Name: Mycobacterium avium subsp. paratuberculosis 1351
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8440

Type strain:

Species: Mycobacterium avium subsp. paratuberculosis

Strain Designation: 1351

Culture col. no.: DSM 44135

Strain history: <- U. Jark, University of Veterinary Medicine Hannover, Germany; 1351 <- Dr. Bähr, Vet. Unters. Amt Oldenburg; 1351

NCBI tax ID(s): 1770 (subspecies)

SI-ID 50503

DSM 44135

Other strains from Mycobacterium avium subsp. paratuberculosis

Section

Mycobacterium avium subsp. paratuberculosis 1351 is a mesophilic human pathogen that was isolated from decontaminated faeces of a paratuberculosis infected cow.

human pathogen
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium avium subsp. paratuberculosis**
	Full Scientific Name (LPSN)	Mycobacterium avium subsp. paratuberculosis (Bergey et al. 1923) Thorel et al. 1990

Synonym

Mycobacterium paratuberculosis

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 780 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

MIDDLEBROOK MEDIUM WITH MYCOBACTIN (DSMZ Medium 780)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11515]			growth	37 °C

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Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11515]	Sample type/isolated from	decontaminated faeces of a paratuberculosis infected cow
[Ref.: #11515]	Geographic location (country and/or sea, region)	Oldenburg, Ostfriesland
[Ref.: #11515]	Country	Germany
[Ref.: #11515]	Country ISO 3 Code	DEU
[Ref.: #11515]	Continent	Europe
[Ref.: #11515]	Geographic location	53.1435°/8.2146°
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11515]	Pathogenicity (human)	yes
[Ref.: #11515]	Pathogenicity (animal)	yes
[Ref.: #11515]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium avium subsp. paratuberculosis DSM 44135	GCA_013357385	complete	GenBank	1770 tax ID	*
[Ref.: #66792]	Mycobacterium avium subsp. paratuberculosis strain DSM 44135	1770.123	complete	PATRIC	1770 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium avium subsp. paratuberculosis DSM 44135 NCBI: GCA_013357385.1
[Ref.: #69480]	motile	no	95.33	no
[Ref.: #69480]	flagellated	no	98.858	no
[Ref.: #69480]	gram-positive	yes	90.158	no
[Ref.: #69480]	anaerobic	no	99.553	no
[Ref.: #69480]	aerobic	yes	91.118	no
[Ref.: #69480]	halophile	no	91.8	no
[Ref.: #69480]	spore-forming	no	85.964	no
[Ref.: #69480]	glucose-util	yes	63.197	no
[Ref.: #69480]	thermophile	no	97.022	yes
[Ref.: #69480]	glucose-ferment	no	93.085	no

Availability in culture collections External links

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Culture collection no.

DSM 44135

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SI-ID 50503

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence and Manual Reannotation of Mycobacterium avium subsp. paratuberculosis Strain DSM 44135.	Goethe R, Basler T, Meissner T, Goethe E, Sproer C, Swiderski J, Gerlach GF, Weiss S, Jarek M, Bunk B	Microbiol Resour Announc	10.1128/MRA.00711-20	2020	*

References

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Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44135

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77839

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50503.1 )

* These data were automatically processed and therefore are not curated

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Mycobacterium avium subsp. paratuberculosis DSM 44135

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