Name: Mycobacterium gastri W-417
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8407

Type strain:

Species: Mycobacterium gastri

Strain Designation: W-417, 14 034 0001

Culture col. no.: DSM 43505, ATCC 15754, ATCC 15980, IMET 10662, TMC 1456, SN 583, JCM 12407, CCUG 20995, CCUG 29062, CCUG 47488, CIP 104530, DSM 43506

Strain history: CIP <- 1995, V. Vincent, Inst. Pasteur, Paris, France: strain 14 034 0001 <- ATCC <- L.G. Wayne: strain W-417

NCBI tax ID(s): 1777 (species)

SI-ID 36475

ATCC 15754, ATCC 15980, CCUG 20995, CIP 104530, DSM 43505, IMET 10662, CCUG 29062, ATCC 25027, CCUG 47488, JCM 12407, CNCTC 7273

Other strains from Mycobacterium gastri

M. gastri DSM 43506, SN 587
M. gastri STI07420(IMET), 50006, IMET 07484, ...
M. gastri STI07422(IMET), 3926, 50019, GdfN887, ...
M. gastri STI07421(IMET), 50017, IMET 07485, ...
M. gastri CCUG 27846

Section

Mycobacterium gastri W-417 is an obligate aerobe, mesophilic bacterium that was isolated from gastric lavage.

mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium gastri**
	Full Scientific Name (LPSN)	Mycobacterium gastri Wayne 1966 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #119556]	Cell shape	rod-shaped

[Ref.: #119556]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.956

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11094]

Culture medium

LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)

[Ref.: #11094]

Culture medium growth

[Ref.: #11094]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11094]

Culture medium composition

expand / minimize

[Ref.: #39727]

Culture medium

MEDIUM 55 - for Mycobacterium

[Ref.: #39727]

Culture medium growth

[Ref.: #119556]

Culture medium

CIP Medium 55

[Ref.: #119556]

Culture medium growth

[Ref.: #119556]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #11094]		growth	37 °C
[Ref.: #39727]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #119556]		growth	37 °C
[Ref.: #119556]	no	growth	10 °C
[Ref.: #119556]	no	growth	45 °C

[Ref.: #11094]	Temperature range	mesophilic
[Ref.: #39727]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #119556]	Temperature range	mesophilic
[Ref.: #119556]	Temperature range	psychrophilic
[Ref.: #119556]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119556]

Oxygen tolerance

obligate aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.867

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119556]	esculin ChEBI	-	hydrolysis
[Ref.: #119556]	nitrate ChEBI	+	reduction
[Ref.: #119556]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #119556]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119556]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119556]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119556]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119556]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119556]	8020	-	+	+	+	-	+	-	+	-	-	+	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11094]	Sample type/isolated from	gastric lavage

[Ref.: #67770]	Sample type/isolated from	Gastric lavage

[Ref.: #119556]	Sample type/isolated from	Human, Gastric lavage
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Gastrointestinal tract

#Stomach

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X52919 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	382
Soil Samples	881
Animal Samples	203
Plant Samples	54
Total Samples	1520

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11094]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119556]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Mycobacterium gastri 16S ribosomal RNA gene, partial sequence	AF480602	1469	ENA	1777 tax ID	*
[Ref.: #20218]	M.gastri 16S ribosomal RNA gene	M59266	145	ENA	1777 tax ID	*
[Ref.: #20218]	Mycobacterium gastri 16S rRNA gene	X52919	1460	ENA	1777 tax ID	*
[Ref.: #20218]	M.gastri DNA for internal transcribed spacer between 16S rRNA and 23S rRNA genes	X97633	285	ENA	1777 tax ID	*
[Ref.: #20218]	Mycobacterium gastri strain CIP 104530 16S ribosomal RNA gene, partial sequence	AF547927	554	ENA	1777 tax ID	*
[Ref.: #20218]	Mycobacterium gastri DNA for 16S rRNA, internal transcribed spacer, 23S rRNA	AB026697	443	ENA	1777 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycobacterium gastri 'Wayne'	GCA_000521195	contig	GenBank	1436723 tax ID
[Ref.: #67770]	Mycobacterium gastri DSM 43505	GCA_002102175	contig	GenBank	1777 tax ID
[Ref.: #66792]	Mycobacterium gastri strain DSM 43505	1777.3	wgs	PATRIC	1777 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium gastri strain DSM 43505 PATRIC: 1777.3
[Ref.: #69481]	spore-forming	no	88	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium gastri strain DSM 43505 PATRIC: 1777.3
[Ref.: #69480]	motile	no	96.072	no
[Ref.: #69480]	gram-positive	yes	89.083	no
[Ref.: #69480]	anaerobic	no	98.11	no
[Ref.: #69480]	aerobic	yes	87.077	no
[Ref.: #69480]	halophile	no	94.06	no
[Ref.: #69480]	spore-forming	no	85.052	no
[Ref.: #69480]	thermophile	no	96.901	yes
[Ref.: #69480]	glucose-util	yes	66.726	no
[Ref.: #69480]	flagellated	no	99.064	no
[Ref.: #69480]	glucose-ferment	no	90.024	no

Availability in culture collections External links

[Ref.: #11094]

Culture collection no.

DSM 43505, ATCC 15754, ATCC 15980, IMET 10662, TMC 1456, SN 583, JCM 12407, CCUG 20995, CCUG 29062, CCUG 47488, CIP 104530, DSM 43506

[Ref.: #77806]

SI-ID 36475

References

#11094

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43505

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39727 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77806

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36475.1 )

#119556 Collection of Institut Pasteur ; Curators of the CIP; CIP 104530
* These data were automatically processed and therefore are not curated

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Mycobacterium gastri strain DSM 43505

Mycobacterium gastri strain DSM 43505

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