee SS, Baik M.},
journal = {PLoS One},
year = {2021},
doi = {10.1371/journal.pone.0251791},
pmid = {34014990}
}
@article{lin223664,
title = {Plant-Based Diet Index and Metabolic Risk in Men: Exploring the Role of the Gut Microbiome.},
author = {Li Y, Wang DD, Satija A, Ivey KL, Li J, Wilkinson JE, Li R, Baden M, Chan AT, Huttenhower C, Rimm EB, Hu FB, Sun Q.},
journal = {J Nutr},
year = {2021},
doi = {10.1093/jn/nxab175},
pmid = {34114015}
}
@article{lin223642,
title = {A Novel Family of RNA-Binding Proteins Regulate Polysaccharide Metabolism in Bacteroides thetaiotaomicron.},
author = {Adams AND, Azam MS, Costliow ZA, Ma X, Degnan PH, Vanderpool CK.},
journal = {J Bacteriol},
year = {2021},
doi = {10.1128/jb.00217-21},
pmid = {34251866}
}
@article{lin223644,
title = {A Metagenome-Wide Association Study of the Gut Microbiome and Metabolic Syndrome.},
author = {Qin Q, Yan S, Yang Y, Chen J, Li T, Gao X, Yan H, Wang Y, Wang J, Wang S, Ding S.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.682721},
pmid = {34335505}
}
@article{lin223658,
title = {Composition and Functions of the Gut Microbiome in Pediatric Obesity: Relationships with Markers of Insulin Resistance.},
author = {Orsso CE, Peng Y, Deehan EC, Tan Q, Field CJ, Madsen KL, Walter J, Prado CM, Tun HM, Haqq AM.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9071490},
pmid = {34361925}
}
@article{lin223656,
title = {Positive Synergistic Effects of Quercetin and Rice Bran on Human Gut Microbiota Reduces Enterobacteriaceae Family Abundance and Elevates Propionate in a Bioreactor Model.},
author = {Ghimire S, Wongkuna S, Sankaranarayanan R, Ryan EP, Bhat GJ, Scaria J.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.751225},
pmid = {34659185}
}
@article{lin223641,
title = {Alterations in Gut Microbiome Composition and Function in Irritable Bowel Syndrome and Increased Probiotic Abundance with Daily Supplementation.},
author = {Phan J, Nair D, Jain S, Montagne T, Flores DV, Nguyen A, Dietsche S, Gombar S, Cotter P.},
journal = {mSystems},
year = {2021},
doi = {10.1128/msystems.01215-21},
pmid = {34726487}
}
@article{lin223652,
title = {The Effects of Moderate Alcohol Consumption on Circulating Metabolites and Gut Microbiota in Patients With Coronary Artery Disease.},
author = {Zhao X, Zhou R, Li H, Fan Y, Sun Y, Hu X, Zhang S.},
journal = {Front Cardiovasc Med},
year = {2021},
doi = {10.3389/fcvm.2021.767692},
pmid = {34796220}
}
@article{lin223666,
title = {The Immune Barrier of Porcine Uterine Mucosa Differs Dramatically at Proliferative and Secretory Phases and Could Be Positively Modulated by Colonizing Microbiota.},
author = {Han D, Sun P, Hu Y, Wang J, Hua G, Chen J, Shao C, Tian F, Darwish HYA, Tai Y, Yang X, Chang J, Ma Y.},
journal = {Front Immunol},
year = {2021},
doi = {10.3389/fimmu.2021.750808},
pmid = {34917075}
}
@article{lin223617,
title = {Genomic Insights into the Distribution of Peptidases and Proteolytic Capacity among Prevotella and Paraprevotella Species.},
author = {Patra AK, Yu Z.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.02185-21},
pmid = {35377228}
}
@article{lin223637,
title = {Phenotyping of Fecal Microbiota of Winnie, a Rodent Model of Spontaneous Chronic Colitis, Reveals Specific Metabolic, Genotoxic, and Pro-inflammatory Properties.},
author = {Tala A, Guerra F, Resta SC, Calcagnile M, Barca A, Tredici SM, De Donno MD, Vacca M, Liso M, Chieppa M, De Angelis M, Verri T, Bozzetti MG, Bucci C, Alifano P.},
journal = {Inflammation},
year = {2022},
doi = {10.1007/s10753-022-01706-0},
pmid = {35732858}
}
@article{lin223654,
title = {Metagenomic analysis reveals crosstalk between gut microbiota and glucose-lowering drugs targeting the gastrointestinal tract in Chinese patients with type 2 diabetes: a 6 month, two-arm randomised trial.},
author = {Zhang X, Ren H, Zhao C, Shi Z, Qiu L, Yang F, Zhou X, Han X, Wu K, Zhong H, Li Y, Li J, Ji L.},
journal = {Diabetologia},
year = {2022},
doi = {10.1007/s00125-022-05768-5},
pmid = {35930018}
}
@article{lin223639,
title = {Microbial Proteins in Stomach Biopsies Associated with Gastritis, Ulcer, and Gastric Cancer.},
author = {Aziz S, Rasheed F, Akhter TS, Zahra R, Konig S.},
journal = {Molecules},
year = {2022},
doi = {10.3390/molecules27175410},
pmid = {36080177}
}
@article{lin223653,
title = {Associations of dietary diversity with the gut microbiome, fecal metabolites, and host metabolism: results from 2 prospective Chinese cohorts.},
author = {Xiao C, Wang JT, Su C, Miao Z, Tang J, Ouyang Y, Yan Y, Jiang Z, Fu Y, Shuai M, Gou W, Xu F, Yu EY, Liang Y, Liang X, Tian Y, Wang J, Huang F, Zhang B, Wang H, Chen YM, Zheng JS.},
journal = {Am J Clin Nutr},
year = {2022},
doi = {10.1093/ajcn/nqac178},
pmid = {36100971}
}
@article{lin223670,
title = {Drivers and determinants of strain dynamics following fecal microbiota transplantation.},
author = {Schmidt TSB, Li SS, Maistrenko OM, Akanni W, Coelho LP, Dolai S, Fullam A, Glazek AM, Hercog R, Herrema H, Jung F, Kandels S, Orakov A, Thielemann R, von Stetten M, Van Rossum T, Benes V, Borody TJ, de Vos WM, Ponsioen CY, Nieuwdorp M, Bork P.},
journal = {Nat Med},
year = {2022},
doi = {10.1038/s41591-022-01913-0},
pmid = {36109636}
}
@article{lin223634,
title = {Deep metagenomic characterization of gut microbial community and function in preeclampsia.},
author = {Lv LJ, Li SH, Wen JY, Wang GY, Li H, He TW, Lv QB, Xiao MC, Duan HL, Chen MC, Yi ZT, Yan QL, Yin AH.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.933523},
pmid = {36189343}
}
@article{lin223625,
title = {Comparative Metagenomics and Metabolomes Reveals Abnormal Metabolism Activity Is Associated with Gut Microbiota in Alzheimer's Disease Mice.},
author = {Sun P, Zhu H, Li X, Shi W, Guo Y, Du X, Zhang L, Su L, Qin C.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms231911560},
pmid = {36232865}
}
@article{lin223659,
title = {Long-Term Lactulose Administration Improves Dysbiosis Induced by Antibiotic and C. difficile in the PathoGutTM SHIME Model.},
author = {Calatayud M, Duysburgh C, Van den Abbeele P, Franckenstein D, Kuchina-Koch A, Marzorati M.},
journal = {Antibiotics (Basel)},
year = {2022},
doi = {10.3390/antibiotics11111464},
pmid = {36358119}
}
@article{lin223618,
title = {Identification of gut microbes associated with feed efficiency by daily-phase feeding strategy in growing-finishing pigs.},
author = {Jiang Q, Xie C, Chen L, Xiao H, Xie Z, Zhu X, Ma L, Yan X.},
journal = {Anim Nutr},
year = {2023},
doi = {10.1016/j.aninu.2022.09.005},
pmid = {36381065}
}
@article{lin223655,
title = {Co-fermented defatted rice bran alters gut microbiota and improves growth performance, antioxidant capacity, immune status and intestinal permeability of finishing pigs.},
author = {Su W, Jiang Z, Wang C, Zhang Y, Gong T, Wang F, Jin M, Wang Y, Lu Z.},
journal = {Anim Nutr},
year = {2022},
doi = {10.1016/j.aninu.2022.07.008},
pmid = {36382202}
}
@article{lin223673,
title = {The Role of the Microbiome on the Pathogenesis and Treatment of Colorectal Cancer.},
author = {Yu I, Wu R, Tokumaru Y, Terracina KP, Takabe K.},
journal = {Cancers (Basel)},
year = {2022},
doi = {10.3390/cancers14225685},
pmid = {36428777}
}
@article{lin223623,
title = {Gut microbiome is linked to functions of peripheral immune cells in transition cows during excessive lipolysis.},
author = {Gu F, Zhu S, Tang Y, Liu X, Jia M, Malmuthuge N, Valencak TG, McFadden JW, Liu JX, Sun HZ.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01492-3},
pmid = {36869370}
}
@article{lin223630,
title = {Gut microbiota associated with cryptococcal meningitis and dysbiosis caused by anti-fungal treatment.},
author = {Li H, Zhang L, Zhang K, Huang Y, Liu Y, Lu X, Liao W, Liu X, Zhang Q, Pan W.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1086239},
pmid = {36909846}
}
@article{lin223606,
title = {Effects of Tiaopi Xiezhuo decoction on constipation and gut dysbiosis in patients with peritoneal dialysis.},
author = {Peng Y, Zeng Y, Zheng T, Xie X, Wu J, Fu L, Lu F, Zhang, Chen Y, Liu X, Wang L.},
journal = {Pharm Biol},
year = {2023},
doi = {10.1080/13880209.2023.2193595},
pmid = {36994999}
}
@article{lin223615,
title = {Probio-X Relieves Symptoms of Hyperlipidemia by Regulating Patients' Gut Microbiome, Blood Lipid Metabolism, and Lifestyle Habits.},
author = {Wang H, Ma C, Li Y, Zhang L, A L, Yang C, Zhao F, Han H, Shang D, Yang F, Zhang Y, Zhang H, Sun Z, Guo R.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.04440-22},
pmid = {37022264}
}
@article{lin223635,
title = {Correlation of the gut microbiome and immune-related adverse events in gastrointestinal cancer patients treated with immune checkpoint inhibitors.},
author = {Zhang Y, Cheng S, Zou H, Han Z, Xie T, Zhang B, Dai D, Yin X, Liang Y, Kou Y, Tan Y, Shen L, Peng Z.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1099063},
pmid = {37051296}
}
@article{lin223640,
title = {Identifying Gut Microbiota associated with Gastrointestinal Symptoms upon Roux-en-Y Gastric Bypass.},
author = {Wijdeveld M, van Olst N, van der Vossen EWJ, de Brauw M, Acherman YIZ, de Goffau MC, Gerdes VEA, Nieuwdorp M.},
journal = {Obes Surg},
year = {2023},
doi = {10.1007/s11695-023-06610-6},
pmid = {37093508}
}
@article{lin223645,
title = {Insight into gut dysbiosis of patients with inflammatory bowel disease and ischemic colitis.},
author = {Dahal RH, Kim S, Kim YK, Kim ES, Kim J.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1174832},
pmid = {37250025}
}
@article{lin223633,
title = {Association between gut microbiota and gastrointestinal cancer: a two-sample bi-directional Mendelian randomization study.},
author = {Su Q, Jin C, Bo Z, Yang Y, Wang J, Wang J, Zhou J, Chen Y, Zeng H, Chen G, Wang Y.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1181328},
pmid = {37533836}
}
@article{lin223661,
title = {Glucose-lowering effects of a synbiotic combination containing Pediococcus acidilactici in C. elegans and mice.},
author = {Yavorov-Dayliev D, Milagro FI, Ayo J, Oneca M, Goyache I, Lopez-Yoldi M, Aranaz P.},
journal = {Diabetologia},
year = {2023},
doi = {10.1007/s00125-023-05981-w},
pmid = {37584728}
}
@article{lin223676,
title = {The Intestinal Microbiota in the Development of Chronic Liver Disease: Current Status.},
author = {Stojic J, Kukla M, Grgurevic I.},
journal = {Diagnostics (Basel)},
year = {2023},
doi = {10.3390/diagnostics13182960},
pmid = {37761327}
}
@article{lin223631,
title = {Prenatal Lead Exposure Is Associated with Reduced Abundance of Beneficial Gut Microbial Cliques in Late Childhood: An Investigation Using Microbial Co-Occurrence Analysis (MiCA).},
author = {Midya V, Lane JM, Gennings C, Torres-Olascoaga LA, Gregory JK, Wright RO, Arora M, Tellez-Rojo MM, Eggers S.},
journal = {Environ Sci Technol},
year = {2023},
doi = {10.1021/acs.est.3c04346},
pmid = {37878664}
}
@article{lin223665,
title = {Revealing the developmental characterization of rumen microbiome and its host in newly received cattle during receiving period contributes to formulating precise nutritional strategies.},
author = {Li Y, Mao K, Zang Y, Lu G, Qiu Q, Ouyang K, Zhao X, Song X, Xu L, Liang H, Qu M.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01682-z},
pmid = {37924150}
}
@article{lin223628,
title = {Functional host-specific adaptation of the intestinal microbiome in hominids.},
author = {Ruhlemann MC, Bang C, Gogarten JF, Hermes BM, Groussin M, Waschina S, Poyet M, Ulrich M, Akoua-Koffi C, Deschner T, Muyembe-Tamfum JJ, Robbins MM, Surbeck M, Wittig RM, Zuberbuhler K, Baines JF, Leendertz FH, Franke A.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-023-44636-7},
pmid = {38182626}
}
@article{lin223627,
title = {Multi-omics of the gut microbial ecosystem in patients with microsatellite-instability-high gastrointestinal cancer resistant to immunotherapy.},
author = {Cheng S, Han Z, Dai D, Li F, Zhang X, Lu M, Lu Z, Wang X, Zhou J, Li J, Guo X, Song P, Qiu C, Shen W, Zhang Q, Zhu N, Wang X, Tan Y, Kou Y, Yin X, Shen L, Peng Z.},
journal = {Cell Rep Med},
year = {2024},
doi = {10.1016/j.xcrm.2023.101355},
pmid = {38194971}
}
@article{lin223613,
title = {Vancomycin relieves tacrolimus-induced hyperglycemia by eliminating gut bacterial beta-glucuronidase enzyme activity.},
author = {Li P, Zhang R, Zhou J, Guo P, Liu Y, Shi S.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2310277},
pmid = {38332701}
}
@article{lin223649,
title = {Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices.},
author = {Huang KD, Amend L, Galvez EJC, Lesker TR, de Oliveira R, Bielecka A, Blanco-Miguez A, Valles-Colomer M, Ruf I, Pasolli E, Buer J, Segata N, Esser S, Strowig T, Kehrmann J.},
journal = {Cell Rep Med},
year = {2024},
doi = {10.1016/j.xcrm.2024.101426},
pmid = {38366600}
}
@article{lin223619,
title = {Multi-omic profiling reveals associations between the gut microbiome, host genome and transcriptome in patients with colorectal cancer.},
author = {Zou S, Yang C, Zhang J, Zhong D, Meng M, Zhang L, Chen H, Fang L.},
journal = {J Transl Med},
year = {2024},
doi = {10.1186/s12967-024-04984-4},
pmid = {38369542}
}
@article{lin223591,
title = {A consortium of Hordeum vulgare and gut microbiota against non-alcoholic fatty liver disease via data-driven analysis.},
author = {Lee SB, Gupta H, Min BH, Ganesan R, Sharma SP, Won SM, Jeong JJ, Cha MG, Kwon GH, Jeong MK, Hyun JY, Eom JA, Park HJ, Yoon SJ, Lee SY, Choi MR, Kim DJ, Oh KK, Suk KT.},
journal = {Artif Cells Nanomed Biotechnol},
year = {2024},
doi = {10.1080/21691401.2024.2347380},
pmid = {38687561}
}
@article{lin223629,
title = {Commensal microbiota-derived metabolite agmatine triggers inflammation to promote colorectal tumorigenesis.},
author = {Lu Y, Cui A, Zhang X.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2348441},
pmid = {38706224}
}
@article{lin223602,
title = {Knowledge graph-derived feed efficiency analysis via pig gut microbiota.},
author = {Zhang J, Jiang Q, Du Z, Geng Y, Hu Y, Tong Q, Song Y, Zhang HY, Yan X, Feng Z.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-64835-6},
pmid = {38886444}
}
@article{lin223663,
title = {A powerful machine learning approach to identify interactions of differentially abundant gut microbial subsets in patients with metastatic and non-metastatic pancreatic cancer.},
author = {Villani A, Fontana A, Panebianco C, Ferro C, Copetti M, Pavlovic R, Drago D, Fiorentini C, Terracciano F, Bazzocchi F, Canistro G, Pisati F, Maiello E, Latiano TP, Perri F, Pazienza V.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2375483},
pmid = {38972056}
}
@article{lin223669,
title = {Obesity-associated inflammation countered by a Mediterranean diet: the role of gut-derived metabolites.},
author = {Florkowski M, Abiona E, Frank KM, Brichacek AL.},
journal = {Front Nutr},
year = {2024},
doi = {10.3389/fnut.2024.1392666},
pmid = {38978699}
}
@article{lin223624,
title = {Gut microbiome in endometriosis: a cohort study on 1000 individuals.},
author = {Perez-Prieto I, Vargas E, Salas-Espejo E, Lull K, Canha-Gouveia A, Perez LA, Fontes J, Salumets A, Andreson R, Aasmets O, Estonian Biobank research team, Whiteson K, Org E, Altmae S.},
journal = {BMC Med},
year = {2024},
doi = {10.1186/s12916-024-03503-y},
pmid = {39020289}
}
@article{lin223647,
title = {The fecal microbiota of patients with primary biliary cholangitis (PBC) causes PBC-like liver lesions in mice and exacerbates liver damage in a mouse model of PBC.},
author = {Jiang H, Yu Y, Hu X, Du B, Shao Y, Wang F, Chen L, Yan R, Li L, Lv L.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2383353},
pmid = {39105259}
}
@article{lin223612,
title = {Investigating the association between gut microbiome and aortic aneurysm diseases: a bidirectional two-sample Mendelian randomization analysis.},
author = {Sun Y, Dong H, Sun C, Du D, Gao R, Voevoda M, Knyazev R, Wu N.},
journal = {Front Cell Infect Microbiol},
year = {2024},
doi = {10.3389/fcimb.2024.1406845},
pmid = {39139765}
}
@article{lin223595,
title = {Fecal Proteolytic Bacteria and Staphylococcal Superantigens Are Associated With Abdominal Pain Severity in Irritable Bowel Syndrome.},
author = {Quan R, Decraecker L, Appeltans I, Cuende-Estevez M, Van Remoortel S, Aguilera-Lizarraga J, Wang Z, Hicks G, Wykosky J, McLean P, Denadai-Souza A, Hussein H, Boeckxstaens GE.},
journal = {Am J Gastroenterol},
year = {2025},
doi = {10.14309/ajg.0000000000003042},
pmid = {39166748}
}
@article{lin223592,
title = {The causal association between gut microbiota and postpartum depression: a two-sample Mendelian randomization study.},
author = {Jin W, Li B, Wang L, Zhu L, Chai S, Hou R.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1415237},
pmid = {39286351}
}
@article{lin223597,
title = {Multi-omics analysis reveals the key factors involved in the severity of the Alzheimer's disease.},
author = {Meng L, Jin H, Yulug B, Altay O, Li X, Hanoglu L, Cankaya S, Coskun E, Idil E, Nogaylar R, Ozsimsek A, Shoaie S, Turkez H, Nielsen J, Zhang C, Boren J, Uhlen M, Mardinoglu A.},
journal = {Alzheimers Res Ther},
year = {2024},
doi = {10.1186/s13195-024-01578-6},
pmid = {39358810}
}
@article{lin223632,
title = {Species- and subspecies-level characterization of health-associated bacterial consortia that colonize the human gut during infancy.},
author = {Minot SS, Mayer-Blackwell K, Fiore-Gartland A, Johnson A, Self S, Bhatti P, Yao L, Liu L, Sun X, Jinfa Y, Kublin J.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2414975},
pmid = {39428758}
}
@article{lin223589,
title = {Exploring bacterial metabolites in microbe-human host dialogue and their therapeutic potential in Alzheimer's diseases.},
author = {Singh SD, Bharali P, Nagamani S.},
journal = {Mol Divers},
year = {2025},
doi = {10.1007/s11030-024-11028-y},
pmid = {39499489}
}
@article{lin223590,
title = {The molecular mechanisms of steroid hormone effects on cognitive function.},
author = {Nguyen HD, Vu GH, Kim WK.},
journal = {Arch Gerontol Geriatr},
year = {2025},
doi = {10.1016/j.archger.2024.105684},
pmid = {39549628}
}
@article{lin223604,
title = {Carotenoids from Halophilic Archaea: A Novel Approach to Improve Egg Quality and Cecal Microbiota in Laying Hens.},
author = {Dou X, Zhang G, Tang H, Chen X, Chen B, Mei Y, Jiao H, Ren M.},
journal = {Animals (Basel)},
year = {2024},
doi = {10.3390/ani14233470},
pmid = {39682435}
}
@article{lin223608,
title = {Symbiotic microbial population composition of Apolygus lucorum under temperature and pesticide pressures.},
author = {Ma M, Xue H, Zhu X, Wang L, Niu L, Luo J, Cui J, Gao X.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1485708},
pmid = {39703707}
}
@article{lin223598,
title = {Diet-Gut Microbiota Relations: Critical Appraisal of Evidence From Studies Using Metagenomics.},
author = {Lotankar M, Houttu N, Mokkala K, Laitinen K.},
journal = {Nutr Rev},
year = {2025},
doi = {10.1093/nutrit/nuae192},
pmid = {39718602}
}
@article{lin223622,
title = {Short-chain fatty acids play a key role in antibody response to SARS-CoV-2 infection in people living with HIV.},
author = {Pan J, Zhang X, Shi D, Tian X, Xu L, Lu X, Dong M, Yao P, Pan Z, Ling Z, Wu N, Yao H.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-82596-0},
pmid = {39732792}
}
@article{lin223596,
title = {Exploring the causal associations of the gut microbiota and plasma metabolites with ovarian cancer: an approach of mendelian randomization analysis combined with network pharmacology and molecular docking.},
author = {Guo J, Wang C, Li H, Ding C.},
journal = {J Ovarian Res},
year = {2025},
doi = {10.1186/s13048-025-01610-9},
pmid = {39948579}
}
@article{lin223616,
title = {Effects of Lacticaseibacillus paracasei K56 on perceived stress among pregraduate students: a double-blind, randomized, placebo-controlled trial.},
author = {Guan Y, Zhu R, Zhao W, Wang L, You L, Zeng Z, Jiang Q, Zhu Z, Gou J, Zhang Q, Guo J, Li K, Zhao L, Li Y, Wang P, Fang B, Hung W, He J, Zhang L, Wang R, He J.},
journal = {Front Nutr},
year = {2025},
doi = {10.3389/fnut.2025.1544713},
pmid = {40144570}
}
@article{lin223611,
title = {Gut commensal bacterium Bacteroides vulgatus exacerbates helminth-induced cardiac fibrosis through succinate accumulation.},
author = {Wang J, Yin J, Liu X, Liu Y, Jin X.},
journal = {PLoS Pathog},
year = {2025},
doi = {10.1371/journal.ppat.1013069},
pmid = {40238740}
}
@article{lin223610,
title = {Investigating Plasma Metabolomics and Gut Microbiota Changes Associated With Parkinson Disease: A Focus on Caffeine Metabolism.},
author = {Chen CC, Chiu JY, Tan AH, Toh TS, Lim SY, Tan EK, Pettersson S, Hsu CC, Liou JM, Wu MS, Hsu CL, Lin CH.},
journal = {Neurology},
year = {2025},
doi = {10.1212/wnl.0000000000213592},
pmid = {40273394}
}
@article{lin223588,
title = {Intake of neutral core human milk oligosaccharides (HMOs) during early life improves long-term bone quality.},
author = {Bonnet N, Schmidt FN, Baruchet M, Migliavacca E, Ramos-Nieves M, Favre L, Brassart D, Mletzko K, Busse B, Koopmans SJ, Horcajada MN.},
journal = {J Nutr Biochem},
year = {2025},
doi = {10.1016/j.jnutbio.2025.109968},
pmid = {40403855}
}
@article{lin223620,
title = {A molecular conveyor belt-associated protein controls the rotational direction of the bacterial type 9 secretion system.},
author = {Trivedi A, Miratsky JA, Henderson EC, Singharoy A, Shrivastava A.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.01125-25},
pmid = {40511966}
}
@article{lin223605,
title = {The radioprotective role of human Alistipes onderdonkii identified by multi-omic analysis in patients with prostate cancer.},
author = {Yu Y, Park S, Jeon J, Lee SH, Kim H, Seo D, Park M, Park E, Kim JY, Cho SJ, Jo S, Park G, Yang JY.},
journal = {Discov Oncol},
year = {2025},
doi = {10.1007/s12672-025-02992-4},
pmid = {40531331}
}
@article{lin223600,
title = {Maternal oral sodium propionate supplementation restores gut integrity and mitigates stress-induced metabolic and behavioral outcomes in offspring.},
author = {Bagaev A, Sur D, Agranyoni O, Pe'er N, Savita BK, Rocha BGS, Thanos PK, Navon-Venezia S, Pinhasov A.},
journal = {Transl Psychiatry},
year = {2025},
doi = {10.1038/s41398-025-03436-x},
pmid = {40634281}
}
@article{lin223594,
title = {Influence of the Gut Microbiota on Acute Ischemic Stroke Functional Outcomes at Three Months.},
author = {Lledos M, Prats-Sanchez L, Muino E, Cullell N, Llucia-Carol L, Carcel-Marquez J, Gallego-Fabrega C, Martin-Campos JM, Marin R, Aguilera-Simon A, Guasch-Jimenez M, Ezcurra-Diaz G, Camps-Renom P, Del Mar Freijo M, Marti-Fabregas J, Fernandez-Cadenas I.},
journal = {Eur J Neurol},
year = {2025},
doi = {10.1111/ene.70265},
pmid = {40686474}
}
@article{lin223609,
title = {3-O-Acetyl-11-Keto-beta-Boswellic Acid Suppresses Colitis-Associated Colorectal Cancer by Inhibiting the NF-Kb Signaling Pathway and Remodeling Gut Microbiota.},
author = {Xu F, Li W, Zheng XJ, Hao Y, Yang YH, Yang H, Zhang S, Cao WX, Li XX, Zhang X, Du GH, Ji TF, Wang JH.},
journal = {Oncol Res},
year = {2025},
doi = {10.32604/or.2025.062386},
pmid = {40746878}
}
@article{lin223621,
title = {Longitudinal big biological data in the AI era.},
author = {Mardinoglu A, Turkez H, Shong M, Srinivasulu VP, Nielsen J, Palsson BO, Hood L, Uhlen M.},
journal = {Mol Syst Biol},
year = {2025},
doi = {10.1038/s44320-025-00134-0},
pmid = {40764831}
}
@article{lin223603,
title = {Gut microbiota-mediated modulation of host amino acid availability and metabolism.},
author = {Han Z, Zhao L, Hu Q, Hung I, Liu C, Liu S, Mei X, Zeng X, Bin P, Wang J.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2552345},
pmid = {40878016}
}
@article{lin223599,
title = {16S rDNA-based detection technology: use in lambs infected with Nematodirus oiratianus to analyze changes in intestinal flora.},
author = {Li SY, Hou B, Wuyun Q, Eerdeni Z, Zang D, Hasi S.},
journal = {Parasite},
year = {2025},
doi = {10.1051/parasite/2025052},
pmid = {40953252}
}
@article{lin223679,
title = {Artificial intelligence-driven multi-omics approaches in Alzheimer's disease: Progress, challenges, and future directions.},
author = {Ren F, Wei J, Chen Q, Hu M, Yu L, Mi J, Zhou X, Qin D, Wu J, Wu A.},
journal = {Acta Pharm Sin B},
year = {2025},
doi = {10.1016/j.apsb.2025.07.030},
pmid = {41049729}
}
@article{lin223607,
title = {Baseline intestinal microbiota composition influences response to a real-world dietary fiber intervention.},
author = {Hoffmann Sarda FA, Giuntini EB, Oliveira A, Souza GS, Prado SBR, Taddei CR, Tadini CC, Bittinger K, Bushman FD, Menezes EW, Hoffmann C.},
journal = {NPJ Biofilms Microbiomes},
year = {2025},
doi = {10.1038/s41522-025-00817-4},
pmid = {41198696}
}
@article{lin223587,
title = {Oligosaccharides with different glycosidic bonds regulate gut microbiota: differential modulation of bacterial and fungal communities and their metabolism in vitro.},
author = {Lu X, Zou J, Feng X, Han G, Zhu L, Chen Y, Yang Y, Jin J, Ji X, Zhao L.},
journal = {Food Res Int},
year = {2025},
doi = {10.1016/j.foodres.2025.117481},
pmid = {41214979}
}
@article{lin223593,
title = {Association between gut microbiota composition and physical functioning in patients with knee osteoarthritis: a machine learning study.},
author = {de Sire A, Mancuso E, Marotta N, Massimino M, Zito R, Averta C, Bartalotta I, Palummo A, Cerantonio A, Citrigno L, Soverini M, Castagnetti A, Mannino GC, Ammendolia A, Andreozzi F.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-24500-y},
pmid = {41258193}
}
@article{lin223601,
title = {Fecal short-chain fatty acids vary by sex and amyloid status.},
author = {Kuehn JF, Zhang Q, Heston MB, Kang JW, Harding SJ, Davenport-Sis NJ, Peter DC, Kerby RL, Vemuganti V, Schiffmann EC, Tallon MM, Harpt J, Hajra A, Wheeler JL, Shankar S, Mickol A, Zemberi J, Chow H, Zhang E, Clements E, Noughani H, Forst A, Everitt G, Kollmorgen G, Quijano-Rubio C, Christian BT, Carlsson CM, Johnson SC, Asthana S, Zetterberg H, Blennow K, Ulland TK, Rey FE, Bendlin BB.},
journal = {Alzheimers Dement},
year = {2025},
doi = {10.1002/alz.70877},
pmid = {41273231}
}