Mycobacterium terrae F 628 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from sputum and gastric lavage specimens from human.
Gram-positive rod-shaped aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Mycobacteriaceae |
| Genus Mycobacterium |
| Species Mycobacterium terrae |
| Full scientific name Mycobacterium terrae Wayne 1966 (Approved Lists 1980) |
| Synonyms (1) |
| BacDive ID | Other strains from Mycobacterium terrae (2) | Type strain |
|---|---|---|
| 8352 | M. terrae W173, DSM 43540, SN 2701 | |
| 141272 | M. terrae CCUG 532 |
| 55433 | Incubation period3-5 days |
| @ref: | 10883 |
| multimedia content: | DSM_43227-1.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_43227-1.jpg |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref: | 10883 |
| multimedia content: | DSM_43227.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_43227.jpg |
| caption: | Medium 645 37°C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 10883 | LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) | Medium recipe at MediaDive | Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water | ||
| 10883 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | Medium recipe at MediaDive | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water | ||
| 36552 | MEDIUM 55 - for Mycobacterium | ||||
| 123460 | CIP Medium 55 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68369 | 17634 ChEBI | D-glucose | - | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68369 | 25115 ChEBI | malate | - | assimilation | from API 20NE |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 68379 | 17632 ChEBI | nitrate | + | reduction | from API Coryne |
| 123460 | 17632 ChEBI | nitrate | + | reduction | |
| 68369 | 17632 ChEBI | nitrate | + | reduction | from API 20NE |
| 123460 | 16301 ChEBI | nitrite | - | reduction | |
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68379 | 16199 ChEBI | urea | - | hydrolysis | from API Coryne |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68379 | alkaline phosphatase | + | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | - | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 123460 | amylase | - | ||
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 123460 | beta-galactosidase | + | 3.2.1.23 | |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 123460 | caseinase | - | 3.4.21.50 | |
| 123460 | catalase | + | 1.11.1.6 | |
| 123460 | DNase | - | ||
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 123460 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 123460 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 68379 | gelatinase | - | from API Coryne | |
| 123460 | lecithinase | - | ||
| 123460 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 123460 | oxidase | - | ||
| 123460 | protease | - | ||
| 68379 | pyrazinamidase | - | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 123460 | tween esterase | - | ||
| 123460 | urease | - | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68379 | urease | - | 3.5.1.5 | from API Coryne |
| 68382 | valine arylamidase | - | from API zym |
| @ref | Control | Alkaline phosphatase | Esterase (C 4) | 2-naphtyl caprylateEsterase Lipase (C 8) | Lipase (C 14) | L-leucyl-2-naphthylamideLeucine arylamidase | L-valyl-2-naphthylamideValine arylamidase | L-cystyl-2-naphthylamideCystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10883 | - | +/- | +/- | + | - | +/- | - | - | - | - | + | - | - | - | - | - | +/- | - | - | - | |
| 123460 | - | + | + | + | - | + | - | + | - | - | + | + | - | + | - | - | + | - | - | - | |
| 10883 | - | - | +/- | + | - | - | - | - | - | - | + | +/- | - | - | - | - | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 50818_H01 assembly for Mycolicibacter terrae NCTC10856 | complete | 1788 | 97.54 | ||||
| 66792 | ASM1072712v1 assembly for Mycolicibacter terrae JCM 12143 | complete | 1788 | 97.02 | ||||
| 67770 | ASM210195v1 assembly for Mycolicibacter terrae CIP 104321 | contig | 1788 | 68.34 | ||||
| 66792 | ASM2582200v1 assembly for Mycolicibacter terrae DSM 43227 | scaffold | 1788 | 52.71 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Mycobacterium terrae strain ATCC 15755 16S ribosomal RNA gene, partial sequence | DQ058407 | 1374 | 1788 | ||
| 20218 | M.terrae 16S ribosomal RNA | M29568 | 1363 | 1788 | ||
| 20218 | M.terrae 16S ribosomal RNA gene | M59271 | 146 | 1788 | ||
| 20218 | Mycobacterium terrae 16S rRNA gene | X52925 | 1466 | 1788 | ||
| 20218 | Mycobacterium terrae strain CIP 104321 16S ribosomal RNA gene, partial sequence | AF547970 | 556 | 1788 | ||
| 20218 | Mycobacterium terrae 16S ribosomal RNA gene, partial sequence | HM770865 | 1486 | 1788 | ||
| 20218 | Mycobacterium terrae strain CIP104321 16S ribosomal RNA gene, partial sequence | JN571180 | 479 | 1788 | ||
| 124043 | Mycolicibacter terrae strain CECT 3028 16S ribosomal RNA gene, partial sequence. | OK538962 | 837 | 1788 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 52.70 | no |
| 125439 | motility | BacteriaNetⓘ | no | 79.80 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 96.90 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 99.20 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.74 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 94.56 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 83.62 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 69.81 | no |
| 125438 | thermophilic | thermophileⓘ | no | 94.88 | no |
| 125438 | flagellated | motile2+ⓘ | no | 91.00 | no |
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| #10883 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43227 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #36552 | ; Curators of the CIP; |
| #55433 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 42429 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68369 | Automatically annotated from API 20NE . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #123460 | Collection of Institut Pasteur ; Curators of the CIP; CIP 104321 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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