Komagataeibacter hansenii (DSM 5602, ATCC 35959, BCC 6318)

Name: Komagataeibacter hansenii (DSM 5602, ATCC 35959, BCC 6318)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 85

Type strain

Culture col. no. DSM 5602 ATCC 35959 BCC 6318 CCUG 18123 LMG 1527 8 more

NCBI tax ID(s) 1231352 436

Special Collections DSMZ CCUG JCM CIP

History <- LMG <- NCIB <- L. Shimwell <- M. Schramm NCIB 8746 <-- J. L. Shimwell strain Mutant 1 <-- M. Schramm. CIP <- 1988, NCIB <- 1956, J.L. Shimwell <- M. Schramm

Links

Komagataeibacter hansenii DSM 5602 is a bacterium that was isolated from vinegar.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 14555

LMG 1527,CCUG 18123,ATCC 35959,CIP 103110,DSM 5602,NCIMB 8746,JCM 7643,CCRC 14157,AS 1.1811,BCRC 14157,CGMCC 1.1811,VTT E-97829,VTT E-011874,BCC 6318,NBRC 14820,IFO 14820,NCIB 8746

@ref 20215

Last LPSN update 2026-02-09 11:17:47

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Komagataeibacter

Species Komagataeibacter hansenii

Full scientific name Komagataeibacter hansenii (Gosselé et al. 1983) Yamada et al. 2013

Synonyms (5)

"Komagatabacter hansenii"
Gluconoacetobacter hansenii
Gluconacetobacter hansenii
Novacetimonas hansenii
Acetobacter hansenii

BacDive ID	Other strains from **Komagataeibacter hansenii** (2)	Type strain
134216	K. hansenii RG3, LMG 23726, MTCC 6913 (type strain)
23507	K. hansenii 336, BU 336, DSM 46602, ATCC 23769, CCM 1808, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.8
125438	negative	95.771

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
40606	MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii		Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
2249	GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)	Medium recipe at MediaDive	Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water
2249	YPM MEDIUM (DSMZ Medium 360)	Medium recipe at MediaDive	Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water
119836	CIP Medium 1	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
2249	positive	growth	28
40606	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate anaerobe	95.6

Spore formation

@ref	Spore formation	Confidence
125439		98.6

Observation

67770

Observationquinones: Q-10

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Fermented
#Engineered	#Food production	#Food
#Condition	#Acidic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2249	vinegar	Jerusalem	Israel	ISR	Asia
46758	Mutant derived from vinegar isolate NCIB 8745	Jerusalem	Israel	ISR	Asia
67770	Local vinegar brewery		Israel	ISR	Asia
119836	Food, Local vinegar brew		Israel	ISR	Asia

Taxonmaps

69479

Global distribution of 16S sequence X75620 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	106
Soil Samples	119
Animal Samples	397
Plant Samples	188
Total Samples	810

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2249	1	Risk group (German classification) According to TRBA 466
119836	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM653970v1 assembly for Novacetimonas hansenii NBRC 14820	contig	GCA_006539705	436.18	8116486458	436	27.72
66792	ASM96440v1 assembly for Novacetimonas hansenii JCM 7643	scaffold	GCA_000964405	1231352.3		1231352

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Gluconacetobacter hansenii gene for 16S rRNA, partial sequence, strain: NBRC 14820	AB166736	1427	436
20218	Gluconacetobacter hansenii gene for 16S rRNA, partial sequence, strain: NBRC 14820	AB680675	1414	436
20218	Gluconacetobacter hansenii strain LMG 1527 16S ribosomal RNA gene, partial sequence	JF793986	1352	436
20218	Gluconacetobacter hansenii strain DSM 5602 16S ribosomal RNA gene, partial sequence	JF793987	1352	436
2249	Gluconacetobacter hansenii gene for 16S ribosomal RNA	X75620	1481	436

GC content

@ref	GC-content (mol%)	Method
67770	59.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Novacetimonas hansenii JCM 7643
NCBI: GCA_000964405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.60	no
125439	motility	BacteriaNetⓘ	yes	77.40	no
125439	gram_stain	BacteriaNetⓘ	negative	98.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	95.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Komagataeibacter hansenii JCM 7643 JCM 7643
NCBI: GCA_000964405.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.77	no
125438	anaerobic	anaerobicⓘ	no	88.96	no
125438	aerobic	aerobicⓘ	yes	77.41	no
125438	spore-forming	spore-formingⓘ	no	87.56	no
125438	thermophilic	thermophileⓘ	no	98.26	yes
125438	flagellated	motile2+ⓘ	no	60.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	16S rRNA in situ Hybridization Followed by Flow Cytometry for Rapid Identification of Acetic Acid Bacteria Involved in Submerged Industrial Vinegar Production.	Trcek J, Lipoglavsek L, Avgustin G.	Food Technol Biotechnol	10.17113/ftb.54.01.16.4041	2016
	Highly Stretchable Bacterial Cellulose Produced by Komagataeibacter hansenii SI1.	Cielecka I, Ryngajllo M, Maniukiewicz W, Bielecki S.	Polymers (Basel)	10.3390/polym13244455	2021
	Taxonomic heterogeneity of strains comprising Gluconacetobacter hansenii.	Navarro RR, Uchimura T, Komagata K	J Gen Appl Microbiol	10.2323/jgam.45.295	1999
Metabolism	Cellulose synthesis by Komagataeibacter rhaeticus strain P 1463 isolated from Kombucha.	Semjonovs P, Ruklisha M, Paegle L, Saka M, Treimane R, Skute M, Rozenberga L, Vikele L, Sabovics M, Cleenwerck I	Appl Microbiol Biotechnol	10.1007/s00253-016-7761-8	2016
Phylogeny	Nitrogen-fixing and cellulose-producing Gluconacetobacter kombuchae sp. nov., isolated from Kombucha tea.	Dutta D, Gachhui R	Int J Syst Evol Microbiol	10.1099/ijs.0.64638-0	2007

References

#2249	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5602
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40606	; Curators of the CIP;
#46758	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 18123
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119836	Collection of Institut Pasteur ; Curators of the CIP; CIP 103110
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Komagataeibacter hansenii (DSM 5602, ATCC 35959, BCC 6318)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_006539705

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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