Mycobacterium frederiksbergense (DSM 45364, JCM 13014, KCTC 19370)

Name: Mycobacterium frederiksbergense (DSM 45364, JCM 13014, KCTC 19370)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8504

Status isotype of 8499

Type strain

Strain Designation Fan9

Culture col. no. DSM 45364 JCM 13014 KCTC 19370 Fan9 KCTC 19100 1 more

NCBI tax ID(s) 117567

Special Collections DSMZ JCM KCTC

History DSMZ <- KCTC; KCTC 19100 <- DSMZ <- U. Karlson, Miljo and Engeri, Roskilde Denmark; Fan9

Links

Mycobacterium frederiksbergense Fan9 is a bacterium that was isolated from coaltar contaminated soil, farmer gas works site.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 50584

DSM 45364,DSM 44346,NRRL B-24126,KCTC 19934,CIP 107205,KCTC 19100

@ref 20215

Last LPSN update 2026-05-29 08:26:53

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium frederiksbergense

Full scientific name Mycobacterium frederiksbergense Willumsen et al. 2001

Synonyms (1)

Mycolicibacterium frederiksbergense

BacDive ID	Other strains from **Mycobacterium frederiksbergense** (3)	Type strain
8499	M. frederiksbergense FAn9, DSM 44346, KCTC 19100, NRRL B-24126 (type strain)
8502	M. frederiksbergense Fan9-2, DSM 45275
8503	M. frederiksbergense Fan 9-3, DSM 45276

Morphology

Colony morphology

16363

Incubation period8-14 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16363	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16363	positive	growth	28-37

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16363	coaltar contaminated soil, farmer gas works site	Copenhagen	Denmark	DNK	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16363	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2582214v1 assembly for Mycolicibacterium frederiksbergense DSM 45364	scaffold	GCA_025822145	117567.14	8115243504	117567	59.5

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium frederiksbergense DSM 45364
NCBI: GCA_025822145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.57	no
125438	anaerobic	anaerobicⓘ	no	95.59	no
125438	aerobic	aerobicⓘ	yes	86.69	no
125438	spore-forming	spore-formingⓘ	no	57.73	no
125438	thermophilic	thermophileⓘ	no	97.90	no
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
Phylogeny	Mycobacterium frederiksbergense sp. nov., a novel polycyclic aromatic hydrocarbon-degrading Mycobacterium species.	Willumsen P, Karlson U, Stackebrandt E, Kroppenstedt RM	Int J Syst Evol Microbiol	10.1099/00207713-51-5-1715	2001

References

#16363	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45364
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium frederiksbergense (DSM 45364, JCM 13014, KCTC 19370)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_025822145

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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