Mycobacterium mantenii (DSM 45255, CIP 109863, 04-1474)

Name: Mycobacterium mantenii (DSM 45255, CIP 109863, 04-1474)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8583

Type strain

Strain Designation 04-1474, NLA000401474

Culture col. no. DSM 45255 CIP 109863 04-1474 NLA000401474 JCM 18113

NCBI tax ID(s) 560555

Special Collections DSMZ JCM CIP Literature strains

History <- J. van Ingen; NLA000401474 <- E. J. Kuijper CIP 109863 <-- J. van Ingen NLA000401474 (=04-1474) <-- E. J. Kuijper. CIP <- 2008, J. Van Inge, RIVM, Bilthoven, The Netherlands: strain NLA000401474 <- E. J. Kuijper, Leiden Univ., Leiden, The Netherlands

Links

Mycobacterium mantenii 04-1474 is a mesophilic, rod-shaped prokaryote that was isolated from lymph node biopsy of a child.

rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 364721

CT2017-00304,CIP 109863,DSM 45255,JCM 18113

@ref 20215

Last LPSN update 2026-02-09 11:19:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium mantenii

Full scientific name Mycobacterium mantenii van Ingen et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Confidence	Cell shape
29294			rod-shaped
120782
125439	positive	94

Pigmentation

29294

Productionyes

Multimedia

@ref:	15933
multimedia content:	DSM_45255.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45255.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15933	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
37864	MEDIUM 55 - for Mycobacterium
120782	CIP Medium 750	Medium recipe at CIP
120782	CIP Medium 55	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15933	positive	growth	37	mesophilic
29294	positive	growth	25-45
29294	positive	optimum	36	mesophilic
37864	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.6

Spore formation

29294

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
120782	17632 ChEBI	nitrate	-	reduction
120782	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120782	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29294	catalase	+	1.11.1.6
120782	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120782	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
29294	urease	+	3.5.1.5
120782	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120782	-	+	-	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	#Biopsy
#Infection	#Patient	-
#Host Body-Site	#Organ	#Lymph node
#Host	#Human	#Child

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
15933	lymph node biopsy of a child	Leiden	Netherlands	NLD	Europe
67770	Human, lymph node biopsy specimen	Leiden	Netherlands	NLD	Europe
120782	Human, Lymph node biopsy	Leiden	Netherlands	NLD	Europe	2004

Taxonmaps

69479

Global distribution of 16S sequence FJ042897 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	300
Soil Samples	1602
Animal Samples	128
Plant Samples	202
Total Samples	2232

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15933	2	Risk group (German classification) According to TRBA 466
120782	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1073177v1 assembly for Mycobacterium mantenii JCM 18113	complete	GCA_010731775	560555.10	8110350686	560555	96.31
66792	ASM2582264v1 assembly for Mycobacterium mantenii DSM 45255	scaffold	GCA_025822645	560555.12	8115334697	560555	66.39
67770	ASM208633v1 assembly for Mycobacterium mantenii DSM 45255	contig	GCA_002086335	560555.3	8111407143	560555	46.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15933	Mycobacterium mantenii strain NLA000401474 16S ribosomal RNA gene, partial sequence	FJ042897	1471		560555
67770	Mycobacterium mantenii strain NLA000401474 16S-23S ribosomal RNA intergenic spacer, partial sequence	FJ232522	281		560555

GC content

@ref	GC-content (mol%)	Method
67770	66.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycobacterium mantenii strain JCM 18113
PATRIC: 560555.10

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	65.80	no
125439	motility	BacteriaNetⓘ	no	77.40	no
125439	gram_stain	BacteriaNetⓘ	positive	94.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium mantenii JCM 18113
NCBI: GCA_010731775.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.36	no
125438	anaerobic	anaerobicⓘ	no	96.49	no
125438	aerobic	aerobicⓘ	yes	76.69	no
125438	spore-forming	spore-formingⓘ	no	63.99	yes
125438	thermophilic	thermophileⓘ	no	91.30	yes
125438	flagellated	motile2+ⓘ	no	86.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbiological features and clinical relevance of new species of the genus Mycobacterium.	Tortoli E.	Clin Microbiol Rev	10.1128/cmr.00035-14	2014
Genetics	Characterization of Mycobacterium salfingeri sp. nov.: A novel nontuberculous mycobacteria isolated from a human wound infection.	Musser E, Smith C, Halse TA, Kohlerschmidt D, Rourke A, Fiero A, Musser KA, Escuyer V, Lapierre P.	Front Microbiol	10.3389/fmicb.2022.992610	2022
Phylogeny	Mycobacterium mantenii sp. nov., a pathogenic, slowly growing, scotochromogenic species.	van Ingen J, Lindeboom JA, Hartwig NG, de Zwaan R, Tortoli E, Dekhuijzen PN, Boeree MJ, van Soolingen D	Int J Syst Evol Microbiol	10.1099/ijs.0.010405-0	2009

References

#15933	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45255
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25710	IJSEM 2782 2009 ( DOI 10.1099/ijs.0.010405-0 , PubMed 19625425 )
#29294	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25710
#37864	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120782	Collection of Institut Pasteur ; Curators of the CIP; CIP 109863
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium mantenii (DSM 45255, CIP 109863, 04-1474)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_010731775

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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