Mycobacterium conspicuum (DSM 44136, ATCC 700090, CIP 105165)

Name: Mycobacterium conspicuum (DSM 44136, ATCC 700090, CIP 105165)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8461

Type strain

Strain Designation 3895/92

Culture col. no. DSM 44136 ATCC 700090 CIP 105165 CCUG 37516 JCM 14738 1 more

NCBI tax ID(s) 44010

Special Collections DSMZ CCUG JCM CIP

History <- E. C. Böttger, 3895/92 (E27; E100) CIP 105165 <-- DSM 44136 <-- E. C. Böttger 3895/92. CIP <- 1997, DSMZ <- E.C. Böttger: strain 3895/92

Links

Mycobacterium conspicuum 3895/92 is a microaerophile, mesophilic, rod-shaped prokaryote that was isolated from patients with disseminated infection.

rod-shaped microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 43767

CT2017-00305,ATCC 700090,DSM 44136,CCUG 37516,CIP 105165,JCM 14738

@ref 20215

Last LPSN update 2025-12-16 09:48:50

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium conspicuum

Full scientific name Mycobacterium conspicuum Springer et al. 1996

BacDive ID	Other strains from **Mycobacterium conspicuum** (1)	Type strain
8462	M. conspicuum DSM 44146

Morphology

Cell morphology

@ref	Gram stain	Confidence	Cell shape
118733			rod-shaped
125439	positive	93.7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11516	LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)	Medium recipe at MediaDive	Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water
11516	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
36350	MEDIUM 55 - for Mycobacterium
118733	CIP Medium 55	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
11516	positive	growth	37	mesophilic
36350	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
118733	positive	growth	22-30
118733	negative	growth	10
118733	negative	growth	15
118733	negative	growth	37
118733	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
118733	microaerophile
125439	aerobe	97.2

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
118733	17632 ChEBI	nitrate	-	reduction
118733	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118733	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
118733	beta-galactosidase	+	3.2.1.23
118733	catalase	+	1.11.1.6
118733	gamma-glutamyltransferase	-	2.3.2.2
118733	gelatinase	-
118733	oxidase	-
118733	urease	-	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	starch degradation	100	10 of 10
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	methylglyoxal degradation	100	5 of 5
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	4-hydroxymandelate degradation	100	9 of 9
66794	octane oxidation	100	3 of 3
66794	enterobactin biosynthesis	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	butanoate fermentation	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	cyanate degradation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	taurine degradation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	ceramide biosynthesis	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	glycine betaine biosynthesis	100	5 of 5
66794	phenylalanine metabolism	92.31	12 of 13
66794	threonine metabolism	90	9 of 10
66794	propionate fermentation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	dTDPLrhamnose biosynthesis	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	propanol degradation	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	citric acid cycle	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	purine metabolism	82.98	78 of 94
66794	vitamin B12 metabolism	82.35	28 of 34
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	pentose phosphate pathway	81.82	9 of 11
66794	Entner Doudoroff pathway	80	8 of 10
66794	cellulose degradation	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glutathione metabolism	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	lipid metabolism	77.42	24 of 31
66794	urea cycle	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	pyrimidine metabolism	75.56	34 of 45
66794	glycogen biosynthesis	75	3 of 4
66794	vitamin E metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	toluene degradation	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	ketogluconate metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	tryptophan metabolism	73.68	28 of 38
66794	3-phenylpropionate degradation	73.33	11 of 15
66794	metabolism of disaccharids	72.73	8 of 11
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	glycolysis	70.59	12 of 17
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	vitamin B1 metabolism	69.23	9 of 13
66794	sulfate reduction	69.23	9 of 13
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	sphingosine metabolism	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	methionine metabolism	65.38	17 of 26
66794	phenol degradation	65	13 of 20
66794	bile acid biosynthesis, neutral pathway	64.71	11 of 17
66794	cholesterol biosynthesis	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	oxidative phosphorylation	61.54	56 of 91
66794	cysteine metabolism	61.11	11 of 18
66794	creatinine degradation	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	3-chlorocatechol degradation	60	3 of 5
66794	carotenoid biosynthesis	59.09	13 of 22
66794	histidine metabolism	58.62	17 of 29
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	benzoyl-CoA degradation	57.14	4 of 7
66794	lysine metabolism	54.76	23 of 42
66794	degradation of pentoses	53.57	15 of 28
66794	degradation of sugar acids	52	13 of 25
66794	quinate degradation	50	1 of 2
66794	ascorbate metabolism	50	11 of 22
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	resorcinol degradation	50	1 of 2
66794	arginine metabolism	50	12 of 24
66794	lactate fermentation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	tyrosine metabolism	50	7 of 14
66794	degradation of hexoses	50	9 of 18
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	nitrate assimilation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	arachidonic acid metabolism	44.44	8 of 18
66794	aclacinomycin biosynthesis	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	elloramycin biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	D-cycloserine biosynthesis	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	carnitine metabolism	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	IAA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	myo-inositol biosynthesis	30	3 of 10
66794	chlorophyll metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	CMP-KDO biosynthesis	25	1 of 4
66794	daunorubicin biosynthesis	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Disease
#Infection	#Patient

Isolation

@ref	Sample type
11516	patients with disseminated infection
53710	Human with disseminated infection
67770	Blood of a patient with disseminated infection
118733	Human, Disseminated infection

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11516	2	Risk group (German classification) According to TRBA 466
118733	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1073019v1 assembly for Mycobacterium conspicuum JCM 14738	complete	GCA_010730195	44010.9	8110627419	44010	98.68
67770	ASM210209v1 assembly for Mycobacterium conspicuum DSM 44136	contig	GCA_002102095	44010.3	2865357517	44010	60.39
66792	ASM2582176v1 assembly for Mycobacterium conspicuum DSM 44136	scaffold	GCA_025821765	44010.11	8114813476	44010	35.25

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	M.conspicuum 16S rRNA gene	X88922	1433		44010
20218	Mycobacterium conspicuum strain CIP 105165 16S ribosomal RNA gene, partial sequence	AF547914	554		44010

GC content

@ref	GC-content (mol%)	Method
67770	67.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycobacterium conspicuum strain JCM 14738
PATRIC: 44010.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	52.20	no
125439	motility	BacteriaNetⓘ	no	76.00	no
125439	gram_stain	BacteriaNetⓘ	positive	93.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium conspicuum JCM 14738
NCBI: GCA_010730195.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.39	no
125438	anaerobic	anaerobicⓘ	no	96.81	yes
125438	aerobic	aerobicⓘ	yes	81.09	no
125438	spore-forming	spore-formingⓘ	no	56.04	no
125438	thermophilic	thermophileⓘ	no	96.00	no
125438	flagellated	motile2+ⓘ	no	86.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium conspicuum sp. nov., a new species isolated from patients with disseminated infections.	Springer B, Tortoli E, Richter I, Grunewald R, Rusch-Gerdes S, Uschmann K, Suter F, Collins MD, Kroppenstedt RM, Bottger EC.	J Clin Microbiol	10.1128/jcm.33.11.2805-2811.1995	1995

References

#11516	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44136
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36350	; Curators of the CIP;
#53710	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37516
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#118733	Collection of Institut Pasteur ; Curators of the CIP; CIP 105165
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium conspicuum (DSM 44136, ATCC 700090, CIP 105165)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_010730195

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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