Name: Mycobacterium peregrinum Bojalil 40
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8276

Type strain:

Species: Mycobacterium peregrinum

Strain Designation: Bojalil 40, 6020, 14 041 0020, 40

Culture col. no.: DSM 43271, ATCC 14467, ATCC 23023, IMET 10608, NCTC 10264, TMC 1547, JCM 12142, ATCC 23036, CCUG 27976, CCUG 41354, CECT 3023, CIP 105382, KCTC 9615, LMG 19256, PCM 639

Strain history: CIP <- 1998, V. Vincent, Inst. Pasteur, Paris, France: strain 14 041 0020 <- ATCC <- L.F. Bojalil: strain 40 <- Hosp. Infantil, Mexico: strain 6020

NCBI tax ID(s): 43304 (species)

SI-ID 13222

LMG 19256, ATCC 14467, ATCC 23023, ATCC 23036, DSM 43271, CIP 105382, IMET 10608, NCTC 10264, CECT 3023, KCTC 9615, CCUG 41354, JCM 12142, CCUG 27976, CNCTC 7271

Special Collections

Other strains from Mycobacterium peregrinum

Section

Mycobacterium peregrinum Bojalil 40 is an obligate aerobe human pathogen that was isolated from bronchial aspiration.

human pathogen
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium peregrinum**
	Full Scientific Name (LPSN)	Mycobacterium peregrinum (ex Bojalil et al. 1962) Kusunoki and Ezaki 1992

Synonym

Mycolicibacterium peregrinum

Information on morphological and physiological properties Morphology

[Ref.: #121676]	Cell shape	rod-shaped

[Ref.: #121676]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36366]

Culture medium

MEDIUM 55 - for Mycobacterium

[Ref.: #36366]

Culture medium growth

[Ref.: #10803]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #10803]

Culture medium growth

[Ref.: #10803]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #121676]

Culture medium

CIP Medium 72

[Ref.: #121676]

Culture medium growth

[Ref.: #121676]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #121676]

Culture medium

CIP Medium 55

[Ref.: #121676]

Culture medium growth

[Ref.: #121676]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #10803]		growth	37 °C
[Ref.: #36366]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #121676]		growth	25-37 °C
[Ref.: #121676]	no	growth	10 °C
[Ref.: #121676]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #121676]

Oxygen tolerance

obligate aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121676]	hippurate ChEBI	-	hydrolysis
[Ref.: #121676]	nitrate ChEBI	+	reduction
[Ref.: #121676]	nitrate ChEBI	-	respiration
[Ref.: #121676]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #121676]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121676]	amylase	-
[Ref.: #121676]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121676]	caseinase	-	3.4.21.50
[Ref.: #121676]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #121676]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121676]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #121676]	gelatinase	-
[Ref.: #121676]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #121676]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121676]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121676]	tween esterase	-
[Ref.: #121676]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121676]	1121	not determinedn.d.	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121676]	8653	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10803]	Sample type/isolated from	bronchial aspiration

[Ref.: #67770]	Sample type/isolated from	Bronchial aspiration of a child
[Ref.: #67770]	Country	Mexico
[Ref.: #67770]	Country ISO 3 Code	MEX
[Ref.: #67770]	Continent	North America

[Ref.: #121676]	Sample type/isolated from	Human, Child, bronchial aspiration
[Ref.: #121676]	Country	Mexico
[Ref.: #121676]	Country ISO 3 Code	MEX
[Ref.: #121676]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Aspirate
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10803]	Pathogenicity (human)	yes
[Ref.: #10803]	Pathogenicity (animal)	yes
[Ref.: #10803]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121676]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycolicibacterium peregrinum strain CIP 105382 16S ribosomal RNA gene, partial sequence	AY457069	1483	GenBank ENA	43304 tax ID
[Ref.: #20218]	Mycobacterium peregrinum 16S ribosomal RNA gene, partial sequence	AF130308	1440	GenBank ENA	43304 tax ID	*
[Ref.: #20218]	Mycobacterium peregrinum partial 16S rRNA gene, strain ATCC14467	AJ422046	1077	GenBank ENA	43304 tax ID	*
[Ref.: #20218]	Mycobacterium peregrinum partial 16S rRNA gene, strain NCTC 10264	AM884319	551	GenBank ENA	43304 tax ID	*
[Ref.: #20218]	Mycolicibacterium peregrinum strain ATCC 14467 16S ribosomal RNA, partial sequence	AF058712	1469	GenBank ENA	43304 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycolicibacterium peregrinum DSM 43271	GCA_002102345	contig	GenBank ENA	43304 tax ID
[Ref.: #66792]	Mycobacterium peregrinum strain DSM 43271	43304.9	wgs	PATRIC	43304 tax ID	*
[Ref.: #66792]	Mycolicibacterium peregrinum DSM 43271	GCA_025822425	scaffold	GenBank ENA	43304 tax ID	*

[Ref.: #67770]

GC-content

66.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium peregrinum strain DSM 43271 PATRIC: 43304.9
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.931	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.449	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	65.001	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.378	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

[Ref.: #10803]

Culture collection no.

DSM 43271, ATCC 14467, ATCC 23023, IMET 10608, NCTC 10264, TMC 1547, JCM 12142, ATCC 23036, CCUG 27976, CCUG 41354, CECT 3023, CIP 105382, KCTC 9615, LMG 19256, PCM 639

[Ref.: #77678]

SI-ID 13222

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Multicenter evaluation of mycobacteria identification by PCR restriction enzyme analysis in laboratories from Latin America and the Caribbean.	Leao SC, Bernardelli A, Cataldi A, Zumarraga M, Robledo J, Realpe T, Mejia GI, da Silva Telles MA, Chimara E, Velazco M, Fernandez J, Rodrigues PA, Guerrero MI, Leon CI, Porras TB, Rastogi N, Goh KS, Suffys P, da Silva Rocha A, dos Santos Netto D, Ritacco V, Lopez B, Barrera L, Palomino JC, Martin A, Portaels F	J Microbiol Methods	10.1016/j.mimet.2004.11.015	2004	*
Phylogeny	Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to species status: Mycobacterium abscessus comb. nov.	Kusunoki S, Ezaki T	Int J Syst Bacteriol	10.1099/00207713-42-2-240	1992	*

References

#10803

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43271

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36366 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77678

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13222.1 )

#121676 Collection of Institut Pasteur ; Curators of the CIP; CIP 105382
* These data were automatically processed and therefore are not curated

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Mycobacterium peregrinum strain DSM 43271

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