Name: Mycobacterium murale 220-96
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8479

Type strain:

Species: Mycobacterium murale

Strain Designation: 220-96, MA 112/96

Culture col. no.: CCUG 39728, JCM 13392, DSM 44340, HAMBI 2320, CIP 105980, VTT E-062961

Strain history: CIP <- 1999, CCUG <- M. Salkinoja-Salonen, Helsinki, Finland <- M. A. Andersson

NCBI tax ID(s): 182220 (species)

SI-ID 50580

CIP 105980, CCUG 39728, DSM 44340, HAMBI 2320, JCM 13392, VTT E-062961

Section

Mycobacterium murale 220-96 is an aerobe, mesophilic bacterium that was isolated from water-damaged indoor building material.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium murale**
	Full Scientific Name (LPSN)	Mycobacterium murale Vuorio et al. 1999

Synonym

Mycolicibacterium murale

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #121186]	Cell shape	rod-shaped

[Ref.: #121186]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.855

[Ref.: #20046]	Colony color	Golden yellow (1004)
[Ref.: #20046]	Incubation period	10-14 days
[Ref.: #20046]	Cultivation medium used	5006

[Ref.: #20046]	Incubation period	10-14 days
[Ref.: #20046]	Cultivation medium used	MB7H10

[Ref.: #20046]	Incubation period	10-14 days
[Ref.: #20046]	Cultivation medium used	MB7H11

[Ref.: #54907]	Incubation period	2-4 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11686]

Culture medium

MYCOBACTERIUM MEDIUM (DSMZ Medium 219)

[Ref.: #11686]

Culture medium growth

[Ref.: #11686]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11686]

Culture medium composition

expand / minimize

[Ref.: #11686]

Culture medium

PEPTONE MEAT EXTRACT GLYCEROL AGAR (DSMZ Medium 250)

[Ref.: #11686]

Culture medium growth

[Ref.: #11686]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11686]

Culture medium composition

expand / minimize

[Ref.: #20046]

Culture medium

MB7H10

[Ref.: #20046]

Culture medium growth

[Ref.: #20046]

Culture medium composition

expand / minimize

[Ref.: #20046]

Culture medium

MB7H11

[Ref.: #20046]

Culture medium growth

[Ref.: #20046]

Culture medium composition

expand / minimize

[Ref.: #20046]

Culture medium

5006

[Ref.: #20046]

Culture medium growth

[Ref.: #20046]

Culture medium composition

expand / minimize

[Ref.: #36255]

Culture medium

MEDIUM 55 - for Mycobacterium

[Ref.: #36255]

Culture medium growth

[Ref.: #121186]

Culture medium

CIP Medium 55

[Ref.: #121186]

Culture medium growth

[Ref.: #121186]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #11686]		growth	37 °C
[Ref.: #20046]		optimum	37 °C
[Ref.: #36255]		growth	22 °C
[Ref.: #54907]		growth	30 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #121186]		growth	10-30 °C
[Ref.: #121186]	no	growth	45 °C

[Ref.: #11686]	Temperature range	mesophilic
[Ref.: #20046]	Temperature range	mesophilic
[Ref.: #36255]	Temperature range	psychrophilic
[Ref.: #54907]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #121186]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #54907]	Oxygen tolerance	aerobe
[Ref.: #121186]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %93
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.751

[Ref.: #67770]

Observation

quinones: MK-9(H₂) (90%), MK-8(H₂) (10%)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #121186]	hippurate ChEBI	-	hydrolysis
[Ref.: #68379]	lactose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #121186]	nitrate ChEBI	-	reduction
[Ref.: #121186]	nitrate ChEBI	-	respiration
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #121186]	nitrite ChEBI	-	reduction
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121186]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121186]	amylase	-
[Ref.: #121186]	beta-galactosidase	+	3.2.1.23
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	+	3.2.1.31	* from API Coryne
[Ref.: #121186]	caseinase	-	3.4.21.50
[Ref.: #121186]	catalase	+	1.11.1.6
[Ref.: #121186]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121186]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #121186]	gelatinase	-
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #121186]	lecithinase	-
[Ref.: #121186]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #121186]	oxidase	-
[Ref.: #121186]	protease	-
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #121186]	tween esterase	+
[Ref.: #121186]	urease	+	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #54907]

Fatty acid	Percentage	ECL
C18:1 ω9c	28.2	17.769
C16:0	19.3	16
C17:1 ω7c	16.1	16.818
C20:0 alcohol (C20:0 2OH alc)	11.4	18.835
C16:1 ω7c/C15:0 ISO 2OH	10.8	15.85
C14:0	4.3	14
TBSA 10Me18:0	4.3	18.392
C16:1 ω7c	2.6	15.819
C16:1 ω9c	1.3	15.774
C18:2 ω6,9c/C18:0 ANTE	0.7	17.724
C18:0	0.6	18
C17:1 ω8c	0.4	16.792

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121186]	1449	not determinedn.d.	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	+	+	+	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	+	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #20046]	401	+	-	-	-	+	+	-	-	-	+	+	not determinedn.d.	+	-	-	+	+	+	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20046]	829	not determinedn.d.	-	+	+	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-
[Ref.: #121186]	9140	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11686]	Sample type/isolated from	water-damaged indoor building material
[Ref.: #11686]	Country	Finland
[Ref.: #11686]	Country ISO 3 Code	FIN
[Ref.: #11686]	Continent	Europe

[Ref.: #54907]	Sample type/isolated from	Water-damaged indoor building material
[Ref.: #54907]	Country	Finland
[Ref.: #54907]	Country ISO 3 Code	FIN
[Ref.: #54907]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Water-damaged indoor building material of a children's day care center
[Ref.: #67770]	Country	Finland
[Ref.: #67770]	Country ISO 3 Code	FIN
[Ref.: #67770]	Continent	Europe

[Ref.: #121186]	Sample type/isolated from	Environment, Water-damaged indoor building material
[Ref.: #121186]	Geographic location (country and/or sea, region)	Helsinki
[Ref.: #121186]	Country	Finland
[Ref.: #121186]	Country ISO 3 Code	FIN
[Ref.: #121186]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Built environment

#Indoor

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11686]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20046]	Biosafety level	1	German classification
[Ref.: #121186]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Mycobacterium murale 16S ribosomal RNA gene, partial sequence	HM770863	1472	ENA	182220 tax ID	*
[Ref.: #20218]	Mycobacterium murale strain CIP 105980 16S ribosomal RNA gene, partial sequence	AF547950	540	ENA	182220 tax ID	*
[Ref.: #20218]	Mycobacterium murale gene for 16S ribosomal RNA, partial sequence	AB537171	1459	ENA	182220 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycolicibacterium murale JCM 13392	GCA_010722995	contig	GenBank	182220 tax ID	*
[Ref.: #66792]	Mycolicibacterium murale strain JCM 13392	182220.8	wgs	PATRIC	182220 tax ID	*
[Ref.: #66792]	Mycolicibacterium murale DSM 44340	GCA_025822305	scaffold	GenBank	182220 tax ID	*

[Ref.: #11686]	GC-content	72.9 mol%
[Ref.: #67770]	GC-content	72.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycolicibacterium murale strain JCM 13392 PATRIC: 182220.8
[Ref.: #69481]	spore-forming	no	93	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycolicibacterium murale strain JCM 13392 PATRIC: 182220.8
[Ref.: #69480]	motile	no	89.676	no
[Ref.: #69480]	gram-positive	yes	87.786	no
[Ref.: #69480]	anaerobic	no	99.487	yes
[Ref.: #69480]	aerobic	yes	90.519	yes
[Ref.: #69480]	halophile	no	86.568	no
[Ref.: #69480]	spore-forming	no	84.81	no
[Ref.: #69480]	glucose-util	yes	88.632	no
[Ref.: #69480]	flagellated	no	97.504	no
[Ref.: #69480]	thermophile	no	99.581	no
[Ref.: #69480]	glucose-ferment	no	90.401	no

Availability in culture collections External links

[Ref.: #11686]

Culture collection no.

CCUG 39728, JCM 13392, DSM 44340, HAMBI 2320, CIP 105980, VTT E-062961

[Ref.: #77874]

SI-ID 50580

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycolicibacterium baixiangningiae sp. nov. and Mycolicibacterium mengxianglii sp. nov., two new rapidly growing mycobacterial species.	Cheng Y, Lei W, Wang X, Tian Z, Liu H, Yang J, Lu S, Lai XH, Pu J, Huang Y, Zhang S, Yang C, Lian X, Bai Y, Wan K, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005019	2021	*
Phylogeny	A new rapidly growing mycobacterial species, Mycobacterium murale sp. nov., isolated from the indoor walls of a children's day care centre.	Vuorio R, Andersson MA, Rainey FA, Kroppenstedt RM, Kampfer P, Busse HJ, Viljanen M, Salkinoja-Salonen M	Int J Syst Bacteriol	10.1099/00207713-49-1-25	1999	*

References

#11686

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44340

#20046

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36255 ; Curators of the CIP;
#54907 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 39728

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77874

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50580.1 )

#121186 Collection of Institut Pasteur ; Curators of the CIP; CIP 105980
* These data were automatically processed and therefore are not curated

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Search for species Mycobacterium murale in external resources:
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Mycolicibacterium murale strain JCM 13392

Mycolicibacterium murale strain JCM 13392

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