Mycobacterium immunogenum (DSM 45595, ATCC 700505, BH 29)

Name: Mycobacterium immunogenum (DSM 45595, ATCC 700505, BH 29)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8525

Type strain

Strain Designation BH 29, MC 779

Culture col. no. DSM 45595 ATCC 700505 BH 29 MC 779 CCUG 47286 1 more

NCBI tax ID(s) 83262

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- R. Wallace, University of Texas Health Science Center, Dept. of Microbiology and Immunology; MC 779 JCM <-- CIP 106684 <-- V. Vincent <-- R. J. Wallace MC 779 (=BH29) <-- Barnen's Hosp., Saint-Louis, MO, USA.

Links

Mycobacterium immunogenum BH 29 is a bacterium that was isolated from BAL fluid.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 43966

CT1998-01289,ATCC 700505,ATCC 700506,CIP 106684,CCUG 47286,JCM 12691,DSM 45594,DSM 45595,DSM 44764

@ref 20215

Last LPSN update 2026-05-29 08:26:53

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium immunogenum

Full scientific name Mycobacterium immunogenum Wilson et al. 2001

Synonyms (1)

Mycobacteroides immunogenum

BacDive ID	Other strains from **Mycobacterium immunogenum** (2)	Type strain
8524	M. immunogenum MC 1991, MN 3744, DSM 44764, CIP 106684, ...
151772	M. immunogenum CCUG 44834

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125438	positive	90.901
125438		92.5

Multimedia

@ref:	17738
multimedia content:	DSM_45595.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45595.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17738	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
120057	CIP Medium 55		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
17738	positive	growth	37
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	90.924

Spore formation

@ref	Spore formation	Confidence
125439		97.161

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Patient
#Host Body Product	#Fluids

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
17738	BAL fluid	Missouri, St. Louis	USA	USA	North America	38.627	-90.1994 38.627/-90.1994
67770	Bronchoalveolar lavage fluid	MO	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence HE654001 (>99% sequence identity) for Mycobacteroides from Microbeatlas

Aquatic Samples	6199
Soil Samples	7046
Animal Samples	7007
Plant Samples	1742
Total Samples	21994

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17738	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM160572v1 assembly for Mycobacteroides immunogenum CCUG 47286	complete	GCA_001605725		2687453416	83262	98.67
66792	ASM201355v1 assembly for Mycobacteroides immunogenum MC 779	contig	GCA_002013555	83262.33	8032933329	83262	73.03
67770	ASM210166v1 assembly for Mycobacteroides immunogenum ATCC 700505	contig	GCA_002101665	83262.34	8117575720	83262	70.43
66792	ASM2582294v1 assembly for Mycobacteroides immunogenum DSM 45595	scaffold	GCA_025822945	83262.48	8115499558	83262	70

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Mycobacterium immunogenum ATCC 700506 16S ribosomal RNA gene and 16S-23S internal transcribed spacer, partial sequence	AY497531	263	83262
20218	Mycobacterium immunogenum 16S ribosomal RNA gene, partial sequence	AY438071	540	83262
20218	Mycobacteroides immunogenum strain CIP 106684 16S ribosomal RNA gene, partial sequence	AY457080	1482	83262
20218	Mycobacterium immunogenum 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY593977	267	83262
20218	Mycobacterium immunogenum partial 16S rRNA gene, type strain DSM 45595T	HE654001	1512	83262
20218	Mycobacterium immunogen 16S rRNA gene, partial	AJ011771	1411	83262
124043	Mycobacteroides immunogenum culture CCUG:47286 16S ribosomal RNA gene, partial sequence.	PP095663	1366	83262

GC content

@ref	GC-content (mol%)	Method
67770	64.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM160572v1 assembly for Mycobacteroides immunogenum CCUG 47286
NCBI: GCA_001605725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.92	no
125439	gram_stain	BacteriaNetⓘ	positive	41.98	no
125439	motility	BacteriaNetⓘ	yes	41.92	no
125439	spore_formation	BacteriaNetⓘ	no	97.16	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium immunogenum strain ATCC 700505
PATRIC: 83262.34

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.90	no
125438	anaerobic	anaerobicⓘ	no	96.83	no
125438	aerobic	aerobicⓘ	yes	86.76	no
125438	spore-forming	spore-formingⓘ	no	63.56	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
Enzymology	An outbreak of keratitis caused by Mycobacterium immunogenum.	Sampaio JL, Junior DN, de Freitas D, Hofling-Lima AL, Miyashiro K, Alberto FL, Leao SC.	J Clin Microbiol	10.1128/jcm.00656-06	2006
Phylogeny	Comparative genome analyses of Mycobacteroides immunogenum reveals two potential novel subspecies.	Choo SW, Rishik S, Wee WY.	Microb Genom	10.1099/mgen.0.000495	2020
Phylogeny	Characterization of mycobacteria from a major Brazilian outbreak suggests that revision of the taxonomic status of members of the Mycobacterium chelonae-M. abscessus group is needed.	Leao SC, Tortoli E, Viana-Niero C, Ueki SY, Lima KV, Lopes ML, Yubero J, Menendez MC, Garcia MJ.	J Clin Microbiol	10.1128/jcm.00808-09	2009
Genetics	Complete genome sequence of Mycobacterium immunogenum strain C14-1.MIM isolated from a hospitalized lung transplant recipient.	Jia F, Nick SE, Davidson RM, Baker AW.	Microbiol Resour Announc	10.1128/mra.00618-23	2023
Phylogeny	Variation among human, veterinary and environmental Mycobacterium chelonae-abscessus complex isolates observed using core genome phylogenomic analysis, targeted gene comparison, and anti-microbial susceptibility patterns.	Fogelson SB, Camus AC, Lorenz WW, Vasireddy R, Vasireddy S, Smith T, Brown-Elliott BA, Wallace RJ, Hasan NA, Reischl U, Sanchez S.	PLoS One	10.1371/journal.pone.0214274	2019
	Detection of Mixed Populations of Clarithromycin-Susceptible and -Resistant Mycobacterium abscessus Strains.	Shallom SJ, Zelazny AM.	J Clin Microbiol	10.1128/jcm.01694-21	2022
Genetics	Complete Genome Sequence of the Mycobacterium immunogenum Type Strain CCUG 47286.	Jaen-Luchoro D, Segui C, Aliaga-Lozano F, Salva-Serra F, Busquets A, Gomila M, Ramirez A, Ruiz M, Moore ER, Lalucat J, Bennasar-Figueras A	Genome Announc	10.1128/genomeA.00401-16	2016

References

#17738	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45595
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120057	Collection of Institut Pasteur ; Curators of the CIP; CIP 106684
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium immunogenum (DSM 45595, ATCC 700505, BH 29)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001605725

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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