Mycobacterium peregrinum (DSM 43271, ATCC 14467, ATCC 23023)

Name: Mycobacterium peregrinum (DSM 43271, ATCC 14467, ATCC 23023)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8276

Type strain

Strain Designation Bojalil 40, 6020, 14 041 0020, 40

Culture col. no. DSM 43271 ATCC 14467 ATCC 23023 IMET 10608 NCTC 10264 14 more

NCBI tax ID(s) 43304

Special Collections DSMZ CCUG JCM KCTC CIP

Links

Mycobacterium peregrinum Bojalil 40 is an obligate aerobe, mesophilic, rod-shaped human pathogen that was isolated from bronchial aspiration.

rod-shaped obligate aerobe mesophilic human pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 13222

LMG 19256,ATCC 14467,ATCC 23023,ATCC 23036,DSM 43271,CT1997-00462,CIP 105382,IMET 10608,NCTC 10264,CECT 3023,KCTC 9615,CCUG 41354,JCM 12142,CCUG 27976,CNCTC 7271

@ref 20215

Last LPSN update 2025-12-16 09:48:47

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium peregrinum

Full scientific name Mycobacterium peregrinum (ex Bojalil et al. 1962) Kusunoki and Ezaki 1992

Synonyms (1)

Mycolicibacterium peregrinum

BacDive ID	Other strains from **Mycobacterium peregrinum** (3)	Type strain
8216	M. peregrinum DSM 43533, SN 2300
8278	M. peregrinum DSM 46638, IMET 10654, SN 259 Typ B
145277	M. peregrinum CCUG 28064

Morphology

Cell morphology

@ref	Cell shape	Motility	Gram stain	Confidence
121676	rod-shaped
125439			positive	96.7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
36366	MEDIUM 55 - for Mycobacterium
10803	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
121676	CIP Medium 72	Medium recipe at CIP
121676	CIP Medium 55	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
10803	positive	growth	37	mesophilic
36366	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
121676	positive	growth	25-37	mesophilic
121676	negative	growth	10
121676	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
121676	obligate aerobe
125439	obligate aerobe	98.2

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
121676	606565 ChEBI	hippurate	-	hydrolysis
121676	17632 ChEBI	nitrate	+	reduction
121676	17632 ChEBI	nitrate	-	respiration
121676	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121676	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121676	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
121676	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121676	caseinase	-	3.4.21.50
121676	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
121676	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121676	gamma-glutamyltransferase	-	2.3.2.2
121676	gelatinase	-
121676	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
121676	lipase	-
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121676	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
121676	tween esterase	-
121676	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121676	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121676	not determinedn.d.	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Aspirate
#Host Body-Site	#Oral cavity and airways	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
10803	bronchial aspiration
67770	Bronchial aspiration of a child	Mexico	MEX	North America
121676	Human, Child, bronchial aspiration	Mexico	MEX	North America

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
10803			2	Risk group (German classification) According to TRBA 466
121676			1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2582242v1 assembly for Mycolicibacterium peregrinum DSM 43271	scaffold	GCA_025822425	43304.20	8115297900	43304	66.77
67770	ASM210234v1 assembly for Mycolicibacterium peregrinum DSM 43271	contig	GCA_002102345	43304.9	8111209266	43304	63.95

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Mycolicibacterium peregrinum strain ATCC 14467 16S ribosomal RNA, partial sequence	AF058712	1469	43304
20218	Mycobacterium peregrinum 16S ribosomal RNA gene, partial sequence	AF130308	1440	43304
20218	Mycobacterium peregrinum partial 16S rRNA gene, strain ATCC14467	AJ422046	1077	43304
20218	Mycobacterium peregrinum partial 16S rRNA gene, strain NCTC 10264	AM884319	551	43304
67770	Mycolicibacterium peregrinum strain CIP 105382 16S ribosomal RNA gene, partial sequence	AY457069	1483	43304
124043	Mycobacterium peregrinum strain CIP 105382 16S ribosomal RNA gene, partial sequence.	AF547956	540	43304
124043	Mycolicibacterium peregrinum strain ATCC 14467(T) 16S ribosomal RNA gene, partial sequence.	MN688249	1425	43304

GC content

@ref	GC-content (mol%)	Method
67770	66.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycolicibacterium peregrinum DSM 43271
NCBI: GCA_025822425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	66.30	no
125439	motility	BacteriaNetⓘ	no	80.60	no
125439	gram_stain	BacteriaNetⓘ	positive	96.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium peregrinum strain DSM 43271
PATRIC: 43304.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.93	no
125438	anaerobic	anaerobicⓘ	no	97.45	yes
125438	spore-forming	spore-formingⓘ	no	65.00	no
125438	aerobic	aerobicⓘ	yes	86.38	yes
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	In Vitro Antimicrobial Activities of Tigecycline, Eravacycline, Omadacycline, and Sarecycline against Rapidly Growing Mycobacteria.	Zhang T, Du J, Dong L, Wang F, Zhao L, Jia J, Wang C, Cheng M, Yu X, Huang H.	Microbiol Spectr	10.1128/spectrum.03238-22	2023
	In Vitro Activity of the Sudapyridine (WX-081) against Non-Tuberculous Mycobacteria Isolated in Beijing, China.	Zhu R, Shang Y, Chen S, Xiao H, Ren R, Wang F, Xue Y, Li L, Li Y, Chu N, Huang H.	Microbiol Spectr	10.1128/spectrum.01372-22	2022
	In vitro and intracellular inhibitory activities of nosiheptide against Mycobacterium abscessus.	Zhu R, Yu X, Zhang T, Kong Y, Wang F, Jia J, Xue Y, Huang H.	Front Microbiol	10.3389/fmicb.2022.926361	2022
Pathogenicity	In Vitro Activities of Bedaquiline and Delamanid against Nontuberculous Mycobacteria Isolated in Beijing, China.	Yu X, Gao X, Li C, Luo J, Wen S, Zhang T, Ma Y, Dong L, Wang F, Huang H.	Antimicrob Agents Chemother	10.1128/aac.00031-19	2019
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
	Differential Immune Responses and Underlying Mechanisms of Metabolic Reprogramming in Smooth and Rough Variants of Mycobacterium peregrinum Infections.	Lee JW, Kim HW, Yu AR, Yoon HS, Kang M, Park HW, Lee SK, Whang J, Kim JS.	Pathogens	10.3390/pathogens12121446	2023
	Gene Sequencing and Phylogenetic Analysis: Powerful Tools for an Improved Diagnosis of Fish Mycobacteriosis Caused by Mycobacterium fortuitum Group Members.	Mugetti D, Tomasoni M, Pastorino P, Esposito G, Menconi V, Dondo A, Prearo M.	Microorganisms	10.3390/microorganisms9040797	2021
	Autofluorescence as a tool for structural analysis of biofilms formed by nonpigmented rapidly growing mycobacteria.	Munoz-Egea MC, Garcia-Pedrazuela M, Mahillo I, Garcia MJ, Esteban J.	Appl Environ Microbiol	10.1128/aem.03149-12	2013
	Development of 2nd generation aminomethyl spectinomycins that overcome native efflux in Mycobacterium abscessus.	Phelps GA, Cheramie MN, Fernando DM, Selchow P, Meyer CJ, Waidyarachchi SL, Dharuman S, Liu J, Meuli M, Molin MD, Killam BY, Murphy PA, Reeve SM, Wilt LA, Anderson SM, Yang L, Lee RB, Temrikar ZH, Lukka PB, Meibohm B, Polikanov YS, Hobbie SN, Bottger EC, Sander P, Lee RE.	Proc Natl Acad Sci U S A	10.1073/pnas.2314101120	2024
Pathogenicity	In vitro activities of tigecycline and 10 other antimicrobials against nonpigmented rapidly growing mycobacteria.	Fernandez-Roblas R, Martin-de-Hijas NZ, Fernandez-Martinez AI, Garcia-Almeida D, Gadea I, Esteban J.	Antimicrob Agents Chemother	10.1128/aac.00695-08	2008
Pathogenicity	Effect of ciprofloxacin in the ultrastructure and development of biofilms formed by rapidly growing mycobacteria.	Munoz-Egea MC, Garcia-Pedrazuela M, Mahillo I, Esteban J.	BMC Microbiol	10.1186/s12866-015-0359-y	2015
Pathogenicity	In vitro susceptibilities of rapidly growing mycobacteria to telithromycin (HMR 3647) and seven other antimicrobials.	Fernandez-Roblas R, Esteban J, Cabria F, Lopez JC, Jimenez MS, Soriano F.	Antimicrob Agents Chemother	10.1128/aac.44.1.181-182.2000	2000
	Microbial community structure analysis in Acer palmatum bark and isolation of novel bacteria IAD-21 of the candidate division FBP.	Kobayashi K, Aoyagi H.	PeerJ	10.7717/peerj.7876	2019
Metabolism	Growth of mycobacteria on carbon monoxide and methanol.	Park SW, Hwang EH, Park H, Kim JA, Heo J, Lee KH, Song T, Kim E, Ro YT, Kim SW, Kim YM.	J Bacteriol	10.1128/jb.185.1.142-147.2003	2003
Phylogeny	Lack of usefulness of carbon utilization tests for identification of Mycobacterium mucogenicum.	Conville PS, Witebsky FG.	J Clin Microbiol	10.1128/jcm.39.7.2725-2728.2001	2001
	Tetracycline resistance determinants in Mycobacterium and Streptomyces species.	Pang Y, Brown BA, Steingrube VA, Wallace RJ, Roberts MC.	Antimicrob Agents Chemother	10.1128/aac.38.6.1408	1994
Phylogeny	Rapid identification of Rhodococcus equi by a PCR assay targeting the choE gene.	Ladron N, Fernandez M, Aguero J, Gonzalez Zorn B, Vazquez-Boland JA, Navas J.	J Clin Microbiol	10.1128/jcm.41.7.3241-3245.2003	2003
Enzymology	Evaluation of the invader assay with the BACTEC MGIT 960 system for prompt isolation and identification of mycobacterial species from clinical specimens.	Ichimura S, Nagano M, Ito N, Shimojima M, Egashira T, Miyamoto C, Ohkusu K, Ezaki T.	J Clin Microbiol	10.1128/jcm.02289-06	2007
Phylogeny	Application of colorimetric microdilution plate hybridization for rapid genetic identification of 22 Mycobacterium species.	Kusunoki S, Ezaki T, Tamesada M, Hatanaka Y, Asano K, Hashimoto Y, Yabuuchi E.	J Clin Microbiol	10.1128/jcm.29.8.1596-1603.1991	1991
Phylogeny	Differential identification of Mycobacterium fortuitum and Mycobacterium chelonei.	David HL, Traore I, Feuillet A.	J Clin Microbiol	10.1128/jcm.13.1.6-9.1981	1981
Pathogenicity	Intrinsic macrolide resistance in Mycobacterium smegmatis is conferred by a novel erm gene, erm(38).	Nash KA.	Antimicrob Agents Chemother	10.1128/aac.47.10.3053-3060.2003	2003
Phylogeny	rpoB-based identification of nonpigmented and late-pigmenting rapidly growing mycobacteria.	Adekambi T, Colson P, Drancourt M.	J Clin Microbiol	10.1128/jcm.41.12.5699-5708.2003	2003
Phylogeny	Variables affecting results of sodium chloride tolerance test for identification of rapidly growing mycobacteria.	Conville PS, Witebsky FG.	J Clin Microbiol	10.1128/jcm.36.6.1555-1559.1998	1998
Enzymology	High-performance liquid chromatography patterns of mycolic acids as criteria for identification of Mycobacterium chelonae, Mycobacterium fortuitum, and Mycobacterium smegmatis.	Butler WR, Kilburn JO.	J Clin Microbiol	10.1128/jcm.28.9.2094-2098.1990	1990
	Effectiveness of ceiling-mounted ultraviolet-C lamps: An experimental study in a biocontainment unit of a tertiary care hospital.	Lee J, Kim EJ, Lim YJ, Kim EO, Bae S, Jung J, Kim SH.	Am J Infect Control	10.1016/j.ajic.2024.06.020	2024
	Bovine Tuberculosis in Wild Boar (Sus scrofa) in Slovenia.	Pate M, Zajc U, Pirs T, Ocepek M, Krt B.	J Wildl Dis	10.7589/jwd-d-23-00123	2024
	Proteomic analysis of nontuberculous bacteria protein spectra as the element of subtyping of strains.	Lyamin AV, Sizova AI, Antipov VA, Ismatullin DD, Milyutkina YS, Kokorev DA.	Int J Mycobacteriol	10.4103/ijmy.ijmy_197_23	2023
Phylogeny	Comparison of laboratory methods for identifying members of the family Mycobacteriaceae.	Lyamin AV, Ereshchenko AA, Gusyakova OA, Yanchenko AV, Kozlov AV, Khaliulin AV.	Int J Mycobacteriol	10.4103/ijmy.ijmy_68_23	2023
	In vitro susceptibility of 147 international clinical Mycobacterium abscessus isolates to epetraborole and comparators by broth microdilution.	Nguyen MH, Calado Nogueira de Moura V, Keepers TR, van Ingen J, Daley CL.	J Antimicrob Chemother	10.1093/jac/dkae461	2025
	Effect of COVID-19 pandemic on incidence of mycobacterial diseases among suspected tuberculosis pulmonary patients in Tehran, Iran.	Aghajani J, Farnia P, Farnia P, Ghanavi J, Saif S, Marjani M, Tabarsi P, Moniri A, Abtahian Z, Hoffner S, Velayati AA.	Int J Mycobacteriol	10.4103/ijmy.ijmy_167_22	2022
	Analysis of nontuberculous mycobacterial infections in Saudi children from a tertiary care hospital perspective.	Abukhalid N, Alzahrani N, Alsager K, Alsowailmi B, Albawardi A.	J Clin Tuberc Other Mycobact Dis	10.1016/j.jctube.2025.100554	2025
Phylogeny	Development of a nucleic acid chromatography assay for the detection of commonly isolated rapidly growing mycobacteria.	Igarashi Y, Chikamatsu K, Sano S, Miyamoto S, Aono A, Osugi A, Morishige Y, Murase Y, Yamada H, Takaki A, Mitarai S.	J Med Microbiol	10.1099/jmm.0.001464	2021
	A universal, high-quality, and high-yield DNA purification method for mycobacteria, including Mycobacterium tuberculosis: large-scale assessment of the chloroform-bead method.	Murase Y, Hosoya M, Morishige Y, Shimomura Y, Nagai M, Tamaru A, Takaki A, Mitarai S, Japan Tuberculosis Genotyping Group (2023), Japan Tuberculosis Genotyping Group.	Microbiol Spectr	10.1128/spectrum.00765-25	2025
	Efficacy of epetraborole against Mycobacteroides abscessus in a mouse model of lung infection.	Rimal B, Lippincott CK, Panthi CM, Xie Y, Keepers TR, Alley M, Lamichhane G.	Antimicrob Agents Chemother	10.1128/aac.00648-24	2024
Enzymology	Pulmonary mycobacteriosis caused by Mycobacterium peregrinum: A case report.	Morita Y, Kondo Y, Takeuchi E.	Medicine (Baltimore)	10.1097/md.0000000000028809	2022
	Disseminated Mycobacterium peregrinum and Mycobacterium avium infection in a patient with AIDS: A case report and review of literature.	Lao CK, Wu TS, Lin KY, Lee MH.	J Clin Tuberc Other Mycobact Dis	10.1016/j.jctube.2022.100314	2022
	Port-a-Cath Infection of Mycobacterium senegalense: First Italian Case Report.	Grassia G, Amisano F, Gaiarsa S, Bagnarino J, Compagno F, Panigari A, Baldanti F, Monzillo V, Barbarini D.	Microorganisms	10.3390/microorganisms12122431	2024
Genetics	Threat in water for drinking and domestic use: Nontuberculous mycobacteria.	Atik D, Oksuz S, Ozturk E, Caliskan E, Akar N, Sungur MA.	Int J Mycobacteriol	10.4103/ijmy.ijmy_82_21	2021
	The in vitro effect of new combinations of carbapenem-beta-lactamase inhibitors for Mycobacterium abscessus.	Froberg G, Ahmed A, Chryssanthou E, Davies Forsman L.	Antimicrob Agents Chemother	10.1128/aac.00528-23	2023
	Mycobacterium peregrinum Pacemaker Pocket Infection: A Case Report and Review of the Literature.	Lazo-Vasquez AF, Gonzales-Zamora JA.	Case Rep Infect Dis	10.1155/2020/8831026	2020
	Drug susceptibility profiles of Mycobacterium abscessus isolated in the state of São Paulo, 2008-2024.	Pedace CS, Arbeit RD, Dos Santos Simeao FC, Gallo JF, de Souza AR, Chimara E.	J Med Microbiol	10.1099/jmm.0.002005	2025
	Selective inhibition of Mycobacterium tuberculosis GpsI unveils a novel strategy to target the RNA metabolism.	Griesser T, Wang R, Angona IP, Rogenmoser J, Obrist J, Schneider G, Sander P.	Nucleic Acids Res	10.1093/nar/gkaf529	2025
Enzymology	An enoyl-ACP reductase inhibitor, NITD-916, expresses anti-Mycobacterium abscessus activity.	Jia Y, Fan J, Tan Z, Li A, He S, Lin Y, Li J, Zhang Z, Li B, Chu H.	Antimicrob Agents Chemother	10.1128/aac.00249-25	2025
	Prosthetic joint infection caused by an imipenem-resistant Mycobacterium senegalense.	Dos Santos LS, de Oliveira Sant'Anna L, Theodoro R, Dos Santos NNC, Armond BKL, Seabra LF, Alvim LB, Araujo MRB.	Braz J Microbiol	10.1007/s42770-023-00960-0	2023
	Identification of apoptosis-related genes as potential biomarkers and therapeutic targets in cystic fibrosis patients progressing to pulmonary nontuberculous mycobacterial disease.	Pan J, Liu A, Xiao S, Ma X.	Sci Rep	10.1038/s41598-025-24346-4	2025
	Evaluation of omadacycline against intracellular Mycobacterium abscessus in an infection model in human macrophages.	Jahanbakhsh S, Howland J, Ndayishimiye Uwineza MO, Thwaites MT, Pillar CM, Serio AW, Anastasiou DM, Hufnagel DA.	JAC Antimicrob Resist	10.1093/jacamr/dlad104	2023
	[Mycobacterium Mageritense Bacteremia after Implantation of Pacemaker;Report of a Case].	Okuyama A, Miyatake T, Arai Y, Naito Y, Murakami T.	Kyobu Geka		2019
Genetics	Isolation and genetic analysis of mycobacteria from suspect tuberculous lesions in slaughtered cattle from Wolaita, Ethiopia.	Zaba MY, Neway S, Farrell D, Denion E, Perets V, Tilahun M, Bobosha K, Cassidy JP, Asmare A, Gordon SV, WHO, WHO.	Access Microbiol	10.1099/acmi.0.000915.v3	2025
Phylogeny	Prevalence and species diversity of nontuberculous mycobacteria in drinking water supply system of Bahía Blanca City, Argentina.	Oriani AS, Marfil MJ, Zumarraga MJ, Baldini MD.	Int J Mycobacteriol	10.4103/ijmy.ijmy_39_19	2019
	Failure among Patients with Non-Tuberculous Mycobacterial Infections in Skin, Soft Tissue, and Musculoskeletal System in Southern Taiwan, 2012-2015.	Hsueh JH, Fang SY, Hsieh YH, Chen LW, Lee SS.	Surg Infect (Larchmt)	10.1089/sur.2018.314	2019
Phylogeny	Comparison of polymerase chain reaction-restriction enzyme analysis method and DNA sequence analysis results in the identification of non-tuberculous mycobacteria.	Appak O, Turkel S, Esen N, Ozkutuk AA.	Acta Microbiol Immunol Hung	10.1556/030.65.2018.027	2018
	Comparison of the molecular FluoroType Mycobacteria VER 1.0 and the Maldi BioTyper Mycobacteria assays for the identification of non-tuberculous mycobacteria.	Guiraud J, Piau C, Enault C, Nkpa Charron E, Ducos D, Lafuente C, Menard A, Peuchant O.	J Clin Microbiol	10.1128/jcm.01206-24	2025
	Draft Genome Sequence of Mycobacterium peregrinum Isolated from an HIV-Positive Patient in South Africa.	Omar SV, Allam M, Joseph L, Mtshali S, Ismail NA, Ismail A.	Genome Announc	10.1128/genomea.00759-17	2017
	CRISPR Interference-Mediated Silencing of the mmpL3 Gene in Mycobacterium smegmatis and Its Impact on Antimicrobial Susceptibility	Yuliani Y, Ilmi A, Petsong S, Sawatpanich A, Chirakul S, Chatsuwan T, Palaga T, Rotcheewaphan S.	Antibiotics (Basel)		2024
	Detection of non-tuberculosus mycobacteria (NTMs) in lung samples using 16S rRNA.	Morais FCL, Bello GL, Costi C, Schmid KB, Soares TDS, Barcellos RB, Unis G, Dias CF, da Silva PEA, Rossetti ML.	Mem Inst Oswaldo Cruz	10.1590/0074-02760220031	2022
	In vitro effects of the new oral beta-lactamase inhibitor xeruborbactam in combination with oral beta-lactams against clinical Mycobacterium abscessus isolates.	Yamatani I, Aono A, Fujiwara K, Asami T, Kamada K, Morishige Y, Igarashi Y, Chikamatsu K, Murase Y, Yamada H, Takaki A, Komiya K, Mitarai S.	Microbiol Spectr	10.1128/spectrum.00084-24	2024
	Mycobacterium peregrinum Skin Infection: Case Report.	Wachholz PA, Sette CS, Caitano do Nascimento D, Soares CT, Diorio SM, Masuda PY.	J Cutan Med Surg	10.1177/1203475415616963	2016
	A study of bacterial community structure of shrimp farms along the Ratnagiri coast, Maharashtra.	Choudhary B, Pawase AS, Ghode GS, Tibile RM, Bhatkar VR, Choudhary D, Choudhary U.	Heliyon	10.1016/j.heliyon.2025.e41712	2025
	Revolutionizing chronic endometritis diagnosis: real-time polymerase chain reaction unveils microbial pathogens in Indian women with abnormal bleeding and reproductive challenges.	Nandagopal M, Rajan N R, Padhiar C, Abhaya M, Bansal U, Ghambir P.	AJOG Glob Rep	10.1016/j.xagr.2024.100377	2024
	Amplification of Hsp 65 gene and usage of restriction endonuclease for identification of non tuberculous rapid grower mycobacterium.	Verma AK, Sarin R, Arora VK, Kumar G, Arora J, Singh P, Myneedu VP.	Indian J Tuberc	10.1016/j.ijtb.2017.08.030	2018
	Evaluation of nucleotide MALDI-TOF-MS for the identification of Mycobacterium species.	Zhu Y, Liu Z, Peng L, Liu B, Wu K, Zhang M, Wang X, Pan J.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1335104	2024
Enzymology	Source-to-tap investigation of the occurrence of nontuberculous mycobacteria in a full-scale chloraminated drinking water system.	Dowdell KS, Potgieter SC, Olsen K, Lee S, Vedrin M, Caverly LJ, LiPuma JJ, Raskin L.	Appl Environ Microbiol	10.1128/aem.00609-24	2024
Enzymology	Mycobacteria in aquarium fish: results of a 3-year survey indicate caution required in handling pet-shop fish.	Kusar D, Zajc U, Jencic V, Ocepek M, Higgins J, Zolnir-Dovc M, Pate M.	J Fish Dis	10.1111/jfd.12558	2017
Phylogeny	Mycobacteriosis associated with Mycobacterium peregrinum infection in Red-crowned Cranes (Grus japonensis) in China.	Liu H, Yan J, Luo J, Yan R, Chen H, Cheng H, Liu D, He H.	J Wildl Dis	10.7589/2013-08-216	2014
	Draft Genome Sequence of Mycobacterium peregrinum Strain CSUR P2098.	Asmar S, Rascovan N, Robert C, Drancourt M.	Genome Announc	10.1128/genomea.01274-15	2015
Enzymology	Verification of Frequency in Species of Nontuberculous Mycobacteria in Kermanshah Drinking Water Supplies Using the PCR-Sequencing Method.	Mohajeri P, Yazdani L, Shahraki AH, Alvandi A, Atashi S, Farahani A, Almasi A, Rezaei M.	Microb Drug Resist	10.1089/mdr.2016.0064	2017
	In Vitro Synergistic Effects of Omadacycline with Other Antimicrobial Agents against Mycobacterium abscessus.	Fujiwara K, Aono A, Asami T, Morimoto K, Kamada K, Morishige Y, Igarashi Y, Chikamatsu K, Murase Y, Yamada H, Takaki A, Mitarai S.	Antimicrob Agents Chemother	10.1128/aac.01579-22	2023
Phylogeny	Mycobacterium spp. in wild game in Slovenia.	Pate M, Zajc U, Kusar D, Zele D, Vengust G, Pirs T, Ocepek M.	Vet J	10.1016/j.tvjl.2015.10.004	2016
	Evaluation of the FluoroType Mycobacteria assay for identification of mycobacteria.	Luukinen B, Antikainen J, Aittoniemi J, Miikkulainen-Lahti T, Hyyrylainen H-L, Patari-Sampo A.	J Clin Microbiol	10.1128/jcm.01054-23	2024
	High Rates of Antimicrobial Resistance in Rapidly Growing Mycobacterial Infections in Taiwan.	Tu HZ, Lee HS, Chen YS, Lee SS.	Pathogens	10.3390/pathogens11090969	2022
	In vitro Susceptibility of Nontuberculous Mycobacteria to Tedizolid.	Zhang H, Hua W, Lin S, Zhang Y, Chen X, Wang S, Chen J, Zhang W.	Infect Drug Resist	10.2147/idr.s362583	2022
	Identification of Nocardia and non-tuberculous Mycobacterium species by MALDI-TOF MS using the VITEK MS coupled to IVD and RUO databases.	Rodriguez-Temporal D, Zvezdanova ME, Benedi P, Marin M, Blazquez-Sanchez M, Ruiz-Serrano MJ, Munoz P, Rodriguez-Sanchez B.	Microb Biotechnol	10.1111/1751-7915.14146	2023
	Correlation of drug exposure and bacterial susceptibility with treatment response for Mycobacterium avium complex lung disease: protocol for a prospective observational cohort study.	Zheng X, Wang L, Davies Forsman L, Zhang Y, Chen Y, Luo X, Liu Y, Bruchfeld J, Hu Y, Alffenaar JC, Sha W, Xu B.	BMJ Open	10.1136/bmjopen-2023-075383	2023
Enzymology	Validation of MALDI-TOF MS devices in reanalysis of unidentified pathogenic bacteria detected in blood cultures.	Imai M, Kimura Y, Tanno D, Saito K, Honda M, Takano Y, Ohashi K, Toyokawa M, Ohana N, Yamadera Y, Shimura H.	Fukushima J Med Sci	10.5387/fms.2020-09	2020
Enzymology	Historical evolution of the diseases caused by non-pigmented rapidly growing mycobacteria in a University Hospital.	Garcia-Coca M, Rodriguez-Sevilla G, Munoz-Egea MC, Perez-Jorge C, Carrasco-Anton N, Esteban J.	Rev Esp Quimioter		2019
	Combining fish and environmental PCR for diagnostics of diseased laboratory zebrafish in recirculating systems.	Miller M, Sabrautzki S, Beyerlein A, Brielmeier M.	PLoS One	10.1371/journal.pone.0222360	2019
	Profile of Nontuberculous Mycobacteria in Patients Suspected of Tuberculosis and Drug-Resistant Tuberculosis.	Sharma M, Malhotra B, Tiwari J, Bhargava S.	J Lab Physicians	10.1055/s-0040-1721160	2020
	Rapid Detection of Clarithromycin and Amikacin Resistance in Mycobacterium abscessus Complex by High-Resolution Melting Curve Analysis.	Li H, Mulati G, Shang Y, Yao C, Wang Y, Ren W, Xue Z, Li S, Pang Y.	Microbiol Spectr	10.1128/spectrum.00574-22	2022
	Diagnostic Utility of a Mycobacterium Multiplex PCR Detection Panel for Tuberculosis and Nontuberculous Mycobacterial Infections.	Uwamino Y, Aono A, Tomita Y, Morimoto K, Kawashima M, Kamata H, Sasaki Y, Nagai H, Hasegawa N, Mitarai S.	Microbiol Spectr	10.1128/spectrum.05162-22	2023
Enzymology	Isolation of nontuberculous mycobacteria from hospital waters in Turkey.	Genc GE, Richter E, Erturan Z.	APMIS	10.1111/apm.12066	2013
	A Comparison of Buffered Tricaine Methanesulfonate (MS-222) and Isoeugenol Anesthesia for Caudal Fin Clipping in Zebrafish (Danio rerio).	Musk GC, Ezzy BJ, Kenchington LM, Hopper WA, Callahan LM.	J Am Assoc Lab Anim Sci	10.30802/aalas-jaalas-20-000027	2020
	In Vitro and In Vivo Properties of CUO246, a Novel Bacterial DNA Gyrase/Topoisomerase IV Inhibitor.	Blais J, Dean CR, Lapointe G, Leeds JA, Ma S, Morris L, Moser HE, Osborne CS, Prosen KR, Richie D, Skepper C, Thompson K, Vo J, Yue Q, Rivkin A.	Antimicrob Agents Chemother	10.1128/aac.00921-22	2022
	Prodrug florfenicol amine is activated by intrinsic resistance to target Mycobacterium abscessus.	Phelps GA, Kurt S, Jenner AR, Anderson SM, Jayasinghe TD, Griffith EC, Thompson CW, Yang L, Wicki B, Bright FK, Loudon V, Wright WC, Srivastava A, Singh A, Thalluri B, Park H, Lee RB, Wright AK, Grant-Chapman O, Conner DK, Troyer BT, Iverson A, Ochoado J, Pagala VR, Wu L, Byrum S, Fu Y, Yuan ZF, High AA, Schulthess B, Rosch JW, Geeleher P, Hobbie SN, Boeck L, Meibohm B, Obregon-Henao A, Sander P, Lee RE.	Nat Microbiol	10.1038/s41564-025-02147-9	2025
Pathogenicity	Determination of MIC Distribution and Mechanisms of Decreased Susceptibility to Bedaquiline among Clinical Isolates of Mycobacterium abscessus.	Li B, Ye M, Guo Q, Zhang Z, Yang S, Ma W, Yu F, Chu H.	Antimicrob Agents Chemother	10.1128/aac.00175-18	2018
	[Pulmonary mycobacteriosis caused by Mycobacterium peregrinum in a young, healthy man].	Sawahata M, Hagiwara E, Ogura T, Komatsu S, Sekine A, Tsuchiya N, Takahashi H.	Nihon Kokyuki Gakkai Zasshi		2010
Enzymology	Characterization of non-tuberculous mycobacterium from humans and water in an Agropastoral area in Zambia.	Monde N, Munyeme M, Muwonge A, Muma JB, Malama S.	BMC Infect Dis	10.1186/s12879-017-2939-y	2018
Genetics	Phenotypic and genomic hallmarks of a novel, potentially pathogenic rapidly growing Mycobacterium species related to the Mycobacterium fortuitum complex.	Gharbi R, Khanna V, Frigui W, Mhenni B, Brosch R, Mardassi H.	Sci Rep	10.1038/s41598-021-91737-8	2021
Phylogeny	Screening, molecular identification, population diversity, and antibiotic susceptibility pattern of Actinomycetes species isolated from meat and meat products of slaughterhouses, restaurants, and meat stores of a developing country, Iran.	Motallebirad T, Mardanshah O, Safarabadi M, Ghaffari K, Orouji MA, Abedi B, Azadi D.	Front Microbiol	10.3389/fmicb.2023.1134368	2023
Enzymology	Multicentre study on the reproducibility of MALDI-TOF MS for nontuberculous mycobacteria identification.	Rodriguez-Temporal D, Alcaide F, Marekovic I, O'Connor JA, Gorton R, van Ingen J, Van den Bossche A, Hery-Arnaud G, Beauruelle C, Orth-Holler D, Palacios-Gutierrez JJ, Tudo G, Bou G, Ceyssens PJ, Garrigo M, Gonzalez-Martin J, Greub G, Hrabak J, Ingebretsen A, Mediavilla-Gradolph MC, Oviano M, Palop B, Pranada AB, Quiroga L, Ruiz-Serrano MJ, Rodriguez-Sanchez B.	Sci Rep	10.1038/s41598-022-05315-7	2022
Phylogeny	Isolation and identification of mycobacteria from captive reptiles.	Ebani VV, Fratini F, Bertelloni F, Cerri D, Tortoli E.	Res Vet Sci	10.1016/j.rvsc.2012.05.006	2012
Pathogenicity	Evaluation of antimicrobial susceptibilities of rapidly growing mycobacteria by Sensititre RAPMYCO panel.	Cavusoglu C, Gurpinar T, Ecemis T.	New Microbiol		2012
	Prevalence of non-tuberculous mycobacteria among previously treated TB patients in the Gulf of Guinea, Africa.	Pokam BDT, Yeboah-Manu D, Ofori S, Guemdjom PW, Teyim PM, Lawson L, Amiteye D, Yhiler NY, Djuikoue IC, Asuquo AE.	IJID Reg	10.1016/j.ijregi.2022.05.003	2022
Pathogenicity	Molecular Analysis of Linezolid-Resistant Clinical Isolates of Mycobacterium abscessus.	Ye M, Xu L, Zou Y, Li B, Guo Q, Zhang Y, Zhan M, Xu B, Yu F, Zhang Z, Chu H.	Antimicrob Agents Chemother	10.1128/aac.01842-18	2019
	Mycobacterium Tuberculosis and Nontuberculous Mycobacteria Isolates from Presumptive Pulmonary Tuberculosis Patients Attending A Tertiary Hospital in Addis Ababa, Ethiopia.	Kahase D, Desta K, Yaregal Z, Yenew B, Driba G, Molalign H, Solomon A, Bekele F.	Ethiop J Health Sci	10.4314/ejhs.v31i1.3	2021
Metabolism	MnoSR removal in Mycobacterium smegmatis triggers broad transcriptional response to 1,3-propanediol and glucose as sole carbon sources.	Plocinska R, Strus K, Korycka-Machala M, Plocinski P, Kuziola M, Zaczek A, Slomka M, Dziadek J.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1427829	2024
	Disseminated mycobacteriosis affecting a prosthetic aortic valve: first case of Mycobacterium peregrinum type III reported in Colombia.	Torres-Duque CA, Diaz C, Vargas L, Serpa EM, Mosquera W, Garzon MC, Mejia G, Garcia LM, Gonzalez LA, Castro CM, Ribon W.	Biomedica	10.7705/biomedica.v30i3.266	2010
	A Case of Mycobacterial Skin Disease Caused by Mycobacterium peregrinum, and a Review of Cutaneous Infection.	Kamijo F, Uhara H, Kubo H, Nakanaga K, Hoshino Y, Ishii N, Okuyama R.	Case Rep Dermatol	10.1159/000337825	2012
Phylogeny	Mycobacterium mucogenicum and other non-tuberculous mycobacteria in potable water of a trauma hospital: a potential source for human infection.	Fernandez-Rendon E, Cerna-Cortes JF, Ramirez-Medina MA, Helguera-Repetto AC, Rivera-Gutierrez S, Estrada-Garcia T, Gonzalez-Y-Merchand JA.	J Hosp Infect	10.1016/j.jhin.2011.10.003	2012
	Behavioral and Reproductive Effects of Environmental Enrichment and Pseudoloma neurophilia infection on Adult Zebrafish (Danio rerio).	Estes JM, Altemara ML, Crim MJ, Fletcher CA, Whitaker JW.	J Am Assoc Lab Anim Sci	10.30802/aalas-jaalas-20-000113	2021
Phylogeny	Molecular Identification of Mycobacterium Species of Public Health Importance in Cattle in Zimbabwe by 16S rRNA Gene Sequencing.	Padya L, Chin'ombe N, Magwenzi M, Mbanga J, Ruhanya V, Nziramasanga P.	Open Microbiol J	10.2174/1874285801509010038	2015
	AR-12 Exhibits Direct and Host-Targeted Antibacterial Activity toward Mycobacterium abscessus.	Zhang S, Zou Y, Guo Q, Chen J, Xu L, Wan X, Zhang Z, Li B, Chu H.	Antimicrob Agents Chemother	10.1128/aac.00236-20	2020
Pathogenicity	In Vitro Susceptibility Testing of Bedaquiline against Mycobacterium abscessus Complex.	Brown-Elliott BA, Wallace RJ.	Antimicrob Agents Chemother	10.1128/aac.01919-18	2019
Pathogenicity	In Vitro Activity of Bedaquiline and Delamanid against Nontuberculous Mycobacteria, Including Macrolide-Resistant Clinical Isolates.	Kim DH, Jhun BW, Moon SM, Kim SY, Jeon K, Kwon OJ, Huh HJ, Lee NY, Shin SJ, Daley CL, Koh WJ.	Antimicrob Agents Chemother	10.1128/aac.00665-19	2019
Pathogenicity	Mycobacterium peregrinum: bactericidal activity of antibiotics alone and in combination.	Santos A, Cremades R, Rodriguez JC, Garcia-Pachon E, Ruiz M, Royo G.	J Infect Chemother	10.1007/s10156-008-0611-6	2008
Phylogeny	Mycobacterium peregrinum infection in farmed European tench (Tinca tinca L.).	Aranaz A, Gibello A, Alvarez J, Mata AI, Rodriguez A, Fallola C, Fernandez-Garayzabal JF, Dominguez L.	Vet Microbiol	10.1016/j.vetmic.2008.04.017	2008
Phylogeny	Potentially pathogenic nontuberculous mycobacteria found in aquatic systems. Analysis from a reclaimed water and water distribution system in Mexico City.	Castillo-Rodal AI, Mazari-Hiriart M, Lloret-Sanchez LT, Sachman-Ruiz B, Vinuesa P, Lopez-Vidal Y.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-011-1359-y	2012
Pathogenicity	In Vitro Susceptibility Testing of a Novel Benzimidazole, SPR719, against Nontuberculous Mycobacteria.	Brown-Elliott BA, Rubio A, Wallace RJ.	Antimicrob Agents Chemother	10.1128/aac.01503-18	2018
Phylogeny	Surgical site infection due to Mycobacterium peregrinum: a case report and literature review.	Nagao M, Sonobe M, Bando T, Saito T, Shirano M, Matsushima A, Fujihara N, Takakura S, Iinuma Y, Ichiyama S.	Int J Infect Dis	10.1016/j.ijid.2008.06.018	2009
	Molecular Identification of Strains within the Mycobacterium abscessus Complex and Determination of Resistance to Macrolides and Aminoglycosides.	Kania K, Wojcik K, Czekajewska J, Grzesiak M, Klesiewicz K.	Pol J Microbiol	10.33073/pjm-2023-048	2023
Enzymology	Importance of antibiotic penetration in the antimicrobial resistance of biofilm formed by non-pigmented rapidly growing mycobacteria against amikacin, ciprofloxacin and clarithromycin.	Ortiz-Perez A, Martin-de-Hijas N, Alonso-Rodriguez N, Molina-Manso D, Fernandez-Roblas R, Esteban J.	Enferm Infecc Microbiol Clin	10.1016/j.eimc.2010.08.016	2011
Enzymology	Surgical wound infection following open humeral fracture caused by Mycobacterium houstonense: a case report.	Tian L, Zhang Z, Chen Z, Sun Z.	BMC Infect Dis	10.1186/s12879-019-3979-2	2019
	Efflux Pumps Contribute to Intrinsic Clarithromycin Resistance in Clinical, Mycobacterium abscessus Isolates.	Guo Q, Chen J, Zhang S, Zou Y, Zhang Y, Huang D, Zhang Z, Li B, Chu H.	Infect Drug Resist	10.2147/idr.s239850	2020
Phylogeny	Utility of high-performance liquid chromatography analysis of mycolic acids and partial 16S rRNA gene sequencing for routine identification of Mycobacterium spp. in a national reference laboratory.	Toney NC, Toney SR, Butler WR.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2010.02.011	2010
Genetics	Draft genome sequences of Mycolicibacterium peregrinum isolated from a pig with lymphadenitis and from soil on the same Japanese pig farm.	Komatsu T, Ohya K, Sawai K, Odoi JO, Otsu K, Ota A, Ito T, Kawai M, Maruyama F.	BMC Res Notes	10.1186/s13104-019-4380-3	2019
Phylogeny	Careful use of 16S rRNA gene sequence similarity values for the identification of Mycobacterium species.	Beye M, Fahsi N, Raoult D, Fournier PE.	New Microbes New Infect	10.1016/j.nmni.2017.12.009	2018
	MAB_2355c Confers Macrolide Resistance in Mycobacterium abscessus by Ribosome Protection.	Guo Q, Zhang Y, Fan J, Zhang H, Zhang Z, Li B, Chu H.	Antimicrob Agents Chemother	10.1128/aac.00330-21	2021
	Experimental exposure of zebrafish, Danio rerio (Hamilton), to Mycobacterium marinum and Mycobacterium peregrinum reveals the gastrointestinal tract as the primary route of infection: a potential model for environmental mycobacterial infection.	Harriff MJ, Bermudez LE, Kent ML.	J Fish Dis	10.1111/j.1365-2761.2007.00839.x	2007
	Zinc Chelator N,N,N',N'-Tetrakis(2-Pyridylmethyl)Ethylenediamine Reduces the Resistance of Mycobacterium abscessus to Imipenem.	He S, Zou Y, Zhan M, Guo Q, Zhang Y, Zhang Z, Li B, Zhang S, Chu H.	Infect Drug Resist	10.2147/idr.s267552	2020
Pathogenicity	Environmental amoebae and mycobacterial pathogenesis.	Harriff M, Bermudez LE.	Methods Mol Biol	10.1007/978-1-59745-207-6_28	2009
Enzymology	An outbreak of mycobacteriosis in Gouldian finches caused by Mycobacterium peregrinum.	Vitali SD, Eden PA, Payne KL, Vaughan RJ.	Vet Clin North Am Exot Anim Pract	10.1016/j.cvex.2006.05.001	2006
	Evaluation of Media Conductivity and a Combination of Iodine and Sodium Hypochlorite Surface Disinfection on Zebrafish (Danio rerio) Embryo Viability and Morphology.	Mendoza G, Afolalu AA, Lertpiriyapong K, Lipman NS, Lieggi C.	Zebrafish	10.1089/zeb.2022.0028	2022
	Genetic Evolution of Mycobacterium abscessus Conferring Clarithromycin Resistance during Long-Term Antibiotic Therapy.	Li B, Guo Q, Mao Y, Zou Y, Zhang Y, Zhang Z, Chu H.	Can Respir J	10.1155/2020/7623828	2020
	Detection of lfrA and tap efflux pump genes among clinical isolates of non-pigmented rapidly growing mycobacteria.	Esteban J, Martin-de-Hijas NZ, Ortiz A, Kinnari TJ, Bodas Sanchez A, Gadea I, Fernandez-Roblas R.	Int J Antimicrob Agents	10.1016/j.ijantimicag.2009.06.026	2009
	Effects of dietary potassium diformate (KDF) on growth performance, feed conversion and intestinal bacterial community of hybrid tilapia (Oreochromis niloticus [female symbol]x O. aureus [male symbol])	Zhou Z, Liu Y, He S, Shi P, Gao X, Yao B, Ringo E.	Aquaculture	10.1016/j.aquaculture.2009.02.043	2009
Enzymology	Mycobacterium peregrinum infection in a patient with AIDS.	Sakai T, Kobayashi C, Shinohara M.	Intern Med	10.2169/internalmedicine.44.266	2005
Metabolism	In-vitro evaluation of the adhesion to polypropylene sutures of non-pigmented, rapidly growing mycobacteria.	Zamora N, Esteban J, Kinnari TJ, Celdran A, Granizo JJ, Zafra C.	Clin Microbiol Infect	10.1111/j.1469-0691.2007.01769.x	2007
	Impact on Macrolide Resistance of Genetic Diversity of Mycobacterium abscessus Species.	Jong BE, Wu TS, Chen NY, Yang CH, Shu CC, Wang LS, Wu TL, Lu JJ, Chiu CH, Lai HC, Chung WH.	Microbiol Spectr	10.1128/spectrum.02749-22	2022
	In Vitro Susceptibility Testing of Omadacycline against Nontuberculous Mycobacteria.	Brown-Elliott BA, Wallace RJ.	Antimicrob Agents Chemother	10.1128/aac.01947-20	2021
Pathogenicity	In Vitro Susceptibility Testing of Tedizolid against Isolates of Nocardia.	Brown-Elliott BA, Wallace RJ.	Antimicrob Agents Chemother	10.1128/aac.01537-17	2017
Enzymology	Late-onset posttraumatic skin and soft-tissue infections caused by rapid-growing mycobacteria in tsunami survivors.	Appelgren P, Farnebo F, Dotevall L, Studahl M, Jonsson B, Petrini B.	Clin Infect Dis	10.1086/589300	2008
Genetics	Investigating Nontuberculous Mycobacteria Transmission at the Colorado Adult Cystic Fibrosis Program.	Gross JE, Caceres S, Poch K, Hasan NA, Jia F, Epperson LE, Lipner E, Vang C, Honda JR, Strand M, Calado Nogueira de Moura V, Daley CL, Strong M, Davidson RM, Nick JA.	Am J Respir Crit Care Med	10.1164/rccm.202108-1911oc	2022
Phylogeny	Mycobacterium wolinskyi Peritonitis after Peritoneal Catheter Embedment Surgery.	Fujikura H, Kasahara K, Ogawa Y, Hirai N, Yoshii S, Yoshihara S, Ogawa T, Yonekawa S, Imakita N, Nishioka Y, Yoneda T, Yoshida K, Samejima KI, Tanabe K, Saito Y, Yano H, Mikasa K.	Intern Med	10.2169/internalmedicine.8871-17	2017
	Disseminated nontuberculous mycobacterial infection in a child with interferon-gamma receptor 1 deficiency.	Tsolia MN, Chapgier A, Taprantzi P, Servitzoglou M, Tassios I, Spyridis N, Papageorgiou F, Santos OF, Casanova JL, Spyridis P.	Eur J Pediatr	10.1007/s00431-006-0110-7	2006
	Is there a role for tedizolid in the treatment of non-tuberculous mycobacterial disease?	Ruth MM, Koeken VACM, Pennings LJ, Svensson EM, Wertheim HFL, Hoefsloot W, van Ingen J.	J Antimicrob Chemother	10.1093/jac/dkz511	2020
	Pathogenesis of Mycobacterium spp. in zebrafish (Danio rerio) from research facilities.	Watral V, Kent ML.	Comp Biochem Physiol C Toxicol Pharmacol	10.1016/j.cbpc.2006.06.004	2007
Phylogeny	Species Diversity, Molecular Characterization, and Antimicrobial Susceptibility of Opportunistic Actinomycetes Isolated from Immunocompromised and Healthy Patients of Markazi Province of Iran.	Azadi D, Motallebirad T, Ghaffari K, Shokri D, Rezaei F, Rezaei F.	Infect Drug Resist	10.2147/idr.s234292	2020
Pathogenicity	In Vitro Susceptibility Testing of Tedizolid against Nontuberculous Mycobacteria.	Brown-Elliott BA, Wallace RJ.	J Clin Microbiol	10.1128/jcm.00274-17	2017
	Antimicrobial Resistance Spectrum Conferred by pRErm46 of Emerging Macrolide (Multidrug)-Resistant Rhodococcus equi.	Erol E, Scortti M, Fortner J, Patel M, Vazquez-Boland JA.	J Clin Microbiol	10.1128/jcm.01149-21	2021
	Mycobacterium senegalense tissue infection in a child after fish tank exposure.	Talavlikar R, Carson J, Meatherill B, Desai S, Sharma M, Shandro C, Tyrrell GJ, Kuhn S.	Can J Infect Dis Med Microbiol	10.1155/2011/206532	2011
Pathogenicity	In Vitro Susceptibility of Mycobacterium abscessus and Mycobacterium fortuitum Isolates to 30 Antibiotics.	Shen Y, Wang X, Jin J, Wu J, Zhang X, Chen J, Zhang W.	Biomed Res Int	10.1155/2018/4902941	2018
Phylogeny	Nontuberculosis mycobacteria are the major causes of tuberculosis like lesions in cattle slaughtered at Bahir Dar Abattoir, northwestern Ethiopia.	Nuru A, Zewude A, Mohammed T, Wondale B, Teshome L, Getahun M, Mamo G, Medhin G, Pieper R, Ameni G.	BMC Vet Res	10.1186/s12917-017-1168-3	2017
	Contact Effect of a Methylobacterium sp. Extract on Biofilm of a Mycobacterium chimaera Strain Isolated from a 3T Heater-Cooler System.	Pradal I, Esteban J, Mediero A, Garcia-Coca M, Aguilera-Correa JJ.	Antibiotics (Basel)	10.3390/antibiotics9080474	2020
Transcriptome	Development of a DNA microarray chip for the identification of sludge bacteria using an unsequenced random genomic DNA hybridization method.	Kim BC, Park JH, Gu MB.	Environ Sci Technol	10.1021/es035398o	2004
	Antimicrobial Susceptibility and Phylogenetic Relations in a German Cohort Infected with Mycobacterium abscessus.	Wetzstein N, Kohl TA, Schultze TG, Andres S, Bellinghausen C, Hugel C, Kempf VAJ, Lehn A, Hogardt M, Serve H, Vehreschild MJGT, Wolf T, Niemann S, Maurer FP, Wichelhaus TA.	J Clin Microbiol	10.1128/jcm.01813-20	2020
	Susceptibility of rapidly growing mycobacteria isolated from Australian cats to ivermectin, moxidectin, ceftiofur and florfenicol.	Woerde DJ, Martin PA, Govendir M.	J Feline Med Surg	10.1177/1098612x14565497	2015
	Mycobacteriosis in zebrafish (Danio rerio) research facilities.	Kent ML, Whipps CM, Matthews JL, Florio D, Watral V, Bishop-Stewart JK, Poort M, Bermudez L.	Comp Biochem Physiol C Toxicol Pharmacol	10.1016/j.cca.2004.08.005	2004
	Increased incidence of cutaneous nontuberculous mycobacterial infection, 1980 to 2009: a population-based study.	Wentworth AB, Drage LA, Wengenack NL, Wilson JW, Lohse CM.	Mayo Clin Proc	10.1016/j.mayocp.2012.06.029	2013
Pathogenicity	Activity of Antibiotics against Mycobacterium Species Commonly Found in Laboratory Zebrafish.	Chang CT, Whipps CM.	J Aquat Anim Health	10.1080/08997659.2015.1007176	2015
Enzymology	Misidentification of Mycobacterium peregrinum, the causal organism of a case of bacteremia and automatic implantable cardioverter defibrillator-associated infection, due to its unusual acid-fast staining characteristics.	Short WR, Emery C, Bhandary M, O'Donnell JA.	J Clin Microbiol	10.1128/jcm.43.4.2015-2017.2005	2005
	A novel class of antimicrobial drugs selectively targets a Mycobacterium tuberculosis PE-PGRS protein.	Seo H, Kim S, Mahmud HA, Islam MI, Yoon Y, Cho HD, Nam KW, Choi J, Gil YS, Lee BE, Song HY.	PLoS Biol	10.1371/journal.pbio.3001648	2022
Pathogenicity	Evaluating the effectiveness of common disinfectants at preventing the propagation of Mycobacterium spp. isolated from zebrafish.	Chang CT, Colicino EG, DiPaola EJ, Al-Hasnawi HJ, Whipps CM.	Comp Biochem Physiol C Toxicol Pharmacol	10.1016/j.cbpc.2015.09.008	2015
	Prevalence of nontuberculous mycobacteria and high efficacy of d-cycloserine and its synergistic effect with clarithromycin against Mycobacterium fortuitum and Mycobacterium abscessus.	Khosravi AD, Mirsaeidi M, Farahani A, Tabandeh MR, Mohajeri P, Shoja S, Hoseini Lar KhosroShahi SR.	Infect Drug Resist	10.2147/idr.s187554	2018
	Mycobacterium Biofilms.	Esteban J, Garcia-Coca M.	Front Microbiol	10.3389/fmicb.2017.02651	2017
	CFTR Depletion Confers Hypersusceptibility to Mycobacterium fortuitum in a Zebrafish Model.	Johansen MD, Kremer L.	Front Cell Infect Microbiol	10.3389/fcimb.2020.00357	2020
Phylogeny	Rapidly growing nontuberculous mycobacteria cultured from home tap and shower water.	van Ingen J, Blaak H, de Beer J, de Roda Husman AM, van Soolingen D.	Appl Environ Microbiol	10.1128/aem.00843-10	2010
	Genetic characterization of Mycobacterium tuberculosis complex isolates circulating in Abuja, Nigeria.	Molina-Moya B, Abdurrahman ST, Madukaji LI, Gomgnimbou MK, Spinasse L, Gomes-Fernandes M, Gomes HM, Kacimi S, Dacombe R, Bimba JS, Lawson L, Sola C, Cuevas LE, Dominguez J.	Infect Drug Resist	10.2147/idr.s166986	2018
Pathogenicity	Antimicrobial susceptibility testing of rapidly growing mycobacteria isolated in Japan.	Hatakeyama S, Ohama Y, Okazaki M, Nukui Y, Moriya K.	BMC Infect Dis	10.1186/s12879-017-2298-8	2017
Phylogeny	Simple and rapid identification of different species of Mycobacteria by PCR.	Sechi LA, Dupre I, Sanguinetti M, Fadda G, Zanetti S.	Mol Cell Probes	10.1006/mcpr.1999.0225	1999
	Three-Dimensional Screen: A Comprehensive Approach to the Health Monitoring of Zebrafish.	Mocho JP.	Zebrafish	10.1089/zeb.2015.1200	2016
Pathogenicity	Impact of Pronase, Sodium Thiosulfate, and Methylene Blue Combinations on Development and Survival of Sodium Hypochlorite Surface-Disinfected Zebrafish (Danio rerio) Embryos.	Peneyra SM, Lerpiriyapong K, Riedel ER, Lipman NS, Lieggi C.	Zebrafish	10.1089/zeb.2020.1917	2020
Phylogeny	Mycobacterium and Aerobic Actinomycete Culture: Are Two Medium Types and Extended Incubation Times Necessary?	Simner PJ, Doerr KA, Steinmetz LK, Wengenack NL.	J Clin Microbiol	10.1128/jcm.02838-15	2016
Enzymology	Isolation of mycobacteria from clinical samples collected in the United States from 2004 to 2011.	Thacker TC, Robbe-Austerman S, Harris B, Van Palmer M, Waters WR.	BMC Vet Res	10.1186/1746-6148-9-100	2013
Phylogeny	Differentiation of Mycobacterium senegalense from related non-chromogenic mycobacteria using pyrolysis mass spectrometry.	Magee JG, Goodfellow M, Sisson PR, Freeman R, Lightfoot NF.	Zentralbl Bakteriol	10.1016/s0934-8840(97)80035-7	1997
	Specific Proteins in Nontuberculous Mycobacteria: New Potential Tools.	Orduna P, Castillo-Rodal AI, Mercado ME, Ponce de Leon S, Lopez-Vidal Y.	Biomed Res Int	10.1155/2015/964178	2015
Pathogenicity	Utility of sequencing the erm(41) gene in isolates of Mycobacterium abscessus subsp. abscessus with low and intermediate clarithromycin MICs.	Brown-Elliott BA, Vasireddy S, Vasireddy R, Iakhiaeva E, Howard ST, Nash K, Parodi N, Strong A, Gee M, Smith T, Wallace RJ.	J Clin Microbiol	10.1128/jcm.02950-14	2015
	Deep amplicon sequencing for culture-free prediction of susceptibility or resistance to 13 anti-tuberculous drugs.	Jouet A, Gaudin C, Badalato N, Allix-Beguec C, Duthoy S, Ferre A, Diels M, Laurent Y, Contreras S, Feuerriegel S, Niemann S, Andre E, Kaswa MK, Tagliani E, Cabibbe A, Mathys V, Cirillo D, de Jong BC, Rigouts L, Supply P.	Eur Respir J	10.1183/13993003.02338-2020	2021
Pathogenicity	Antimicrobial susceptibility of standard strains of nontuberculous mycobacteria by microplate Alamar Blue assay.	Li G, Lian LL, Wan L, Zhang J, Zhao X, Jiang Y, Zhao LL, Liu H, Wan K.	PLoS One	10.1371/journal.pone.0084065	2013
	Diversity, Novelty, and Antimicrobial Activity of Endophytic Actinobacteria From Mangrove Plants in Beilun Estuary National Nature Reserve of Guangxi, China.	Jiang ZK, Tuo L, Huang DL, Osterman IA, Tyurin AP, Liu SW, Lukyanov DA, Sergiev PV, Dontsova OA, Korshun VA, Li FN, Sun CH.	Front Microbiol	10.3389/fmicb.2018.00868	2018
Phylogeny	Non-tuberculous Mycobacterium species causing mycobacteriosis in farmed aquatic animals of South Africa.	Gcebe N, Michel AL, Hlokwe TM.	BMC Microbiol	10.1186/s12866-018-1177-9	2018
	Structures of the glycolipid antigens of members of the third biovariant complex of Mycobacterium fortuitum.	Laneelle MA, Silve G, Lopez Marin LM, Daffe M.	Eur J Biochem	10.1111/j.1432-1033.1996.0270q.x	1996
Pathogenicity	In vitro antimicrobial susceptibility of Mycobacterium abscessus in Korea.	Park S, Kim S, Park EM, Kim H, Kwon OJ, Chang CL, Lew WJ, Park YK, Koh WJ.	J Korean Med Sci	10.3346/jkms.2008.23.1.49	2008
Pathogenicity	Antibiotic treatment of zebrafish mycobacteriosis: tolerance and efficacy of treatments with tigecycline and clarithromycin.	Chang CT, Doerr KM, Whipps CM.	J Fish Dis	10.1111/jfd.12619	2017
Enzymology	Cooccurrence of free-living amoebae and nontuberculous Mycobacteria in hospital water networks, and preferential growth of Mycobacterium avium in Acanthamoeba lenticulata.	Ovrutsky AR, Chan ED, Kartalija M, Bai X, Jackson M, Gibbs S, Falkinham JO, Iseman MD, Reynolds PR, McDonnell G, Thomas V.	Appl Environ Microbiol	10.1128/aem.03823-12	2013
	The Banana Root Endophytome: Differences between Mother Plants and Suckers and Evaluation of Selected Bacteria to Control Fusarium oxysporum f.sp. cubense.	Gomez-Lama Cabanas C, Fernandez-Gonzalez AJ, Cardoni M, Valverde-Corredor A, Lopez-Cepero J, Fernandez-Lopez M, Mercado-Blanco J.	J Fungi (Basel)	10.3390/jof7030194	2021
Enzymology	Point-of-care system for detection of Mycobacterium tuberculosis and rifampin resistance in sputum samples.	Castan P, de Pablo A, Fernandez-Romero N, Rubio JM, Cobb BD, Mingorance J, Toro C.	J Clin Microbiol	10.1128/jcm.02209-13	2014
Phylogeny	Whole-Genome Sequencing and Comparative Analysis of Mycobacterium brisbanense Reveals a Possible Soil Origin and Capability in Fertiliser Synthesis.	Wee WY, Tan TK, Jakubovics NS, Choo SW.	PLoS One	10.1371/journal.pone.0152682	2016
Metabolism	Mycobacterium tuberculosis Rv0366c-Rv0367c encodes a non-canonical PezAT-like toxin-antitoxin pair.	Tandon H, Sharma A, Sandhya S, Srinivasan N, Singh R, Singh R.	Sci Rep	10.1038/s41598-018-37473-y	2019
Phylogeny	Thin-layer chromatographic analysis of glycolipids and mycolic acids from Mycobacterium farcinogenes, Mycobacterium senegalense and related taxa.	Hamid ME, Minnikin DE, Goodfellow M, Ridell M.	Zentralbl Bakteriol	10.1016/s0934-8840(11)80368-3	1993
Enzymology	Distribution of a novel mycolic acid in species of the genus Mycobacterium.	Luquin M, Laneelle MA, Ausina V, Garcia Barcelo M, Belda F, Alonso C, Prats G.	Int J Syst Bacteriol	10.1099/00207713-41-3-390	1991
Phylogeny	Polyphasic characterization reveals that the human pathogen Mycobacterium peregrinum type II belongs to the bovine pathogen species Mycobacterium senegalense.	Wallace RJ, Brown-Elliott BA, Brown J, Steigerwalt AG, Hall L, Woods G, Cloud J, Mann L, Wilson R, Crist C, Jost KC, Byrer DE, Tang J, Cooper J, Stamenova E, Campbell B, Wolfe J, Turenne C.	J Clin Microbiol	10.1128/jcm.43.12.5925-5935.2005	2005
Metabolism	A Nonribosomal Peptide Synthase Gene Driving Virulence in Mycobacterium tuberculosis.	Bhatt K, Machado H, Osorio NS, Sousa J, Cardoso F, Magalhaes C, Chen B, Chen M, Kim J, Singh A, Ferreira CM, Castro AG, Torrado E, Jacobs WR, Bhatt A, Saraiva M.	mSphere	10.1128/msphere.00352-18	2018
	Implementation of a Zebrafish Health Program in a Research Facility: A 4-Year Retrospective Study.	Borges AC, Pereira N, Franco M, Vale L, Pereira M, Cunha MV, Amaro A, Albuquerque T, Rebelo M.	Zebrafish	10.1089/zeb.2015.1230	2016
	Eubiotic effect of a dietary acidifier (potassium diformate) on the health status of cultured Oreochromis niloticus.	Abu Elala NM, Ragaa NM.	J Adv Res	10.1016/j.jare.2014.02.008	2015
Phylogeny	Recovery of Previously Uncultured Bacterial Genera from Three Mediterranean Sponges.	Versluis D, McPherson K, van Passel MWJ, Smidt H, Sipkema D.	Mar Biotechnol (NY)	10.1007/s10126-017-9766-4	2017
	Risk Factors and Outcomes of Nontuberculous Mycobacterial Disease among Rheumatoid Arthritis Patients: A Case-Control study in a TB Endemic Area.	Liao TL, Lin CF, Chen YM, Liu HJ, Chen DY.	Sci Rep	10.1038/srep29443	2016
	Mycolic acid patterns of representative strains of Mycobacterium fortuitum, 'Myobacterium peregrinum' and Mycobacterium smegmatis.	Minnikin DE, Minnikin SM, Hutchinson IG, Goodfellow M, Grange JM.	J Gen Microbiol	10.1099/00221287-130-2-363	1984
Phylogeny	Diversity, community composition, and dynamics of nonpigmented and late-pigmenting rapidly growing mycobacteria in an urban tap water production and distribution system.	Dubrou S, Konjek J, Macheras E, Welte B, Guidicelli L, Chignon E, Joyeux M, Gaillard JL, Heym B, Tully T, Sapriel G.	Appl Environ Microbiol	10.1128/aem.00900-13	2013
	Biofilm development by potentially pathogenic non-pigmented rapidly growing mycobacteria.	Esteban J, Martin-de-Hijas NZ, Kinnari TJ, Ayala G, Fernandez-Roblas R, Gadea I.	BMC Microbiol	10.1186/1471-2180-8-184	2008
Phylogeny	hsp65 sequencing for identification of rapidly growing mycobacteria.	Ringuet H, Akoua-Koffi C, Honore S, Varnerot A, Vincent V, Berche P, Gaillard JL, Pierre-Audigier C.	J Clin Microbiol	10.1128/jcm.37.3.852-857.1999	1999
Enzymology	Pyrosequencing for rapid detection of extensively drug-resistant Mycobacterium tuberculosis in clinical isolates and clinical specimens.	Lin SY, Rodwell TC, Victor TC, Rider EC, Pham L, Catanzaro A, Desmond EP.	J Clin Microbiol	10.1128/jcm.01821-13	2014
	Species of environmental mycobacteria differ in their abilities to grow in human, mouse, and carp macrophages and with regard to the presence of mycobacterial virulence genes, as observed by DNA microarray hybridization.	Harriff MJ, Wu M, Kent ML, Bermudez LE.	Appl Environ Microbiol	10.1128/aem.01480-07	2008
Metabolism	The Hippo Pathway Regulates Caveolae Expression and Mediates Flow Response via Caveolae.	Rausch V, Bostrom JR, Park J, Bravo IR, Feng Y, Hay DC, Link BA, Hansen CG.	Curr Biol	10.1016/j.cub.2018.11.066	2019
Genetics	Characterization of mycobacteria and mycobacteriophages isolated from compost at the São Paulo Zoo Park Foundation in Brazil and creation of the new mycobacteriophage Cluster U.	Lima-Junior JD, Viana-Niero C, Conde Oliveira DV, Machado GE, Rabello MC, Martins-Junior J, Martins LF, Digiampietri LA, da Silva AM, Setubal JC, Russell DA, Jacobs-Sera D, Pope WH, Hatfull GF, Leao SC.	BMC Microbiol	10.1186/s12866-016-0734-3	2016
Phylogeny	Clinical significance of Mycobacterium asiaticum isolates in Queensland, Australia.	Grech M, Carter R, Thomson R.	J Clin Microbiol	10.1128/jcm.01602-09	2010
Phylogeny	Evaluation of the new GenoType Mycobacterium assay for identification of mycobacterial species.	Russo C, Tortoli E, Menichella D.	J Clin Microbiol	10.1128/jcm.44.2.334-339.2006	2006
Phenotype	Mycobacterium Avium subsp. paratuberculosis isolates induce in vitro granuloma formation and show successful survival phenotype, common anti-inflammatory and antiapoptotic responses within ovine macrophages regardless of genotype or host of origin.	Abendano N, Tyukalova L, Barandika JF, Balseiro A, Sevilla IA, Garrido JM, Juste RA, Alonso-Hearn M.	PLoS One	10.1371/journal.pone.0104238	2014
Enzymology	Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases.	Roth A, Reischl U, Streubel A, Naumann L, Kroppenstedt RM, Habicht M, Fischer M, Mauch H.	J Clin Microbiol	10.1128/jcm.38.3.1094-1104.2000	2000
	Surface spreading motility shown by a group of phylogenetically related, rapidly growing pigmented mycobacteria suggests that motility is a common property of mycobacterial species but is restricted to smooth colonies.	Agusti G, Astola O, Rodriguez-Guell E, Julian E, Luquin M.	J Bacteriol	10.1128/jb.00572-08	2008
Pathogenicity	Molecular evaluation of antibiotic susceptibility: Tropheryma whipplei paradigm.	Masselot F, Boulos A, Maurin M, Rolain JM, Raoult D.	Antimicrob Agents Chemother	10.1128/aac.47.5.1658-1664.2003	2003
	[Sources and fate of pathogenic microorganisms in aquatic environments].	Baudart J, Paniel N.	Rev Francoph Lab	10.1016/s1773-035x(14)72362-7	2014
Phylogeny	Use of the INNO-LiPA-MYCOBACTERIA assay (version 2) for identification of Mycobacterium avium-Mycobacterium intracellulare-Mycobacterium scrofulaceum complex isolates.	Lebrun L, Weill FX, Lafendi L, Houriez F, Casanova F, Gutierrez MC, Ingrand D, Lagrange P, Vincent V, Herrmann JL.	J Clin Microbiol	10.1128/jcm.43.6.2567-2574.2005	2005
Phylogeny	Heterogeneity of RNA polymerase gene (rpoB) sequences of Mycobacterium gordonae clinical isolates identified with a DNA probe kit and by conventional methods.	Itoh S, Kazumi Y, Abe C, Takahashi M.	J Clin Microbiol	10.1128/jcm.41.4.1656-1663.2003	2003
Phylogeny	Granulomatous skin lesions in moray eels caused by a novel Mycobacterium species related to Mycobacterium triplex.	Herbst LH, Costa SF, Weiss LM, Johnson LK, Bartell J, Davis R, Walsh M, Levi M.	Infect Immun	10.1128/iai.69.7.4639-4646.2001	2001
Pathogenicity	Mutations in the rpoB gene of rifampin-resistant Mycobacterium tuberculosis isolates in Spain and their rapid detection by PCR-enzyme-linked immunosorbent assay.	Garcia L, Alonso-Sanz M, Rebollo MJ, Tercero JC, Chaves F.	J Clin Microbiol	10.1128/jcm.39.5.1813-1818.2001	2001
Enzymology	Clinical application of PCR-restriction enzyme pattern analysis for rapid identification of aerobic actinomycete isolates.	Wilson RW, Steingrube VA, Brown BA, Wallace RJ.	J Clin Microbiol	10.1128/jcm.36.1.148-152.1998	1998
Phylogeny	Characterization of a trinucleotide repeat sequence (CGG)5 and potential use in restriction fragment length polymorphism typing of Mycobacterium tuberculosis.	Otsuka Y, Parniewski P, Zwolska Z, Kai M, Fujino T, Kirikae F, Toyota E, Kudo K, Kuratsuji T, Kirikae T.	J Clin Microbiol	10.1128/jcm.42.8.3538-3548.2004	2004
Enzymology	Sequence-based identification of aerobic actinomycetes.	Patel JB, Wallace RJ, Brown-Elliott BA, Taylor T, Imperatrice C, Leonard DG, Wilson RW, Mann L, Jost KC, Nachamkin I.	J Clin Microbiol	10.1128/jcm.42.6.2530-2540.2004	2004
	Characterization of an rRNA operon (rrnB) of Mycobacterium fortuitum and other mycobacterial species: implications for the classification of mycobacteria.	Menendez MC, Garcia MJ, Navarro MC, Gonzalez-y-Merchand JA, Rivera-Gutierrez S, Garcia-Sanchez L, Cox RA.	J Bacteriol	10.1128/jb.184.4.1078-1088.2002	2002
Pathogenicity	Multisite reproducibility of results obtained by the broth microdilution method for susceptibility testing of Mycobacterium abscessus, Mycobacterium chelonae, and Mycobacterium fortuitum.	Woods GL, Bergmann JS, Witebsky FG, Fahle GA, Wanger A, Boulet B, Plaunt M, Brown BA, Wallace RJ.	J Clin Microbiol	10.1128/jcm.37.6.1676-1682.1999	1999
Phylogeny	Serological and bacteriological investigation of Mycobacterium ranae (fortuitum).	Stanford JL, Gunthorpe WJ.	J Bacteriol	10.1128/jb.98.2.375-383.1969	1969
	A controlled trial of anti-tuberculosis chemotherapy in the early complicated pneumoconiosis of coalworkers.	Ball JD, Berry G, Clarke WG, Gilson JC, Thomas J.	Thorax	10.1136/thx.24.4.399	1969
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Enzymology	Multicenter evaluation of mycobacteria identification by PCR restriction enzyme analysis in laboratories from Latin America and the Caribbean.	Leao SC, Bernardelli A, Cataldi A, Zumarraga M, Robledo J, Realpe T, Mejia GI, da Silva Telles MA, Chimara E, Velazco M, Fernandez J, Rodrigues PA, Guerrero MI, Leon CI, Porras TB, Rastogi N, Goh KS, Suffys P, da Silva Rocha A, dos Santos Netto D, Ritacco V, Lopez B, Barrera L, Palomino JC, Martin A, Portaels F	J Microbiol Methods	10.1016/j.mimet.2004.11.015	2004
Phylogeny	Taxonomic variation in the Mycobacterium fortuitum third biovariant complex: description of Mycobacterium boenickei sp. nov., Mycobacterium houstonense sp. nov., Mycobacterium neworleansense sp. nov. and Mycobacterium brisbanense sp. nov. and recognition of Mycobacterium porcinum from human clinical isolates.	Schinsky MF, Morey RE, Steigerwalt AG, Douglas MP, Wilson RW, Floyd MM, Butler WR, Daneshvar MI, Brown-Elliott BA, Wallace RJ, McNeil MM, Brenner DJ, Brown JM.	Int J Syst Evol Microbiol	10.1099/ijs.0.02743-0	2004
Phylogeny	Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to species status: Mycobacterium abscessus comb. nov.	Kusunoki S, Ezaki T	Int J Syst Bacteriol	10.1099/00207713-42-2-240	1992

References

#10803	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43271
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36366	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#121676	Collection of Institut Pasteur ; Curators of the CIP; CIP 105382
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium peregrinum (DSM 43271, ATCC 14467, ATCC 23023)

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