Mycobacterium riyadhense (DSM 45176, CIP 109808, CCUG 58462)

Name: Mycobacterium riyadhense (DSM 45176, CIP 109808, CCUG 58462)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8579

Type strain

Strain Designation NLA000201958

Culture col. no. DSM 45176 CIP 109808 CCUG 58462 NLA000201958

NCBI tax ID(s) 486698

Special Collections DSMZ CCUG CIP Wink compendium Literature strains

History <- J. van Ingen, RIVM; NLA 000201958 <- S.A. Al-Hajoj CIP <- 2008, J. Van Ingen, RIVM, Bilthoven, The Netherlands: strain NLA000201958 <- King Faisal Hosp., Riyadh, Saudi Arabia

Links

Mycobacterium riyadhense NLA000201958 is a microaerophile bacterium that was isolated from patient, maxillary sinus lavage.

microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399593

CT2017-00309,DSM 45176,CIP 109808,CCUG 58462T

@ref 20215

Last LPSN update 2026-02-09 11:19:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium riyadhense

Full scientific name Mycobacterium riyadhense van Ingen et al. 2009

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	91
125439	96.6	positive
125439	91.4

Colony morphology

@ref	Colony color	Incubation period	Medium used
19718	Beige	10-14 days	ISP 2
19718		10-14 days	ISP 4
19718		10-14 days	ISP 5
19718		10-14 days	ISP 6
19718		10-14 days	ISP 7
61693		3-5 days

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19718		ISP 2
19718		ISP 4
19718		ISP 5
19718		ISP 6
19718		ISP 7

Pigmentation

29078

Productionno

Multimedia

@ref:	15640
multimedia content:	DSM_45176.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45176.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15640	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
19718	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19718	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19718	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19718	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19718	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes

Culture temp

@ref	Growth	Type	Temperature (°C)
15640	positive	growth	37
19718	positive	optimum	37
29078	positive	growth	24-45
29078	positive	optimum	36

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
61693	microaerophile
125439	obligate aerobe	97.7

Observation

29078

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	+	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	+	fermentation	from API Coryne
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
29078	17632 ChEBI	nitrate	+	reduction
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
29078	53426 ChEBI	tween 80	+	carbon source
29078	16199 ChEBI	urea	+	carbon source
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
29078	arylsulfatase	+	3.1.6.1
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
29078	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
29078	urease	+	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	valine metabolism	100	9 of 9
66794	coenzyme A metabolism	100	4 of 4
66794	cyanate degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	enterobactin biosynthesis	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	vitamin K metabolism	100	5 of 5
66794	octane oxidation	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	phenylmercury acetate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	phenylalanine metabolism	92.31	12 of 13
66794	starch degradation	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	propionate fermentation	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	d-mannose degradation	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	citric acid cycle	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	vitamin B12 metabolism	85.29	29 of 34
66794	purine metabolism	84.04	79 of 94
66794	pentose phosphate pathway	81.82	9 of 11
66794	factor 420 biosynthesis	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	glutathione metabolism	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	4-hydroxymandelate degradation	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	urea cycle	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	sulfopterin metabolism	75	3 of 4
66794	androgen and estrogen metabolism	75	12 of 16
66794	lactate fermentation	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	toluene degradation	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	pyrimidine metabolism	73.33	33 of 45
66794	metabolism of disaccharids	72.73	8 of 11
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	lipid metabolism	70.97	22 of 31
66794	glycolysis	70.59	12 of 17
66794	leucine metabolism	69.23	9 of 13
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	IAA biosynthesis	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	3-phenylpropionate degradation	66.67	10 of 15
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	methionine metabolism	65.38	17 of 26
66794	cholesterol biosynthesis	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	tryptophan metabolism	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	lysine metabolism	61.9	26 of 42
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	phenol degradation	60	12 of 20
66794	Entner Doudoroff pathway	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	gallate degradation	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	3-chlorocatechol degradation	60	3 of 5
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	non-pathway related	57.89	22 of 38
66794	sulfate reduction	53.85	7 of 13
66794	oxidative phosphorylation	52.75	48 of 91
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	degradation of pentoses	50	14 of 28
66794	degradation of hexoses	50	9 of 18
66794	arginine metabolism	50	12 of 24
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	pantothenate biosynthesis	50	3 of 6
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	histidine metabolism	44.83	13 of 29
66794	nitrate assimilation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	ascorbate metabolism	40.91	9 of 22
66794	carotenoid biosynthesis	40.91	9 of 22
66794	glycine metabolism	40	4 of 10
66794	coenzyme M biosynthesis	40	4 of 10
66794	creatinine degradation	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	chlorophyll metabolism	38.89	7 of 18
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	vitamin B6 metabolism	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	polyamine pathway	34.78	8 of 23
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	CMP-KDO biosynthesis	25	1 of 4

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
19718	+	+	-	-	-	-	-	-	-	+	-	not determinedn.d.	+	-	-	+	+	+	+	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19718	not determinedn.d.	+	+	+	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Patient
#Host Body-Site	#Oral cavity and airways

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
15640	patient, maxillary sinus lavage	Riyadh, King Faisal Hospital	Saudi Arabia	SAU	Asia
61693	Human maxillary sinus lavage,19-yr-old woman	Riyadh	Saudi Arabia	SAU	Asia
122244	Human, Sinus lavage fluid	Riyadh	Saudi Arabia	SAU	Asia	2002

Taxonmaps

69479

Global distribution of 16S sequence EU274642 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	382
Soil Samples	881
Animal Samples	203
Plant Samples	54
Total Samples	1520

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
15640	yes, in single cases	1	Risk group (German classification) According to TRBA 466
122244		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	MriyDSM45176v1 assembly for Mycobacterium riyadhense DSM 45176	complete	GCA_963853645			486698	97.36
66792	ASM2582173v1 assembly for Mycobacterium riyadhense DSM 45176	scaffold	GCA_025821735	486698.24	8114807509	486698	31.43
66792	ASM210184v1 assembly for Mycobacterium riyadhense DSM 45176	contig	GCA_002101845	486698.3	2865423940	486698	23.67

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15640	Mycobacterium riyadhense strain NLA000201958 16S ribosomal RNA gene, partial sequence	EU274642	1475		486698

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycobacterium riyadhense DSM 45176
NCBI: GCA_025821735

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	51.60	no
125439	motility	BacteriaNetⓘ	no	91.40	no
125439	gram_stain	BacteriaNetⓘ	positive	96.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium riyadhense strain DSM 45176
PATRIC: 486698.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.76	no
125438	anaerobic	anaerobicⓘ	no	96.83	no
125438	spore-forming	spore-formingⓘ	no	64.02	no
125438	aerobic	aerobicⓘ	yes	74.56	yes
125438	thermophilic	thermophileⓘ	no	94.98	no
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genomic and phenotypic characterization of Mycobacterium tuberculosis' closest-related non-tuberculous mycobacteria.	Sous C, Frigui W, Pawlik A, Sayes F, Ma L, Cokelaer T, Brosch R.	Microbiol Spectr	10.1128/spectrum.04126-23	2024
Pathogenicity	Evolution and emergence of Mycobacterium tuberculosis.	Orgeur M, Sous C, Madacki J, Brosch R.	FEMS Microbiol Rev	10.1093/femsre/fuae006	2024
Phylogeny	Shared Pathogenomic Patterns Characterize a New Phylotype, Revealing Transition toward Host-Adaptation Long before Speciation of Mycobacterium tuberculosis.	Sapriel G, Brosch R.	Genome Biol Evol	10.1093/gbe/evz162	2019
Enzymology	Pulmonary Isolation of Multidrug resistant "Mycobacterium simulans" and Mycobacterium tuberculosis from a patient in the Horn of Africa.	Bouzid F, Osman DA, Baptiste E, Delerce J, Hassan MO, Arreh WI, Levasseur A, Garnotel E, Drancourt M.	Sci Rep	10.1038/s41598-018-33737-9	2018
Phylogeny	Microbiological features and clinical relevance of new species of the genus Mycobacterium.	Tortoli E.	Clin Microbiol Rev	10.1128/cmr.00035-14	2014
Phylogeny	Mycobacterium riyadhense sp. nov., a non-tuberculous species identified as Mycobacterium tuberculosis complex by a commercial line-probe assay.	van Ingen J, Al-Hajoj SA, Boeree M, Al-Rabiah F, Enaimi M, de Zwaan R, Tortoli E, Dekhuijzen R, van Soolingen D	Int J Syst Evol Microbiol	10.1099/ijs.0.005629-0	2009

References

#15640	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45176
#19718	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25508	IJSEM 1049 2009 ( DOI 10.1099/ijs.0.005629-0 , PubMed 19406791 )
#29078	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25508
#61693	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58462
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122244	Collection of Institut Pasteur ; Curators of the CIP; CIP 109808
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Mycobacterium riyadhense (DSM 45176, CIP 109808, CCUG 58462)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Enzymes

Pathway annotation

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_963853645

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media