Mycobacterium holsaticum (DSM 44478, CCUG 46266, CIP 107726)

Name: Mycobacterium holsaticum (DSM 44478, CCUG 46266, CIP 107726)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8488

Type strain

Strain Designation 1406

Culture col. no. DSM 44478 CCUG 46266 CIP 107726 ATCC BAA-771 JCM 12374 2 more

NCBI tax ID(s) 1226752 152142

Special Collections DSMZ CCUG JCM CIP Wink compendium

History DSMZ <- E. Richter, Research Center, Borstel; 1406 JCM <-- CCUG 46266 <-- E. Richter 1406. CIP <- 2002, CCUG <- E. Richter, Borstel, Germany: strain 1406

Links

Mycobacterium holsaticum 1406 is an aerobe, rod-shaped bacterium that was isolated from human sputum.

rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 100512

CT2025-00085,DSM 44478,CCUG 46266,ATCC BAA-771,JCM 12374,CIP 107786

@ref 20215

Last LPSN update 2026-05-29 08:26:52

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium holsaticum

Full scientific name Mycobacterium holsaticum Richter et al. 2002

Synonyms (1)

Mycolicibacterium holsaticum

BacDive ID	Other strains from **Mycobacterium holsaticum** (4)	Type strain
8489	M. holsaticum 5050, ATCC BAA-772, DSM 44479, CCUG 46267
154802	M. holsaticum CCUG 55246
154911	M. holsaticum CCUG 55649
155127	M. holsaticum CCUG 56543

Morphology

Cell morphology

@ref	Cell shape	Confidence	Gram stain
119933	rod-shaped
125438		92
125438		91.664	positive
125439		92.638	positive

Colony morphology

@ref	Colony color	Incubation period	Medium used
20061	Rapeseed yellow (1021)	10-14 days	5006
20061	Rapeseed yellow (1021)	10-14 days	MB7H10
20061	Rapeseed yellow (1021)	10-14 days	MB7H11
57133		>3 days

Multimedia

@ref:	11804
multimedia content:	DSM_44478.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44478.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11804	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
20061	MB7H10		Name: Middlebrook 7H10 (MB7H10) Broth Base Composition: amount in percent Middlebrook 7H10 Agar 1.9% Glycerol 0.5% OADC-Enrichment in ml (NL5633) 10ml Comments: Add broth base and glycerol to ddh2O. Adjust volumes. Autoclave. Cool to 42°C. Add OADC-stock. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria OADC stock solution old broth-name: OADC-Stock Composition: Bovine Serum Albumin, fraction V 5 % 1% Oleic Acid in 0.2N NaOH 5ml Glucose 2 % NaCl 0.85 % Comments: Melt 1% Oleic Acid in 65°C water bath. Dissolve all ingredients in 700ml of ddH2O. Adjust volume to 1L. Filter sterilize and store at 4°C. -To make 1% Oleic Acid in 0.2N NaOH: Dissolve 5g oleic acid (ampule) in 500ml 0.2N NaOH (300ml ddH2O + 20ml NaOH + adjust volume to 500ml). Heat solution to 55°C for oleic acid to melt. Store at -20°C in 50ml aliquots. There is no need to sterilize this. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria
20061	MB7H11		Name: Middlebrook 7H11 (MB7H11) Broth Base Composition: Middlebrook 7H11 Agar 2% Glycerol 0.5% OADC-Enrichment 10ml Comments: Add broth base and glycerol to ddH2O. Adjust volumes. Autoclave. Cool to 42°C. Add OADC-Stock. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria OADC stock solution old broth-name: OADC-Stock Composition: Bovine Serum Albumin, fraction V 5 % 1% Oleic Acid in 0.2N NaOH 5ml Glucose 2 % NaCl 0.85 % Comments: Melt 1% Oleic Acid in 65°C water bath. Dissolve all ingredients in 700ml of ddH2O. Adjust volume to 1L. Filter sterilize and store at 4°C. -To make 1% Oleic Acid in 0.2N NaOH: Dissolve 5g oleic acid (ampule) in 500ml 0.2N NaOH (300ml ddH2O + 20ml NaOH + adjust volume to 500ml). Heat solution to 55°C for oleic acid to melt. Store at -20°C in 50ml aliquots. There is no need to sterilize this. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria
20061	5006		Medium: 5006 Name: Composition (g/l) Sucrose 3,0 Dextrin 15,0 Meat extract 1,0 Yeast extract 2,0 Tryptone soy broth (Oxoid) 5,0 NaCl 0,5 K2HPO4 0,5 MgSO4 x 7 H2O 0,5 FeSO4 x 7 H2O 0,01 Agar 20,0 Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7,3 Usage: Maintenance Organisms: All Actinomycetes
36333	MEDIUM 55 - for Mycobacterium
119933	CIP Medium 55	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11804	positive	growth	37
20061	positive	optimum	37
36333	positive	growth	30
57133	positive	growth	31
67770	positive	growth	37
119933	positive	growth	22-37
119933	negative	growth	10
119933	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
57133	aerobe
119933	obligate aerobe
125439	obligate aerobe	98.824

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	+	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	+	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	+	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	+	fermentation	from API Coryne
119933	606565 ChEBI	hippurate	+	hydrolysis
68379	17716 ChEBI	lactose	+	fermentation	from API Coryne
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
119933	17632 ChEBI	nitrate	+	reduction
119933	17632 ChEBI	nitrate	-	respiration
119933	16301 ChEBI	nitrite	-	reduction
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119933	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119933	amylase	-
119933	beta-galactosidase	+	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
119933	caseinase	-	3.4.21.50
119933	catalase	+	1.11.1.6
119933	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119933	gamma-glutamyltransferase	-	2.3.2.2
119933	gelatinase	-
68379	gelatinase	-		from API Coryne
119933	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
119933	lipase	-
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119933	oxidase	-
119933	protease	+
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
119933	tween esterase	-
119933	urease	+	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	biotin biosynthesis	100	4 of 4
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	ethanol fermentation	100	2 of 2
66794	octane oxidation	100	3 of 3
66794	enterobactin biosynthesis	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	photosynthesis	100	14 of 14
66794	palmitate biosynthesis	100	22 of 22
66794	adipate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	propanol degradation	100	7 of 7
66794	valine metabolism	100	9 of 9
66794	starch degradation	100	10 of 10
66794	glycogen metabolism	100	5 of 5
66794	taurine degradation	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	ceramide biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	cyanate degradation	100	3 of 3
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	vitamin K metabolism	100	5 of 5
66794	citric acid cycle	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	Entner Doudoroff pathway	90	9 of 10
66794	serine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	heme metabolism	85.71	12 of 14
66794	vitamin B1 metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	metabolism of disaccharids	81.82	9 of 11
66794	pentose phosphate pathway	81.82	9 of 11
66794	threonine metabolism	80	8 of 10
66794	factor 420 biosynthesis	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	pyrimidine metabolism	80	36 of 45
66794	hydrogen production	80	4 of 5
66794	purine metabolism	79.79	75 of 94
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	lipid metabolism	77.42	24 of 31
66794	leucine metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	butanoate fermentation	75	3 of 4
66794	toluene degradation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	gluconeogenesis	75	6 of 8
66794	non-pathway related	73.68	28 of 38
66794	3-phenylpropionate degradation	73.33	11 of 15
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	glutathione metabolism	71.43	10 of 14
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	vitamin B12 metabolism	70.59	24 of 34
66794	glycolysis	70.59	12 of 17
66794	urea cycle	69.23	9 of 13
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	sulfate reduction	69.23	9 of 13
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	polyamine pathway	65.22	15 of 23
66794	phenol degradation	65	13 of 20
66794	bile acid biosynthesis, neutral pathway	64.71	11 of 17
66794	carotenoid biosynthesis	63.64	14 of 22
66794	cholesterol biosynthesis	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	ketogluconate metabolism	62.5	5 of 8
66794	lysine metabolism	61.9	26 of 42
66794	oxidative phosphorylation	61.54	56 of 91
66794	tryptophan metabolism	60.53	23 of 38
66794	3-chlorocatechol degradation	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	d-mannose degradation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	proline metabolism	54.55	6 of 11
66794	histidine metabolism	51.72	15 of 29
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	resorcinol degradation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	arginine metabolism	50	12 of 24
66794	ascorbate metabolism	50	11 of 22
66794	methionine metabolism	50	13 of 26
66794	degradation of pentoses	50	14 of 28
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	degradation of hexoses	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	degradation of sugar acids	44	11 of 25
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	glycine metabolism	40	4 of 10
66794	creatinine degradation	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	D-cycloserine biosynthesis	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	carnitine metabolism	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	chlorophyll metabolism	33.33	6 of 18
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	arachidonic acid metabolism	27.78	5 of 18
66794	d-xylose degradation	27.27	3 of 11
66794	CMP-KDO biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	vitamin E metabolism	25	1 of 4
66794	daunorubicin biosynthesis	22.22	2 of 9

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
20061	+	+	-	+	-	-	+	-	-	+	-	not determinedn.d.	+	+	+	+	+	+	+	+	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20061	not determinedn.d.	-	+	+	+	+	+	+	+	+	+	+	-	-	-	+	-	-	-	-
119933	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
11804	human sputum	Homo sapiens			Germany	DEU	Europe
57133	Human sputum	Homo sapiens	1998	Borstel	Germany	DEU	Europe
67770	Sputum				Germany	DEU	Europe
119933	Human, Sputum	Homo sapiens			Germany	DEU	Europe	1998

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
11804	yes, in single cases	1	Risk group (German classification) According to TRBA 466
20061		1	German classification According to TRBA 466
119933		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1964583v1 assembly for Mycolicibacterium holsaticum DSM 44478 = JCM 12374	complete	GCA_019645835	152142.10	8115055809	1226752	99.35
66792	ASM2255856v1 assembly for Mycolicibacterium holsaticum DSM 44478 = JCM 12374	complete	GCA_022558565	1226752.3		1226752	98.47
124043	ASM4264950v1 assembly for Mycolicibacterium holsaticum CCUG 46266	scaffold	GCA_042649505			152142	74.79
66792	ASM2788624v1 assembly for Mycolicibacterium holsaticum DSM 44478 = JCM 12374	contig	GCA_027886245	1226752.4	8116390300	1226752	70.63

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Mycobacterium holsaticum 16S ribosomal RNA gene, partial sequence	AY438070	542		1226752
11804	Mycobacterium holsaticum 16S rRNA gene, strain 1406	AJ310467	1526		152142

GC content

@ref	GC-content (mol%)	Method
11804	68.4
67770	68.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1964583v1 assembly for Mycolicibacterium holsaticum DSM 44478 = JCM 12374
NCBI: GCA_019645835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.82	no
125439	gram_stain	BacteriaNetⓘ	positive	92.64	no
125439	motility	BacteriaNetⓘ	no	88.00	no
125439	spore_formation	BacteriaNetⓘ	no	80.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium holsaticum DSM 44478 DSM 44478
NCBI: GCA_022558565.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.66	no
125438	anaerobic	anaerobicⓘ	no	97.49	no
125438	aerobic	aerobicⓘ	yes	85.51	yes
125438	spore-forming	spore-formingⓘ	no	63.37	no
125438	thermophilic	thermophileⓘ	no	97.42	no
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
	Complete Genome Sequences of 14 Nontuberculous Mycobacteria Type Strains.	Igarashi Y, Osugi A, Murase Y, Chikamatsu K, Shimomura Y, Hosoya M, Aono A, Morishige Y, Yamada H, Takaki A, Mitarai S.	Microbiol Resour Announc	10.1128/mra.01214-22	2023
Phylogeny	Mycobacterium holsaticum sp. nov.	Richter E, Niemann S, Gloeckner FO, Pfyffer GE, Rusch-Gerdes S	Int J Syst Evol Microbiol	10.1099/00207713-52-6-1991	2002

References

#11804	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44478
#20061	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36333	; Curators of the CIP;
#57133	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46266
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#119933	Collection of Institut Pasteur ; Curators of the CIP; CIP 107786
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Mycobacterium holsaticum (DSM 44478, CCUG 46266, CIP 107726)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

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16S sequences

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