Name: Komagataeibacter hansenii DSM 5602
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 85

Type strain:

Species: Komagataeibacter hansenii

Culture col. no.: DSM 5602, ATCC 35959, BCC 6318, CCUG 18123, LMG 1527, NBRC 14820, NCIMB 8746, JCM 7643, BCRC 14157, CGMCC 1.1811, CIP 103110, IFO 14820, VTT E-97829

Strain history: CIP <- 1988, NCIB <- 1956, J.L. Shimwell <- M. Schramm

NCBI tax ID(s): 1231352 (strain), 436 (species)

SI-ID 14555

LMG 1527, CCUG 18123, ATCC 35959, CIP 103110, DSM 5602, NCIMB 8746, JCM 7643, CCRC 14157, AS 1.1811, BCRC 14157, CGMCC 1.1811, VTT E-97829, VTT E-011874, BCC 6318, NBRC 14820, IFO 14820, NCIB 8746

Special Collections

Other strains from Komagataeibacter hansenii

Section

Komagataeibacter hansenii DSM 5602 is a Gram-negative bacterium that was isolated from vinegar.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Komagataeibacter*
	Species	**Komagataeibacter hansenii**
	Full Scientific Name (LPSN)	Komagataeibacter hansenii (Gosselé et al. 1983) Yamada et al. 2013

	Synonym	"Komagatabacter* hansenii"*
	Synonym	Novacetimonas hansenii
	Synonym	Acetobacter hansenii
	Synonym	Gluconoacetobacter hansenii
	Synonym	Gluconacetobacter hansenii

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %95.771

Information on culture and growth conditions Culture and growth conditions

[Ref.: #40606]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #40606]

Culture medium growth

[Ref.: #40606]

Culture medium composition

expand / minimize

[Ref.: #2249]

Culture medium

GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)

[Ref.: #2249]

Culture medium growth

[Ref.: #2249]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2249]

Culture medium composition

expand / minimize

[Ref.: #2249]

Culture medium

YPM MEDIUM (DSMZ Medium 360)

[Ref.: #2249]

Culture medium growth

[Ref.: #2249]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2249]

Culture medium composition

expand / minimize

[Ref.: #119836]

Culture medium

CIP Medium 1

[Ref.: #119836]

Culture medium growth

[Ref.: #119836]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2249]	growth	28 °C
[Ref.: #40606]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2249]	Sample type/isolated from	vinegar
[Ref.: #2249]	Geographic location (country and/or sea, region)	Jerusalem
[Ref.: #2249]	Country	Israel
[Ref.: #2249]	Country ISO 3 Code	ISR
[Ref.: #2249]	Continent	Asia

[Ref.: #46758]	Sample type/isolated from	Mutant derived from vinegar isolate NCIB 8745
[Ref.: #46758]	Geographic location (country and/or sea, region)	Jerusalem
[Ref.: #46758]	Country	Israel
[Ref.: #46758]	Country ISO 3 Code	ISR
[Ref.: #46758]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Local vinegar brewery
[Ref.: #67770]	Country	Israel
[Ref.: #67770]	Country ISO 3 Code	ISR
[Ref.: #67770]	Continent	Asia

[Ref.: #119836]	Sample type/isolated from	Food, Local vinegar brew
[Ref.: #119836]	Country	Israel
[Ref.: #119836]	Country ISO 3 Code	ISR
[Ref.: #119836]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Engineered	#Food production	#Food
#Condition	#Acidic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X75620 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	106
Soil Samples	119
Animal Samples	397
Plant Samples	188
Total Samples	810

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2249]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119836]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2249]	Gluconacetobacter hansenii gene for 16S ribosomal RNA	X75620	1481	GenBank ENA	436 tax ID
[Ref.: #20218]	Gluconacetobacter hansenii gene for 16S rRNA, partial sequence, strain: NBRC 14820	AB166736	1427	GenBank ENA	436 tax ID	*
[Ref.: #20218]	Gluconacetobacter hansenii gene for 16S rRNA, partial sequence, strain: NBRC 14820	AB680675	1414	GenBank ENA	436 tax ID	*
[Ref.: #20218]	Gluconacetobacter hansenii strain LMG 1527 16S ribosomal RNA gene, partial sequence	JF793986	1352	GenBank ENA	436 tax ID	*
[Ref.: #20218]	Gluconacetobacter hansenii strain DSM 5602 16S ribosomal RNA gene, partial sequence	JF793987	1352	GenBank ENA	436 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Novacetimonas hansenii NBRC 14820	GCA_006539705	contig	GenBank ENA	436 tax ID
[Ref.: #66792]	Novacetimonas hansenii JCM 7643	GCA_000964405	scaffold	GenBank ENA	1231352 tax ID	*
[Ref.: #66792]	Komagataeibacter hansenii JCM 7643	1231352.3	wgs	PATRIC	1231352 tax ID	*
[Ref.: #66792]	Komagataeibacter hansenii strain NBRC 14820	436.18	wgs	PATRIC	436 tax ID	*

[Ref.: #67770]

GC-content

59.7 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Komagataeibacter hansenii JCM 7643 JCM 7643 NCBI: GCA_000964405.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Komagataeibacter hansenii JCM 7643 JCM 7643 NCBI: GCA_000964405.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.771	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.963	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.405	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.555	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.26	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	60.002	no

Availability in culture collections External links

[Ref.: #2249]

Culture collection no.

DSM 5602, ATCC 35959, BCC 6318, CCUG 18123, LMG 1527, NBRC 14820, NCIMB 8746, JCM 7643, BCRC 14157, CGMCC 1.1811, CIP 103110, IFO 14820, VTT E-97829

[Ref.: #69768]

SI-ID 14555

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitrogen-fixing and cellulose-producing Gluconacetobacter kombuchae sp. nov., isolated from Kombucha tea.	Dutta D, Gachhui R	Int J Syst Evol Microbiol	10.1099/ijs.0.64638-0	2007	*
Metabolism	Cellulose synthesis by Komagataeibacter rhaeticus strain P 1463 isolated from Kombucha.	Semjonovs P, Ruklisha M, Paegle L, Saka M, Treimane R, Skute M, Rozenberga L, Vikele L, Sabovics M, Cleenwerck I	Appl Microbiol Biotechnol	10.1007/s00253-016-7761-8	2016	*
	Taxonomic heterogeneity of strains comprising Gluconacetobacter hansenii.	Navarro RR, Uchimura T, Komagata K	J Gen Appl Microbiol	10.2323/jgam.45.295	1999	*

References

#2249

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5602

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40606 ; Curators of the CIP;
#46758 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 18123

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69768

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14555.1 )

#119836 Collection of Institut Pasteur ; Curators of the CIP; CIP 103110
* These data were automatically processed and therefore are not curated

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