Mycobacterium saskatchewanense (DSM 44616, ATCC BAA-544, CIP 108114)

Name: Mycobacterium saskatchewanense (DSM 44616, ATCC BAA-544, CIP 108114)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8509

Type strain

Culture col. no. DSM 44616 ATCC BAA-544 CIP 108114 NRCM 00-250 KCTC 9978 1 more

NCBI tax ID(s) 220927

Special Collections DSMZ JCM KCTC CIP Wink compendium Literature strains

History DSMZ <- C. Turenne; NRCM 00-250 <- D. Cheke JCM <-- KCTC 9978 <-- C. Y. Turenne 00-250. CIP <- 2003, C.Y. Turenne, Nat. Microbiol. Lab., Winnipeg, Canada: strain NRCM 00-250 <- K. Williams

Links

Mycobacterium saskatchewanense DSM 44616 is an obligate aerobe, rod-shaped bacterium that was isolated from sputum.

rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 127875

ATCC BAA-544,CIP 108114,DSM 44616,JCM 13016,KCTC 9978

@ref 20215

Last LPSN update 2026-05-29 08:26:53

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium saskatchewanense

Full scientific name Mycobacterium saskatchewanense Turenne et al. 2004

Morphology

Cell morphology

@ref	Cell shape	Motility
29954	rod-shaped
122492	rod-shaped

Colony morphology

@ref	Colony color	Incubation period	Medium used
19870	Beige	10-14 days	5006
19870	Beige	10-14 days	MB7H10
19870	Pale yellow	10-14 days	MB7H11

Pigmentation

29954

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11929	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
19870	MB7H10		Name: Middlebrook 7H10 (MB7H10) Broth Base Composition: amount in percent Middlebrook 7H10 Agar 1.9% Glycerol 0.5% OADC-Enrichment in ml (NL5633) 10ml Comments: Add broth base and glycerol to ddh2O. Adjust volumes. Autoclave. Cool to 42°C. Add OADC-stock. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria OADC stock solution old broth-name: OADC-Stock Composition: Bovine Serum Albumin, fraction V 5 % 1% Oleic Acid in 0.2N NaOH 5ml Glucose 2 % NaCl 0.85 % Comments: Melt 1% Oleic Acid in 65°C water bath. Dissolve all ingredients in 700ml of ddH2O. Adjust volume to 1L. Filter sterilize and store at 4°C. -To make 1% Oleic Acid in 0.2N NaOH: Dissolve 5g oleic acid (ampule) in 500ml 0.2N NaOH (300ml ddH2O + 20ml NaOH + adjust volume to 500ml). Heat solution to 55°C for oleic acid to melt. Store at -20°C in 50ml aliquots. There is no need to sterilize this. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria
19870	MB7H11		Name: Middlebrook 7H11 (MB7H11) Broth Base Composition: Middlebrook 7H11 Agar 2% Glycerol 0.5% OADC-Enrichment 10ml Comments: Add broth base and glycerol to ddH2O. Adjust volumes. Autoclave. Cool to 42°C. Add OADC-Stock. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria OADC stock solution old broth-name: OADC-Stock Composition: Bovine Serum Albumin, fraction V 5 % 1% Oleic Acid in 0.2N NaOH 5ml Glucose 2 % NaCl 0.85 % Comments: Melt 1% Oleic Acid in 65°C water bath. Dissolve all ingredients in 700ml of ddH2O. Adjust volume to 1L. Filter sterilize and store at 4°C. -To make 1% Oleic Acid in 0.2N NaOH: Dissolve 5g oleic acid (ampule) in 500ml 0.2N NaOH (300ml ddH2O + 20ml NaOH + adjust volume to 500ml). Heat solution to 55°C for oleic acid to melt. Store at -20°C in 50ml aliquots. There is no need to sterilize this. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria
19870	5006		Medium: 5006 Name: Composition (g/l) Sucrose 3,0 Dextrin 15,0 Meat extract 1,0 Yeast extract 2,0 Tryptone soy broth (Oxoid) 5,0 NaCl 0,5 K2HPO4 0,5 MgSO4 x 7 H2O 0,5 FeSO4 x 7 H2O 0,01 Agar 20,0 Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7,3 Usage: Maintenance Organisms: All Actinomycetes
37410	MEDIUM 55 - for Mycobacterium
122492	CIP Medium 55	Medium recipe at CIP
122492	CIP Medium 267	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11929	positive	growth	37
19870	positive	optimum	37
29954	positive	growth	25-37
29954	positive	optimum	31
37410	positive	growth	37
67770	positive	growth	37
122492	positive	growth	30-37
122492	negative	growth	10
122492	negative	growth	22
122492	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
122492	obligate aerobe
125439	obligate aerobe	97.711

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	+	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	+	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
122492	606565 ChEBI	hippurate	-	hydrolysis
68379	17716 ChEBI	lactose	+	fermentation	from API Coryne
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
122492	17632 ChEBI	nitrate	-	reduction
122492	17632 ChEBI	nitrate	-	respiration
122492	16301 ChEBI	nitrite	-	reduction
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
29954	53426 ChEBI	tween 80	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122492	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
122492	beta-galactosidase	-	3.2.1.23
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
29954	catalase	+	1.11.1.6
122492	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122492	gamma-glutamyltransferase	+	2.3.2.2
122492	gelatinase	-
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122492	oxidase	-
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
122492	urease	+	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	starch degradation	100	10 of 10
66794	adipate degradation	100	2 of 2
66794	butanoate fermentation	100	4 of 4
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	cyanate degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	glycogen metabolism	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	acetate fermentation	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	cardiolipin biosynthesis	100	7 of 7
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	propanol degradation	100	7 of 7
66794	acetoin degradation	100	3 of 3
66794	hydrogen production	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	ppGpp biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ceramide biosynthesis	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	ethanol fermentation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	photosynthesis	100	14 of 14
66794	enterobactin biosynthesis	100	3 of 3
66794	taurine degradation	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	octane oxidation	100	3 of 3
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	propionate fermentation	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	vitamin B12 metabolism	88.24	30 of 34
66794	dTDPLrhamnose biosynthesis	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	purine metabolism	87.23	82 of 94
66794	flavin biosynthesis	86.67	13 of 15
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	citric acid cycle	85.71	12 of 14
66794	glutathione metabolism	85.71	12 of 14
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	pentose phosphate pathway	81.82	9 of 11
66794	factor 420 biosynthesis	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	lipid metabolism	77.42	24 of 31
66794	sulfate reduction	76.92	10 of 13
66794	urea cycle	76.92	10 of 13
66794	gluconeogenesis	75	6 of 8
66794	toluene degradation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	tryptophan metabolism	73.68	28 of 38
66794	pyrimidine metabolism	73.33	33 of 45
66794	metabolism of disaccharids	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	vitamin B1 metabolism	69.23	9 of 13
66794	oxidative phosphorylation	67.03	61 of 91
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	sphingosine metabolism	66.67	4 of 6
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	3-phenylpropionate degradation	66.67	10 of 15
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	non-pathway related	65.79	25 of 38
66794	histidine metabolism	65.52	19 of 29
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	tyrosine metabolism	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	cysteine metabolism	61.11	11 of 18
66794	gallate degradation	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	creatinine degradation	60	3 of 5
66794	3-chlorocatechol degradation	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	carotenoid biosynthesis	59.09	13 of 22
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	methionine metabolism	57.69	15 of 26
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	degradation of sugar acids	56	14 of 25
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	phenol degradation	55	11 of 20
66794	cholesterol biosynthesis	54.55	6 of 11
66794	ascorbate metabolism	54.55	12 of 22
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	degradation of pentoses	50	14 of 28
66794	degradation of hexoses	50	9 of 18
66794	coenzyme M biosynthesis	50	5 of 10
66794	cyclohexanol degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	arginine metabolism	50	12 of 24
66794	phenylmercury acetate degradation	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	resorcinol degradation	50	1 of 2
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	lipid A biosynthesis	44.44	4 of 9
66794	chlorophyll metabolism	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	polyamine pathway	43.48	10 of 23
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	D-cycloserine biosynthesis	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	carnitine metabolism	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	d-xylose degradation	36.36	4 of 11
66794	sulfoquinovose degradation	33.33	1 of 3
66794	methanogenesis from CO2	33.33	4 of 12
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	vitamin E metabolism	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	arachidonic acid metabolism	22.22	4 of 18
66794	daunorubicin biosynthesis	22.22	2 of 9

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
19870	+	+	+	-	-	-	-	-	-	+/-	+	not determinedn.d.	+	+	-	+	+	+	+	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19870	not determinedn.d.	-	+	+	-	+	+	-	+	-	+	+	-	-	-	+	-	+	-	-
122492	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
11929	sputum		Saskatchewan	Canada	CAN	North America
67770	Sputum of a patient with bronchiectasis	Homo sapiens	Saskatchewan	Canada	CAN	North America
122492	Human, Sputum	Homo sapiens	Saskatchewan	Canada	CAN	North America	2000

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11929	2	Risk group (German classification) According to TRBA 466
19870	2	Risk group (German classification) According to TRBA 466
122492	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1072910v1 assembly for Mycobacterium saskatchewanense JCM 13016	complete	GCA_010729105	220927.8	8110600102	220927	95.02
67770	ASM210187v1 assembly for Mycobacterium saskatchewanense DSM 44616	contig	GCA_002101875	220927.3	2865429847	220927	59.94
66792	ASM2582140v1 assembly for Mycobacterium saskatchewanense DSM 44616	scaffold	GCA_025821405	220927.10		220927	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Mycobacterium saskatchewanense strain CIP 108114 16S ribosomal RNA gene, partial sequence	AY943213	481		220927
29954	Mycobacterium saskatchewanense strain NRCM 00-250 16S ribosomal RNA gene, partial sequence; and 16S-23S intergenic spacer, complete sequence	AY208856	1824		220927

GC content

@ref	GC-content (mol%)	Method
67770	68.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1072910v1 assembly for Mycobacterium saskatchewanense JCM 13016
BV-BRC: 220927.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.71	no
125439	gram_stain	BacteriaNetⓘ	positive	86.19	no
125439	motility	BacteriaNetⓘ	no	82.08	no
125439	spore_formation	BacteriaNetⓘ	no	71.55	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium saskatchewanense JCM 13016
NCBI: GCA_010729105.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.49	no
125438	anaerobic	anaerobicⓘ	no	95.87	no
125438	aerobic	aerobicⓘ	yes	78.93	yes
125438	spore-forming	spore-formingⓘ	no	56.16	no
125438	thermophilic	thermophileⓘ	no	95.00	no
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	The Presence of esat-6 and cfp10 and Other Gene Orthologs of the RD 1 Region in Non-Tuberculous Mycobacteria, Mycolicibacteria, Mycobacteroides and Mycolicibacter as Possible Impediments for the Diagnosis of (Animal) Tuberculosis	Gcebe N, Hlokwe T, Bouw A, Michel A, Rutten V.	Microorganisms		2024
Enzymology	Mycobacterium terramassiliense, Mycobacterium rhizamassiliense and Mycobacterium numidiamassiliense sp. nov., three new Mycobacterium simiae complex species cultured from plant roots.	Bouam A, Armstrong N, Levasseur A, Drancourt M.	Sci Rep	10.1038/s41598-018-27629-1	2018
Phylogeny	Mycobacterium saskatchewanense sp. nov., a novel slowly growing scotochromogenic species from human clinical isolates related to Mycobacterium interjectum and Accuprobe-positive for Mycobacterium avium complex.	Turenne CY, Thibert L, Williams K, Burdz TV, Cook VJ, Wolfe JN, Cockcroft DW, Kabani A	Int J Syst Evol Microbiol	10.1099/ijs.0.02739-0	2004

References

#11929	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44616
#19870	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#26323	IJSEM 659 2004 ( DOI 10.1099/ijs.0.02739-0 , PubMed 15143004 )
#29954	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26323
#37410	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#122492	Collection of Institut Pasteur ; Curators of the CIP; CIP 108114
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium saskatchewanense (DSM 44616, ATCC BAA-544, CIP 108114)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_010729105

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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