Name: Mycobacterium longobardum FI-07034
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8346

Type strain:

Species: Mycobacterium longobardum

Strain Designation: FI-07034

Culture col. no.: DSM 45394, CCUG 58460, JCM 32217

Strain history: CCUG 58460 <-- E. Tortoli; Careggi Hosp., Italy; FI-07034 <-- V. Penati <-- S. Pierdomenico.

NCBI tax ID(s): 1108812 (species)

SI-ID 407449

DSM 45394, CCUG 58460

Special Collections

Section

Mycobacterium longobardum FI-07034 is a microaerophile, coccus-shaped human pathogen that was isolated from sputum from an Italian patient suffering from broncho-pneumonitis.

coccus-shaped
human pathogen
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium longobardum**
	Full Scientific Name (LPSN)	Mycobacterium longobardum Tortoli et al. 2013

Synonym

Mycolicibacter longobardus

Information on morphological and physiological properties Morphology

[Ref.: #30561]	Cell shape	coccus-shaped

[Ref.: #69480]	Motility	no Confidence in %90.5

[Ref.: #61692]

Incubation period

3-5 days

[Ref.: #30561]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16583]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #16583]

Culture medium growth

[Ref.: #16583]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16583]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16583]	growth	37 °C
[Ref.: #30561]	growth	25-37 °C
[Ref.: #30561]	optimum	31 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #61692]

Oxygen tolerance

microaerophile

[Ref.: #30561]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30561]		nitrate ChEBI	+	reduction

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30561]		arylsulfatase	+	3.1.6.1
[Ref.: #30561]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16583]	Sample type/isolated from	sputum from an Italian patient suffering from broncho-pneumonitis
[Ref.: #16583]	Geographic location (country and/or sea, region)	Lombardy
[Ref.: #16583]	Country	Italy
[Ref.: #16583]	Country ISO 3 Code	ITA
[Ref.: #16583]	Continent	Europe

[Ref.: #61692]	Sample type/isolated from	Human clinical sample
[Ref.: #61692]	Country	Italy
[Ref.: #61692]	Country ISO 3 Code	ITA
[Ref.: #61692]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Sputum from an Italian patient suffering from broncho-pneumonitis
[Ref.: #67770]	Geographic location (country and/or sea, region)	Lombardy
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Infection	#Patient	-
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16583]	Pathogenicity (human)	yes, in single cases
[Ref.: #16583]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16583]	Mycobacterium longobardum strain DSM 45394 16S ribosomal RNA gene, partial sequence	JN571166	1500	GenBank ENA	1108812 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycolicibacter longobardus DSM 45394	GCA_002102265	contig	GenBank ENA	1108812 tax ID
[Ref.: #66792]	Mycobacterium longobardum strain DSM 45394	1108812.3	wgs	PATRIC	1108812 tax ID	*
[Ref.: #66792]	Mycolicibacter longobardus DSM 45394	2865385185	draft	JGI IMG/M	1108812 tax ID	*
[Ref.: #66792]	Mycolicibacter longobardus DSM 45394	GCA_025823135	scaffold	GenBank ENA	1108812 tax ID	*

[Ref.: #67770]

GC-content

67.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium longobardum strain DSM 45394 PATRIC: 1108812.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium longobardum strain DSM 45394 PATRIC: 1108812.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.664	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.506	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	67.741	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.318	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.4	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	no

Availability in culture collections External links

[Ref.: #16583]

Culture collection no.

DSM 45394, CCUG 58460, JCM 32217

[Ref.: #77748]

SI-ID 407449

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Survey of 150 strains belonging to the Mycobacterium terrae complex and description of Mycobacterium engbaekii sp. nov., Mycobacterium heraklionense sp. nov. and Mycobacterium longobardum sp. nov.	Tortoli E, Gitti Z, Klenk HP, Lauria S, Mannino R, Mantegani P, Mariottini A, Neonakis I	Int J Syst Evol Microbiol	10.1099/ijs.0.038737-0	2012	*

References

#16583

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45394

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30561

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26892 (see below)

#61692 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58460

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77748

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407449.1 )

#26892

IJSEM 401 2013 ( DOI 10.1099/ijs.0.038737-0 , PubMed 22447702 )

* These data were automatically processed and therefore are not curated

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Mycobacterium longobardum strain DSM 45394

Mycobacterium longobardum strain DSM 45394

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