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title = {Evaluation of Extraction Methods for Clinical Metagenomic Assay.},
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title = {First report of peritonitis caused by the vancomycin-resistant coccus Pediococcus pentosaceus in a patient on continuous ambulatory peritoneal dialysis.},
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@article{lin202139,
title = {Evaluation of Optimal Blood Culture Incubation Time To Maximize Clinically Relevant Results from a Contemporary Blood Culture Instrument and Media System.},
author = {Ransom EM, Alipour Z, Wallace MA, Burnham CA.},
journal = {J Clin Microbiol},
year = {2021},
doi = {10.1128/jcm.02459-20},
pmid = {33239377}
}
@article{lin202189,
title = {Scottish soldiers from the Battle of Dunbar 1650: A prosopographical approach to a skeletal assemblage.},
author = {Millard AR, Annis RG, Caffell AC, Dodd LL, Fischer R, Gerrard CM, Graves CP, Hendy J, Mackenzie L, Montgomery J, Nowell GM, Radini A, Beaumont J, Koon HEC, Speller CF.},
journal = {PLoS One},
year = {2020},
doi = {10.1371/journal.pone.0243369},
pmid = {33347451}
}
@article{lin202142,
title = {Minimum inhibitory concentrations and resistance for selected antimicrobial agents (including imipenem, linezolid and tigecycline) of bacteria obtained from eye infections.},
author = {Galvis V, Tello A, Sanchez W, Camacho P, Villarreal D, Garcia D.},
journal = {Rom J Ophthalmol},
year = {2020},
doi = {10.22336/rjo.2020.44},
pmid = {33367160}
}
@article{lin202161,
title = {Salivary dysbiosis in Sjögren's syndrome and a commensal-mediated immunomodulatory effect of salivary gland epithelial cells.},
author = {Tseng YC, Yang HY, Lin WT, Chang CB, Chien HC, Wang HP, Chen CM, Wang JT, Li C, Wu SF, Hsieh SC.},
journal = {NPJ Biofilms Microbiomes},
year = {2021},
doi = {10.1038/s41522-021-00192-w},
pmid = {33707430}
}
@article{lin202153,
title = {Developing and validating a risk algorithm to diagnose Neisseria gonorrhoeae and Chlamydia trachomatis in symptomatic Rwandan women.},
author = {Wall KM, Nyombayire J, Parker R, Ingabire R, Bizimana J, Mukamuyango J, Mazzei A, Price MA, Unyuzimana MA, Tichacek A, Allen S, Karita E.},
journal = {BMC Infect Dis},
year = {2021},
doi = {10.1186/s12879-021-06073-z},
pmid = {33910514}
}
@article{lin202141,
title = {Subgingival microbiome of deep and shallow periodontal sites in patients with rheumatoid arthritis: a pilot study.},
author = {Lehenaff R, Tamashiro R, Nascimento MM, Lee K, Jenkins R, Whitlock J, Li EC, Sidhu G, Anderson S, Progulske-Fox A, Bubb MR, Chan EKL, Wang GP.},
journal = {BMC Oral Health},
year = {2021},
doi = {10.1186/s12903-021-01597-x},
pmid = {33964928}
}
@article{lin202173,
title = {An Exposed Outer Membrane Hemin-Binding Protein Facilitates Hemin Transport by a TonB-Dependent Receptor in Riemerella anatipestifer.},
author = {Liu M, Liu S, Huang M, Wang Y, Wang M, Tian X, Li L, Yang Z, Wang M, Zhu D, Jia R, Chen S, Zhao X, Yang Q, Wu Y, Zhang S, Huang J, Ou X, Mao S, Gao Q, Sun D, Yu YL, Cheng A.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.00367-21},
pmid = {33990314}
}
@article{lin202158,
title = {Bacterial Composition and Metabolomics of Dental Plaque From Adolescents.},
author = {Havsed K, Stensson M, Jansson H, Carda-Dieguez M, Pedersen A, Neilands J, Svensater G, Mira A.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.716493},
pmid = {34395316}
}
@article{lin202154,
title = {Oral Microbiota-A New Frontier in the Pathogenesis and Management of Head and Neck Cancers.},
author = {Metsaniitty M, Hasnat S, Salo T, Salem A.},
journal = {Cancers (Basel)},
year = {2021},
doi = {10.3390/cancers14010046},
pmid = {35008213}
}
@article{lin202151,
title = {Electronic Cigarette Use Promotes a Unique Periodontal Microbiome.},
author = {Thomas SC, Xu F, Pushalkar S, Lin Z, Thakor N, Vardhan M, Flaminio Z, Khodadadi-Jamayran A, Vasconcelos R, Akapo A, Queiroz E, Bederoff M, Janal MN, Guo Y, Aguallo D, Gordon T, Corby PM, Kamer AR, Li X, Saxena D.},
journal = {mBio},
year = {2022},
doi = {10.1128/mbio.00075-22},
pmid = {35189698}
}
@article{lin202127,
title = {Improving the Diagnosis of Bacterial Infections: Evaluation of 16S rRNA Nanopore Metagenomics in Culture-Negative Samples.},
author = {Bouchiat C, Ginevra C, Benito Y, Gaillard T, Salord H, Dauwalder O, Laurent F, Vandenesch F.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.943441},
pmid = {35910644}
}
@article{lin202124,
title = {Pathogen Detection in Infective Endocarditis Using Targeted Metagenomics on Whole Blood and Plasma: a Prospective Pilot Study.},
author = {Flurin L, Wolf MJ, Fisher CR, Cano Cevallos EJ, Vaillant JJ, Pritt BS, DeSimone DC, Patel R.},
journal = {J Clin Microbiol},
year = {2022},
doi = {10.1128/jcm.00621-22},
pmid = {36040200}
}
@article{lin202147,
title = {The breast milk and childhood gastrointestinal microbiotas and disease outcomes: a longitudinal study.},
author = {Lif Holgerson P, Esberg A, West CE, Johansson I.},
journal = {Pediatr Res},
year = {2023},
doi = {10.1038/s41390-022-02328-w},
pmid = {36216869}
}
@article{lin202146,
title = {Pan-Genome Analysis Reveals Functional Divergences in Gut-Restricted Gilliamella and Snodgrassella.},
author = {Zhang Z, Guo Y, Yang F, Li J.},
journal = {Bioengineering (Basel)},
year = {2022},
doi = {10.3390/bioengineering9100544},
pmid = {36290512}
}
@article{lin202148,
title = {Pathogenic determinants of Kingella kingae disease.},
author = {Porsch EA, Hernandez KA, Morreale DP, Montoya NR, Yount TA, St Geme JW.},
journal = {Front Pediatr},
year = {2022},
doi = {10.3389/fped.2022.1018054},
pmid = {36304526}
}
@article{lin202156,
title = {In-Depth Metaproteomics Analysis of Oral Microbiome for Lung Cancer.},
author = {Jiang X, Zhang Y, Wang H, Wang Z, Hu S, Cao C, Xiao H.},
journal = {Research (Wash D C)},
year = {2022},
doi = {10.34133/2022/9781578},
pmid = {36320634}
}
@article{lin202182,
title = {Interpreting tree ensemble machine learning models with endoR.},
author = {Ruaud A, Pfister N, Ley RE, Youngblut ND.},
journal = {PLoS Comput Biol},
year = {2022},
doi = {10.1371/journal.pcbi.1010714},
pmid = {36516158}
}
@article{lin202157,
title = {The Shr receptor from Streptococcus pyogenes uses a cap and release mechanism to acquire heme-iron from human hemoglobin.},
author = {Macdonald R, Mahoney BJ, Soule J, Goring AK, Ford J, Loo JA, Cascio D, Clubb RT.},
journal = {Proc Natl Acad Sci U S A},
year = {2023},
doi = {10.1073/pnas.2211939120},
pmid = {36693107}
}
@article{lin202133,
title = {Oral microbiome in older adults with mild cognitive impairment.},
author = {Da D, Zhao Q, Zhang H, Wu W, Zeng X, Liang X, Jiang Y, Xiao Z, Yu J, Ding S, Zheng L, Zhang Y, Xu X, Ding D.},
journal = {J Oral Microbiol},
year = {2023},
doi = {10.1080/20002297.2023.2173544},
pmid = {36742284}
}
@article{lin202150,
title = {Impact of HIV on the Oral Microbiome of Children Living in Sub-Saharan Africa, Determined by Using an rpoC Gene Fragment Metataxonomic Approach.},
author = {Mann AE, O'Connell LM, Osagie E, Akhigbe P, Obuekwe O, Omoigberale A, Kelly C, DOMHaIN Study Team, Coker MO, Richards VP.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.00871-23},
pmid = {37428077}
}
@article{lin202143,
title = {Phylogenomic analysis of the understudied Neisseriaceae species reveals a poly- and paraphyletic Kingella genus.},
author = {Morreale DP, St Geme Iii JW, Planet PJ.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.03123-23},
pmid = {37882538}
}
@article{lin202144,
title = {Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals.},
author = {Kirdok E, Kashuba N, Damlien H, Manninen MA, Nordqvist B, Kjellstrom A, Jakobsson M, Lindberg AM, Stora J, Persson P, Andersson B, Aravena A, Gotherstrom A.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-023-48762-6},
pmid = {38238372}
}
@article{lin202105,
title = {A comprehensive review of microbial fuel cells considering materials, methods, structures, and microorganisms.},
author = {Jalili P, Ala A, Nazari P, Jalili B, Ganji DD.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e25439},
pmid = {38371992}
}
@article{lin202119,
title = {Identifying the oral microbiome of adolescents with and without dental fluorosis based on full-length 16S rRNA gene sequencing.},
author = {Luo S, Shao R, Hong Y, Zhang T, Zhou Q, Zhou Q, Rao F, Zhao X, Dong Y, Zhu R, Ling P, Cui G, Guan Z, Luo P, He Y, Qi X, Liao J, Hong W.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1296753},
pmid = {38380100}
}
@article{lin202134,
title = {Microbiological assessment of success and failure in pulp revitalization: a randomized clinical trial using calcium hydroxide and chlorhexidine gluconate in traumatized immature necrotic teeth.},
author = {Wikstrom A, Romani Vestman N, Rakhimova O, Lazaro Gimeno D, Tsilingaridis G, Brundin M.},
journal = {J Oral Microbiol},
year = {2024},
doi = {10.1080/20002297.2024.2343518},
pmid = {38665416}
}
@article{lin202135,
title = {Characterization of tongue coating microbiome from patients with colorectal cancer.},
author = {Chen Q, Huang X, Zhang H, Jiang X, Zeng X, Li W, Su H, Chen Y, Lin F, Li M, Gu X, Jin H, Wang R, Diao D, Wang W, Li J, Wei S, Zhang W, Liu W, Huang Z, Deng Y, Luo W, Liu Z, Zhang B.},
journal = {J Oral Microbiol},
year = {2024},
doi = {10.1080/20002297.2024.2344278},
pmid = {38686186}
}
@article{lin202132,
title = {Neisseria leonii sp. nov., isolated from the nose, lung, and liver of rabbits.},
author = {Boutroux M, Favre-Rochex S, Gorgette O, Touak G, Muhle E, Bouchier C, Chesneau O, Veyrier FJ, Clermont D, Rahi P.},
journal = {Int J Syst Evol Microbiol},
year = {2024},
doi = {10.1099/ijsem.0.006460},
pmid = {39023135}
}
@article{lin202123,
title = {Molecular characterization of the tet (M)-carrying transposon Tn7124 and plasmids in Escherichia coli isolates recovered from swine.},
author = {Liu Y, Qiao Z, Ma Y, Wang M, Hu G, Li E.},
journal = {Front Vet Sci},
year = {2024},
doi = {10.3389/fvets.2024.1430398},
pmid = {39507219}
}
@article{lin202126,
title = {Analysis of the efficacy of MALDI-TOF MS technology in identifying microorganisms in cancer patients and oncology hospital environment.},
author = {Czeszewska-Rosiak G, Adamczyk I, Ludwiczak A, Fijalkowski P, Fijalkowski P, Twaruzek M, Zloch M, Gabrys D, Mista W, Tretyn A, Pomastowski PP.},
journal = {Heliyon},
year = {2025},
doi = {10.1016/j.heliyon.2025.e42015},
pmid = {39906802}
}
@article{lin202128,
title = {Inter-kingdom interactions and environmental influences on the oral microbiome in severe early childhood caries.},
author = {Weng L, Cui Y, Jian W, Zhang Y, Pang L, Cao Y, Zhou Y, Liu W, Lin H, Tao Y.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.02518-24},
pmid = {40243315}
}
@article{lin202104,
title = {Two different and robustly modeled DNA binding modes of Competence Protein ComP - systematic modeling with AlphaFold 3, RoseTTAFold2NA, Chai-1 and re-docking in HADDOCK.},
author = {Helsem SA, Alfsnes K, Frye SA, Hesselberg Lovestad A, Ambur OH.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0315160},
pmid = {40338866}
}
@article{lin202120,
title = {Host Specificity of Snodgrassella in Eastern and Western Honeybees and Its Effects on Naturally Occurring Deformed Wing Virus Titers.},
author = {Zhou N, Yang S, Wei R, Hu F, Liu D, Zheng H.},
journal = {Insects},
year = {2025},
doi = {10.3390/insects16050478},
pmid = {40429190}
}
@article{lin202117,
title = {Rapid Griess assay (RGA): a chairside test for ex vivo semi-quantitative oral nitrite measurement and in vitro assessment of nitrite production by oral bacteria.},
author = {Mavropoulos SKB, Zaiton R, Basic A, Dahlen G.},
journal = {J Oral Microbiol},
year = {2025},
doi = {10.1080/20002297.2025.2517039},
pmid = {40524744}
}
@article{lin202118,
title = {Late Achromobacter endocarditis after device closure of ventricular septal defect: a case report.},
author = {Nazrin T, Reza SA, Naher N, Nahid F, Reza AQM.},
journal = {Eur Heart J Case Rep},
year = {2025},
doi = {10.1093/ehjcr/ytaf288},
pmid = {40606017}
}
@article{lin202121,
title = {Non-Surgical Periodontal Therapy Modulates Oral Microbiome in Primary Immunodeficient Children.},
author = {Stephen AS, Worrall S, Somani C, Allaker RP, Davies J, Nibali L, Donos N.},
journal = {J Clin Periodontol},
year = {2025},
doi = {10.1111/jcpe.14201},
pmid = {40685148}
}
@article{lin202116,
title = {A pilot study investigating the impact of cigarette smoking on oral nitrate-reducing bacteria within the oral microbiome.},
author = {Nicholas TL, Bescos R, Doble A, Muddiman K, Kellett P, Stephen AS, Toit LD, Witton R, Brookes ZLS.},
journal = {J Dent},
year = {2025},
doi = {10.1016/j.jdent.2025.106127},
pmid = {40998102}
}
@article{lin202122,
title = {Microbiome differences between trauma- and caries-derived periapical lesions using next-generation sequencing.},
author = {Zhan J, Huang Y, Meng X, Wang Y, Liang J, Zhu F, She R, Huang S, Huo L.},
journal = {J Oral Microbiol},
year = {2025},
doi = {10.1080/20002297.2025.2560016},
pmid = {41000236}
}