Cite this strain

"Acinetobacter marinus" (DSM 16312, CIP 110634, KCTC 12259)

BacDive ID 8137

Type strain

Strain Designation SW-3

Culture col. no. DSM 16312 CIP 110634 KCTC 12259 CCUG 56484 SW-3

NCBI tax ID(s) 281375

Special Collections DSMZ CCUG KCTC CIP

History <- J.-H. Yoon; SW-3 2013, KCTC CIP <- 2013, DSMZ <- JH Yoon, KRIBB, Daejon, Korea: strain SW-3

Links

"Acinetobacter marinus" SW-3 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from sea water.

Gram-negative oval-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 232794

DSM 16312,CIP 110634,KCTC 12259,CCUG 56484T

@ref 20215

Last LPSN update 2026-02-09 11:19:38

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Acinetobacter

Species "Acinetobacter marinus"

Full scientific name Acinetobacter marinus Yoon et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
115956	negative	oval-shaped

Colony morphology

6358

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6358	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
33590	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
36425	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
115956	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6358	positive	growth	30	mesophilic
33590	positive	growth	30	mesophilic
36425	positive	growth	30	mesophilic
60984	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

60984

Oxygen toleranceaerobe

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	biotin biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	octane oxidation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	adipate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	quinate degradation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ceramide biosynthesis	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	heme metabolism	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	alanine metabolism	82.76	24 of 29
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	vitamin B6 metabolism	81.82	9 of 11
66794	3-chlorocatechol degradation	80	4 of 5
66794	3-phenylpropionate degradation	80	12 of 15
66794	peptidoglycan biosynthesis	80	12 of 15
66794	methylglyoxal degradation	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	4-hydroxymandelate degradation	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	purine metabolism	75.53	71 of 94
66794	CMP-KDO biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propionate fermentation	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	leucine metabolism	69.23	9 of 13
66794	urea cycle	69.23	9 of 13
66794	flavin biosynthesis	66.67	10 of 15
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	cysteine metabolism	66.67	12 of 18
66794	serine metabolism	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	allantoin degradation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	lipid metabolism	64.52	20 of 31
66794	proline metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	tryptophan metabolism	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	glycine betaine biosynthesis	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	phenol degradation	60	12 of 20
66794	lipoate biosynthesis	60	3 of 5
66794	methionine metabolism	57.69	15 of 26
66794	histidine metabolism	55.17	16 of 29
66794	lysine metabolism	54.76	23 of 42
66794	pentose phosphate pathway	54.55	6 of 11
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	oxidative phosphorylation	53.85	49 of 91
66794	sulfate reduction	53.85	7 of 13
66794	glycolysis	52.94	9 of 17
66794	ketogluconate metabolism	50	4 of 8
66794	phenylmercury acetate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	Entner Doudoroff pathway	50	5 of 10
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	resorcinol degradation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	arginine metabolism	50	12 of 24
66794	glycogen biosynthesis	50	2 of 4
66794	tyrosine metabolism	50	7 of 14
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	nitrate assimilation	44.44	4 of 9
66794	d-mannose degradation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	starch degradation	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	methane metabolism	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	degradation of sugar alcohols	31.25	5 of 16
66794	coenzyme M biosynthesis	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	chlorophyll metabolism	27.78	5 of 18
66794	degradation of hexoses	27.78	5 of 18
66794	ascorbate metabolism	27.27	6 of 22
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	degradation of pentoses	25	7 of 28
66794	arachidonic acid metabolism	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
6358	sea water	Yellow Sea, Wando-gun	Republic of Korea	KOR	Asia
60984	Sea water	Yellow Sea	Republic of Korea	KOR	Asia
115956	Environment, Sea water	Yellow sea	Republic of Korea	KOR	Asia	2007

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
115956	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4264984v1 assembly for Acinetobacter marinus CCUG 56484	contig	GCA_042649845	281375	72.02

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6358	Acinetobacter marinus strain SW-3 16S ribosomal RNA, partial sequence	NR_115298	1493		281375

GC content

@ref	GC-content (mol%)	Method
6358	44.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genome-Wide Analysis of Sugar Transporters Identifies the gtsA Gene for Glucose Transportation in Pseudomonas stutzeri A1501.	Liu Y, Shang L, Zhan Y, Lin M, Liu Z, Yan Y.	Microorganisms	10.3390/microorganisms8040592	2020
Genetics	Acinetobacter sedimenti sp. nov., isolated from beach sediment.	Zheng K, Hong Y, Guo Z, Debnath SC, Yan C, Li K, Chen G, Xu J, Wu F, Zheng D, Wang P.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005609	2022
Phylogeny	Acinetobacter marinus sp. nov. and Acinetobacter seohaensis sp. nov., isolated from sea water of the Yellow Sea in Korea.	Yoon JH, Kim IG, Oh TK	J Microbiol Biotechnol		2007

References

#6358	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16312
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33590	; Curators of the CIP;
#36425	; Curators of the CIP;
#60984	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56484
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#115956	Collection of Institut Pasteur ; Curators of the CIP; CIP 110634
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Acinetobacter marinus" (DSM 16312, CIP 110634, KCTC 12259)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042649845

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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