Name: Mycobacterium gordonae W-1609
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8268

Type strain:

Species: Mycobacterium gordonae

Strain Designation: W-1609, P-15, 14 021 0001

Culture col. no.: DSM 44160, ATCC 14470, JCM 6382, NCTC 10267, TMC 1324, CCUG 21801, CCUG 21811, CIP 104529, KCTC 9513

Strain history: CIP <- 1995, V. Vincent, Inst. Pasteur, Paris, France: strain 14 021 0001 <- ATCC <- L.F. Bojalil <- E. Runyon: strain P-15 <- L. Wayne: strain W-1609

NCBI tax ID(s): 1778 (species)

SI-ID 92815

ATCC 14470, CCUG 21801, CCUG 21811, ATCC 23406, CIP 104529, NCTC 10267, DSM 44160, JCM 6382, KCTC 3036, KCTC 9513, CNCTC 7275

Other strains from Mycobacterium gordonae

Section

Mycobacterium gordonae W-1609 is a facultative anaerobe, mesophilic, rod-shaped human pathogen that was isolated from gastric lavage.

rod-shaped
facultative anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium gordonae**
	Full Scientific Name (LPSN)	Mycobacterium gordonae Bojalil et al. 1962 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #119708]	Cell shape	rod-shaped

Multimedia content

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Intellectual property rights:

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Caption:

Medium 645 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

MEDIUM 55 - for Mycobacterium

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Culture medium growth

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Culture medium

CIP Medium 55

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #11558]		growth	37 °C
[Ref.: #39031]		growth	30 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #119708]		growth	22-37 °C
[Ref.: #119708]	no	growth	10 °C
[Ref.: #119708]	no	growth	45 °C

[Ref.: #11558]	Temperature range	mesophilic
[Ref.: #39031]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #119708]	Temperature range	psychrophilic
[Ref.: #119708]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119708]

Oxygen tolerance

facultative anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #119708]	nitrate ChEBI	+	reduction
[Ref.: #119708]	nitrate ChEBI	+	respiration
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #119708]	nitrite ChEBI	-	reduction
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119708]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119708]	amylase	-
[Ref.: #119708]	beta-galactosidase	+	3.2.1.23
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #119708]	caseinase	-	3.4.21.50
[Ref.: #119708]	catalase	+	1.11.1.6
[Ref.: #119708]	DNase	-
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119708]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #119708]	gelatinase	-
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #119708]	lecithinase	-
[Ref.: #119708]	lipase	-
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #119708]	oxidase	-
[Ref.: #119708]	protease	-
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #119708]	tween esterase	-
[Ref.: #119708]	urease	-	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #11558]	4244	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #11558]	14140	-	-	+/-	+	+/-	+/-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-
[Ref.: #119708]	8019	-	+	+	+	+	+	+	+	+	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11558]	Sample type/isolated from	gastric lavage

[Ref.: #67770]	Sample type/isolated from	Human gastric lavage

[Ref.: #119708]	Sample type/isolated from	Human, Gastric lavage
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Gastrointestinal tract

#Stomach

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11558]	Pathogenicity (human)	yes, in single cases
[Ref.: #11558]	Pathogenicity (animal)	yes, in single cases
[Ref.: #11558]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119708]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Mycobacterium gordonae strain ATCC14470 16S ribosomal RNA (rrs) gene, partial sequence	AF059850	171	ENA	1778 tax ID	*
[Ref.: #20218]	Mycobacterium gordonae strain ATCC 14470 16S ribosomal RNA gene, partial sequence	JN899579	1472	ENA	1778 tax ID	*
[Ref.: #20218]	Mycobacterium gordonae 16S ribosomal RNA (16S rRNA) gene and 23S ribosomal RNA (23S rRNA) gene	L42258	421	ENA	1778 tax ID	*
[Ref.: #20218]	M.gordonae 16S ribosomal RNA	M29563	1373	ENA	1778 tax ID	*
[Ref.: #20218]	M.gordonae 16S ribosomal RNA gene	M59273	145	ENA	1778 tax ID	*
[Ref.: #20218]	Mycobacterium gordonae 16S rRNA gene	X52923	1461	ENA	1778 tax ID	*
[Ref.: #20218]	Mycobacterium gordonae strain CIP 104529 16S ribosomal RNA gene, partial sequence	AF547931	552	ENA	1778 tax ID	*
[Ref.: #20218]	Mycobacterium gordonae 16S rRNA gene	AJ536042	1072	ENA	1778 tax ID	*
[Ref.: #20218]	Mycobacterium gordonae DNA for 16S rRNA, internal transcribed spacer, 23S rRNA	AB026692	425	ENA	1778 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycobacterium gordonae DSM 44160	GCA_002101675	contig	GenBank	1778 tax ID
[Ref.: #66792]	Mycobacterium gordonae strain DSM 44160	1778.15	wgs	PATRIC	1778 tax ID	*
[Ref.: #66792]	Mycobacterium gordonae DSM 44160	GCA_025821905	scaffold	GenBank	1778 tax ID	*

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GC-content

66.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium gordonae strain DSM 44160 PATRIC: 1778.15
[Ref.: #69480]	motile	no	93.849	no
[Ref.: #69480]	gram-positive	yes	86.5	no
[Ref.: #69480]	anaerobic	no	98.556	no
[Ref.: #69480]	aerobic	yes	89.726	no
[Ref.: #69480]	halophile	no	94.545	no
[Ref.: #69480]	spore-forming	no	81.949	no
[Ref.: #69480]	thermophile	no	99.503	yes
[Ref.: #69480]	glucose-util	yes	65.962	no
[Ref.: #69480]	flagellated	no	98.604	no
[Ref.: #69480]	glucose-ferment	no	92.634	no

Availability in culture collections External links

[Ref.: #11558]

Culture collection no.

DSM 44160, ATCC 14470, JCM 6382, NCTC 10267, TMC 1324, CCUG 21801, CCUG 21811, CIP 104529, KCTC 9513

[Ref.: #77670]

SI-ID 92815

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium vicinigordonae sp. nov., a slow-growing scotochromogenic species isolated from sputum.	Liu G, Yu X, Luo J, Hu Y, Dong L, Jiang G, Huo F, Wang F, Liang Q, Huang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004796	2021	*
Phylogeny	Mycobacterium shinjukuense sp. nov., a slowly growing, non-chromogenic species isolated from human clinical specimens.	Saito H, Iwamoto T, Ohkusu K, Otsuka Y, Akiyama Y, Sato S, Taguchi O, Sueyasu Y, Kawabe Y, Fujimoto H, Ezaki T, Butler R	Int J Syst Evol Microbiol	10.1099/ijs.0.025478-0	2010	*
Phylogeny	Heterogeneity of RNA polymerase gene (rpoB) sequences of Mycobacterium gordonae clinical isolates identified with a DNA probe kit and by conventional methods.	Itoh S, Kazumi Y, Abe C, Takahashi M	J Clin Microbiol	10.1128/JCM.41.4.1656-1663.2003	2003	*
Metabolism	[Studies on the lipids of "Mycobacterium gordonae" in comparison with those of "M. leprae" and of some other scotochromogenic mycobacteria (author's transl)].	Daffe M, Laneelle MA, Prome D, Asselineau C	Ann Microbiol (Paris)		1981	*

References

#11558

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44160

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39031 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77670

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92815.1 )

#119708 Collection of Institut Pasteur ; Curators of the CIP; CIP 104529
* These data were automatically processed and therefore are not curated

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Mycobacterium gordonae strain DSM 44160

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