Mycobacterium vulneris (DSM 45247, CIP 109859, CCUG 58459)

Name: Mycobacterium vulneris (DSM 45247, CIP 109859, CCUG 58459)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8581

Type strain

Strain Designation NLA 000700772, NLA000700772

Culture col. no. DSM 45247 CIP 109859 CCUG 58459 NLA 000700772 JCM 18115 1 more

NCBI tax ID(s) 547163

Special Collections DSMZ CCUG JCM CIP Literature strains

History <- J. van Ingen, National Institute for Public Health and the Environment; NLA 000700772 <- K. Koesters CIP 109859 <-- J. van Ingen NLA000700772. CIP <- 2008, RIVM <- J. Van Ingen, RIVM, Bilthoven, The Netherlands: strain NLA000700772

Links

Mycobacterium vulneris NLA 000700772 is a microaerophile, rod-shaped bacterium that was isolated from human, infected wound after dogbite.

rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 364160

CT2017-00310,CIP 109859,DSM 45247,JCM 18115,CCUG 58459T

@ref 20215

Last LPSN update 2026-02-09 11:19:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium vulneris

Full scientific name Mycobacterium vulneris van Ingen et al. 2009

Synonyms (1)

Mycolicibacterium vulneris

Morphology

Cell morphology

@ref	Cell shape	Motility
29220	rod-shaped
123894

Colony morphology

61691

Incubation period3-5 days

Pigmentation

29220

Productionyes

Multimedia

@ref:	15915
multimedia content:	DSM_45247.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45247.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15915	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
37862	MEDIUM 55 - for Mycobacterium
123894	CIP Medium 55	Medium recipe at CIP
123894	CIP Medium 750	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
15915	positive	growth	37
29220	positive	growth	25-36
29220	positive	optimum	30.5
37862	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
61691	microaerophile
125439	obligate aerobe	99.3

Spore formation

29220

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
123894	17632 ChEBI	nitrate	-	reduction
123894	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123894	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29220	catalase	+	1.11.1.6
123894	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123894	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
123894	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123894	-	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Host	#Human	-
#Host	#Mammals	#Canidae (Dog)
#Host Body-Site	#Other	#Wound

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
15915	human, infected wound after dogbite		Limburg Province, Venlo	Netherlands	NLD	Europe
61691	Human wound,42-yr-old woman,dog bite,leg	2007	Limburg	Netherlands	NLD	Europe
67770	Human, infected wound after dogbite, a left lower leg		Limburg	Netherlands	NLD	Europe
123894	Human, Infected wound after dogbite, left lower leg		Limburg	Netherlands	NLD	Europe	2007

Taxonmaps

69479

Global distribution of 16S sequence LT718448 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	4789
Soil Samples	12779
Animal Samples	3677
Plant Samples	2833
Total Samples	24078

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15915	2	Risk group (German classification) According to TRBA 466
123894	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	PRJEB5750_assembly_1 assembly for Mycolicibacterium vulneris DSM 45247	contig	GCA_000612885	547163.3	2619619212	547163	53.91
67770	ASM210476v1 assembly for Mycolicibacterium vulneris DSM 45247	contig	GCA_002104765	547163.12	2867085808	547163	49.74

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15915	Mycobacterium vulneris partial 16S rRNA gene, strain DSM 45247	LT718448	1508		547163
67770	Mycobacterium vulneris strain NLA000700772 16S ribosomal RNA gene, complete sequence	EU834055	1471		547163

GC content

@ref	GC-content (mol%)	Method
67770	66.8	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycolicibacterium vulneris DSM 45247
NCBI: GCA_000612885

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	70.70	no
125439	motility	BacteriaNetⓘ	no	65.30	no
125439	gram_stain	BacteriaNetⓘ	positive	89.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium vulneris strain DSM 45247
PATRIC: 547163.12

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.22	no
125438	anaerobic	anaerobicⓘ	no	96.51	yes
125438	spore-forming	spore-formingⓘ	no	63.24	yes
125438	aerobic	aerobicⓘ	yes	79.08	no
125438	thermophilic	thermophileⓘ	no	95.50	no
125438	flagellated	motile2+ⓘ	no	86.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
Phylogeny	Microbiological features and clinical relevance of new species of the genus Mycobacterium.	Tortoli E.	Clin Microbiol Rev	10.1128/cmr.00035-14	2014
Genetics	Draft Genome Sequence of Mycobacterium vulneris DSM 45247T.	Croce O, Robert C, Raoult D, Drancourt M	Genome Announc	10.1128/genomeA.00370-14	2014
Phylogeny	Proposal to elevate Mycobacterium avium complex ITS sequevar MAC-Q to Mycobacterium vulneris sp. nov.	van Ingen J, Boeree MJ, Kosters K, Wieland A, Tortoli E, Dekhuijzen PN, van Soolingen D	Int J Syst Evol Microbiol	10.1099/ijs.0.008854-0	2009

References

#15915	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45247
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25641	IJSEM 2277 2009 ( DOI 10.1099/ijs.0.008854-0 , PubMed 19620376 )
#29220	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25641
#37862	; Curators of the CIP;
#61691	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58459
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123894	Collection of Institut Pasteur ; Curators of the CIP; CIP 109859
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium vulneris (DSM 45247, CIP 109859, CCUG 58459)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000612885

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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