Name: Acinetobacter baylyi ADP1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8128

Type strain:

Species: Acinetobacter baylyi

Strain Designation: ADP1, BD413

Culture col. no.: DSM 24193, ATCC 33305

Strain history: <- de Berardinis, Genoscope (CEA), Evry, France; ADP1 <- N. Ornston, Genoscope (CEA), Evry, France; ADP1 <- Taylor and Juni; BD413

NCBI tax ID(s): 202950 (species)

Other strains from Acinetobacter baylyi

A. baylyi B2, DSM 14961, CIP 107474, CCUG ... (type strain)
A. baylyi A7, DSM 14959, CIP 107476
A. baylyi C5, DSM 14963, CIP 107473

Section

Acinetobacter baylyi ADP1 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Acinetobacter*
	Species	**Acinetobacter baylyi**
	Full Scientific Name (LPSN)	Acinetobacter baylyi Carr et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #17540]	Type of hemolysis	gamma
[Ref.: #17540]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17540]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #17540]

Culture medium growth

[Ref.: #17540]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17540]

Culture medium composition

expand / minimize

[Ref.: #17540]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #17540]

Culture medium growth

[Ref.: #17540]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17540]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17540]			growth	28 °C
[Ref.: #17540]			growth	30 °C

[Ref.: #17540]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #17540]	catalase	+	1.11.1.6
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #17540]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #17540]	25144	-	-	-	-	+	-	-	-	+	-	-	-	-	-	+	+	+	+	+	-	-
[Ref.: #17540]	23881	-	-	-	-	+	-	-	-	+	-	-	-	-	-	+	+	+	+	+	-	-
[Ref.: #17540]	23880	-	-	-	-	+	-	-	-	+	-	-	-	-	-	+	+	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17540]	Sample type/isolated from	soil
[Ref.: #17540]	Country	USA
[Ref.: #17540]	Country ISO 3 Code	USA
[Ref.: #17540]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM410709 (>99% sequence identity) for Acinetobacter from Microbeatlas

Aquatic Samples	787
Soil Samples	84
Animal Samples	727
Plant Samples	282
Total Samples	1880

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17540]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17540]	Acinetobacter baylyi 16S rRNA gene, strain B2	AM410709	1408	ENA	1120924 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acinetobacter baylyi ADP1	GCA_000046845	complete	GenBank	62977 tax ID	*
[Ref.: #66792]	Acinetobacter baylyi ADP1	637000002	complete	JGI IMG/M	62977 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acinetobacter baylyi ADP1 ADP1 NCBI: GCA_000046845.1
[Ref.: #69480]	motile	no	92.384	no
[Ref.: #69480]	flagellated	no	94.411	no
[Ref.: #69480]	gram-positive	no	97.736	no
[Ref.: #69480]	anaerobic	no	98.709	no
[Ref.: #69480]	aerobic	yes	94.206	no
[Ref.: #69480]	halophile	no	80.839	no
[Ref.: #69480]	spore-forming	no	97.792	no
[Ref.: #69480]	thermophile	no	99.74	no
[Ref.: #69480]	glucose-util	no	51.412	yes
[Ref.: #69480]	glucose-ferment	no	89.021	yes

Availability in culture collections External links

[Ref.: #17540]

Culture collection no.

DSM 24193, ATCC 33305

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Succinate, iron chelation, and monovalent cations affect the transformation efficiency of Acinetobacter baylyi ATCC 33305 during growth in complex media.	Leong CG, Boyd CM, Roush KS, Tenente R, Lang KM, Lostroh CP	Can J Microbiol	10.1139/cjm-2017-0393	2017	*
Metabolism	The role of core and accessory type IV pilus genes in natural transformation and twitching motility in the bacterium Acinetobacter baylyi.	Leong CG, Bloomfield RA, Boyd CA, Dornbusch AJ, Lieber L, Liu F, Owen A, Slay E, Lang KM, Lostroh CP	PLoS One	10.1371/journal.pone.0182139	2017	*
Pathogenicity	Plasmid-mediated fitness advantage of Acinetobacter baylyi in sulfadiazine-polluted soil.	Jechalke S, Kopmann C, Richter M, Moenickes S, Heuer H, Smalla K	FEMS Microbiol Lett	10.1111/1574-6968.12284	2013	*
Enzymology	Preparation of ethyl 3R,5S-6-(benzyloxy)-3,5-dihydroxy-hexanoate by recombinant diketoreductase in a biphasic system.	Wu X, Chen C, Liu N, Chen Y	Bioresour Technol	10.1016/j.biortech.2010.11.104	2010	*
Metabolism	Visual evidence of horizontal gene transfer between plants and bacteria in the phytosphere of transplastomic tobacco.	Pontiroli A, Rizzi A, Simonet P, Daffonchio D, Vogel TM, Monier JM	Appl Environ Microbiol	10.1128/AEM.02632-08	2009	*
Metabolism	Strategy for in situ detection of natural transformation-based horizontal gene transfer events.	Rizzi A, Pontiroli A, Brusetti L, Borin S, Sorlini C, Abruzzese A, Sacchi GA, Vogel TM, Simonet P, Bazzicalupo M, Nielsen KM, Monier JM, Daffonchio D	Appl Environ Microbiol	10.1128/AEM.02185-07	2007	*
Enzymology	Lack of detectable DNA uptake by bacterial gut isolates grown in vitro and by Acinetobacter baylyi colonizing rodents in vivo.	Nordgard L, Nguyen T, Midtvedt T, Benno Y, Traavik T, Nielsen KM	Environ Biosafety Res	10.1051/ebr:2007029	2007	*
Metabolism	An assessment of the potential of herbivorous insect gut bacteria to develop competence for natural transformation.	Ray JL, Andersen HK, Young S, Nielsen KM, O'Callaghan M	Environ Biosafety Res	10.1051/ebr:2007032	2007	*
Metabolism	A double kill gene cassette for the positive selection of transforming non-selective DNA segments in Acinetobacter baylyi BD413.	Harms K, de Vries J, Wackernagel W	J Microbiol Methods	10.1016/j.mimet.2006.12.006	2006	*
Pathogenicity	The thin pili of Acinetobacter sp. strain BD413 mediate adhesion to biotic and abiotic surfaces.	Gohl O, Friedrich A, Hoppert M, Averhoff B	Appl Environ Microbiol	10.1128/AEM.72.2.1394-1401.2006	2006	*
Phylogeny	Experimental methods for assaying natural transformation and inferring horizontal gene transfer.	Ray JL, Nielsen KM	Methods Enzymol	10.1016/S0076-6879(05)95026-X	2005	*
Pathogenicity	Acinetobacter baylyi Strain BD413 Can Acquire an Antibiotic Resistance Gene by Natural Transformation on Lettuce Phylloplane and Enter the Endosphere.	Riva V, Patania G, Riva F, Vergani L, Crotti E, Mapelli F	Antibiotics (Basel)	10.3390/antibiotics11091231	2022	*
	Transformation of Acinetobacter baylyi in non-sterile soil using recombinant plant nuclear DNA.	Simpson DJ, Fry JC, Rogers HJ, Day MJ	Environ Biosafety Res	10.1051/ebr:2007024	2007	*
	Screening of rhizosphere and soil bacteria for transformability.	Richter B, Smalla K	Environ Biosafety Res	10.1051/ebr:2007035	2007	*
	Influence of flanking homology and insert size on the transformation frequency of Acinetobacter baylyi BD413.	Simpson DJ, Dawson LF, Fry JC, Rogers HJ, Day MJ	Environ Biosafety Res	10.1051/ebr:2007027	2007	*

References

#17540

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24193

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Acinetobacter baylyi ADP1 ADP1

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