Name: Komagataeibacter xylinus DSM 6513
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 88

Type strain:

Species: Komagataeibacter xylinus

Culture col. no.: DSM 6513, ATCC 23767, BCC 7226, JCM 7644, LMG 1515, NBRC 15237, NCIMB 11664, BCRC 12952, CCM 3611, CCUG 37299, CECT 7351, CIP 103107, IFO 15237, NCTC 4112, VTT E-97831

Strain history: CIP <- 2019, DSMZ <- 1988, NCIB <- 1949, NCTC <- 1933, G. Bertrand, sorbose bacterium, Acetobacter xylinus

NCBI tax ID(s): 1220579 (strain), 28448 (species)

SI-ID 92679

LMG 1515, ATCC 23767, DSM 6513, LMG 1516, LMG 1533, LMG 1691, NCIB 11301, NCIB 11664, NCTC 4112, CCUG 37299, CIP 103107, JCM 7644, CCM 3611, CCRC 12952, IFO 15237, NCIMB 11301, NCIMB4112, CIP 57.14, CECT 315, NBRC 15237, BCRC 12952, BCC 7226, CGMCC 1.1812, VTT E-97831, CECT 7351, NCIMB 11664, NCTC 41124, NCIB 4112

Other strains from Komagataeibacter xylinus

K. xylinus DSM 2325, ATCC 11142, NCIB 5346, ...
K. xylinus B 4168, DSM 2004, ATCC 23768, NCIB ...
K. xylinus Blackley strain G2, BU 335, DSM ...
K. xylinus East Africa, DSM 46605, ATCC 14851, ...
K. xylinus DSM 46590, IMET 10141
K. xylinus DSM 46591, IMET 10142
K. xylinus BU 134, DSM 46603, ATCC 10821, ...
K. xylinus JCM 10150
K. xylinus JCM 7664, IFO 13693, NBRC 13693

Section

Komagataeibacter xylinus DSM 6513 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from mountains ash berries.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Komagataeibacter*
	Species	**Komagataeibacter xylinus**
	Full Scientific Name (LPSN)	Komagataeibacter xylinus (Brown 1886) Yamada et al. 2013

	Synonym	"Komagatabacter* xylinus"*
	Synonym	"Bacterium* xylinum"*
	Synonym	Acetobacter xylinus
	Synonym	Gluconoacetobacter xylinus
	Synonym	Acetobacter aceti subsp. xylinus
	Synonym	Acetobacter xylinum
	Synonym	Acetobacter aceti subsp. xylinum
	Synonym	Gluconacetobacter xylinus

Information on morphological and physiological properties Morphology

[Ref.: #124001]	Gram stain	negative

[Ref.: #124001]	Cell shape	rod-shaped

[Ref.: #124001]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2710]

Culture medium

YPM MEDIUM (DSMZ Medium 360)

[Ref.: #2710]

Culture medium growth

[Ref.: #2710]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2710]

Culture medium composition

expand / minimize

[Ref.: #2710]

Culture medium

GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)

[Ref.: #2710]

Culture medium growth

[Ref.: #2710]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2710]

Culture medium composition

expand / minimize

[Ref.: #36961]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #36961]

Culture medium growth

[Ref.: #36961]

Culture medium composition

expand / minimize

[Ref.: #38117]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #38117]

Culture medium growth

[Ref.: #38117]

Culture medium composition

expand / minimize

[Ref.: #124001]

Culture medium

CIP Medium 72

[Ref.: #124001]

Culture medium growth

[Ref.: #124001]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #124001]

Culture medium

CIP Medium 1

[Ref.: #124001]

Culture medium growth

[Ref.: #124001]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #2710]		growth	28 °C
[Ref.: #36961]		growth	30 °C
[Ref.: #38117]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #124001]		growth	22-30 °C
[Ref.: #124001]	no	growth	10 °C
[Ref.: #124001]	no	growth	37 °C
[Ref.: #124001]	no	growth	41 °C
[Ref.: #124001]	no	growth	45 °C

[Ref.: #2710]	Temperature range	mesophilic
[Ref.: #36961]	Temperature range	mesophilic
[Ref.: #38117]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #124001]	Temperature range	psychrophilic
[Ref.: #124001]	Temperature range	mesophilic
[Ref.: #124001]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

	Salt	Tested relation		Salt conc.
[Ref.: #124001]	NaCl		growth	0	%
[Ref.: #124001]	NaCl	no	growth	2	%
[Ref.: #124001]	NaCl	no	growth	4	%
[Ref.: #124001]	NaCl	no	growth	6	%
[Ref.: #124001]	NaCl	no	growth	8	%
[Ref.: #124001]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #124001]	hippurate ChEBI	-	hydrolysis
[Ref.: #124001]	nitrate ChEBI	-	reduction
[Ref.: #124001]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #124001]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #124001]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #124001]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #124001]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #124001]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #124001]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #124001]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #124001]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #124001]	7371	-	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2710]	Sample type/isolated from	mountains ash berries

[Ref.: #67770]	Sample type/isolated from	Mountain ash berries

[Ref.: #124001]	Sample type/isolated from	Plant, Mountain ash berries
[Ref.: #124001]	Isolation date	1896
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X75619 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	523
Soil Samples	662
Animal Samples	2327
Plant Samples	555
Total Samples	4067

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2710]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #124001]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2710]	Gluconacetobacter xylinus gene for 16S rRNA, partial sequence, strain: NBRC 15237	AB205216	1393	ENA	28448 tax ID
[Ref.: #2710]	A.xylinum gene for 16S ribosomal RNA	X75619	1481	ENA	28448 tax ID
[Ref.: #20218]	Gluconacetobacter xylinus gene for 16S rRNA, partial sequence, strain: JCM 7644	AB205218	1445	ENA	1234668 tax ID	*
[Ref.: #20218]	Gluconacetobacter xylinus strain LMG 1515T 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	KC478458	790	ENA	28448 tax ID	*
[Ref.: #20218]	Gluconacetobacter xylinus strain DSM 6513T 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	KC478459	807	ENA	28448 tax ID	*
[Ref.: #20218]	A.xylinum DNA for 16S-23S spacer region (NCIB 11664, LMG 1515 strain)	X85405	882	ENA	28448 tax ID	*
[Ref.: #20218]	Gluconacetobacter xylinus gene for 16S rRNA, partial sequence, strain: NBRC 15237	AB680815	1414	ENA	28448 tax ID	*
[Ref.: #20218]	Gluconacetobacter xylinus strain LMG 1515 16S ribosomal RNA gene, partial sequence	JF794013	1352	ENA	28448 tax ID	*
[Ref.: #20218]	Gluconacetobacter xylinus gene for 16S rRNA, partial sequence, strain: JCM 7644	AB645737	1411	ENA	1234668 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Komagataeibacter xylinus NBRC 15237	GCA_001571345	contig	GenBank	1220579 tax ID
[Ref.: #67770]	Komagataeibacter xylinus LMG 1515	GCA_003207915	contig	GenBank	28448 tax ID
[Ref.: #66792]	Komagataeibacter xylinus NBRC 15237	1220579.3	wgs	PATRIC	1220579 tax ID	*
[Ref.: #66792]	Komagataeibacter xylinus strain LMG 1515	28448.11	wgs	PATRIC	28448 tax ID	*
[Ref.: #66792]	Komagataeibacter xylinus NBRC 15237	2731957626	draft	JGI IMG/M	1220579 tax ID	*
[Ref.: #66792]	Komagataeibacter xylinus LMG 1515	2846462022	draft	JGI IMG/M	28448 tax ID	*

[Ref.: #67770]

GC-content

61.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Komagataeibacter xylinus NBRC 15237 PATRIC: 1220579.3
[Ref.: #69480]	motile	no	85.795	no
[Ref.: #69480]	gram-positive	no	96.49	no
[Ref.: #69480]	anaerobic	no	97.995	no
[Ref.: #69480]	aerobic	yes	73.588	no
[Ref.: #69480]	halophile	no	92.509	no
[Ref.: #69480]	spore-forming	no	95.386	no
[Ref.: #69480]	glucose-util	yes	91.288	no
[Ref.: #69480]	flagellated	no	96.136	no
[Ref.: #69480]	thermophile	no	96.267	yes
[Ref.: #69480]	glucose-ferment	no	85.282	no

Availability in culture collections External links

[Ref.: #2710]

Culture collection no.

DSM 6513, ATCC 23767, BCC 7226, JCM 7644, LMG 1515, NBRC 15237, NCIMB 11664, BCRC 12952, CCM 3611, CCUG 37299, CECT 7351, CIP 103107, IFO 15237, NCTC 4112, VTT E-97831

[Ref.: #69771]

SI-ID 92679

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar.	Maric L, Cleenwerck I, Accetto T, Vandamme P, Trcek J	Microorganisms	10.3390/microorganisms8081178	2020	*
Metabolism	Genome sequencing and phylogenetic analysis of K1G4: a new Komagataeibacter strain producing bacterial cellulose from different carbon sources.	La China S, Bezzecchi A, Moya F, Petroni G, Di Gregorio S, Gullo M	Biotechnol Lett	10.1007/s10529-020-02811-6	2020	*
Metabolism	Bacterial cellulose production by Acetobacter xylinum ATCC 23767 using tobacco waste extract as culture medium.	Ye J, Zheng S, Zhang Z, Yang F, Ma K, Feng Y, Zheng J, Mao D, Yang X	Bioresour Technol	10.1016/j.biortech.2018.12.028	2018	*

References

#2710

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6513

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36961 ; Curators of the CIP;
#38117 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69771

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92679.1 )

#124001 Collection of Institut Pasteur ; Curators of the CIP; CIP 103107
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Komagataeibacter xylinus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Komagataeibacter xylinus NBRC 15237

Change proposal

Change proposal