Name: Acinetobacter rudis G30
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8147

Type strain:

Species: Acinetobacter rudis

Strain Designation: G30

Culture col. no.: DSM 24031, CCUG 57889, CECT 7818, LMG 26107, CIP 110305

Strain history: CIP <- 2011, CCUG <- 2009, C.M. Manaia, Catolica Portuguesa Univ., Porto, Portugal <- E. Hantsis Zacharov <- M. Halpern, Haifa Univ., Oranim, Tivon, Israel: strain G30

NCBI tax ID(s): 632955 (species)

SI-ID 371127

LMG 26107, CCUG 57889, CECT 7818, DSM 24031, CIP 110305

Other strains from Acinetobacter rudis

A. rudis CCUG 57885

Section

Acinetobacter rudis G30 is an aerobe, mesophilic bacterium that was isolated from raw milk.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Acinetobacter*
	Species	**Acinetobacter rudis**
	Full Scientific Name (LPSN)	Acinetobacter rudis Vaz-Moreira et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #122300]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #122300]	Cell shape	oval-shaped

[Ref.: #122300]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.766

[Ref.: #17480]	Type of hemolysis	gamma
[Ref.: #17480]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17480]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #17480]

Culture medium growth

[Ref.: #17480]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17480]

Culture medium composition

expand / minimize

[Ref.: #42129]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #42129]

Culture medium growth

[Ref.: #42129]

Culture medium composition

expand / minimize

[Ref.: #122300]

Culture medium

CIP Medium 72

[Ref.: #122300]

Culture medium growth

[Ref.: #122300]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17480]	growth	30 °C
[Ref.: #42129]	growth	30 °C
[Ref.: #61511]	growth	30 °C

[Ref.: #17480]	Temperature range	mesophilic
[Ref.: #42129]	Temperature range	mesophilic
[Ref.: #61511]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #61511]	Oxygen tolerance	aerobe
[Ref.: #122300]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #122300]	nitrate ChEBI	-	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #122300]	nitrite ChEBI	-	reduction
[Ref.: #68369]	tryptophan ChEBI	+	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #122300]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	yes	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	+	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #17480]	catalase	+	1.11.1.6
[Ref.: #122300]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #17480]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122300]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122300]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #17480]	23878	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122300]	12507	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17480]	Sample type/isolated from	raw milk
[Ref.: #17480]	Geographic location (country and/or sea, region)	northern Israel
[Ref.: #17480]	Country	Israel
[Ref.: #17480]	Country ISO 3 Code	ISR
[Ref.: #17480]	Continent	Asia

[Ref.: #61511]	Sample type/isolated from	Raw milk
[Ref.: #61511]	Geographic location (country and/or sea, region)	Northern Israel
[Ref.: #61511]	Country	Israel
[Ref.: #61511]	Country ISO 3 Code	ISR
[Ref.: #61511]	Continent	Asia

[Ref.: #122300]	Sample type/isolated from	Food, Raw milk
[Ref.: #122300]	Geographic location (country and/or sea, region)	Haifa
[Ref.: #122300]	Country	Israel
[Ref.: #122300]	Country ISO 3 Code	ISR
[Ref.: #122300]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Milk
#Host	#Mammals	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF204258 (>99% sequence identity) for Acinetobacter rudis subclade from Microbeatlas

Aquatic Samples	429
Soil Samples	975
Animal Samples	1186
Plant Samples	110
Total Samples	2700

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17480]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122300]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17480]	Acinetobacter rudis CIP 110305 strain G30 16S ribosomal RNA gene, partial sequence	EF204258	1500	ENA	421052 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acinetobacter rudis DSM 24031	GCA_000829675	contig	GenBank	632955 tax ID	*
[Ref.: #66792]	Acinetobacter rudis strain DSM 24031	632955.6	wgs	PATRIC	632955 tax ID	*
[Ref.: #66792]	Acinetobacter rudis DSM 24031	2671181009	draft	JGI IMG/M	632955 tax ID	*

[Ref.: #17480]

GC-content

39.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acinetobacter rudis strain DSM 24031 PATRIC: 632955.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acinetobacter rudis strain DSM 24031 PATRIC: 632955.6
[Ref.: #69480]	gram-positive	no	97.365	no
[Ref.: #69480]	anaerobic	no	96.996	no
[Ref.: #69480]	halophile	no	87.021	no
[Ref.: #69480]	spore-forming	no	96.71	no
[Ref.: #69480]	glucose-util	no	88.723	yes
[Ref.: #69480]	thermophile	no	99.817	no
[Ref.: #69480]	flagellated	no	94.378	no
[Ref.: #69480]	aerobic	yes	88.076	no
[Ref.: #69480]	motile	no	88.489	no
[Ref.: #69480]	glucose-ferment	no	90.294	yes

Availability in culture collections External links

[Ref.: #17480]

Culture collection no.

DSM 24031, CCUG 57889, CECT 7818, LMG 26107, CIP 110305

[Ref.: #77550]

SI-ID 371127

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acinetobacter larvae sp. nov., isolated from the larval gut of Omphisa fuscidentalis.	Liu S, Wang Y, Ruan Z, Ma K, Wu B, Xu Y, Wang J, You Y, He M, Hu G	Int J Syst Evol Microbiol	10.1099/ijsem.0.001644	2017	*
Phylogeny	Acinetobacter rudis sp. nov., isolated from raw milk and raw wastewater.	Vaz-Moreira I, Novo A, Hantsis-Zacharov E, Lopes AR, Gomila M, Nunes OC, Manaia CM, Halpern M	Int J Syst Evol Microbiol	10.1099/ijs.0.027045-0	2011	*

References

#17480

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24031

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42129 ; Curators of the CIP;
#61511 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57889

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77550

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID371127.1 )

#122300 Collection of Institut Pasteur ; Curators of the CIP; CIP 110305
* These data were automatically processed and therefore are not curated

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Acinetobacter rudis strain DSM 24031

Acinetobacter rudis strain DSM 24031

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