Psychrobacter pulmonis (DSM 16214, CCUG 46240, CECT 5989)

Name: Psychrobacter pulmonis (DSM 16214, CCUG 46240, CECT 5989)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8192

Type strain

Strain Designation S-606

Culture col. no. DSM 16214 CCUG 46240 CECT 5989 CIP 107927 CCM 7211 1 more

NCBI tax ID(s) 228654

Special Collections DSMZ CCUG CIP

History <- CCUG <- CECT <- J. F. Fernández-Garayzábal, Univ. Complutense, Madrid, Spain <- M. V. Latre, Univ. Zaragoza, Spain; S-606 CIP <- 2003, CCUG <- 2002, CECT <- JF Fernandez-Garayzabal, Madrid, Spain: strain S-606

Links

Psychrobacter pulmonis S-606 is an aerobe, Gram-negative, oval-shaped human pathogen that was isolated from 20-day-old lamb .

Gram-negative oval-shaped aerobe human pathogen 16S sequence Bacteria

Name and taxonomic classification

SI-ID 97532

CECT 5989,CCUG 46240,KCTC 12112,CIP 107927,CCM 7211,DSM 16214

@ref 20215

Last LPSN update 2026-02-09 11:19:38

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Psychrobacter

Species Psychrobacter pulmonis

Full scientific name Psychrobacter pulmonis Vela et al. 2003

BacDive ID	Other strains from **Psychrobacter pulmonis** (2)	Type strain
8193	P. pulmonis ES2-W5a2, DSM 30630
173511	P. pulmonis Sophila, CIP 110959, CIP 200458

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
122048	negative	oval-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6330	COLUMBIA BLOOD AGAR (DSMZ Medium 429)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
6330	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
34297	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
122048	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6330	positive	growth	37
34297	positive	growth	37
57122	positive	growth	37
122048	positive	growth	5-37
122048	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
57122	aerobe
122048	obligate aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
122048	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
122048	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
122048	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
122048	17632 ChEBI	nitrate	+	reduction
122048	17632 ChEBI	nitrate	-	respiration
122048	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
122048	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122048	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
122048	15688 ChEBI	acetoin	+
122048	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122048	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122048	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
122048	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122048	caseinase	-	3.4.21.50
122048	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
122048	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122048	gamma-glutamyltransferase	+	2.3.2.2
122048	gelatinase	-
122048	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
122048	lipase	+
68382	lipase (C 14)	+		from API zym
122048	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122048	ornithine decarboxylase	-	4.1.1.17
122048	oxidase	+
122048	phenylalanine ammonia-lyase	+	4.3.1.24
122048	protease	-
68382	trypsin	-	3.4.21.4	from API zym
122048	tryptophan deaminase	+
122048	tween esterase	-
122048	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122048	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122048	not determinedn.d.	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	+/-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Caprinae (Sheep/Goat)

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
6330	20-day-old lamb (congestive lungs)		Zaragoza	Spain	ESP	Europe
57122	Congestive lungs of 20-days-old lamb,sudden death	2001	Zaragoza	Spain	ESP	Europe
122048	Lambs, lungs		Zaragoza	Spain	ESP	Europe	2001

Taxonmaps

69479

Global distribution of 16S sequence HQ698579 (>99% sequence identity) for Psychrobacter from Microbeatlas

Aquatic Samples	1079
Soil Samples	382
Animal Samples	1459
Plant Samples	79
Total Samples	2999

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
6330			2	Risk group (German classification) According to TRBA 466
122048			1	Risk group (French classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Psychrobacter pulmonis strain CCUG 46240 16S ribosomal RNA gene, partial sequence	HQ698579	1469		228654
6330	Psychrobacter pulmonis 16S rRNA gene, type strain CECT 5989T	AJ437696	1363		228654

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Effects of ciprofloxacin on bacterial abundance and enrichments in samples taken from the sea surface microlayer and underlying waters in the southern North Sea.	Adenaya A, Zumbika F, Rios-Quintero R, Lara-Martin PA, Wurl O, Konneke M, Ribas-Ribas M, Hamprecht A, Brinkhoff T.	Front Microbiol	10.3389/fmicb.2025.1624041	2025
Enzymology	Bacterial diversity and biopotentials of Hamtah glacier cryoconites, Himalaya.	Singh P, Singh SM, Segawa T, Singh PK.	Front Microbiol	10.3389/fmicb.2024.1362678	2024
Phylogeny	A primary assessment of the endophytic bacterial community in a xerophilous moss (Grimmia montana) using molecular method and cultivated isolates.	Liu XL, Liu SL, Liu M, Kong BH, Liu L, Li YH.	Braz J Microbiol	10.1590/s1517-83822014000100022	2014
Pathogenicity	AhaP, A Quorum Quenching Acylase from Psychrobacter sp. M9-54-1 That Attenuates Pseudomonas aeruginosa and Vibrio coralliilyticus Virulence.	Reina JC, Romero M, Salto R, Camara M, Llamas I	Mar Drugs	10.3390/md19010016	2021
Phylogeny	Psychrobacter fulvigenes sp. nov., isolated from a marine crustacean from the Sea of Japan.	Romanenko LA, Tanaka N, Frolova GM, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.007195-0	2009
Phylogeny	Psychrobacter pulmonis sp. nov., isolated from the lungs of lambs.	Vela AI, Collins MD, Latre MV, Mateos A, Moreno MA, Hutson R, Dominguez L, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.02413-0	2003

References

#6330	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16214
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34297	; Curators of the CIP;
#57122	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46240
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122048	Collection of Institut Pasteur ; Curators of the CIP; CIP 107927
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Psychrobacter pulmonis (DSM 16214, CCUG 46240, CECT 5989)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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