Psychrobacter immobilis 14 is an obligate aerobe, Gram-negative, oval-shaped bacterium that was isolated from poultry carcass.
Gram-negative oval-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Moraxellaceae |
| Genus Psychrobacter |
| Species Psychrobacter immobilis |
| Full scientific name Psychrobacter immobilis Juni and Heym 1986 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 3064 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 38100 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 120056 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 120056 | NaCl | positive | growth | 0-10 % |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 120056 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 120056 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 120056 | 17234 ChEBI | glucose | - | fermentation | |
| 120056 | 17234 ChEBI | glucose | +/- | degradation | |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | + | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 120056 | 17716 ChEBI | lactose | - | fermentation | |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 120056 | 17632 ChEBI | nitrate | + | reduction | |
| 120056 | 17632 ChEBI | nitrate | - | respiration | |
| 120056 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | + | builds acid from | from API 50CH acid |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 120056 | 132112 ChEBI | sodium thiosulfate | + | builds gas from | |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | + | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 120056 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 120056 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 120056 | amylase | - | ||
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 120056 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 120056 | caseinase | - | 3.4.21.50 | |
| 120056 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 120056 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 120056 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 120056 | gelatinase | - | ||
| 120056 | lecithinase | + | ||
| 68382 | leucine arylamidase | - | 3.4.11.1 | from API zym |
| 120056 | lipase | + | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 120056 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 120056 | ornithine decarboxylase | - | 4.1.1.17 | |
| 120056 | oxidase | + | ||
| 120056 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 120056 | protease | + | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 120056 | tryptophan deaminase | - | ||
| 120056 | tween esterase | + | ||
| 120056 | urease | + | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120056 | not determinedn.d. | - | - | - | - | +/- | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | - | + | + | +/- | +/- | + | - | - | - | +/- | - | - | - | +/- | + | - | - | + | - | - | - | - | - | - | - | - | + |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM314858v1 assembly for Psychrobacter immobilis DSM 7229 | scaffold | 498 | 70.08 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Psychrobacter immobilis partial 16S rRNA gene, strain CECT 5008 | FR717279 | 1545 | 498 | ||
| 20218 | Psychrobacter immobilis 16S rRNA gene, strain DSM 7229T | AJ309942 | 1492 | 498 | ||
| 3064 | Psychrobacter immobilis gene for 16S rRNA, partial sequence, strain: NBRC 15733 | AB680954 | 1464 | 498 | ||
| 3064 | Psychrobacter immobilis strain ATCC 43116 16S ribosomal RNA gene, partial sequence | HQ698589 | 1398 | 498 | ||
| 3064 | Psychrobacter immobilis 16S rRNA gene, partial | AJ247264 | 451 | 498 | ||
| 3064 | Psychrobacter immobilis 16S ribosomal RNA gene, partial sequence | U39399 | 1477 | 498 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 45 | high performance liquid chromatography (HPLC) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 99.55 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 89.34 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 59.72 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 98.21 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.49 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 95.34 | no |
| 125438 | aerobic | aerobicⓘ | yes | 87.99 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.41 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 70.72 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Characterization of Acinetobacter type strains and isolates obtained from wastewater treatment plants by PCR fingerprinting. | Wiedmann-al-Ahmad M, Tichy HV, Schon G. | Appl Environ Microbiol | 10.1128/aem.60.11.4066-4071.1994 | 1994 | |
| Bacterial diversity obtained by culturable approaches in the gut of Glossina pallidipes population from a non sleeping sickness focus in Tanzania: preliminary results. | Malele I, Nyingilili H, Lyaruu E, Tauzin M, Bernard Ollivier B, Cayol JL, Fardeau ML, Geiger A. | BMC Microbiol | 10.1186/s12866-018-1288-3 | 2018 | ||
| Phylogeny | Relationship of CDC group EO-2 and psychrobacter immobilis. | Hudson MJ, Hollis DG, Weaver RE, Galvis CG. | J Clin Microbiol | 10.1128/jcm.25.10.1907-1910.1987 | 1987 | |
| Phylogeny | Cultural and chemical characterization of CDC groups EO-2, M-5, and M-6, Moraxella (Moraxella) species, Oligella urethralis, Acinetobacter species, and Psychrobacter immobilis. | Moss CW, Wallace PL, Hollis DG, Weaver RE. | J Clin Microbiol | 10.1128/jcm.26.3.484-492.1988 | 1988 | |
| Enzymology | Identification of Moraxella bovis by qualitative genetic transformation and nutritional assays. | Juni E, Heym GA, Newcomb RD. | Appl Environ Microbiol | 10.1128/aem.54.5.1304-1306.1988 | 1988 | |
| Phylogeny | Psychrobacter okhotskensis sp. nov., a lipase-producing facultative psychrophile isolated from the coast of the Okhotsk Sea. | Yumoto I, Hirota K, Sogabe Y, Nodasaka Y, Yokota Y, Hoshino T | Int J Syst Evol Microbiol | 10.1099/ijs.0.02686-0 | 2003 | |
| Phylogeny | Characterization of several Psychrobacter strains isolated from Antarctic environments and description of Psychrobacter luti sp. nov. and Psychrobacter fozii sp. nov. | Bozal N, Montes MJ, Tudela E, Guinea J | Int J Syst Evol Microbiol | 10.1099/ijs.0.02457-0 | 2003 | |
| Phylogeny | Paracoccus yeeii sp. nov. (formerly CDC group EO-2), a novel bacterial species associated with human infection. | Daneshvar MI, Hollis DG, Weyant RS, Steigerwalt AG, Whitney AM, Douglas MP, Macgregor JP, Jordan JG, Mayer LW, Rassouli SM, Barchet W, Munro C, Shuttleworth L, Bernard K | J Clin Microbiol | 10.1128/JCM.41.3.1289-1294.2003 | 2003 |
| #3064 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7229 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20216 | Curators of the JMRC: Jena Microbial Resource Collection (JMRC): |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #38100 | ; Curators of the CIP; |
| #45227 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 9708 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #120056 | Collection of Institut Pasteur ; Curators of the CIP; CIP 102557 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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