Mycobacterium mageritense (DSM 44476, ATCC 700351, CIP 104973)

Name: Mycobacterium mageritense (DSM 44476, ATCC 700351, CIP 104973)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8486

Type strain

Strain Designation 938

Culture col. no. DSM 44476 ATCC 700351 CIP 104973 CCUG 37984 JCM 12375 1 more

NCBI tax ID(s) 1209984 53462

Special Collections DSMZ CCUG JCM CIP Wink compendium

Links

Mycobacterium mageritense 938 is a facultative anaerobe, mesophilic, rod-shaped human pathogen that was isolated from sputum from asymptomatic human.

rod-shaped facultative anaerobe mesophilic human pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 43888

ATCC 700351,CIP 104973,CCUG 37984,DSM 44476,JCM 12375

@ref 20215

Last LPSN update 2025-12-16 09:48:51

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium mageritense

Full scientific name Mycobacterium mageritense Domenech et al. 1997

Synonyms (1)

Mycolicibacterium mageritense

BacDive ID	Other strains from **Mycobacterium mageritense** (5)	Type strain
8487	M. mageritense 1336, DSM 44477
145400	M. mageritense CCUG 28366
152128	M. mageritense CCUG 45857
152149	M. mageritense CCUG 45912
153822	M. mageritense CCUG 51275

Morphology

Cell morphology

@ref	Cell shape	Motility	Gram stain	Confidence
120748	rod-shaped
125439			positive	94.8

Colony morphology

@ref	Colony color	Incubation period	Medium used
19865	Ivory	10-14 days	5006
19865	Ivory	10-14 days	MB7H10
19865	Ivory	10-14 days	MB7H11

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11802	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
11802	LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)	Medium recipe at MediaDive	Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water
19865	MB7H10		Name: Middlebrook 7H10 (MB7H10) Broth Base Composition: amount in percent Middlebrook 7H10 Agar 1.9% Glycerol 0.5% OADC-Enrichment in ml (NL5633) 10ml Comments: Add broth base and glycerol to ddh2O. Adjust volumes. Autoclave. Cool to 42°C. Add OADC-stock. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria OADC stock solution old broth-name: OADC-Stock Composition: Bovine Serum Albumin, fraction V 5 % 1% Oleic Acid in 0.2N NaOH 5ml Glucose 2 % NaCl 0.85 % Comments: Melt 1% Oleic Acid in 65°C water bath. Dissolve all ingredients in 700ml of ddH2O. Adjust volume to 1L. Filter sterilize and store at 4°C. -To make 1% Oleic Acid in 0.2N NaOH: Dissolve 5g oleic acid (ampule) in 500ml 0.2N NaOH (300ml ddH2O + 20ml NaOH + adjust volume to 500ml). Heat solution to 55°C for oleic acid to melt. Store at -20°C in 50ml aliquots. There is no need to sterilize this. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria
19865	MB7H11		Name: Middlebrook 7H11 (MB7H11) Broth Base Composition: Middlebrook 7H11 Agar 2% Glycerol 0.5% OADC-Enrichment 10ml Comments: Add broth base and glycerol to ddH2O. Adjust volumes. Autoclave. Cool to 42°C. Add OADC-Stock. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria OADC stock solution old broth-name: OADC-Stock Composition: Bovine Serum Albumin, fraction V 5 % 1% Oleic Acid in 0.2N NaOH 5ml Glucose 2 % NaCl 0.85 % Comments: Melt 1% Oleic Acid in 65°C water bath. Dissolve all ingredients in 700ml of ddH2O. Adjust volume to 1L. Filter sterilize and store at 4°C. -To make 1% Oleic Acid in 0.2N NaOH: Dissolve 5g oleic acid (ampule) in 500ml 0.2N NaOH (300ml ddH2O + 20ml NaOH + adjust volume to 500ml). Heat solution to 55°C for oleic acid to melt. Store at -20°C in 50ml aliquots. There is no need to sterilize this. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria
19865	5006		Medium: 5006 Name: Composition (g/l) Sucrose 3,0 Dextrin 15,0 Meat extract 1,0 Yeast extract 2,0 Tryptone soy broth (Oxoid) 5,0 NaCl 0,5 K2HPO4 0,5 MgSO4 x 7 H2O 0,5 FeSO4 x 7 H2O 0,01 Agar 20,0 Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7,3 Usage: Maintenance Organisms: All Actinomycetes
36361	MEDIUM 55 - for Mycobacterium
120748	CIP Medium 55	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
11802	positive	growth	37	mesophilic
19865	positive	optimum	37	mesophilic
36361	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
120748	positive	growth	22-37
120748	negative	growth	10
120748	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
120748	facultative anaerobe
125439	obligate aerobe	99

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
120748	606565 ChEBI	hippurate	-	hydrolysis
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
120748	17632 ChEBI	nitrate	+	reduction
120748	17632 ChEBI	nitrate	-	respiration
120748	16301 ChEBI	nitrite	-	reduction
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120748	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
120748	beta-galactosidase	-	3.2.1.23
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
120748	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120748	gamma-glutamyltransferase	+	2.3.2.2
120748	gelatinase	-
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
120748	oxidase	-
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
120748	urease	+	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ethanol fermentation	100	2 of 2
66794	octane oxidation	100	3 of 3
66794	aspartate and asparagine metabolism	100	9 of 9
66794	enterobactin biosynthesis	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	photosynthesis	100	14 of 14
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	3-chlorocatechol degradation	100	5 of 5
66794	starch degradation	100	10 of 10
66794	biotin biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	threonine metabolism	100	10 of 10
66794	cardiolipin biosynthesis	100	7 of 7
66794	Entner Doudoroff pathway	100	10 of 10
66794	aerobactin biosynthesis	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	ribulose monophosphate pathway	100	2 of 2
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	pentose phosphate pathway	100	11 of 11
66794	allantoin degradation	100	9 of 9
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	propanol degradation	100	7 of 7
66794	cyanate degradation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	propionate fermentation	100	10 of 10
66794	phenol degradation	95	19 of 20
66794	citric acid cycle	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	valine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	ketogluconate metabolism	87.5	7 of 8
66794	purine metabolism	87.23	82 of 94
66794	flavin biosynthesis	86.67	13 of 15
66794	glutathione metabolism	85.71	12 of 14
66794	heme metabolism	85.71	12 of 14
66794	vitamin B12 metabolism	85.29	29 of 34
66794	leucine metabolism	84.62	11 of 13
66794	urea cycle	84.62	11 of 13
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	metabolism of disaccharids	81.82	9 of 11
66794	3-phenylpropionate degradation	80	12 of 15
66794	peptidoglycan biosynthesis	80	12 of 15
66794	hydrogen production	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	myo-inositol biosynthesis	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	histidine metabolism	79.31	23 of 29
66794	arginine metabolism	79.17	19 of 24
66794	tryptophan metabolism	78.95	30 of 38
66794	tyrosine metabolism	78.57	11 of 14
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	alanine metabolism	75.86	22 of 29
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	toluene degradation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	pyrimidine metabolism	73.33	33 of 45
66794	methionine metabolism	73.08	19 of 26
66794	proline metabolism	72.73	8 of 11
66794	vitamin B6 metabolism	72.73	8 of 11
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	degradation of pentoses	71.43	20 of 28
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	lipid metabolism	70.97	22 of 31
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	oxidative phosphorylation	69.23	63 of 91
66794	sulfate reduction	69.23	9 of 13
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	degradation of sugar acids	68	17 of 25
66794	d-mannose degradation	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	degradation of hexoses	66.67	12 of 18
66794	bile acid biosynthesis, neutral pathway	64.71	11 of 17
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	lysine metabolism	64.29	27 of 42
66794	degradation of sugar alcohols	62.5	10 of 16
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	cysteine metabolism	61.11	11 of 18
66794	lipoate biosynthesis	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	D-cycloserine biosynthesis	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	cholesterol biosynthesis	54.55	6 of 11
66794	ascorbate metabolism	54.55	12 of 22
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	glycine metabolism	50	5 of 10
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	carnitine metabolism	50	4 of 8
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	catecholamine biosynthesis	50	2 of 4
66794	coenzyme M biosynthesis	50	5 of 10
66794	resorcinol degradation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	nitrate assimilation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	glycine betaine biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	d-xylose degradation	36.36	4 of 11
66794	chlorophyll metabolism	33.33	6 of 18
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	sulfoquinovose degradation	33.33	1 of 3
66794	carotenoid biosynthesis	31.82	7 of 22
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	methanogenesis from CO2	25	3 of 12
66794	vitamin E metabolism	25	1 of 4
66794	daunorubicin biosynthesis	22.22	2 of 9

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
19865	-	-	+	-	-	-	-	-	+	+	-	not determinedn.d.	-	-	-	-	+	-	+	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19865	not determinedn.d.	-	+	+	-	+	-	+	+	+	-	-	-	-	-	-	+	-	-	-
120748	-	+	+	+	+	+	+	+	+	-	+	+	-	-	-	+	+	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120748	not determinedn.d.	+	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	-	-	+	+	+	-	-	+	+	-	-	+	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	+	-	-	+	+	+	+	+	+	-	+	+	+	+	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
11802	sputum from asymptomatic human		Madrid, Cantoblanco Hospital	Spain	ESP	Europe
53998	Human sputum	1987	Madrid	Spain	ESP	Europe
67770	Sputum of asymptomatic human			Spain	ESP	Europe
120748	Human, Sputum		Madrid	Spain	ESP	Europe	1987

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11802	2	Risk group (German classification) According to TRBA 466
19865	1	Risk group (German classification) According to TRBA 466
120748	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1072747v1 assembly for Mycolicibacterium mageritense JCM 12375	complete	GCA_010727475	53462.6	8110398664	53462	96.78
67770	PRJEB5749_assembly_1 assembly for Mycolicibacterium mageritense DSM 44476 = CIP 104973	contig	GCA_000612825	1209984.3	2617271075	1209984	77.46
124043	Mmager.1 assembly for Mycolicibacterium mageritense DSM 44476 = CIP 104973	contig	GCA_048569395			1209984	51.77

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	M.mageritense 16S rRNA gene	X99838	634	1209984
20218	Mycobacterium mageritense strain CIP 104973 16S ribosomal RNA gene, partial sequence	AF547944	540	1209984
20218	Mycolicibacterium mageritense strain CIP 104973 16S ribosomal RNA gene, partial sequence	AY457076	1485	53462
20218	Mycobacterium mageritense 16S rRNA gene, type strain DSM 44476	AJ699399	1497	1209984

GC content

@ref	GC-content (mol%)	Method
67770	66.9	genome sequence analysis
67770	66	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycolicibacterium mageritense strain JCM 12375
PATRIC: 53462.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.00	no
125439	gram_stain	BacteriaNetⓘ	positive	94.80	no
125439	motility	BacteriaNetⓘ	no	76.60	no
125439	spore_formation	BacteriaNetⓘ	no	57.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycolicibacterium mageritense JCM 12375
NCBI: GCA_010727475.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.15	no
125438	anaerobic	anaerobicⓘ	no	96.35	yes
125438	aerobic	aerobicⓘ	yes	85.38	no
125438	spore-forming	spore-formingⓘ	no	55.11	no
125438	thermophilic	thermophileⓘ	no	96.79	yes
125438	flagellated	motile2+ⓘ	no	85.96	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Complete Genome Sequence of Mycobacterium sp. Strain 3519A.	Bouam A, Levasseur A, Bonnet M, Borand L, Van Goethem C, Drancourt M, Godreuil S.	Genome Announc	10.1128/genomea.01565-17	2018
	The rare lncRNA GOLLD is widespread and structurally conserved among Mycobacterium tRNA arrays.	Morgado S, Antunes D, Caffarena E, Vicente AC.	RNA Biol	10.1080/15476286.2020.1748922	2020
	Rhodococcus erythropolis BG43 Genes Mediating Pseudomonas aeruginosa Quinolone Signal Degradation and Virulence Factor Attenuation.	Muller C, Birmes FS, Ruckert C, Kalinowski J, Fetzner S.	Appl Environ Microbiol	10.1128/aem.02145-15	2015
Pathogenicity	Effect of ciprofloxacin in the ultrastructure and development of biofilms formed by rapidly growing mycobacteria.	Munoz-Egea MC, Garcia-Pedrazuela M, Mahillo I, Esteban J.	BMC Microbiol	10.1186/s12866-015-0359-y	2015
Metabolism	Screening of Deoxynivalenol Producing Strains and Elucidation of Possible Toxigenic Molecular Mechanism.	Zheng X, Zhang X, Zhao L, Apaliya MT, Yang Q, Sun W, Zhang X, Zhang H.	Toxins (Basel)	10.3390/toxins9060184	2017
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
	Autofluorescence as a tool for structural analysis of biofilms formed by nonpigmented rapidly growing mycobacteria.	Munoz-Egea MC, Garcia-Pedrazuela M, Mahillo I, Garcia MJ, Esteban J.	Appl Environ Microbiol	10.1128/aem.03149-12	2013
Pathogenicity	In vitro activities of tigecycline and 10 other antimicrobials against nonpigmented rapidly growing mycobacteria.	Fernandez-Roblas R, Martin-de-Hijas NZ, Fernandez-Martinez AI, Garcia-Almeida D, Gadea I, Esteban J.	Antimicrob Agents Chemother	10.1128/aac.00695-08	2008
Phylogeny	Rapid identification of mycobacterial whole cells in solid and liquid culture media by matrix-assisted laser desorption ionization-time of flight mass spectrometry.	Lotz A, Ferroni A, Beretti JL, Dauphin B, Carbonnelle E, Guet-Revillet H, Veziris N, Heym B, Jarlier V, Gaillard JL, Pierre-Audigier C, Frapy E, Berche P, Nassif X, Bille E.	J Clin Microbiol	10.1128/jcm.01397-10	2010
Phylogeny	Genome-guided and mass spectrometry investigation of natural products produced by a potential new actinobacterial strain isolated from a mangrove ecosystem in Futian, Shenzhen, China.	Hu D, Gao C, Sun C, Jin T, Fan G, Mok KM, Lee SM	Sci Rep	10.1038/s41598-018-37475-w	2019
Genetics	Draft Genome Sequence of Mycobacterium mageritense DSM 44476T.	Croce O, Robert C, Raoult D, Drancourt M	Genome Announc	10.1128/genomeA.00354-14	2014
	Mycobacterium jinjuensis sp. nov., a Novel Acid-Fast Bacterium Isolated from a Pneumonia Patient.	Trinh MP, Shin JI, Kim KM, Dao TO, Choi JG, Jung M, Kang HL, Baik SC, Lee WK, Byun JH, Shin MK.	Curr Microbiol	10.1007/s00284-025-04473-x	2025
Genetics	Characterization of Mycobacterium salfingeri sp. nov.: A novel nontuberculous mycobacteria isolated from a human wound infection.	Musser E, Smith C, Halse TA, Kohlerschmidt D, Rourke A, Fiero A, Musser KA, Escuyer V, Lapierre P.	Front Microbiol	10.3389/fmicb.2022.992610	2022

References

#11802	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44476
#19865	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36361	; Curators of the CIP;
#53998	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37984
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#120748	Collection of Institut Pasteur ; Curators of the CIP; CIP 104973
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium mageritense (DSM 44476, ATCC 700351, CIP 104973)

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