Acinetobacter parvus DSM 16617 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from ear from patient with Otitis media.
Gram-negative oval-shaped obligate aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Moraxellaceae |
| Genus Acinetobacter |
| Species Acinetobacter parvus |
| Full scientific name Acinetobacter parvus Nemec et al. 2003 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 6525 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | Medium recipe at MediaDive | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water | ||
| 42157 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 121605 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125438 | 95.212 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 121605 | 16947 ChEBI | citrate | - | carbon source | |
| 68369 | 17634 ChEBI | D-glucose | - | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | + | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | - | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 121605 | 17632 ChEBI | nitrate | + | reduction | |
| 121605 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 121605 | 16301 ChEBI | nitrite | - | reduction | |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| @ref | Metabolite | Is antibiotic | Is sensitive | Is resistant | |
|---|---|---|---|---|---|
| 121605 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 121605 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 121605 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | - | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 6525 | catalase | + | 1.11.1.6 | |
| 121605 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | - | 1.9.3.1 | from API 20NE |
| 6525 | cytochrome-c oxidase | - | 1.9.3.1 | |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 121605 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 121605 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 121605 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 121605 | ornithine decarboxylase | - | 4.1.1.17 | |
| 121605 | oxidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 121605 | urease | - | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68382 | valine arylamidase | - | from API zym |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM4265636v1 assembly for Acinetobacter parvus CCM 7030 | contig | 134533 | 76.2 | ||||
| 66792 | Acin_parv_CIP108168_V1 assembly for Acinetobacter parvus DSM 16617 = CIP 108168 | scaffold | 981333 | 66.44 | ||||
| 66792 | ASM24815v2 assembly for Acinetobacter parvus DSM 16617 = CIP 108168 | contig | 981333 | 31.72 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Acinetobacter parvus strain DSM16617 16S ribosomal RNA gene, partial sequence | EF611412 | 452 | 981333 | ||
| 6525 | Acinetobacter sp. phenon 4 16S rRNA gene, strain LUH4616 (Aci602) | AJ293691 | 1465 | 134533 | ||
| 124043 | Acinetobacter parvus strain DSM 16617 16S ribosomal RNA gene, partial sequence. | MN420670 | 883 | 134533 | ||
| 124043 | Acinetobacter parvus strain LUH 4616 16S ribosomal RNA gene, partial sequence. | MT478040 | 1465 | 134533 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 86.90 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 60.20 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 84.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 98.10 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 100.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.52 | no |
| 125438 | aerobic | aerobicⓘ | yes | 88.80 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 95.21 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.47 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 76.64 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Discovery and characterization of a new class of O-linking oligosaccharyltransferases from the Moraxellaceae family. | Knoot CJ, Wantuch PL, Robinson LS, Rosen DA, Scott NE, Harding CM. | Glycobiology | 10.1093/glycob/cwac070 | 2023 | ||
| Genetics | Cloning, expression and characterization of a lipase encoding gene from human oral metagenome. | Preeti A, Hemalatha D, Rajendhran J, Mullany P, Gunasekaran P. | Indian J Microbiol | 10.1007/s12088-014-0455-y | 2014 | |
| A comprehensive genomic analysis provides insights on the high environmental adaptability of Acinetobacter strains. | Zhao Y, Wei HM, Yuan JL, Xu L, Sun JQ. | Front Microbiol | 10.3389/fmicb.2023.1177951 | 2023 | ||
| A minimal sequon sufficient for O-linked glycosylation by the versatile oligosaccharyltransferase PglS. | Knoot CJ, Robinson LS, Harding CM. | Glycobiology | 10.1093/glycob/cwab043 | 2021 | ||
| A new subclass of intrinsic aminoglycoside nucleotidyltransferases, ANT(3")-II, is horizontally transferred among Acinetobacter spp. by homologous recombination. | Zhang G, Leclercq SO, Tian J, Wang C, Yahara K, Ai G, Liu S, Feng J. | PLoS Genet | 10.1371/journal.pgen.1006602 | 2017 | ||
| Phylogeny | New PCR-based open reading frame typing method for easy, rapid, and reliable identification of Acinetobacter baumannii international epidemic clones without performing multilocus sequence typing. | Suzuki M, Hosoba E, Matsui M, Arakawa Y. | J Clin Microbiol | 10.1128/jcm.01064-14 | 2014 | |
| Pathogenicity | Assessment of Chemical Impact of Invasive Bryozoan Pectinatella magnifica on the Environment: Cytotoxicity and Antimicrobial Activity of P. magnifica Extracts. | Kollar P, Smejkal K, Salmonova H, Vlkova E, Lepsova-Skacelova O, Balounova Z, Rajchard J, Cvacka J, Jasa L, Babica P, Pazourek J. | Molecules | 10.3390/molecules21111476 | 2016 | |
| Genetics | Clinical and genomic insights into Acinetobacter parvus: A rare pathogen with low antibiotic resistance and potential clinical implications. | Tang Q, Zhou D, Yan F, Lin L, Fang J, Bao X. | J Microbiol Immunol Infect | 10.1016/j.jmii.2025.07.010 | 2025 | |
| Predominance of Acinetobacter pseudolwoffii among Acinetobacter species in domestic animals in the Czech Republic. | Sladecek V, Senk D, Stolar P, Bzdil J, Holy O. | Vet Med (Praha) | 10.17221/65/2023-vetmed | 2023 | ||
| Four novel Acinetobacter lwoffii strains isolated from the milk of cows in China with subclinical mastitis. | Chen Q, Zhou W, Cheng Y, Wang G, San Z, Guo L, Liu L, Zhao C, Sun N. | BMC Vet Res | 10.1186/s12917-024-04119-3 | 2024 | ||
| Cultivation-Based Quantification and Identification of Bacteria at Two Hygienic Key Sides of Domestic Washing Machines. | Jacksch S, Zohra H, Weide M, Schnell S, Egert M. | Microorganisms | 10.3390/microorganisms9050905 | 2021 | ||
| Enzymology | Acinetobacter parvus bacteraemia community-acquired. | Gaillard T, Darles C, Pons S, Martinaud C, Soler C, Brisou P. | Int J Med Microbiol | 10.1016/j.ijmm.2012.10.002 | 2012 | |
| Pathogenicity | The ancient small mobilizable plasmid pALWED1.8 harboring a new variant of the non-cassette streptomycin/spectinomycin resistance gene aadA27. | Kurakov A, Mindlin S, Beletsky A, Shcherbatova N, Rakitin A, Ermakova A, Mardanov A, Petrova M. | Plasmid | 10.1016/j.plasmid.2016.02.005 | 2016 | |
| Phylogeny | Intra-hospital microbiome variability is driven by accessibility and clinical activities. | Chibwe K, Sundararaju S, Zhang L, Tsui C, Tang P, Ling F. | Microbiol Spectr | 10.1128/spectrum.00296-24 | 2024 | |
| Transcriptome | Metatranscriptomic Analysis of Bacterial Communities on Laundered Textiles: A Pilot Case Study. | Jacksch S, Konig C, Kaiser D, Weide M, Ratering S, Schnell S, Egert M. | Microorganisms | 10.3390/microorganisms9081591 | 2021 | |
| Resistome and a Novel blaNDM-1-Harboring Plasmid of an Acinetobacter haemolyticus Strain from a Children's Hospital in Puebla, Mexico. | Bello-Lopez E, Castro-Jaimes S, Cevallos MA, Rocha-Gracia RDC, Castaneda-Lucio M, Saenz Y, Torres C, Gutierrez-Cazares Z, Martinez-Laguna Y, Lozano-Zarain P. | Microb Drug Resist | 10.1089/mdr.2019.0034 | 2019 | ||
| A taxonomically unique Acinetobacter strain with proteolytic and hemolytic activities recovered from a patient with a soft tissue injury. | Almuzara M, Traglia GM, Krizova L, Barberis C, Montana S, Bakai R, Tuduri A, Vay C, Nemec A, Ramirez MS. | J Clin Microbiol | 10.1128/jcm.02625-14 | 2015 | ||
| Metagenomic Insight of a Full Scale Eco-Friendly Treatment System of Textile Dye Wastewater Using Bioaugmentation of the Composite Culture CES-1. | Santhanarajan AE, Sul WJ, Yoo KJ, Seong HJ, Kim HG, Koh SC. | Microorganisms | 10.3390/microorganisms9071503 | 2021 | ||
| Enzymology | Cloning and characterization of a chitinase from Thermobifida fusca reveals Tfu_0580 as a thermostable and acidic endochitinase. | Yan Q, Fong SS. | Biotechnol Rep (Amst) | 10.1016/j.btre.2018.e00274 | 2018 | |
| Diversity of lactic acid bacteria in vegetable-based and meat-based fermented foods produced in the central region of Vietnam. | Phan YTN, Tang MT, Tran TTM, Nguyen VH, Nguyen TH, Tsuruta T, Nishino N. | AIMS Microbiol | 10.3934/microbiol.2017.1.61 | 2017 | ||
| Adaptive dif Modules in Permafrost Strains of Acinetobacter lwoffii and Their Distribution and Abundance Among Present Day Acinetobacter Strains. | Mindlin S, Beletsky A, Mardanov A, Petrova M. | Front Microbiol | 10.3389/fmicb.2019.00632 | 2019 | ||
| Targeted next-generation sequencing of the 16S-23S rRNA region for culture-independent bacterial identification - increased discrimination of closely related species. | Sabat AJ, van Zanten E, Akkerboom V, Wisselink G, van Slochteren K, de Boer RF, Hendrix R, Friedrich AW, Rossen JWA, Kooistra-Smid AMDM. | Sci Rep | 10.1038/s41598-017-03458-6 | 2017 | ||
| Phylogeny | Identification of 50 class D beta-lactamases and 65 Acinetobacter-derived cephalosporinases in Acinetobacter spp. | Perichon B, Goussard S, Walewski V, Krizova L, Cerqueira G, Murphy C, Feldgarden M, Wortman J, Clermont D, Nemec A, Courvalin P. | Antimicrob Agents Chemother | 10.1128/aac.01261-13 | 2014 | |
| Genetics | The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences. | Touchon M, Cury J, Yoon EJ, Krizova L, Cerqueira GC, Murphy C, Feldgarden M, Wortman J, Clermont D, Lambert T, Grillot-Courvalin C, Nemec A, Courvalin P, Rocha EP. | Genome Biol Evol | 10.1093/gbe/evu225 | 2014 | |
| Enzymology | CRISPR-cas subtype I-Fb in Acinetobacter baumannii: evolution and utilization for strain subtyping. | Karah N, Samuelsen O, Zarrilli R, Sahl JW, Wai SN, Uhlin BE. | PLoS One | 10.1371/journal.pone.0118205 | 2015 | |
| Genetics | The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen. | Repizo GD, Viale AM, Borges V, Cameranesi MM, Taib N, Espariz M, Brochier-Armanet C, Gomes JP, Salcedo SP. | Genome Biol Evol | 10.1093/gbe/evx162 | 2017 | |
| Enzymology | Origin in Acinetobacter guillouiae and dissemination of the aminoglycoside-modifying enzyme Aph(3')-VI. | Yoon EJ, Goussard S, Touchon M, Krizova L, Cerqueira G, Murphy C, Lambert T, Grillot-Courvalin C, Nemec A, Courvalin P. | mBio | 10.1128/mbio.01972-14 | 2014 | |
| Structural Basis for Toughness and Flexibility in the C-terminal Passenger Domain of an Acinetobacter Trimeric Autotransporter Adhesin. | Koiwai K, Hartmann MD, Linke D, Lupas AN, Hori K. | J Biol Chem | 10.1074/jbc.m115.701698 | 2016 | ||
| Phylogeny | Acinetobacter parvus sp. nov., a small-colony-forming species isolated from human clinical specimens. | Nemec A, Dijkshoorn L, Cleenwerck I, De Baere T, Janssens D, van der Reijden TJK, Jezek P, Vaneechoutte M | Int J Syst Evol Microbiol | 10.1099/ijs.0.02631-0 | 2003 |
| #6525 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16617 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #42157 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #121605 | Collection of Institut Pasteur ; Curators of the CIP; CIP 108168 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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