Strain identifier

BacDive ID: 8442

Type strain: Yes

Species: Mycobacterium shimoidei

Culture col. no.: CCUG 37517, JCM 12376, DSM 44152, ATCC 27962, E4796

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Mycobacterium shimoidei CCUG 37517 is a mesophilic bacterium that was isolated from sputum of patient with tuberculosis-like disease.

  1. mesophilic
  2. 16S sequence
  3. Bacteria
  4. genome sequence
  • Information on morphological and physiological propertiesMorphology and physiologyarrow_down
  • [Ref.: #53711] Incubation period 10 days
    Fatty acid profile
    Type of FA analysis whole cell analysis
    Incubation medium
    Incubation temperature (°C)
    Incubation time (d)
    Incubation pH
    Incubation oxygen condition
    Software version
    Library/peak naming table
    Method/protocol CCUG
    Cutoff value
    Reference [Ref.: #53711]
    Fatty acidarrow to sort Percentagearrow to sort ECLarrow to sort
    C14:0 1 14
    C15:0 0.3 15
    C16:0 30 16
    C17:0 0.3 17
    C18:0 3.8 18
    C16:0 2OH 0.3 17.233
    C16:1 ω7c 2.9 15.819
    C16:1 ω9c 1.6 15.774
    C18:1 ω7c /12t/9t 2.3 17.824
    C18:1 ω9c 39.7 17.769
    C18:2 ω6,9c/C18:0 ANTE 12.1 17.724
    C20:0 alcohol (C20:0 2OH alc) 2 18.835
    C20:4 ω6,9,12,15c 1.3 19.395
    TBSA 10Me18:0 2.2 18.392
    Unidentified 0.3 16.904

    [Ref.: #11552] Multimedia content
    [Ref.: #11552] Caption Medium 645 37°C
    [Ref.: #11552] License/Copyright (C) Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
    [Ref.: #11552] Intellectual property rights © Leibniz-Institut DSMZ
  • Information on genomic background e.g. entries in nucleic sequence databassMolecular biologyarrow_down
  • Sequence information: Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries.
    Sequence databasearrow to sort Sequence accession descriptionarrow to sort Sequence accession numberarrow to sort Sequence typearrow to sort Sequence length (bp)arrow to sort Associated NCBI tax IDarrow to sort
    [Ref.: #20218] Marker Gene (GenBank Direct submission) Mycobacterium shimoidei RNA polymerase beta (rpoB) gene, partial cds AF057486 306 29313 tax ID *
    [Ref.: #20218] Marker Gene (EMBL Direct submission) Mycobacterium shimoidei 16S rRNA gene and internal transcribed spacer AJ005005 16S 1805 29313 tax ID *
    [Ref.: #20218] Marker Gene (EMBL Direct submission) Mycobacterium shimoidei partial recA gene and Msh recA intein AJ251338 1269 29313 tax ID *
    [Ref.: #20218] Marker Gene (GenBank Direct submission) Mycobacterium shimoidei strain ATCC 27962 heat shock protein 65 (hsp65) gene, partial cds AY299139 603 29313 tax ID *
    [Ref.: #20218] Marker Gene (GenBank Direct submission) Mycobacterium shimoidei strain ATCC 27962 RecA (recA) gene, partial cds AY601701 912 29313 tax ID *

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