Acinetobacter bereziniae 69 is an aerobe, Gram-negative, ovoid-shaped human pathogen that was isolated from human wound.
Gram-negative ovoid-shaped aerobe human pathogen genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Moraxellaceae |
| Genus Acinetobacter |
| Species Acinetobacter bereziniae |
| Full scientific name Acinetobacter bereziniae Nemec et al. 2010 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 18038 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | Medium recipe at MediaDive | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water | ||
| 42146 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 116789 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 29466 | 62064 ChEBI | 2,3-butanediol | + | carbon source | |
| 29466 | 30089 ChEBI | acetate | + | carbon source | |
| 68369 | 17128 ChEBI | adipate | + | assimilation | from API 20NE |
| 29466 | 16449 ChEBI | alanine | + | carbon source | |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 29466 | 35391 ChEBI | aspartate | + | carbon source | |
| 29466 | 16947 ChEBI | citrate | + | carbon source | |
| 116789 | 16947 ChEBI | citrate | + | carbon source | |
| 68369 | 17634 ChEBI | D-glucose | - | assimilation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | + | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 29466 | 16236 ChEBI | ethanol | + | carbon source | |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 116789 | 17234 ChEBI | glucose | +/- | degradation | |
| 29466 | 29987 ChEBI | glutamate | + | carbon source | |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 29466 | 24996 ChEBI | lactate | + | carbon source | |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 116789 | 17632 ChEBI | nitrate | - | reduction | |
| 116789 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 116789 | 16301 ChEBI | nitrite | - | reduction | |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 116789 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 116789 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | - | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 18038 | catalase | + | 1.11.1.6 | |
| 29466 | catalase | + | 1.11.1.6 | |
| 116789 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | - | 1.9.3.1 | from API 20NE |
| 18038 | cytochrome-c oxidase | - | 1.9.3.1 | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 116789 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 116789 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | + | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 116789 | oxidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 116789 | urease | + | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68382 | valine arylamidase | - | from API zym |
Global distribution of 16S sequence Z93443 (>99% sequence identity) for Acinetobacter from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | Acin_bere_CIP_70_12_V1 assembly for Acinetobacter bereziniae LMG 1003 = CIP 70.12 | scaffold | 981324 | 65.64 | ||||
| 66792 | ASM24829v2 assembly for Acinetobacter bereziniae LMG 1003 = CIP 70.12 | contig | 981324 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Acinetobacter bereziniae 16S rRNA gene, strain ATCC 17924 | HE651922 | 1531 | 106648 | ||
| 18038 | Acinetobacter sp. 16S rRNA gene (strain ATCC 17924) | Z93443 | 1418 | 106648 | ||
| 124043 | Acinetobacter bereziniae strain LMG 1003 16S ribosomal RNA gene, partial sequence. | OP818094 | 1367 | 106648 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 95.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 76.40 | no |
| 125439 | motility | BacteriaNetⓘ | no | 50.20 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 92.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 97.35 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 88.23 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 93.36 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 77.78 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Bacteremia due to Acinetobacter genomic species 10. | Kuo SC, Fung CP, Lee YT, Chen CP, Chen TL. | J Clin Microbiol | 10.1128/jcm.01857-09 | 2010 | |
| First identification of multidrug-resistant Acinetobacter bereziniae isolates harboring bla NDM-1 from hospitals in South China. | Mo XM, Pan Q, Seifert H, Xing XW, Yuan J, Zhou ZY, Luo XY, Liu HM, Xie YL, Yang LQ, Hong XB, Higgins PG, Wong NK. | Heliyon | 10.1016/j.heliyon.2022.e12365 | 2023 | ||
| Characterization of the diverse plasmid pool harbored by the blaNDM-1-containing Acinetobacter bereziniae HPC229 clinical strain. | Brovedan M, Repizo GD, Marchiaro P, Viale AM, Limansky A. | PLoS One | 10.1371/journal.pone.0220584 | 2019 | ||
| Metabolism | Biochemical and genetic characterization of carbapenem-hydrolyzing beta-lactamase OXA-229 from Acinetobacter bereziniae. | Bonnin RA, Ocampo-Sosa AA, Poirel L, Guet-Revillet H, Nordmann P. | Antimicrob Agents Chemother | 10.1128/aac.00257-12 | 2012 | |
| Effects of Different Storage Temperatures on Bacterial Communities and Functional Potential in Pork Meat. | Zhao F, Wei Z, Zhou G, Kristiansen K, Wang C. | Foods | 10.3390/foods11152307 | 2022 | ||
| Pathogenicity | Probing the size limit for nanomedicine penetration into Burkholderia multivorans and Pseudomonas aeruginosa biofilms. | Forier K, Messiaen AS, Raemdonck K, Nelis H, De Smedt S, Demeester J, Coenye T, Braeckmans K. | J Control Release | 10.1016/j.jconrel.2014.07.061 | 2014 | |
| Screening of the Potential Bioactivities of Pennyroyal (Mentha pulegium L.) Essential Oil. | Luis A, Domingues F. | Antibiotics (Basel) | 10.3390/antibiotics10101266 | 2021 | ||
| Synthesis and antimicrobial activity of aminoalkyl resveratrol derivatives inspired by cationic peptides. | Cebrian R, Lucas R, Fernandez-Cantos MV, Slot K, Penalver P, Martinez-Garcia M, Parraga-Leo A, de Paz MV, Garcia F, Kuipers OP, Morales JC. | J Enzyme Inhib Med Chem | 10.1080/14756366.2022.2146685 | 2023 | ||
| Pathogenicity | Bioinformatic Analysis of the Type VI Secretion System and Its Potential Toxins in the Acinetobacter Genus. | Repizo GD, Espariz M, Seravalle JL, Salcedo SP. | Front Microbiol | 10.3389/fmicb.2019.02519 | 2019 | |
| Enzymology | Sequence analysis and biochemical characterisation of chromosomal CAV-1 (Aeromonas caviae), the parental cephalosporinase of plasmid-mediated AmpC 'FOX' cluster. | Fosse T, Giraud-Morin C, Madinier I, Labia R. | FEMS Microbiol Lett | 10.1016/s0378-1097(03)00253-2 | 2003 | |
| Phylogeny | Genomic diversity of Burkholderia pseudomallei clinical isolates: subtractive hybridization reveals a Burkholderia mallei-specific prophage in B. pseudomallei 1026b. | DeShazer D. | J Bacteriol | 10.1128/jb.186.12.3938-3950.2004 | 2004 | |
| Phylogeny | Pseudomonas atacamensis sp. nov., isolated from the rhizosphere of desert bloom plant in the region of Atacama, Chile. | Poblete-Morales M, Carvajal D, Almasia R, Michea S, Cantillana C, Levican A, Silva-Moreno E. | Antonie Van Leeuwenhoek | 10.1007/s10482-020-01427-0 | 2020 | |
| Phylogeny | Acinetobacter piscicola sp. nov., isolated from diseased farmed Murray cod (Maccullochella peelii peelii). | Liu Y, Rao Q, Tu J, Zhang J, Huang M, Hu B, Lin Q, Luo T | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002608 | 2018 | |
| Phylogeny | Acinetobacter larvae sp. nov., isolated from the larval gut of Omphisa fuscidentalis. | Liu S, Wang Y, Ruan Z, Ma K, Wu B, Xu Y, Wang J, You Y, He M, Hu G | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001644 | 2017 | |
| Phylogeny | Acinetobacter bereziniae sp. nov. and Acinetobacter guillouiae sp. nov., to accommodate Acinetobacter genomic species 10 and 11, respectively. | Nemec A, Musilek M, Sedo O, De Baere T, Maixnerova M, van der Reijden TJK, Zdrahal Z, Vaneechoutte M, Dijkshoorn L | Int J Syst Evol Microbiol | 10.1099/ijs.0.013656-0 | 2009 |
| #18038 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25435 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #25869 | IJSEM 896 2010 ( DOI 10.1099/ijs.0.013656-0 , PubMed 19661501 ) |
| #29466 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25869 |
| #42146 | ; Curators of the CIP; |
| #48486 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 26493 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #116789 | Collection of Institut Pasteur ; Curators of the CIP; CIP 70.12 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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