Name: Mycoplasmopsis californica ST-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8599

Type strain:

Species: Mycoplasmopsis californica

Strain Designation: ST-6

Culture col. no.: DSM 21477, AMRC-C 1077, ATCC 33461, NCTC 10189

Strain history: <- J. K. Davis; ST-6 {2008} <- J. G. Tully <- D. E. Jasper, California {1982}

NCBI tax ID(s): 2113 (species)

Section

Mycoplasmopsis californica ST-6 is a mesophilic animal pathogen that was isolated from bovine milk .

animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Mycoplasmatota*
	Class	*Mollicutes*
	Order	*Mycoplasmoidales*
	Family	*Metamycoplasmataceae*
	Genus	*Mycoplasmopsis*
	Species	**Mycoplasmopsis californica**
	Full Scientific Name (PNU)	Mycoplasmopsis californica (Jasper et al. 1981) Gupta et al. 2018

Synonym

Mycoplasma californicum

Information on morphological and physiological properties Morphology

[Ref.: #15728]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15728]

Culture medium

SP4-Z MEDIUM (DSMZ Medium 1076b)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15728]			growth	37 °C

[Ref.: #15728]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	55.56	5 of 9
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	acetate fermentation	50	2 of 4
[Ref.: #66794]	photosynthesis	50	7 of 14
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycolysis	47.06	8 of 17
[Ref.: #66794]	NAD metabolism	44.44	8 of 18
[Ref.: #66794]	d-mannose degradation	44.44	4 of 9
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	palmitate biosynthesis	40.91	9 of 22
[Ref.: #66794]	purine metabolism	40.43	38 of 94
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	37.5	3 of 8
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	UDP-GlcNAc biosynthesis	33.33	1 of 3
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	serine metabolism	33.33	3 of 9
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
[Ref.: #66794]	oxidative phosphorylation	31.87	29 of 91
[Ref.: #66794]	pyrimidine metabolism	31.11	14 of 45
[Ref.: #66794]	vitamin B1 metabolism	30.77	4 of 13
[Ref.: #66794]	lipid metabolism	29.03	9 of 31
[Ref.: #66794]	reductive acetyl coenzyme A pathway	28.57	2 of 7
[Ref.: #66794]	glutamate and glutamine metabolism	28.57	8 of 28
[Ref.: #66794]	pentose phosphate pathway	27.27	3 of 11
[Ref.: #66794]	coenzyme A metabolism	25	1 of 4
[Ref.: #66794]	butanoate fermentation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	non-pathway related	23.68	9 of 38
[Ref.: #66794]	methionine metabolism	23.08	6 of 26
[Ref.: #66794]	phenylalanine metabolism	23.08	3 of 13
[Ref.: #66794]	valine metabolism	22.22	2 of 9
[Ref.: #66794]	degradation of pentoses	21.43	6 of 28
[Ref.: #66794]	glutathione metabolism	21.43	3 of 14
[Ref.: #66794]	tryptophan metabolism	21.05	8 of 38
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15728]	Sample type/isolated from	bovine milk (mastitis)
[Ref.: #15728]	Country	USA
[Ref.: #15728]	Country ISO 3 Code	USA
[Ref.: #15728]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Fluids	#Milk

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15728]	Pathogenicity (animal)	yes
[Ref.: #15728]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Mycoplasma californicum strain ATCC 33461 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AY736031	936	ENA	2113 tax ID	*
[Ref.: #15728]	M.californicum 16S ribosomal RNA small subunit	M24582	1490	ENA	2113 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycoplasmopsis californica ST-6	GCA_000695835	complete	GenBank	2113 tax ID	*
[Ref.: #66792]	Mycoplasmopsis californica NCTC10189	GCA_900660595	complete	GenBank	2113 tax ID	*
[Ref.: #66792]	Mycoplasma californicum strain NCTC10189	2113.9	complete	PATRIC	2113 tax ID	*
[Ref.: #66792]	Mycoplasmopsis californica ST-6	2576861462	complete	JGI IMG/M	2113 tax ID	*
[Ref.: #66792]	Klebsiella pneumoniae EuSCAPE_IL011	GCA_902156195	contig	PATRIC	573 tax ID	*

Availability in culture collections External links

[Ref.: #15728]

Culture collection no.

DSM 21477, AMRC-C 1077, ATCC 33461, NCTC 10189

[Ref.: #20218]

Associated Passport(s) in StrainInfo

109348, 109346, 341615

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycoplasma mucosicanis sp. nov., isolated from the mucosa of dogs.	Spergser J, Langer S, Muck S, Macher K, Szostak M, Rosengarten R, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.015750-0	2010	*
Genetics	Complete Genome Sequence of the Bovine Mastitis Pathogen Mycoplasma californicum Strain ST-6T (ATCC 33461T).	Calcutt MJ, Foecking MF, Fox LK	Genome Announc	10.1128/genomeA.00648-14	2014	*
Genetics	Molecular epidemiology of cases of Mycoplasma californicum infection in Japan.	Hata E, Suzuki K, Hanyu H, Itoh M, Higuchi H, Kobayashi H	Appl Environ Microbiol	10.1128/AEM.02488-14	2014	*

References

#15728

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21477

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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