Psychrobacter phenylpyruvicus (CCUG 351, CIP 82.27, LMG 5372)

Name: Psychrobacter phenylpyruvicus (CCUG 351, CIP 82.27, LMG 5372)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8177

Type strain

Culture col. no. CCUG 351 CIP 82.27 LMG 5372 CCM 5954 DSM 7000 8 more

NCBI tax ID(s) 1123034 29432

Special Collections DSMZ CCUG JCM CIP

History <- NCTC <- K. Bovre <- E. O. King, CDC Atlanta IAM 12282 <-- Y. Nishimura <-- ATCC 23333 <-- K. Bøvre and S. D. Henriksen 2863 <-- E. O. King. CIP <- 1982, NCTC <- K. Boevre, Oslo, Norway: strain 2863, Moraxella phenylpyruvica <- E. King, CDC

Links

Psychrobacter phenylpyruvicus CCUG 351 is a mesophilic prokaryote that was isolated from blood.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 3613

LMG 5372,ACM 886,ATCC 23333,CCM 5954,CCUG 351,IAM 12282,NCTC 10526,DSM 7000,CIP 82.27,BCRC 11231,CCRC 11231,NBRC 102152,CNCTC 5749,JCM 20444

@ref 20215

Last LPSN update 2025-12-16 09:48:46

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Psychrobacter

Species Psychrobacter phenylpyruvicus

Full scientific name Psychrobacter phenylpyruvicus (Bøvre and Henriksen 1967) Bowman et al. 1996

Synonyms (1)

Moraxella phenylpyruvica

BacDive ID	Other strains from **Psychrobacter phenylpyruvicus** (23)	Type strain
134788	P. phenylpyruvicus CIP 64.56
134912	P. phenylpyruvicus CIP 102743
135165	P. phenylpyruvicus CIP 57.35, ATCC 17958, NCTC 10752
135670	P. phenylpyruvicus CCUG 9696, CIP 70.43, ATCC 17955
137514	P. phenylpyruvicus CIP 68.17
137616	P. phenylpyruvicus CIP 81.6, ATCC 23335, CCUG 2135
139047	P. phenylpyruvicus CIP 68.16
141473	P. phenylpyruvicus CCUG 2134
141497	P. phenylpyruvicus CCUG 2371
141555	P. phenylpyruvicus CCUG 2978
141557	P. phenylpyruvicus CCUG 2991
141613	P. phenylpyruvicus CCUG 3693
142464	P. phenylpyruvicus CCUG 12625
143145	P. phenylpyruvicus CCUG 17419
143228	P. phenylpyruvicus CCUG 17886
146189	P. phenylpyruvicus CCUG 30559
146249	P. phenylpyruvicus CCUG 30701
148039	P. phenylpyruvicus CCUG 34719
151318	P. phenylpyruvicus CCUG 43735
152370	P. phenylpyruvicus CCUG 46548
152587	P. phenylpyruvicus CCUG 47152
153232	P. phenylpyruvicus CCUG 48831
154891	P. phenylpyruvicus CCUG 55560

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2943	COLUMBIA BLOOD AGAR (DSMZ Medium 429)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
41741	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
121798	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2943	positive	growth	28	mesophilic
41741	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.8

Spore formation

@ref	Spore formation	Confidence
125438		91.917

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68377	15824 ChEBI	D-fructose	-	builds acid from	from API NH
68377	17634 ChEBI	D-glucose	-	builds acid from	from API NH
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68377	17306 ChEBI	maltose	-	builds acid from	from API NH
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	17992 ChEBI	sucrose	-	builds acid from	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68377	16199 ChEBI	urea	-	hydrolysis	from API NH
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68377	alkaline phosphatase	-	3.1.3.1	from API NH
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68377	beta-galactosidase	-	3.2.1.23	from API NH
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68377	beta-lactamase	-	3.5.2.6	from API NH
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase lipase (C 8)	+		from API zym
68377	gamma-glutamyltransferase	-	2.3.2.2	from API NH
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68377	lipase	+		from API NH
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68377	proline-arylamidase	-	3.4.11.5	from API NH
68382	trypsin	-	3.4.21.4	from API zym
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68377	urease	-	3.5.1.5	from API NH
68369	urease	+	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
44170	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-
44170	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
44170	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
44170	-	-	-	-	-	-	-	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Blood
#Infection	#Patient	-

Isolation

@ref	Sample type
2943	blood
44170	Human blood
67770	Human blood
121798	Blood

Taxonmaps

69479

Global distribution of 16S sequence U46144 (>99% sequence identity) for Psychrobacter from Microbeatlas

Aquatic Samples	272
Soil Samples	183
Animal Samples	656
Plant Samples	37
Total Samples	1148

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2943	2	Risk group (German classification) According to TRBA 466
121798	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM90484642v1 assembly for Psychrobacter phenylpyruvicus	contig	GCA_904846425	29432.6	8055298414	29432	77.29
67770	52121_C02 assembly for Psychrobacter phenylpyruvicus NCTC10526	contig	GCA_900455955	29432.4	2850023359	29432	70.67
67770	ASM68580v1 assembly for Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152	scaffold	GCA_000685805	1123034.3	2563366723	1123034	57.1
67770	ASM159118v1 assembly for Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152	contig	GCA_001591185	1123034.5	2731957640	1123034	41.89

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Psychrobacter phenylpyruvicum ATCC 23333 16S ribosomal RNA gene	U46144	1433	29432
20218	Psychrobacter phenylpyruvicus gene for 16S rRNA, partial sequence, strain: NBRC 102152	AB681720	1460	29432
20218	Psychrobacter phenylpyruvicus strain NCTC 10526 16S ribosomal RNA gene, partial sequence	EF012270	689	29432
20218	M.phenylpyruvica gene for 16S rRNA	X74898	718	29432

GC content

@ref	GC-content (mol%)	Method
67770	43	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152
NCBI: GCA_000685805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no
125439	gram_stain	BacteriaNetⓘ	negative	55.10	no
125439	motility	BacteriaNetⓘ	yes	56.40	no
125439	spore_formation	BacteriaNetⓘ	no	86.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Psychrobacter phenylpyruvicus DSM 7000
PATRIC: 1123034.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	97.00	no
125438	spore-forming	spore-formingⓘ	no	91.92	no
125438	aerobic	aerobicⓘ	yes	85.02	no
125438	thermophilic	thermophileⓘ	no	94.45	yes
125438	flagellated	motile2+ⓘ	no	84.73	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Comparison of Mast Burkholderia Cepacia, Ashdown + Gentamicin, and Burkholderia Pseudomallei Selective Agar for the Selective Growth of Burkholderia Spp.	Edler C, Derschum H, Kohler M, Neubauer H, Frickmann H, Hagen RM.	Eur J Microbiol Immunol (Bp)	10.1556/1886.2016.00037	2017
	Xanthan gum biosynthesis using Xanthomonas isolates from waste bread: Process optimization and fermentation kinetics	Demirci AS, Palabiyik I, Apaydin D, Mirik M, Gumus T.	Lebensm Wiss Technol	10.1016/j.lwt.2018.11.018	2019
	Yield and rheological properties of exopolysaccharide from a local isolate: Xanthomonas axonopodis pv. vesicatoria	Demirci AS, Palabiyik I, Altan DD, Apaydin D, Gumus T.	Electron J Biotechnol		2017
	Single-cell pigment analysis of phototrophic and phyllosphere bacteria using simultaneous detection of Raman and autofluorescence spectra.	Kanno N, Shigeto S.	Appl Environ Microbiol	10.1128/aem.00129-25	2025
Phylogeny	Proposal to unify Clostridium orbiscindens Winter et al. 1991 and Eubacterium plautii (Séguin 1928) Hofstad and Aasjord 1982, with description of Flavonifractor plautii gen. nov., comb. nov., and reassignment of Bacteroides capillosus to Pseudoflavonifractor capillosus gen. nov., comb. nov.	Carlier JP, Bedora-Faure M, K'ouas G, Alauzet C, Mory F.	Int J Syst Evol Microbiol	10.1099/ijs.0.016725-0	2010
Phylogeny	Surgical wound infection associated with Psychrobacter phenylpyruvicus-like organism.	Stepanovic S, Vukovic D, Bedora-Faure M, K'ouas G, Djukic S, Svabic-Vlahovic M, Carlier JP	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2006.08.002	2006
Phylogeny	Phylogeny of the family Moraxellaceae by 16S rDNA sequence analysis, with special emphasis on differentiation of Moraxella species.	Pettersson B, Kodjo A, Ronaghi M, Uhlen M, Tonjum T	Int J Syst Bacteriol	10.1099/00207713-48-1-75	1998
Pathogenicity	Novel Psychrobacter species from Antarctic ornithogenic soils.	Bowman JP, Cavanagh J, Austin JJ, Sanderson K	Int J Syst Bacteriol	10.1099/00207713-46-4-841	1996
	Halomonas salinarum sp. nov., a moderately halophilic bacterium isolated from saline soil in Yingkou, China.	Yin YL, Li FL, Wang L.	Arch Microbiol	10.1007/s00203-022-03032-3	2022
Phylogeny	Psychrobacter pygoscelis sp. nov. isolated from the penguin Pygoscelis papua.	Kampfer P, Glaeser SP, Irgang R, Fernandez-Negrete G, Poblete-Morales M, Fuentes-Messina D, Cortez-San Martin M, Avendano-Herrera R	Int J Syst Evol Microbiol	10.1099/ijsem.0.003739	2020
Phylogeny	Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.	Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D	Int J Syst Evol Microbiol	10.1099/ijsem.0.002065	2017

References

#2943	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7000
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41741	; Curators of the CIP;
#44170	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 351
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121798	Collection of Institut Pasteur ; Curators of the CIP; CIP 82.27
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Psychrobacter phenylpyruvicus (CCUG 351, CIP 82.27, LMG 5372)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_904846425

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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