Name: Psychrobacter phenylpyruvicus CCUG 351
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8177

Type strain:

Species: Psychrobacter phenylpyruvicus

Culture col. no.: CCUG 351, CIP 82.27, LMG 5372, CCM 5954, DSM 7000, ATCC 23333, NCTC 10526, JCM 20444, ACAM 535, ACM 886, CDC 2863, IAM 12282, NBRC 102152

Strain history: CIP <- 1982, NCTC <- K. Boevre, Oslo, Norway: strain 2863, Moraxella phenylpyruvica <- E. King, CDC

NCBI tax ID(s): 1123034 (strain), 29432 (species)

SI-ID 3613

LMG 5372, ACM 886, ATCC 23333, CCM 5954, CCUG 351, IAM 12282, NCTC 10526, DSM 7000, CIP 82.27, BCRC 11231, CCRC 11231, NBRC 102152, CNCTC 5749, JCM 20444

Other strains from Psychrobacter phenylpyruvicus

Section

Psychrobacter phenylpyruvicus CCUG 351 is a mesophilic bacterium that was isolated from blood.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Species	**Psychrobacter phenylpyruvicus**
	Full Scientific Name (LPSN)	Psychrobacter phenylpyruvicus (Bøvre and Henriksen 1967) Bowman et al. 1996

Synonym

Moraxella phenylpyruvica

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #69480]	Motility	no Confidence in %97.026

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2943]

Culture medium

COLUMBIA BLOOD AGAR (DSMZ Medium 429)

[Ref.: #2943]

Culture medium growth

[Ref.: #2943]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2943]

Culture medium composition

expand / minimize

[Ref.: #41741]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #41741]

Culture medium growth

[Ref.: #41741]

Culture medium composition

expand / minimize

[Ref.: #121798]

Culture medium

CIP Medium 6

[Ref.: #121798]

Culture medium growth

[Ref.: #121798]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2943]	growth	28 °C
[Ref.: #41741]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #2943]	Temperature range	mesophilic
[Ref.: #41741]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68377]	D-fructose ChEBI	-	builds acid from	* from API NH
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68377]	D-glucose ChEBI	-	builds acid from	* from API NH
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68377]	maltose ChEBI	-	builds acid from	* from API NH
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68377]	sucrose ChEBI	-	builds acid from	* from API NH
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE, API NH
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68377]	urea ChEBI	-	hydrolysis	* from API NH
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68377]		indole ChEBI	no	* from API NH, API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH, API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68377]	alkaline phosphatase	-	3.1.3.1	* from API NH, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68377]	beta-galactosidase	-	3.2.1.23	* from API NH, API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68377]	beta-lactamase	-	3.5.2.6	* from API NH
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68377]	gamma-glutamyltransferase	-	2.3.2.2	* from API NH
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68377]	lipase	+		* from API NH
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68377]	proline-arylamidase	-	3.4.11.5	* from API NH
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #44170]	7756	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #44170]	2150	-	-	-	-	-	-	-	+	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #44170]	3359	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #44170]	3924	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2943]	Sample type/isolated from	blood

[Ref.: #44170]	Sample type/isolated from	Human blood

[Ref.: #67770]	Sample type/isolated from	Human blood

[Ref.: #121798]	Sample type/isolated from	Blood
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Blood
#Infection	#Patient	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U46144 (>99% sequence identity) for Psychrobacter from Microbeatlas

Aquatic Samples	272
Soil Samples	183
Animal Samples	656
Plant Samples	37
Total Samples	1148

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2943]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121798]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Psychrobacter phenylpyruvicum ATCC 23333 16S ribosomal RNA gene	U46144	1433	ENA	29432 tax ID	*
[Ref.: #20218]	Psychrobacter phenylpyruvicus gene for 16S rRNA, partial sequence, strain: NBRC 102152	AB681720	1460	ENA	29432 tax ID	*
[Ref.: #20218]	Psychrobacter phenylpyruvicus strain NCTC 10526 16S ribosomal RNA gene, partial sequence	EF012270	689	ENA	29432 tax ID	*
[Ref.: #20218]	M.phenylpyruvica gene for 16S rRNA	X74898	718	ENA	29432 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152	GCA_001591185	contig	GenBank	1123034 tax ID
[Ref.: #67770]	Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152	GCA_000685805	scaffold	GenBank	1123034 tax ID
[Ref.: #67770]	Psychrobacter phenylpyruvicus NCTC10526	GCA_900455955	contig	GenBank	29432 tax ID
[Ref.: #66792]	Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152	1123034.5	wgs	PATRIC	1123034 tax ID	*
[Ref.: #66792]	Psychrobacter phenylpyruvicus strain Psychrobacter phenylpyruvicus ACAM535	29432.6	wgs	PATRIC	29432 tax ID	*
[Ref.: #66792]	Psychrobacter phenylpyruvicus DSM 7000	2563366723	draft	JGI IMG/M	1123034 tax ID	*

[Ref.: #67770]

GC-content

43 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 DSM 7000 NCBI: GCA_000685805.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Psychrobacter phenylpyruvicus DSM 7000 PATRIC: 1123034.3
[Ref.: #69480]	motile	no	91.838	no
[Ref.: #69480]	flagellated	no	92.169	no
[Ref.: #69480]	gram-positive	no	97.922	no
[Ref.: #69480]	anaerobic	no	97.508	no
[Ref.: #69480]	aerobic	yes	84.548	no
[Ref.: #69480]	halophile	yes	66.728	no
[Ref.: #69480]	spore-forming	no	96.239	no
[Ref.: #69480]	glucose-util	no	69.603	no
[Ref.: #69480]	thermophile	no	98.479	yes
[Ref.: #69480]	glucose-ferment	no	93.158	yes

Availability in culture collections External links

[Ref.: #2943]

Culture collection no.

CCUG 351, CIP 82.27, LMG 5372, CCM 5954, DSM 7000, ATCC 23333, NCTC 10526, JCM 20444, ACAM 535, ACM 886, CDC 2863, IAM 12282, NBRC 102152

[Ref.: #77580]

SI-ID 3613

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter pygoscelis sp. nov. isolated from the penguin Pygoscelis papua.	Kampfer P, Glaeser SP, Irgang R, Fernandez-Negrete G, Poblete-Morales M, Fuentes-Messina D, Cortez-San Martin M, Avendano-Herrera R	Int J Syst Evol Microbiol	10.1099/ijsem.0.003739	2020	*
Phylogeny	Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.	Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D	Int J Syst Evol Microbiol	10.1099/ijsem.0.002065	2017	*
Phylogeny	Surgical wound infection associated with Psychrobacter phenylpyruvicus-like organism.	Stepanovic S, Vukovic D, Bedora-Faure M, K'ouas G, Djukic S, Svabic-Vlahovic M, Carlier JP	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2006.08.002	2006	*
Phylogeny	Phylogeny of the family Moraxellaceae by 16S rDNA sequence analysis, with special emphasis on differentiation of Moraxella species.	Pettersson B, Kodjo A, Ronaghi M, Uhlen M, Tonjum T	Int J Syst Bacteriol	10.1099/00207713-48-1-75	1998	*
Pathogenicity	Novel Psychrobacter species from Antarctic ornithogenic soils.	Bowman JP, Cavanagh J, Austin JJ, Sanderson K	Int J Syst Bacteriol	10.1099/00207713-46-4-841	1996	*

References

#2943

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7000

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41741 ; Curators of the CIP;
#44170 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 351

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68377

Automatically annotated from API NH .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77580

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3613.1 )

#121798 Collection of Institut Pasteur ; Curators of the CIP; CIP 82.27
* These data were automatically processed and therefore are not curated

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Search for species Psychrobacter phenylpyruvicus in external resources:
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Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 DSM 7000

Psychrobacter phenylpyruvicus DSM 7000

Change proposal

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