Name: Alkanindiges illinoisensis DSM 15370
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8149

Type strain:

Species: Alkanindiges illinoisensis

Culture col. no.: DSM 15370, MVAB Hex1

Strain history: <- B. W. Bogan; MVAB Hex1

NCBI tax ID(s): 1120977 (strain), 197183 (species)

SI-ID 113591

DSM 15370

Special Collections

DSMZ

Section

Alkanindiges illinoisensis DSM 15370 is a Gram-negative bacterium that was isolated from crude oil-contaminated soil.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Alkanindiges*
	Species	**Alkanindiges illinoisensis**
	Full Scientific Name (LPSN)	Alkanindiges illinoisensis Bogan et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99

Multimedia content

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Caption:

electron microscopic image

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Intellectual property rights:

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electron microscopic image

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Intellectual property rights:

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electron microscopic image

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Intellectual property rights:

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electron microscopic image

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Information on culture and growth conditions Culture and growth conditions

[Ref.: #5882]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #5882]

Culture medium growth

[Ref.: #5882]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5882]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5882]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %94.809
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5882]	Sample type/isolated from	crude oil-contaminated soil
[Ref.: #5882]	Geographic location (country and/or sea, region)	Illinois
[Ref.: #5882]	Country	USA
[Ref.: #5882]	Country ISO 3 Code	USA
[Ref.: #5882]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Engineered	#Industrial	#Oil reservoir
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5882]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5882]	Alkane-degrading soil bacterium MVAB Hex1 16S ribosomal RNA gene, complete sequence	AF513979	1533	GenBank ENA	197183 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alkanindiges illinoisensis DSM 15370	GCA_000619845	scaffold	GenBank ENA	1120977 tax ID	*
[Ref.: #66792]	Alkanindiges illinoisensis DSM 15370	1120977.3	wgs	PATRIC	1120977 tax ID	*
[Ref.: #66792]	Alkanindiges illinoisensis DSM 15370	2558860994	draft	JGI IMG/M	1120977 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alkanindiges illinoisensis DSM 15370 DSM 15370 NCBI: GCA_000619845.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alkanindiges illinoisensis DSM 15370 DSM 15370 NCBI: GCA_000619845.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.344	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.369	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	94.809	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	65.59	no

Availability in culture collections External links

[Ref.: #5882]

Culture collection no.

DSM 15370, MVAB Hex1

[Ref.: #77552]

SI-ID 113591

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alkanindiges hydrocarboniclasticus sp. nov. Isolated From Crude Oil Contaminated Sands and Emended Description of the Genus Alkanindiges.	Yadav S, Kim JS, Lee SS	Curr Microbiol	10.1007/s00284-020-02266-y	2020	*
Phylogeny	Alkanindiges illinoisensis gen. nov., sp. nov., an obligately hydrocarbonoclastic, aerobic squalane-degrading bacterium isolated from oilfield soils.	Bogan BW, Sullivan WR, Kayser KJ, Derr KD, Aldrich HC, Paterek JR	Int J Syst Evol Microbiol	10.1099/ijs.0.02568-0	2003	*

References

#5882

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15370

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77552

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID113591.1 )

* These data were automatically processed and therefore are not curated

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Alkanindiges illinoisensis DSM 15370 DSM 15370

Alkanindiges illinoisensis DSM 15370 DSM 15370

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