Mycobacterium austroafricanum (CCUG 55853, LMG 19257, CIP 107822)

Name: Mycobacterium austroafricanum (CCUG 55853, LMG 19257, CIP 107822)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8515

Type strain

Strain Designation PYR-1

Culture col. no. CCUG 55853 LMG 19257 CIP 107822 JCM 13017 KCTC 9966 4 more

NCBI tax ID(s) 39687

Special Collections DSMZ CCUG JCM KCTC CIP Wink compendium

History DSMZ <- W. Franklin; PYR-1 JCM <-- KCTC 9966 <-- S. B. Kim <-- D. D. Paine PYR-1. CIP <- 2003, C. E. Cerniglia, Nat. Cent. Toxicol., Jefferson, USA: strain PYR-1

Links

Mycobacterium austroafricanum PYR-1 is an obligate aerobe, rod-shaped bacterium that was isolated from estuarine sediments polluted with petrols.

rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13223

LMG 19257,DSM 7251,CT2025-00092,NRRL B-24157,KCTC 9966,JCM 13017,CIP 107822,CCUG 55853

@ref 20215

Last LPSN update 2026-05-29 08:26:53

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium austroafricanum

Full scientific name Mycobacterium austroafricanum Tsukamura et al. 1983

Synonyms (3)

Mycolicibacterium vanbaalenii
Mycobacterium vanbaalenii
Mycolicibacterium austroafricanum

BacDive ID	Other strains from **Mycobacterium austroafricanum** (3)	Type strain
8448	M. austroafricanum E9789-SA 12441, SA12441, 9789, 14 150 0001, ... (type strain)
8334	M. austroafricanum JOB-5, DSM 14262, ATCC 29678, CIP 105723
8449	M. austroafricanum E 9790-SA 12442, DSM 44192, ATCC 33465

Morphology

Cell morphology

@ref	Cell shape	Confidence	Gram stain
123792	rod-shaped
125439		94.408
125439		98.263	positive

Colony morphology

@ref	Colony color	Incubation period	Medium used
20199	Golden yellow (1004)	10-14 days	5006
20199	Golden yellow (1004)	10-14 days	MB7H10
20199	Golden yellow (1004)	10-14 days	MB7H11

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3073	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
3073	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
3073	PLATES WITH FLUORANTHENE (DSMZ Medium 462a)	Medium recipe at MediaDive	Name: PLATES WITH FLUORANTHENE (DSMZ Medium 462a) Composition: Na2HPO4 2.44 g/l Fluoranthene 2.0 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l Pyridoxamine 0.000125 g/l ZnSO4 x 7 H2O 0.0001 g/l Vitamin B12 5e-05 g/l Nicotinic acid 5e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l Thiamine-HCl x 2 H2O 2.5e-05 g/l p-Aminobenzoate 2.5e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Calcium pantothenate 1.25e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Biotin 5e-06 g/l Distilled water
3073	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
20199	MB7H10		Name: Middlebrook 7H10 (MB7H10) Broth Base Composition: amount in percent Middlebrook 7H10 Agar 1.9% Glycerol 0.5% OADC-Enrichment in ml (NL5633) 10ml Comments: Add broth base and glycerol to ddh2O. Adjust volumes. Autoclave. Cool to 42°C. Add OADC-stock. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria OADC stock solution old broth-name: OADC-Stock Composition: Bovine Serum Albumin, fraction V 5 % 1% Oleic Acid in 0.2N NaOH 5ml Glucose 2 % NaCl 0.85 % Comments: Melt 1% Oleic Acid in 65°C water bath. Dissolve all ingredients in 700ml of ddH2O. Adjust volume to 1L. Filter sterilize and store at 4°C. -To make 1% Oleic Acid in 0.2N NaOH: Dissolve 5g oleic acid (ampule) in 500ml 0.2N NaOH (300ml ddH2O + 20ml NaOH + adjust volume to 500ml). Heat solution to 55°C for oleic acid to melt. Store at -20°C in 50ml aliquots. There is no need to sterilize this. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria
20199	MB7H11		Name: Middlebrook 7H11 (MB7H11) Broth Base Composition: Middlebrook 7H11 Agar 2% Glycerol 0.5% OADC-Enrichment 10ml Comments: Add broth base and glycerol to ddH2O. Adjust volumes. Autoclave. Cool to 42°C. Add OADC-Stock. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria OADC stock solution old broth-name: OADC-Stock Composition: Bovine Serum Albumin, fraction V 5 % 1% Oleic Acid in 0.2N NaOH 5ml Glucose 2 % NaCl 0.85 % Comments: Melt 1% Oleic Acid in 65°C water bath. Dissolve all ingredients in 700ml of ddH2O. Adjust volume to 1L. Filter sterilize and store at 4°C. -To make 1% Oleic Acid in 0.2N NaOH: Dissolve 5g oleic acid (ampule) in 500ml 0.2N NaOH (300ml ddH2O + 20ml NaOH + adjust volume to 500ml). Heat solution to 55°C for oleic acid to melt. Store at -20°C in 50ml aliquots. There is no need to sterilize this. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria
20199	5006		Medium: 5006 Name: Composition (g/l) Sucrose 3,0 Dextrin 15,0 Meat extract 1,0 Yeast extract 2,0 Tryptone soy broth (Oxoid) 5,0 NaCl 0,5 K2HPO4 0,5 MgSO4 x 7 H2O 0,5 FeSO4 x 7 H2O 0,01 Agar 20,0 Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7,3 Usage: Maintenance Organisms: All Actinomycetes
36373	MEDIUM 55 - for Mycobacterium
3073	MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)	Medium recipe at MediaDive	Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
123792	CIP Medium 55	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3073	positive	growth	25
3073	positive	growth	30
20199	positive	optimum	30
36373	positive	growth	30
67770	positive	growth	28
123792	positive	growth	30
123792	negative	growth	10
123792	negative	growth	22
123792	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
123792	obligate aerobe
125439	obligate aerobe	98.573

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
123792	606565 ChEBI	hippurate	-	hydrolysis
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
123792	17632 ChEBI	nitrate	+	reduction
123792	17632 ChEBI	nitrate	-	respiration
123792	16301 ChEBI	nitrite	-	reduction
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
123792	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123792	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123792	amylase	+
123792	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
123792	caseinase	-	3.4.21.50
123792	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
123792	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123792	gamma-glutamyltransferase	-	2.3.2.2
123792	gelatinase	-
68379	gelatinase	-		from API Coryne
123792	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
123792	lipase	-
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
123792	oxidase	-
123792	protease	+
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
123792	tween esterase	+
123792	urease	+	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne
68382	valine arylamidase	+		from API zym

Fatty acid profile

Metadata FA analysis

@ref

60758

Fatty acid	Percentage	ECL
C14:0 N alcohol	19.9	13.524
C17:1 ω7c	18.1	16.818
C16:0	15.2	16
C18:1 ω9c	12.2	17.769
C16:1 ω7c/C15:0 ISO 2OH	9.6	15.85
C20:0 alcohol (C20:0 2OH alc)	8.4	18.835
C14:0	5.4	14
TBSA 10Me18:0	3.7	18.392
C18:2 ω6,9c/C18:0 ANTE	1.9	17.724
Unidentified	1.4	11.502
C16:1 ω9c	1.3	15.774
Unidentified	1.2	13.208
C18:0	0.6	18
C16:0 anteiso	0.5	15.717
Unidentified	0.5	14.807

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
20199	-	+	+/-	-	-	-	+	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20199	not determinedn.d.	-	+	+	-	+	+	+	+	-	+	-	-	-	-	+	-	-	-	-
123792	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	+	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
123792	not determinedn.d.	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Oil reservoir
#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
3073	estuarine sediments polluted with petrols	Texas	USA	USA	North America
60758	Estuarine sediments polluted with petrols		USA	USA	North America
67770	Sediment in an oil-contaminated site in Redfish Bay	TX	USA	USA	North America
123792	Environment, Oil contaminated sediment	Redfish bay, Texas	United States of America	USA	North America	1988

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3073	1	Risk group (German classification) According to TRBA 466
20199	1	German classification According to TRBA 466
123792	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1530v1 assembly for Mycolicibacterium vanbaalenii PYR-1	complete	GCA_000015305	350058.8	639633044	350058	99.37
66792	ASM2582156v1 assembly for Mycolicibacterium vanbaalenii PYR-1 DSM 7251	scaffold	GCA_025821565	350058.81	8113845632	350058	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Mycobacterium vanbaalenii 16S ribosomal RNA gene, partial sequence	AY438079	542		350058
3073	Mycobacterium vanbaalenii partial 16S rRNA gene and 16S-23S intergenic spacer (IGS), type strain DSM 7251	X84977	1908		350058

GC content

@ref	GC-content (mol%)	Method
3073	66.6
3073	67.8	sequence analysis
67770	67.8	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1530v1 assembly for Mycolicibacterium vanbaalenii PYR-1
NCBI: GCA_000015305

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.57	no
125439	gram_stain	BacteriaNetⓘ	positive	98.26	no
125439	motility	BacteriaNetⓘ	no	94.41	no
125439	spore_formation	BacteriaNetⓘ	yes	77.88	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium vanbaalenii PYR-1
PATRIC: 350058.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.05	no
125438	anaerobic	anaerobicⓘ	no	98.01	yes
125438	spore-forming	spore-formingⓘ	no	58.19	no
125438	aerobic	aerobicⓘ	yes	90.00	yes
125438	thermophilic	thermophileⓘ	no	97.40	yes
125438	flagellated	motile2+ⓘ	no	87.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
	Bioremediation of PAH-contaminated shooting range soil using integrated approaches.	Wolf DC, Cryder Z, Khoury R, Carlan C, Gan J	Sci Total Environ	10.1016/j.scitotenv.2020.138440	2020
	Humic Acid Can Enhance the Mineralization of Phenanthrene Sorbed on Biochars.	Zhang M, Shen X, Zhang H, Werner D, Wang B, Yang Y, Tao S, Wang X	Environ Sci Technol	10.1021/acs.est.9b05147	2019
Metabolism	Preparation of dihydroxy polycyclic aromatic hydrocarbons and activities of two dioxygenases in the phenanthrene degradative pathway.	Erwin KL, Johnson WH Jr, Meichan AJ, Whitman CP	Arch Biochem Biophys	10.1016/j.abb.2019.108081	2019
Metabolism	Soil bacterial community dynamics following surfactant addition and bioaugmentation in pyrene-contaminated soils.	Wolf DC, Cryder Z, Gan J	Chemosphere	10.1016/j.chemosphere.2019.05.145	2019
Metabolism	Influence of rhamnolipid biosurfactant and Brij-35 synthetic surfactant on (14)C-Pyrene mineralization in soil.	Wolf DC, Gan J	Environ Pollut	10.1016/j.envpol.2018.10.031	2018
Metabolism	A comparative intracellular proteomic profiling of Pseudomonas aeruginosa strain ASP-53 grown on pyrene or glucose as sole source of carbon and identification of some key enzymes of pyrene biodegradation pathway.	Mukherjee AK, Bhagowati P, Biswa BB, Chanda A, Kalita B	J Proteomics	10.1016/j.jprot.2017.07.020	2017
Metabolism	Simultaneous Biodegradation of Polyaromatic Hydrocarbons by a Stenotrophomonas sp: Characterization of nid Genes and Effect of Surfactants on Degradation.	Kumari S, Regar RK, Bajaj A, Ch R, Satyanarayana GNV, Mudiam MKR, Manickam N	Indian J Microbiol	10.1007/s12088-016-0612-6	2016
Metabolism	Microbial Transformation of Multiwalled Carbon Nanotubes by Mycobacterium vanbaalenii PYR-1.	You Y, Das KK, Guo H, Chang CW, Navas-Moreno M, Chan JW, Verburg P, Poulson SR, Wang X, Xing B, Yang Y	Environ Sci Technol	10.1021/acs.est.6b04523	2017
	[Polymorphism of the bphA genes in bacteria destructing biphenyl/chlorinated biphenils].	Shumkova ES, Egorova DO, Boronnikova SV, Plotnikova EG	Mol Biol (Mosk)	10.7868/S0026898415040151	2015
Metabolism	Dynamic Response of Mycobacterium vanbaalenii PYR-1 to BP Deepwater Horizon Crude Oil.	Kim SJ, Kweon O, Sutherland JB, Kim HL, Jones RC, Burback BL, Graves SW, Psurny E, Cerniglia CE	Appl Environ Microbiol	10.1128/AEM.00730-15	2015
Metabolism	Metabolic engineering of Arabidopsis for remediation of different polycyclic aromatic hydrocarbons using a hybrid bacterial dioxygenase complex.	Peng R, Fu X, Tian Y, Zhao W, Zhu B, Xu J, Wang B, Wang L, Yao Q	Metab Eng	10.1016/j.ymben.2014.09.005	2014
Metabolism	Pleiotropic and epistatic behavior of a ring-hydroxylating oxygenase system in the polycyclic aromatic hydrocarbon metabolic network from Mycobacterium vanbaalenii PYR-1.	Kweon O, Kim SJ, Kim DW, Kim JM, Kim HL, Ahn Y, Sutherland JB, Cerniglia CE	J Bacteriol	10.1128/JB.01945-14	2014
Pathogenicity	Mid-infrared spectroscopic assessment of nanotoxicity in gram-negative vs. gram-positive bacteria.	Heys KA, Riding MJ, Strong RJ, Shore RF, Pereira MG, Jones KC, Semple KT, Martin FL	Analyst	10.1039/c3an01649h	2013
Metabolism	Functional robustness of a polycyclic aromatic hydrocarbon metabolic network examined in a nidA aromatic ring-hydroxylating oxygenase mutant of Mycobacterium vanbaalenii PYR-1.	Kim SJ, Song J, Kweon O, Holland RD, Kim DW, Kim J, Yu LR, Cerniglia CE	Appl Environ Microbiol	10.1128/AEM.07798-11	2012
Proteome	Polycyclic aromatic hydrocarbon metabolic network in Mycobacterium vanbaalenii PYR-1.	Kweon O, Kim SJ, Holland RD, Chen H, Kim DW, Gao Y, Yu LR, Baek S, Baek DH, Ahn H, Cerniglia CE	J Bacteriol	10.1128/JB.00215-11	2011
Pathogenicity	Microbially mediated O-methylation of bisphenol A results in metabolites with increased toxicity to the developing zebrafish (Danio rerio) embryo.	McCormick JM, Van Es T, Cooper KR, White LA, Haggblom MM	Environ Sci Technol	10.1021/es200588w	2011
Metabolism	Influence of single-walled carbon nanotubes on microbial availability of phenanthrene in sediment.	Cui XY, Jia F, Chen YX, Gan J	Ecotoxicology	10.1007/s10646-011-0684-3	2011
Metabolism	Advances in the field of high-molecular-weight polycyclic aromatic hydrocarbon biodegradation by bacteria.	Kanaly RA, Harayama S	Microb Biotechnol	10.1111/j.1751-7915.2009.00130.x	2009
Metabolism	Biodegradation of pyrene in sand, silt and clay fractions of sediment.	Cui X, Hunter W, Yang Y, Chen Y, Gan J	Biodegradation	10.1007/s10532-010-9399-z	2010
Metabolism	Substrate specificity and structural characteristics of the novel Rieske nonheme iron aromatic ring-hydroxylating oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1.	Kweon O, Kim SJ, Freeman JP, Song J, Baek S, Cerniglia CE	mBio	10.1128/mBio.00135-10	2010
Phylogeny	Characterization of a pyrene-degrading Mycobacterium sp. strain CH-2.	Churchill PF, Morgan AC, Kitchens E	J Environ Sci Health B	10.1080/03601230802388801	2008
Enzymology	Biotransformation of acridine by Mycobacterium vanbaalenii.	Sutherland JB, Heinze TM, Pearce MG, Deck J, Williams AJ, Freeman JP	Environ Toxicol Chem	10.1897/08-206.1	2009
Metabolism	Genomic analysis of polycyclic aromatic hydrocarbon degradation in Mycobacterium vanbaalenii PYR-1.	Kim SJ, Kweon O, Jones RC, Edmondson RD, Cerniglia CE	Biodegradation	10.1007/s10532-008-9189-z	2008
Metabolism	A polyomic approach to elucidate the fluoranthene-degradative pathway in Mycobacterium vanbaalenii PYR-1.	Kweon O, Kim SJ, Jones RC, Freeman JP, Adjei MD, Edmondson RD, Cerniglia CE	J Bacteriol	10.1128/JB.00128-07	2007
Metabolism	Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology.	Kim SJ, Kweon O, Jones RC, Freeman JP, Edmondson RD, Cerniglia CE	J Bacteriol	10.1128/JB.01310-06	2006
Metabolism	Molecular cloning and expression of genes encoding a novel dioxygenase involved in low- and high-molecular-weight polycyclic aromatic hydrocarbon degradation in Mycobacterium vanbaalenii PYR-1.	Kim SJ, Kweon O, Freeman JP, Jones RC, Adjei MD, Jhoo JW, Edmondson RD, Cerniglia CE	Appl Environ Microbiol	10.1128/AEM.72.2.1045-1054.2006	2006
Enzymology	Molecular characterization of cytochrome P450 genes in the polycyclic aromatic hydrocarbon degrading Mycobacterium vanbaalenii PYR-1.	Brezna B, Kweon O, Stingley RL, Freeman JP, Khan AA, Polek B, Jones RC, Cerniglia CE	Appl Microbiol Biotechnol	10.1007/s00253-005-0190-8	2005
Metabolism	Degradation of benz[a]anthracene by Mycobacterium vanbaalenii strain PYR-1.	Moody JD, Freeman JP, Cerniglia CE	Biodegradation	10.1007/s10532-004-7217-1	2005
Metabolism	Effects of pH on the degradation of phenanthrene and pyrene by Mycobacterium vanbaalenii PYR-1.	Kim YH, Freeman JP, Moody JD, Engesser KH, Cerniglia CE	Appl Microbiol Biotechnol	10.1007/s00253-004-1796-y	2004
Metabolism	Evidence for the existence of PAH-quinone reductase and catechol-O-methyltransferase in Mycobacterium vanbaalenii PYR-1.	Kim YH, Moody JD, Freeman JP, Brezna B, Engesser KH, Cerniglia CE	J Ind Microbiol Biotechnol	10.1007/s10295-004-0178-x	2004
Genetics	Identification of proteins induced by polycyclic aromatic hydrocarbon in Mycobacterium vanbaalenii PYR-1 using two-dimensional polyacrylamide gel electrophoresis and de novo sequencing methods.	Kim SJ, Jones RC, Cha CJ, Kweon O, Edmondson RD, Cerniglia CE	Proteomics	10.1002/pmic.200400872	2004
Metabolism	Novel organization of genes in a phthalate degradation operon of Mycobacterium vanbaalenii PYR-1.	Stingley RL, Brezna B, Khan AA, Cerniglia CE	Microbiology (Reading)	10.1099/mic.0.27263-0	2004
Metabolism	Molecular characterization of a phenanthrene degradation pathway in Mycobacterium vanbaalenii PYR-1.	Stingley RL, Khan AA, Cerniglia CE	Biochem Biophys Res Commun	10.1016/j.bbrc.2004.07.089	2004
Metabolism	Two distinct gene clusters encode pyrene degradation in Mycobacterium sp. strain S65.	Sho M, Hamel C, Greer CW	FEMS Microbiol Ecol	10.1016/j.femsec.2004.01.011	2004
Metabolism	Degradation of benzo[a]pyrene by Mycobacterium vanbaalenii PYR-1.	Moody JD, Freeman JP, Fu PP, Cerniglia CE	Appl Environ Microbiol	10.1128/AEM.70.1.340-345.2004	2004
Metabolism	Regio- and stereoselective metabolism of 7,12-dimethylbenz[a]anthracene by Mycobacterium vanbaalenii PYR-1.	Moody JD, Fu PP, Freeman JP, Cerniglia CE	Appl Environ Microbiol	10.1128/AEM.69.7.3924-3931.2003	2003
Enzymology	Molecular characterization of dioxygenases from polycyclic aromatic hydrocarbon-degrading Mycobacterium spp.	Brezna B, Khan AA, Cerniglia CE	FEMS Microbiol Lett	10.1016/S0378-1097(03)00328-8	2003
Phylogeny	Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Mycobacterium sp. strain PYR-1, as Mycobacterium vanbaalenii sp. nov.	Khan AA, Kim SJ, Paine DD, Cerniglia CE	Int J Syst Evol Microbiol	10.1099/00207713-52-6-1997	2002

References

#3073	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7251
#20199	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36373	; Curators of the CIP;
#60758	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55853
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#123792	Collection of Institut Pasteur ; Curators of the CIP; CIP 107822
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium austroafricanum (CCUG 55853, LMG 19257, CIP 107822)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

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Physiology and metabolism

Oxygen tolerance

Metabolite utilization

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API coryne

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API biotype100

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Genome browser: GCA_000015305

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