Acinetobacter baylyi (DSM 14961, CIP 107474, CCUG 50765)

Name: Acinetobacter baylyi (DSM 14961, CIP 107474, CCUG 50765)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8126

Type strain

Strain Designation B2

Culture col. no. DSM 14961 CIP 107474 CCUG 50765 CCM 7195 B2

NCBI tax ID(s) 1120924 202950

Special Collections DSMZ CCUG CIP

History DSMZ <- P. Kämpfer, University Giessen, Germany; B2 <- A. Hoogenraad CIP <- 2002, P. Kämpfer, Univ., Giessen, Germany: strain B2 CIP <- 2002, P. Kämpfer, Giessen Univ., Giessen, Germany: strain B2

Links

Acinetobacter baylyi B2 is an aerobe, Gram-negative, oval-shaped bacterium that was isolated from activated sludge.

Gram-negative oval-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 113562

DSM 14961,CIP 107474,CCM 7195,KCTC 12413,CCUG 50765,LMG 24678

@ref 20215

Last LPSN update 2026-05-29 08:26:48

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Acinetobacter

Species Acinetobacter baylyi

Full scientific name Acinetobacter baylyi Carr et al. 2003

BacDive ID	Other strains from **Acinetobacter baylyi** (3)	Type strain
8125	A. baylyi A7, DSM 14959, CIP 107476
8127	A. baylyi C5, DSM 14963, CIP 107473
8128	A. baylyi ADP1, BD413, DSM 24193, ATCC 33305

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
116768	negative	oval-shaped
125438	negative			100

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Incubation period
5636	gamma	0	1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5636	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
5636	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
42142	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116768	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5636	positive	growth	30
42142	positive	growth	30
58978	positive	growth	30-37
116768	positive	growth	10-41
116768	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
58978	aerobe
116768	obligate aerobe
125439	obligate aerobe	98.886

Spore formation

@ref	Spore formation	Confidence
125439		94.939
125438		94.95

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116768	NaCl	positive	growth	0-4 %
116768	NaCl		growth	6 %
116768	NaCl		growth	8 %
116768	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
116768	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
116768	17234 ChEBI	glucose	+/-	degradation
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
116768	17632 ChEBI	nitrate	-	reduction
116768	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
116768	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116768	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
116768	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
116768	15688 ChEBI	acetoin		-
116768	17234 ChEBI	glucose			-
68369	35581 ChEBI	indole	-			from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
116768	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
5636	catalase	+	1.11.1.6
116768	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
5636	cytochrome-c oxidase	-	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116768	gamma-glutamyltransferase	+	2.3.2.2
116768	gelatinase	-
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116768	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
116768	urease	+	3.5.1.5
68369	urease	+	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116768	-	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
5636	-	-	+/-	-	+	-	-	-	+	-	-	-	-	-	+/-	+	+	+	+	-	-
5636	-	-	+	-	+	-	-	-	+	-	-	-	-	-	+/-	+	+	+	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116768	not determinedn.d.	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	-	+	-	-	+	-	+	+	+	-	+	+	-	-	-	-	-	-	-	+	+	+	+	+	+	-	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Activated sludge

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
5636	activated sludge	Victoria	Australia	AUS	Australia and Oceania
58978	Activated sludge
116768	Environment, Bendigo waste water treatment plant	Victoria	Australia	AUS	Australia and Oceania	1995

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5636	1	Risk group (German classification) According to TRBA 466
116768	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Acin_bayl_CIP_107474_V1 assembly for Acinetobacter baylyi DSM 14961 = CIP 107474	scaffold	GCA_000368685	1120924.3	2565956683	1120924	75.76
66792	ASM62104v1 assembly for Acinetobacter baylyi DSM 14961 = CIP 107474	scaffold	GCA_000621045	1120924.5	2556921654	1120924	73.02

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5636	Acinetobacter baylyi strain DSM14961 16S ribosomal RNA gene, partial sequence	EF611407	453		1120924

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acin_bayl_CIP_107474_V1 assembly for Acinetobacter baylyi DSM 14961 = CIP 107474
BV-BRC: 1120924.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.89	no
125439	gram_stain	BacteriaNetⓘ	negative	69.46	no
125439	motility	BacteriaNetⓘ	yes	42.74	no
125439	spore_formation	BacteriaNetⓘ	no	94.94	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acinetobacter baylyi DSM 14961 = CIP 107474 CIP 107474
NCBI: GCA_000368685.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	98.02	no
125438	aerobic	aerobicⓘ	yes	88.80	yes
125438	spore-forming	spore-formingⓘ	no	94.95	no
125438	thermophilic	thermophileⓘ	no	98.25	yes
125438	flagellated	motile2+ⓘ	no	75.57	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	FimX regulates type IV pilus localization via the Pil-Chp chemosensory system in Acinetobacter baylyi.	Ellison TJ, Yen IY, Howell PL, Ellison CK.	Mol Biol Cell	10.1091/mbc.e25-05-0242	2025
	Engineered Acinetobacter baylyi ADP1-ISx Cells Are Sensitive DNA Biosensors for Antibiotic Resistance Genes and a Fungal Pathogen of Bats.	Chuong J, Brown KW, Gifford I, Mishler DM, Barrick JE.	ACS Synth Biol	10.1021/acssynbio.5c00360	2025
	A consortium-based approach to adaptive laboratory evolution of Acinetobacter baylyi ADP1 reveals novel genetic targets for lignin valorization.	Maiti S, Singh P, Prasad J V, Muthukrishnan AB, Blank LM, Jayaraman G.	J Appl Microbiol	10.1093/jambio/lxaf138	2025
	Microbial diversity in cutaneous leishmaniasis lesions and potential implications for disease progression and treatment outcomes.	Gunathilaka N, Siriwardana T, Erathna S, Rodrigo W, Gunasekara H, Sumanasena B.	BMC Res Notes	10.1186/s13104-025-07420-y	2025
	In silico analysis of zosurabalpin-LptB2FG binding in Acinetobacter spp., Klebsiella pneumoniae, and Shigella flexneri: mechanisms underlying its differential efficacy.	Magri M, Eljaoudi R, Belyamani L, Ibrahimi A, Bouricha EM.	In Silico Pharmacol	10.1007/s40203-025-00343-3	2025
Genetics	Plasmids affect microindel mutations in Acinetobacter baylyi ADP1.	Liljegren MM, Gama JA, Johnsen PJ, Harms K.	Plasmid	10.1016/j.plasmid.2024.102733	2024
	The recombination initiation functions DprA and RecFOR suppress microindel mutations in Acinetobacter baylyi ADP1.	Liljegren MM, Gama JA, Johnsen PJ, Harms K.	Mol Microbiol	10.1111/mmi.15277	2024
	Prophage induction by non-antibiotic compounds promotes transformation of released antibiotic resistance genes from cell lysis.	Lu J, Guo J.	Water Res	10.1016/j.watres.2024.122200	2024
Genetics	Genome evolution of Acinetobacter baylyi ADP1 during laboratory domestication: acquired mutations impact competence and metabolism.	Gifford I, Vergis MR, Barrick JE.	Appl Environ Microbiol	10.1128/aem.00936-25	2025
	Natural Organic Matter Enhances Natural Transformation of Extracellular Antibiotic Resistance Genes in Sunlit Water.	Liu QH, Yuan L, Li ZH, Leung KMY, Sheng GP.	Environ Sci Technol	10.1021/acs.est.4c08211	2024
	Rapid detection of enterobacteria in wastewater treated by microalgal consortia using loop-mediated isothermal amplification (LAMP).	Cameron H, Bazaes J, Sepulveda C, Riquelme C.	PeerJ	10.7717/peerj.18305	2024
	Microbial Diversity and Resistome in Milk of Cows with Subclinical Mastitis in a Coastal District of Odisha, India.	Sahoo S, Behera MR, Mishra B, Kar S, Sahoo P, Sahoo N, Biswal S.	Indian J Microbiol	10.1007/s12088-024-01198-6	2024
	Rapid accumulation of fluorophores and fast kill identify drugs with bactericidal effects against Gram-negative bacteria.	Salcedo-Sora JE, Kell DB.	Microbiology (Reading)	10.1099/mic.0.001619	2025
	Phthalates Boost Natural Transformation of Extracellular Antibiotic Resistance Genes through Enhancing Bacterial Motility and DNA Environmental Persistence.	Wu J, Lv YH, Sun D, Zhou JH, Wu J, He RL, Liu DF, Song H, Li WW.	Environ Sci Technol	10.1021/acs.est.4c02751	2024
	Effect of chemotherapeutic agents on natural transformation frequency in Acinetobacter baylyi.	Winter M, Vos M, Buckling A, Johnsen PJ, Harms K.	Access Microbiol	10.1099/acmi.0.000733.v4	2024
Genetics	Overproduction, purification, and transcriptional activity of recombinant Acinetobacter baylyi ADP1 RNA polymerase holoenzyme.	Calil Brondani J, Afful D, Nune H, Hart J, Cook S, Momany C.	Protein Expr Purif	10.1016/j.pep.2023.106254	2023
	Cis,cis-muconic acid production from lignin related molecules byAcinetobacter baylyi ADP1.	Liu C, Juvonen V, Merilainen E, Efimova E, Luo J, Salmela M, Santala S, Santala V.	Microb Cell Fact	10.1186/s12934-025-02780-3	2025
	Type VI secretion system activity at lethal antibiotic concentrations leads to overestimation of weapon potency.	Smith WPJ, Granato ET.	Microbiology (Reading)	10.1099/mic.0.001600	2025
	Amoxicillin degradation in the heat, light, or heterogeneous catalyst activated persulfate systems: Comparison of kinetics, mechanisms and toxicities.	Zhao J, Sun Y, Zhang BT, Sun X.	J Environ Manage	10.1016/j.jenvman.2023.119386	2023
	Identification and characterization of a novel pathway for aldopentose degradation in Acinetobacter baumannii.	Alberti L, Konig P, Zeidler S, Poehlein A, Daniel R, Averhoff B, Muller V.	Environ Microbiol	10.1111/1462-2920.16471	2023
	Seventeen antibiotic-producing bacteria isolates found across four freshwater environments.	Hoffman C, Caracoza E, Kyaw K, Blanke K.	MicroPubl Biol	10.17912/micropub.biology.001353	2024
	Antibiotic concentrations in raw hospital wastewater surpass minimal selective and minimum inhibitory concentrations of resistant Acinetobacter baylyi strains.	Schuster D, Axtmann K, Holstein N, Felder C, Voigt A, Farber H, Ciorba P, Szekat C, Schallenberg A, Bockmann M, Zarfl C, Neidhofer C, Smalla K, Exner M, Bierbaum G.	Environ Microbiol	10.1111/1462-2920.16206	2022
	Improved DNA binding to a type IV minor pilin increases natural transformation.	Ellison TJ, Ellison CK.	Nucleic Acids Res	10.1093/nar/gkaf467	2025
	Neglected Drivers of Antibiotic Resistance: Survival of Extended-Spectrum beta-Lactamase-Producing Pathogenic Escherichia coli from Livestock Waste through Dormancy and Release of Transformable Extracellular Antibiotic Resistance Genes under Heat Treatment.	Wang F, Fu Y, Lin Z, Zhang B, Se J, Guo X, Fan J, Jia Y, Xu X, Jiang Y, Shen C.	Environ Sci Technol	10.1021/acs.est.3c02377	2023
	Recurrence and propagation of past functions through mineral facilitated horizontal gene transfer.	Verma T, Hendiani S, Carbajo C, Andersen SB, Hammarlund EU, Burmolle M, Sand KK.	Front Microbiol	10.3389/fmicb.2024.1449094	2024
	Evolution recovers the fitness of Acinetobacter baylyi strains with large deletions through mutations in deletion-specific targets and global post-transcriptional regulators.	Gifford I, Suarez GA, Barrick JE.	PLoS Genet	10.1371/journal.pgen.1011306	2024
	A-to-I mRNA editing recodes hundreds of genes in dozens of species and produces endogenous protein isoforms in bacteria.	Elias E, Gifford I, Didi L, Fargeon O, Arad D, Cohen-Pavon R, Sorek G, Levin L, Melamed D, Aspit L, Barrick JE, Bar-Yaacov D.	Nucleic Acids Res	10.1093/nar/gkaf656	2025
	Periplasmic dehydroshikimate dehydratase combined with quinate oxidation in Gluconobacter oxydans for protocatechuate production.	Nagaki K, Kataoka N, Theeragool G, Matsutani M, Ano Y, Matsushita K, Yakushi T.	Biosci Biotechnol Biochem	10.1093/bbb/zbac090	2022
Metabolism	Azotobacter vinelandii as a Nitrogen-Negative Chassis for Bio-Oil and Bio-Wax Production of Heterologous and Native Lipids.	Barney BM, Camur BB, Stolp LJ, Mancipe NC, Dietz BR.	Microbiologyopen	10.1002/mbo3.70047	2025
	Differentiating Ocular Pathogenic Staphylococcus epidermidis Isolates Using a Human Corneal Epithelial Cell Coculture Model.	Chen Q, Wei Y, Pang J, Wei Z, Peng Y, Qudsi AI, Zhang Z, Lu X, Wang Z, Zhang Y, Chen K, Liang Q.	Transl Vis Sci Technol	10.1167/tvst.14.11.21	2025
	Simultaneous determination of heavy metal concentrations and toxicities by diffusive gradient in thin films containing Acinetobacter whole-cell bioreporters (Bio-DGT).	Wu S, Li H, Zhang D, Zhang H.	Environ Pollut	10.1016/j.envpol.2023.121050	2023
	Investigating novel Streptomyces bacteriophage endolysins as potential antimicrobial agents.	Maneekul J, Chiaha A, Hughes R, Labry F, Saito J, Almendares M, Banda BN, Lopez L, McGaskey N, Miranda M, Rana J, Zadeh BR, Hughes LE.	Microbiol Spectr	10.1128/spectrum.01170-24	2025
	Biocides used as material preservatives modify rates of de novo mutation and horizontal gene transfer in bacteria.	Schmidt SBI, Rodriguez-Rojas A, Rolff J, Schreiber F.	J Hazard Mater	10.1016/j.jhazmat.2022.129280	2022
	Visual analysis of multi-omics data.	Swart A, Caspi R, Paley S, Karp PD.	Front Bioinform	10.3389/fbinf.2024.1395981	2024
	In-vitro toxicity assessment of Eucalyptus robusta Smith extracts via whole-cell bioreporter.	Jin N, Liu Y, Wang X, Yang K, Zhang D, Zhang D, Zhang D, Ding A.	Ecotoxicol Environ Saf	10.1016/j.ecoenv.2022.113704	2022
	Evaluating the simulated toxicities of metal mixtures and hydrocarbons using the alkane degrading bioreporter Acinetobacter baylyi ADPWH_recA.	Li H, Yang Y, Zhang D, Li Y, Zhang H, Luo J, Jones KC.	J Hazard Mater	10.1016/j.jhazmat.2021.126471	2021
	Five tree species contained antibiotic-producing bacteria within their bark.	Hoffman C, Blanke K.	MicroPubl Biol	10.17912/micropub.biology.001227	2024
	Novel regulatory mechanism of choline-O-sulfate and choline catabolism by two BetIs in Alphaproteobacteria.	Liu J-R, Li Z-K, Wang M-C, Wang N, Wang Z-Q, Li F-F, Chen Y, Zhang Y-Z, Fu H-H.	Appl Environ Microbiol	10.1128/aem.00333-25	2025
	Engineered bacteria detect tumor DNA.	Cooper RM, Wright JA, Ng JQ, Goyne JM, Suzuki N, Lee YK, Ichinose M, Radford G, Ryan FJ, Kumar S, Thomas EM, Vrbanac L, Knight R, Woods SL, Worthley DL, Hasty J.	Science	10.1126/science.adf3974	2023
	Applying Raman Microspectroscopy to Evaluate the Effects of Nutrient Cations on Alkane Bioavailability to Acinetobacter baylyi ADP1.	Li H, Zhang D, Zhang D, Zhang D, Luo J, Jones KC, Martin FL.	Environ Sci Technol	10.1021/acs.est.0c04944	2020
	Challenges of Using Whole-Cell Bioreporter for Assessment of Heavy Metal Bioavailability in Soil/Sediment.	Bai S, Liu Z, Xu J, Li Y, Zhang Z, Huang Z, Gustave W, Li B, Zhang X, He F.	Biosensors (Basel)	10.3390/bios15040260	2025
	Development of two compatible plasmids to assess sRNA-mediated post-transcriptional regulation in Acinetobacter baumannii.	Mogre A, Connell O, White J, Shaibah A, Hokamp K, Hamrock FJ, Schauer K, Kroger C.	Microbiology (Reading)	10.1099/mic.0.001639	2025
	The Relationship between Microbial Communities in Coffee Fermentation and Aroma with Metabolite Attributes of Finished Products.	Todhanakasem T, Van Tai N, Pornpukdeewattana S, Charoenrat T, Young BM, Wattanachaisaereekul S.	Foods	10.3390/foods13152332	2024
Enzymology	Automating Cloning by Natural Transformation.	Jiang X, Palazzotto E, Wybraniec E, Munro LJ, Zhang H, Kell DB, Weber T, Lee SY.	ACS Synth Biol	10.1021/acssynbio.0c00240	2020
	Lipid production from biofilms of Marinobacter atlanticus in a fixed bed bioreactor.	Yates MD, Mickol RL, Tolsma JS, Beasley M, Shepard J, Glaven SM.	Microb Cell Fact	10.1186/s12934-024-02617-5	2024
	Cardiac disease in the Spix Macaw (Cyanopsitta spixii): two cases.	de Carvalho M, Cunha M, Knobl T, Cirqueira CS, Dias-Neto RN, Serafini PP, Catao-Dias JL, Diaz-Delgado J.	Aust Vet J	10.1111/avj.13097	2021
	Microbial diversity in cutaneous leishmaniasis lesions and potential implications for disease progression and treatment outcomes	Gunathilaka N, Siriwardana T, Erathna S, Rodrigo W, Gunasekara H, Sumanasena B.	BMC Res Notes		2025
	Engineering adipic acid metabolism in Pseudomonas putida.	Ackermann YS, Li WJ, Op de Hipt L, Niehoff PJ, Casey W, Polen T, Kobbing S, Ballerstedt H, Wynands B, O'Connor K, Blank LM, Wierckx N.	Metab Eng	10.1016/j.ymben.2021.05.001	2021
Metabolism	DNA Uptake upon T6SS-Dependent Prey Cell Lysis Induces SOS Response and Reduces Fitness of Acinetobacter baylyi.	Lin L, Ringel PD, Vettiger A, Durr L, Basler M.	Cell Rep	10.1016/j.celrep.2019.09.083	2019
	Construction of the reduced nicotinamide adenine dinucleotide salvage pathway in artificial cells and its application in amino acid synthesis.	Liu Y, Du S, Zhang X, Li C, Li S, Xu W, Zhao J, Mu W, Han X.	Chem Sci	10.1039/d5sc00852b	2025
	Testing for the fitness benefits of natural transformation during community-embedded evolution.	Winter M, Harms K, Johnsen PJ, Buckling A, Vos M.	Microbiology (Reading)	10.1099/mic.0.001375	2023
Pathogenicity	Multiplicity of type 6 secretion system toxins limits the evolution of resistance.	Smith WPJ, Armstrong-Bond E, Coyte KZ, Knight CG, Basler M, Brockhurst MA.	Proc Natl Acad Sci U S A	10.1073/pnas.2416700122	2025
	Horizontal Gene Transfer, Fitness Costs and Mobility Shape the Spread of Antibiotic Resistance Genes into Experimental Populations of Acinetobacter Baylyi.	Sezmis AL, Woods LC, Peleg AY, McDonald MJ.	Mol Biol Evol	10.1093/molbev/msad028	2023
	Acquisition of Extracellular DNA by Acinetobacter baylyi ADP1 in Response to Solar and UV-C_254nm Disinfection.	Augsburger N, Mantilla-Calderon D, Daffonchio D, Hong PY.	Environ Sci Technol	10.1021/acs.est.9b01206	2019
	Directed evolution of hydrocarbon-producing enzymes	Nielsen J, Kennerley J, Huang W.	Biotechnol Biofuels Bioprod		2025
	Subcellular localization of type IV pili regulates bacterial multicellular development.	Ellison CK, Fei C, Dalia TN, Wingreen NS, Dalia AB, Shaevitz JW, Gitai Z.	Nat Commun	10.1038/s41467-022-33564-7	2022
	Short tandem gene duplications as potential agents of genetic memory.	Lee S, Radey M, Singh P, Manoil C.	mBio	10.1128/mbio.02011-25	2025
	Predictions of Immunodominant Epitope Peptides From the AsaA Type VI Secretion System in Acinetobacter baumannii: A Computational Approach.	Ranjan M, Girija ASS, Priyadharsini VJ.	Cureus	10.7759/cureus.59618	2024
	Fate of Extracellular DNA in the Production of Fertilizers from Source-Separated Urine.	Goetsch HE, Love NG, Wigginton KR.	Environ Sci Technol	10.1021/acs.est.9b04263	2020
	Detection of carbapenemases in Enterobacterales and other Gram-negative bacilli recovered from hospital and municipal wastewater in Mexico City.	Urzua-Abad MM, Aquino-Andrade A, Castelan-Vega JA, Merida-Vieyra J, Ribas-Aparicio RM, Belmont-Monroy L, Jimenez-Alberto A, Aparicio-Ozores G.	Sci Rep	10.1038/s41598-024-76824-w	2024
	The molecular basis for DNA-binding by competence T4P is distinct in a representative Gram-positive and Gram-negative species.	Christman ND, Dalia AB.	PLoS Pathog	10.1371/journal.ppat.1013128	2025
	Innovative applications and research advances of bacterial biosensors in medicine.	Liu M, Yang W, Zhu W, Yu D.	Front Microbiol	10.3389/fmicb.2025.1507491	2025
	Enhanced Population Control in a Synthetic Bacterial Consortium by Interconnected Carbon Cross-Feeding.	Losoi PS, Santala VP, Santala SM.	ACS Synth Biol	10.1021/acssynbio.9b00316	2019
Pathogenicity	Initiation of H1-T6SS dueling between Pseudomonas aeruginosa.	George M, Narayanan S, Tejada-Arranz A, Plack A, Basler M.	mBio	10.1128/mbio.00355-24	2024
	Polystyrene-colonizing bacteria are enriched for long-chain alkane degradation pathways.	Hsueh SW, Jian YH, Fugmann SD, Yang SY.	PLoS One	10.1371/journal.pone.0292137	2023
	Interactive antibacterial profile of Moringa oleifera Lam. extracts and conventional antibiotics against bacterial triggers of some autoimmune inflammatory diseases	Ilanko P, McDonnell PA, van Vuuren S, Cock IE.	S Afr J Bot	10.1016/j.sajb.2019.04.008	2019
	Horizontal gene transfer and beyond: the delivery of biological matter by bacterial membrane vesicles to host and bacterial cells.	Wen AX, Herman C.	Curr Opin Microbiol	10.1016/j.mib.2024.102525	2024
Phylogeny	Viable bacterial communities in freshly pumped human milk and their changes during cold storage conditions.	Pivrncova E, Bohm J, Barton V, Klanova J, Borilova Linhartova P.	Int Breastfeed J	10.1186/s13006-025-00738-0	2025
	Acinetobacter baylyi Strain BD413 Can Acquire an Antibiotic Resistance Gene by Natural Transformation on Lettuce Phylloplane and Enter the Endosphere.	Riva V, Patania G, Riva F, Vergani L, Crotti E, Mapelli F.	Antibiotics (Basel)	10.3390/antibiotics11091231	2022
	The Distribution of Carbapenem-Resistant Acinetobacter Species and High Prevalence of CC92 OXA-23-Producing Acinetobacter Baumannii in Community Hospitals in South Korea.	Bae IK, Hong JS.	Infect Drug Resist	10.2147/idr.s459739	2024
	Genetically encoded biosensor enabled mining, characterisation and engineering of aromatic acid MFS transporters.	Roy PL, Chacon M, Dixon N.	J Biol Eng	10.1186/s13036-025-00568-y	2025
Pathogenicity	Succinate, iron chelation, and monovalent cations affect the transformation efficiency of Acinetobacter baylyi ATCC 33305 during growth in complex media.	Leong CG, Boyd CM, Roush KS, Tenente R, Lang KM, Lostroh CP.	Can J Microbiol	10.1139/cjm-2017-0393	2017
	A systematic discussion and comparison of the construction methods of synthetic microbial community.	Li C, Han Y, Zou X, Zhang X, Ran Q, Dong C.	Synth Syst Biotechnol	10.1016/j.synbio.2024.06.006	2024
	Modular Combinatorial DNA Assembly of Group B Streptococcus Capsular Polysaccharide Biosynthesis Pathways to Expediate the Production of Novel Glycoconjugate Vaccines.	Harrison MA, Atkins E, Faulds-Pain A, Heap JT, Wren BW, Passmore IJ.	Vaccines (Basel)	10.3390/vaccines13030279	2025
	Genome-scale analysis of essential gene knockout mutants to identify an antibiotic target process.	Bailey J, Gallagher L, Manoil C.	Antimicrob Agents Chemother	10.1128/aac.01102-23	2023
	Qualitative and Quantitative Analysis of the Major Bioactive Components of Juniperus chinensis L. Using LC-QTOF-MS and LC-MSMS and Investigation of Antibacterial Activity against Pathogenic Bacteria.	Lim DJ, Song JS, Lee BH, Son YK, Kim Y.	Molecules	10.3390/molecules28093937	2023
	The WSD-type wax ester synthase is widely conserved in streptophytes and crucial for floral organ formation under high humidity in land plants.	Nobusawa T, Sasaki-Sekimoto Y, Ohta H, Kusaba M.	J Plant Res	10.1007/s10265-025-01628-6	2025
Metabolism	Evaluation of thioesterases from Acinetobacter baylyi for production of free fatty acids.	Ukey R, Holmes WE, Bajpai R, Chistoserdov AY.	Can J Microbiol	10.1139/cjm-2016-0458	2017
Biotechnology	Specific chromogenic assay for detection of hippuricase-positive bacteria and its validation in raw chicken meat samples.	Yao C, Schmid A, Faccio G, Spitz U, Jovanovic V, Vasovic T, Velickovic TC.	Sci Rep	10.1038/s41598-025-24981-x	2025
	Quantification of Chemotaxis-Related Alkane Accumulation in Acinetobacter baylyi Using Raman Microspectroscopy.	Li H, Martin FL, Zhang D, Zhang D, Zhang D.	Anal Chem	10.1021/acs.analchem.6b02297	2017
Metabolism	Chromium resistance genetic element flanked by XerC/XerD recombination sites and its distribution in environmental and clinical Acinetobacter strains.	Mindlin S, Petrenko A, Petrova M.	FEMS Microbiol Lett	10.1093/femsle/fny047	2018
	Photo-antimicrobial efficacy of zinc complexes of porphyrin and phthalocyanine activated by inexpensive consumer LED lamp.	George L, Hiltunen A, Santala V, Efimov A.	J Inorg Biochem	10.1016/j.jinorgbio.2018.03.015	2018
	Gene amplification mutations originate prior to selective stress in Acinetobacter baylyi.	Herrmann JA, Koprowska A, Winters TJ, Villanueva N, Nikityuk VD, Pek F, Reis EM, Dominguez CZ, Davis D, McPherson E, Rocco SR, Recendez C, Difuntorum SM, Faeth K, Lopez MD, Awwad HM, Ghobashy RA, Cappiello L, Neidle EL, Quinones-Soto S, Reams AB.	G3 (Bethesda)	10.1093/g3journal/jkac327	2023
	Application of a bacterial whole cell biosensor for the rapid detection of cytotoxicity in heavy metal contaminated seawater.	Cui Z, Luan X, Jiang H, Li Q, Xu G, Sun C, Zheng L, Song Y, Davison PA, Huang WE.	Chemosphere	10.1016/j.chemosphere.2018.02.097	2018
	Swarming bacteria exhibit developmental phase transitions to establish scattered colonies in new regions.	Zdimal AM, Di Dio G, Liu W, Aftab T, Collins T, Colin R, Shrivastava A.	ISME J	10.1093/ismejo/wrae263	2025
	Production of long chain alkyl esters from carbon dioxide and electricity by a two-stage bacterial process.	Lehtinen T, Efimova E, Tremblay PL, Santala S, Zhang T, Santala V.	Bioresour Technol	10.1016/j.biortech.2017.06.073	2017
	Engineered Cell Line Imaging Assay Differentiates Pathogenic from Non-Pathogenic Bacteria.	Phillips SMB, Bergstrom C, Walker B, Wang G, Alfaro T, Stromberg ZR, Hess BM.	Pathogens	10.3390/pathogens11020209	2022
Enzymology	Production of lipolytic enzymes by bacteria isolated from biological effluent treatment systems.	Furini G, Berger JS, Campos JAM, Sand STV, Germani JC.	An Acad Bras Cienc	10.1590/0001-3765201820170952	2018
	Open-set deep learning-enabled single-cell Raman spectroscopy for rapid identification of airborne pathogens in real-world environments.	Zhu L, Yang Y, Xu F, Lu X, Shuai M, An Z, Chen X, Li H, Martin FL, Vikesland PJ, Ren B, Tian ZQ, Zhu YG, Cui L.	Sci Adv	10.1126/sciadv.adp7991	2025
	The periplasmic protein HslJ is the first-line of defense against oxidative stress in Acinetobacter baumannii.	Scribano D, Pasqua M, Limongi D, Nencioni L, Palamara AT, Ambrosi C.	Biol Res	10.1186/s40659-025-00584-8	2025
	Prevalent emergence of reciprocity among cross-feeding bacteria.	Giri S, Yousif G, Shitut S, Ona L, Kost C.	ISME Commun	10.1038/s43705-022-00155-y	2022
Metabolism	Infections as ecosystems: community metabolic interactions in microbial pathogenesis.	Adekoya AE, West SR, Arriaga SK, Ibberson CB.	Infect Immun	10.1128/iai.00530-24	2025
	Hyperpiliation, not loss of pilus retraction, reduces Pseudomonas aeruginosa pathogenicity.	Kilmury SLN, Graham KJ, Lamers RP, MacNeil LT, Burrows LL.	Microbiol Spectr	10.1128/spectrum.02558-24	2025
Pathogenicity	Mystique, a broad host range Acinetobacter phage, reveals the impact of culturing conditions on phage isolation and infectivity.	Alseth EO, Roush C, Irby I, Kopylov M, Bobe D, Diggs MW, Nguyen K, Xu H, Schmidt-Krey I, Bryksin AV, Rather PN.	PLoS Pathog	10.1371/journal.ppat.1012986	2025
	Heptavalent O-Antigen Bioconjugate Vaccine Exhibiting Differential Functional Antibody Responses Against Diverse Klebsiella pneumoniae Isolates.	Wantuch PL, Knoot CJ, Robinson LS, Vinogradov E, Scott NE, Harding CM, Rosen DA.	J Infect Dis	10.1093/infdis/jiae097	2024
	Individual-based modeling unravels spatial and social interactions in bacterial communities.	Wang J, Hashem I, Bhonsale S, F M Van Impe J.	ISME J	10.1093/ismejo/wraf116	2025
	A case of humidifier lung with a difficult differential diagnosis from COVID-19.	Ono M, Nagatomo Y, Kinoshita H, Takeda Y, Nakamura H, Aoshiba K.	Oxf Med Case Reports	10.1093/omcr/omab100	2021
Metabolism	Acinetobacter baylyi regulates type IV pilus synthesis by employing two extension motors and a motor protein inhibitor.	Ellison CK, Dalia TN, Klancher CA, Shaevitz JW, Gitai Z, Dalia AB.	Nat Commun	10.1038/s41467-021-24124-6	2021
	T6SS-mediated competition by Stenotrophomonas rhizophila shapes seed-borne bacterial communities and seed-to-seedling transmission dynamics.	Garin T, Brault A, Marais C, Briand M, Preveaux A, Bonneau S, Simonin M, Barret M, Sarniguet A.	mSystems	10.1128/msystems.00457-25	2025
	Impact of Natural Transformation on the Acquisition of Novel Genes in Bacteria.	Mazzamurro F, Touchon M, Charpentier X, Rocha EPC.	Mol Biol Evol	10.1093/molbev/msaf192	2025
	Evolution in response to prophage activation attenuates the virulence of culturable Serratia symbiotica relatives of aphid endosymbionts.	VanDieren AJ, Barrick JE.	mBio	10.1128/mbio.02041-25	2025
	Hospital Reservoirs of Multidrug Resistant Acinetobacter Species-The Elephant in the Room!	Fahy S, O'Connor JA, Lucey B, Sleator RD.	Br J Biomed Sci	10.3389/bjbs.2023.11098	2023
Metabolism	Trehalose, a temperature- and salt-induced solute with implications in pathobiology of Acinetobacter baumannii.	Zeidler S, Hubloher J, Schabacker K, Lamosa P, Santos H, Muller V.	Environ Microbiol	10.1111/1462-2920.13987	2017
Metabolism	Osmotic stress response in Acinetobacter baylyi: identification of a glycine-betaine biosynthesis pathway and regulation of osmoadaptive choline uptake and glycine-betaine synthesis through a choline-responsive BetI repressor.	Scholz A, Stahl J, de Berardinis V, Muller V, Averhoff B.	Environ Microbiol Rep	10.1111/1758-2229.12382	2016
	Use of zebrafish to identify host responses specific to type VI secretion system mediated interbacterial antagonism.	Virgo M, Mostowy S, Ho BT.	PLoS Pathog	10.1371/journal.ppat.1012384	2024
	Potential role of alginate in marine bacteria-yeast interactions.	Nakata S, Takase R, Kawai S, Ogura K, Hashimoto W.	Appl Environ Microbiol	10.1128/aem.01683-24	2024
	Modular multi-enzyme cascades enable green and sustainable synthesis of non-canonical amino acids from glycerol.	Xu S, Wang SH, Lou LW, Ji Y, Schwaneberg U, Li ZM, Cheng F, Li ZL.	Nat Commun	10.1038/s41467-025-63341-1	2025
Pathogenicity	Tn1 transposition in the course of natural transformation enables horizontal antibiotic resistance spread in Acinetobacter baylyi.	Kloos J, Johnsen PJ, Harms K.	Microbiology (Reading)	10.1099/mic.0.001003	2021
	Degradation of Extracellular Antibiotic Resistance Genes with UV₂₅₄ Treatment.	Chang PH, Juhrend B, Olson TM, Marrs CF, Wigginton KR.	Environ Sci Technol	10.1021/acs.est.7b01120	2017
	Fully biological production of adipic acid analogs from branched catechols.	Kruyer NS, Wauldron N, Bommarius AS, Peralta-Yahya P.	Sci Rep	10.1038/s41598-020-70158-z	2020
Pathogenicity	Mechanisms of bacterial immunity, protection, and survival during interbacterial warfare.	Kennedy NW, Comstock LE.	Cell Host Microbe	10.1016/j.chom.2024.05.006	2024
	CsrA-mediated regulation of a virulence switch in Acinetobacter baumannii.	Singh R, Perez-Varela M, Colquhoun JM, Kroger C, Hamrock FJ, Shaibah A, Neidle EL, Rather PN.	mBio	10.1128/mbio.04058-24	2025
	Survival Strategies of Staphylococcus aureus: Adaptive Regulation of the Anti-Restriction Gene ardA-H1 Under Stress Conditions.	de Andrade FCC, Carvalho MF, Figueiredo AMS.	Antibiotics (Basel)	10.3390/antibiotics13121131	2024
	Use of a whole-cell bioreporter, Acinetobacter baylyi, to estimate the genotoxicity and bioavailability of chromium(VI)-contaminated soils	Jiang B, Zhu D, Song Y, Zhang D, Liu Z, Zhang X, Huang WE, Li G.	Biotechnol Lett		2015
	The role of PilU in the surface behaviors of Pseudomonas aeruginosa.	Zhang J, Luo Y, Zong Y, Lu S, Shi Y, Jin F, Zhao K.	mLife	10.1002/mlf2.12165	2025
	Phylogenetic analysis and interactomics study unveil gene co-optive evolution of LysR-type transcription regulators across non-pathogenic, opportunistic, and pathogenic mycobacteria.	Tyagi E, Singhvi N, Keshavam CC, Sangwan N, Gupta V, Bhimwal T, Seth R, Seth RK, Singh Y.	3 Biotech	10.1007/s13205-023-03583-2	2023
	Extracellular vesicles of minimalistic Mollicutes as mediators of immune modulation and horizontal gene transfer.	Wagner TM, Torres-Puig S, Yimthin T, Irobalieva RN, Heller M, Kaessmeyer S, Demoulins T, Jores J.	Commun Biol	10.1038/s42003-025-08099-4	2025
	The mismatch repair system (mutS and mutL) in Acinetobacter baylyi ADP1.	Zhou H, Zhang L, Xu Q, Zhang L, Yu Y, Hua X.	BMC Microbiol	10.1186/s12866-020-01729-3	2020
	Analysis of Acinetobacter P-type type IV secretion system-encoding plasmid diversity uncovers extensive secretion system conservation and diverse antibiotic resistance determinants.	Oke MT, Martz K, Mocanita M, Knezevic S, D'Costa VM.	Antimicrob Agents Chemother	10.1128/aac.01038-24	2024
	Pneumococcal extracellular vesicles mediate horizontal gene transfer via the transformation machinery.	Werner Lass S, Smith BE, Camphire S, Eutsey RA, Prentice JA, Yerneni SS, Arun A, Bridges AA, Rosch JW, Conway JF, Campbell P, Hiller NL.	mSphere	10.1128/msphere.00727-24	2024
Metabolism	Contact-Dependent Growth Inhibition Proteins in Acinetobacter baylyi ADP1.	De Gregorio E, Esposito EP, Zarrilli R, Di Nocera PP.	Curr Microbiol	10.1007/s00284-018-1540-y	2018
	Evaluation of the efficiency of various methods to load fluoroquinolones into Escherichia coli outer membrane vesicles as a novel antibiotic delivery platform.	Wu M, Holgado L, Harrower RM, Brown AC.	Biochem Eng J	10.1016/j.bej.2024.109418	2024
Metabolism	Use of a whole-cell bioreporter, Acinetobacter baylyi, to estimate the genotoxicity and bioavailability of chromium(VI)-contaminated soils.	Jiang B, Zhu D, Song Y, Zhang D, Liu Z, Zhang X, Huang WE, Li G.	Biotechnol Lett	10.1007/s10529-014-1674-3	2015
	Unusual features of the sequences of copies of the 16S-23S rRNA internal transcribed spacer regions of Acinetobacter bereziniae, Acinetobacter guillouiae and Acinetobacter baylyi arise from horizontal gene transfer events.	Maslunka C, Gurtler V, Seviour R.	Microbiology (Reading)	10.1099/mic.0.083600-0	2015
Metabolism	Arginine utilization in Acinetobacter baumannii is essential for pneumonia pathogenesis and is regulated by virulence regulator GacA.	Devnath K, Pathak A, Bakht P, Pathania R.	Infect Immun	10.1128/iai.00572-24	2025
Biotechnology	Dietary microbiota-mediated shifts in gut microbial ecology and pathogen interactions in giant pandas (Ailuropoda melanoleuca)	Yan Z, Yao Y, Xu Q, He X, Zhou X, Wang H.	Commun Biol		2025
Genetics	Pseudosulfitobacter pseudonitzschiae hitchhikes on gliding colonies of Cellulophaga lytica.	Gavriilidou A, Murace M, Portoghese M, Schouten S, Hamidjaja R, Escobar Doncel A, Boeren S, Giesbers M, Capoulade J, Vignolini S, Smidt H, Ingham CJ.	ISME Commun	10.1093/ismeco/ycaf118	2025
Metabolism	A mechanistic study on SMOB-ADP1: an NADH:flavin oxidoreductase of the two-component styrene monooxygenase of Acinetobacter baylyi ADP1.	Groning JA, Kaschabek SR, Schlomann M, Tischler D.	Arch Microbiol	10.1007/s00203-014-1022-y	2014
	Acquisition of novel antibiotic resistance genes by the bacterial predator Bacteriovorax sp. As-1.	Kohadie FB, Heo YU, Mun W, Choi S, Park S, Lee Y, Kim DH, Mitchell RJ.	ISME J	10.1093/ismejo/wraf245	2025
Pathogenicity	Horizontal Gene Transfer of Antibiotic Resistance from Acinetobacter baylyi to Escherichia coli on Lettuce and Subsequent Antibiotic Resistance Transmission to the Gut Microbiome.	Maeusli M, Lee B, Miller S, Reyna Z, Lu P, Yan J, Ulhaq A, Skandalis N, Spellberg B, Luna B.	mSphere	10.1128/msphere.00329-20	2020
Enzymology	Improved furfural tolerance in Escherichia coli mediated by heterologous NADH-dependent benzyl alcohol dehydrogenases.	Willson BJ, Herman R, Langer S, Thomas GH.	Biochem J	10.1042/bcj20210811	2022
	The characterization of outer membrane vesicles (OMVs) and their role in mediating antibiotic-resistance gene transfer through natural transformation in Riemerella anatipestifer.	Wang M, Yao Y, Yang Y, Zhu D, Wang M, Jia R, Chen S, Zhao X, Yang Q, Wu Y, Zhang S, Huang J, Ou X, Tian B, Sun D, Zhang L, Yu Y, He Y, Wu Z, Cheng A, Liu M.	Poult Sci	10.1016/j.psj.2024.104730	2025
	Metabolic strategies that enable oral commensal persistence in a lower airway environment.	Toney AM, Koirala J, Stacy A.	mBio	10.1128/mbio.01948-25	2025
	A Genetically Encoded Biosensor for the Detection of Levulinic Acid.	Kim TH, Woo SG, Kim SK, Yoo BH, Shin J, Rha E, Kim SJ, Kwon KK, Lee H, Kim H, Kim HT, Sung BH, Lee SG, Lee DH.	J Microbiol Biotechnol	10.4014/jmb.2301.01021	2023
	The Gut Microbiota and Colorectal Cancer: Understanding the Link and Exploring Therapeutic Interventions.	Zalila-Kolsi I, Dhieb D, Osman HA, Mekideche H.	Biology (Basel)	10.3390/biology14030251	2025
	Genomic Characterization of Mobile Genetic Elements Associated with Multidrug-Resistant Acinetobacter Non-baumannii Species from Southern Thailand.	Yaikhan T, Chukamnerd A, Singkhamanan K, Nokchan N, Chintakovid N, Chusri S, Pomwised R, Wonglapsuwan M, Surachat K.	Antibiotics (Basel)	10.3390/antibiotics13020149	2024
	Removal of aromatic inhibitors produced from lignocellulosic hydrolysates by Acinetobacter baylyi ADP1 with formation of ethanol by Kluyveromyces marxianus.	Singh A, Bedore SR, Sharma NK, Lee SA, Eiteman MA, Neidle EL.	Biotechnol Biofuels	10.1186/s13068-019-1434-7	2019
	Production of Single-Cell Oil from a Local Isolate Bacillus subtilis Using Palm Fronds.	Al-Obeidi WDM, Al-Rawi DF, Ali LH.	Int J Biomater	10.1155/2023/8882842	2023
Metabolism	Metabolic engineering of Escherichia coli BL21 strain using simplified CRISPR-Cas9 and asymmetric homology arms recombineering.	Shukal S, Lim XH, Zhang C, Chen X.	Microb Cell Fact	10.1186/s12934-022-01746-z	2022
	Naturally competent bacteria and their genetic parasites-a battle for control over horizontal gene transfer?	Vesel N, Stare E, Stefanic P, Floccari VA, Mandic-Mulec I, Dragos A.	FEMS Microbiol Rev	10.1093/femsre/fuaf035	2025
Transcriptome	Sub-MIC Antibiotics Modulate Productions of Outer Membrane Vesicles in Tigecycline-Resistant Escherichia coli.	Li Q, Li J, He T, Ji X, Wei R, Yu M, Wang R.	Antibiotics (Basel)	10.3390/antibiotics13030276	2024
Metabolism	Phage T4-induced DNA breaks activate a tRNA repair-defying anticodon nuclease.	Bitton L, Klaiman D, Kaufmann G.	Mol Microbiol	10.1111/mmi.13074	2015
	Intestinal dysbiosis associated with non-nutritive sweeteners intake: an effect without a cause?	Marongiu L, Brzozowska E, Hetjens S, Hoelzle LE, Venturelli S.	Front Nutr	10.3389/fnut.2025.1694264	2025
Pathogenicity	Plasmid-mediated fitness advantage of Acinetobacter baylyi in sulfadiazine-polluted soil.	Jechalke S, Kopmann C, Richter M, Moenickes S, Heuer H, Smalla K.	FEMS Microbiol Lett	10.1111/1574-6968.12284	2013
Enzymology	Assessment of bacterial acyltransferases for an efficient lipid production in metabolically engineered strains of E. coli.	Rottig A, Zurek PJ, Steinbuchel A.	Metab Eng	10.1016/j.ymben.2015.09.016	2015
	Insufficient Evidence of a Breastmilk Microbiota at Six-Weeks Postpartum: A Pilot Study.	Leech SM, Gilbert MC, Clifton VL, Kumar S, Rae KM, Borg D, Dekker Nitert M.	Nutrients	10.3390/nu15030696	2023
	Effects of Salts and Other Contaminants on Ciprofloxacin Removal Efficiency of Green Synthesized Copper Nanoparticles.	Sassa-Deepaeng T, Khumpirapang N, Yodthong W, Myat YY, Anuchapreeda S, Okonogi S.	Vet Sci	10.3390/vetsci11040179	2024
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Metabolism	Identification of an osmo-dependent and an osmo-independent choline transporter in Acinetobacter baylyi: implications in osmostress protection and metabolic adaptation.	Sand M, Stahl J, Waclawska I, Ziegler C, Averhoff B.	Environ Microbiol	10.1111/1462-2920.12188	2014
	Resistance mechanisms for Gram-negative bacteria-specific lipopeptides, turnercyclamycins, differ from that of colistin.	Lim AL, Miller BW, Lin Z, Fisher MA, Barrows LR, Haygood MG, Schmidt EW.	Microbiol Spectr	10.1128/spectrum.02306-23	2023
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Metabolism	Structure and biosynthesis of fimsbactins A-F, siderophores from Acinetobacter baumannii and Acinetobacter baylyi.	Proschak A, Lubuta P, Grun P, Lohr F, Wilharm G, De Berardinis V, Bode HB.	Chembiochem	10.1002/cbic.201200764	2013
	Kinetic Modeling and Biological Activities of Rosa canina L. Pseudo-Fruit Extracts Obtained via Enzyme-Assisted Extraction.	Lemoni Z, Kalantzi S, Lymperopoulou T, Tzani A, Stavropoulos G, Detsi A, Mamma D.	Antioxidants (Basel)	10.3390/antiox14050558	2025
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Metabolism	Mannitol, a compatible solute synthesized by Acinetobacter baylyi in a two-step pathway including a salt-induced and salt-dependent mannitol-1-phosphate dehydrogenase.	Sand M, Mingote AI, Santos H, Muller V, Averhoff B.	Environ Microbiol	10.1111/1462-2920.12090	2013
	The response to desiccation in Acinetobacter baumannii.	Lucidi M, Capecchi G, Spagnoli C, Basile A, Artuso I, Persichetti L, Fardelli E, Capellini G, Visaggio D, Imperi F, Rampioni G, Leoni L, Visca P.	Virulence	10.1080/21505594.2025.2490209	2025
	Customization of Ethylene Glycol (EG)-Induced BmoR-Based Biosensor for the Directed Evolution of PET Degrading Enzymes.	Li M, Chen Z, Zhang W, Wu T, Qi Q, Huo YX.	Adv Sci (Weinh)	10.1002/advs.202413205	2025
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	The Agrobacterium fabrum efflux pump PecM is produced in response to the plant exudate 4-hydroxybenzaldehyde to avoid disruption of central metabolism.	Ghosh A, Grove A.	J Bacteriol	10.1128/jb.00150-25	2025
Metabolism	Functional roles of Tryptophan residues in diketoreductase from Acinetobacter baylyi.	Huang Y, Lu Z, Ma M, Liu N, Chen Y.	BMB Rep	10.5483/bmbrep.2012.45.8.064	2012
Genetics	RB-TnSeq elucidates dicarboxylic-acid-specific catabolism in beta-proteobacteria for improved plastic monomer upcycling.	Pearson AN, Lynch JM, Ho CN, Hudson GA, Roberts JB, Menasalvas J, Vilchez AA, Incha MR, Schmidt M, Mukhopadhyay A, Deutschbauer AM, Thompson MG, Shih PM, Keasling JD.	Appl Environ Microbiol	10.1128/aem.00924-25	2025
Genetics	Genome reduction in Paenibacillus polymyxa DSM 365 for chassis development.	Ravagnan G, Lesemann J, Muller MF, Poehlein A, Daniel R, Noack S, Kabisch J, Schmid J.	Front Bioeng Biotechnol	10.3389/fbioe.2024.1378873	2024
	Preparation of a Klebsiella pneumoniae conjugate nanovaccine using glycol-engineered Escherichia coli.	Liu Y, Pan C, Wang K, Guo Y, Sun Y, Li X, Sun P, Wu J, Wang H, Zhu L.	Microb Cell Fact	10.1186/s12934-023-02099-x	2023
Genetics	Essential gene knockdowns reveal genetic vulnerabilities and antibiotic sensitivities in Acinetobacter baumannii.	Ward RD, Tran JS, Banta AB, Bacon EE, Rose WE, Peters JM.	mBio	10.1128/mbio.02051-23	2024
	The Tol-Pal system of Acinetobacter baumannii is important for cell morphology, antibiotic resistance and virulence.	Hubloher JJ, Van der Sande L, Schaudinn C, Muller V, Averhoff B.	Int Microbiol	10.1007/s10123-022-00319-9	2023
	Role of Matrix-Assisted Laser Desorption Ionization-Time-of-Flight Mass Spectrometry for Species Identification of Acinetobacter Strains.	Krishnaraj A, Gupta P, Bhatia M, Omar BJ.	J Lab Physicians	10.1055/s-0042-1760401	2023
Phylogeny	Genomics of Acinetobacter baumannii iron uptake.	Artuso I, Poddar H, Evans BA, Visca P.	Microb Genom	10.1099/mgen.0.001080	2023
Phylogeny	Prevalence of Antibiotic Resistance Genes in Differently Processed Smoothies and Fresh Produce from Austria.	Galazka S, Vigl V, Kuffner M, Dielacher I, Spettel K, Kriz R, Kreuzinger N, Vierheilig J, Woegerbauer M.	Foods	10.3390/foods14010011	2024
	Coupled biosynthesis and esterification of 1,2,4-butanetriol to simplify its separation from fermentation broth.	Feng X, Gao W, Zhou Y, Zhao Z, Liu X, Han X, Xian M, Zhao G.	Eng Life Sci	10.1002/elsc.201800131	2019
Pathogenicity	The Acinetobacter baumannii model can explain the role of small non-coding RNAs as potential mediators of host-pathogen interactions.	Sarshar M, Scribano D, Palamara AT, Ambrosi C, Masotti A.	Front Mol Biosci	10.3389/fmolb.2022.1088783	2022
Metabolism	Matching Protein Interfaces for Improved Medium-Chain Fatty Acid Production.	Sarria S, Bartholow TG, Verga A, Burkart MD, Peralta-Yahya P.	ACS Synth Biol	10.1021/acssynbio.7b00334	2018
Metabolism	Less is more: selective advantages can explain the prevalent loss of biosynthetic genes in bacteria.	D'Souza G, Waschina S, Pande S, Bohl K, Kaleta C, Kost C.	Evolution	10.1111/evo.12468	2014
	Glycoproteomics and Its Role in Understanding Bacterial O-Linked Glycosylation.	Karlic KI, Tahir H, Scott NE.	Proteomics	10.1002/pmic.202400256	2025
	Environmental concentrations of surfactants as a trigger for climax of horizonal gene transfer of antibiotic resistance.	Wang X, Du G, Qiao Z, Yang Y, Shi H, Zhang D, Pan X.	Heliyon	10.1016/j.heliyon.2023.e17034	2023
	No effect of natural transformation on the evolution of resistance to bacteriophages in the Acinetobacter baylyi model system.	McLeman A, Sierocinski P, Hesse E, Buckling A, Perron G, Hulter N, Johnsen PJ, Vos M.	Sci Rep	10.1038/srep37144	2016
Genetics	Rapid and assured genetic engineering methods applied to Acinetobacter baylyi ADP1 genome streamlining.	Suarez GA, Dugan KR, Renda BA, Leonard SP, Gangavarapu LS, Barrick JE.	Nucleic Acids Res	10.1093/nar/gkaa204	2020
Genetics	Bioprospecting the microbiome of Red Sea Atlantis II brine pool for peptidases and biosynthetic genes with promising antibacterial activity.	Ziko L, AbdelRaheem O, Nabil M, Aziz RK, Siam R.	Microb Cell Fact	10.1186/s12934-022-01835-z	2022
Genetics	Genome-wide selection for increased copy number in Acinetobacter baylyi ADP1: locus and context-dependent variation in gene amplification.	Seaton SC, Elliott KT, Cuff LE, Laniohan NS, Patel PR, Neidle EL.	Mol Microbiol	10.1111/j.1365-2958.2011.07945.x	2012
	One-Day Construction of Multiplex Arrays to Harness Natural CRISPR-Cas Systems.	Cooper RM, Hasty J.	ACS Synth Biol	10.1021/acssynbio.9b00489	2020
	Expanding Tiny Earth to genomics: a bioinformatics approach for an undergraduate class to characterize antagonistic strains.	Basalla J, Harris R, Burgess E, Zeedyk N, Wildschutte H.	FEMS Microbiol Lett	10.1093/femsle/fnaa018	2020
	An Ultra-Sensitive Comamonas thiooxidans Biosensor for the Rapid Detection of Enzymatic Polyethylene Terephthalate (PET) Degradation.	Dierkes RF, Wypych A, Perez-Garcia P, Danso D, Chow J, Streit WR.	Appl Environ Microbiol	10.1128/aem.01603-22	2023
	Dynamic decoupling of biomass and wax ester biosynthesis in Acinetobacter baylyi by an autonomously regulated switch.	Santala S, Efimova E, Santala V.	Metab Eng Commun	10.1016/j.mec.2018.e00078	2018
	Direct grafting of anti-fouling polyglycerol layers to steel and other technically relevant materials.	Weber T, Bechthold M, Winkler T, Dauselt J, Terfort A.	Colloids Surf B Biointerfaces	10.1016/j.colsurfb.2013.05.026	2013
	Lactate-mediated mixotrophic co-cultivation of Clostridium drakei and recombinant Acetobacterium woodii for autotrophic production of volatile fatty acids.	Mook A, Herzog J, Walther P, Durre P, Bengelsdorf FR.	Microb Cell Fact	10.1186/s12934-024-02481-3	2024
Metabolism	Salt adaptation in Acinetobacter baylyi: identification and characterization of a secondary glycine betaine transporter.	Sand M, de Berardinis V, Mingote A, Santos H, Gottig S, Muller V, Averhoff B.	Arch Microbiol	10.1007/s00203-011-0713-x	2011
	Bioelectricity generation using long-term operated biocathode: RFLP based microbial diversity analysis.	Ramanaiah SV, Cordas CM, Matias SC, Reddy MV, Leitao JH, Fonseca LP.	Biotechnol Rep (Amst)	10.1016/j.btre.2021.e00693	2021
Enzymology	Unidirectional mannitol synthesis of Acinetobacter baumannii MtlD is facilitated by the helix-loop-helix-mediated dimer formation.	Tam HK, Konig P, Himpich S, Ngu ND, Abele R, Muller V, Pos KM.	Proc Natl Acad Sci U S A	10.1073/pnas.2107994119	2022
Enzymology	Identification of important residues in diketoreductase from Acinetobacter baylyi by molecular modeling and site-directed mutagenesis.	Huang Y, Lu Z, Liu N, Chen Y.	Biochimie	10.1016/j.biochi.2011.08.015	2012
	Motor-independent retraction of type IV pili is governed by an inherent property of the pilus filament.	Chlebek JL, Denise R, Craig L, Dalia AB.	Proc Natl Acad Sci U S A	10.1073/pnas.2102780118	2021
	Unstructured kinetic models to simulate an arabinose switch that decouples cell growth from metabolite production.	Edwards H, Xu P.	Synth Syst Biotechnol	10.1016/j.synbio.2020.07.003	2020
	Molecular characterization of a proteolytic bacterium in Panchagavya: An organic fertilizer mixture.	Sayi DS, Mohan S, Vinod Kumar K.	J Ayurveda Integr Med	10.1016/j.jaim.2017.04.007	2018
	Gemmotherapy Extracts Like the Dog Rose, Lingonberry, Sea Buckthorn, Blackthorn, Common Grape, Hawthorn, Raspberry and Boxwood Feature Variable Yet Excelling Antimicrobial Effects.	Hejja M, Gyorgy E, Loga FA, Nagy R, Pacza T, Sipos P, Tanko G, Laslo E, Meszaros N, Turcus V, Olah NK, Mathe E.	Antibiotics (Basel)	10.3390/antibiotics14101052	2025
	Retraction ATPase Motors from Three Orthologous Type IVa Pilus Systems Support Promiscuous Retraction of the Vibrio cholerae Competence Pilus.	Couser E, Chlebek JL, Dalia AB.	J Bacteriol	10.1128/jb.00126-22	2022
Metabolism	Functional Expression and Characterization of a Panel of Cobalt and Iron-Dependent Nitrile Hydratases.	Grill B, Glanzer M, Schwab H, Steiner K, Pienaar D, Brady D, Donsbach K, Winkler M.	Molecules	10.3390/molecules25112521	2020
	Paradigm of engineering recalcitrant non-model microorganism with dominant metabolic pathway as a biorefinery chassis.	Yan X, Bao W, Wu Y, Zhang C, Mao Z, Yuan Q, Hu Z, He P, Peng Q, Hu M, Geng B, Ma H, Chen S, Fei Q, He Q, Yang S.	Nat Commun	10.1038/s41467-024-54897-5	2024
	Membrane-Located Expression of Thioesterase From Acinetobacter baylyi Enhances Free Fatty Acid Production With Decreased Toxicity in Synechocystis sp. PCC6803.	Afrin S, Khan MRI, Zhang W, Wang Y, Zhang W, He L, Ma G.	Front Microbiol	10.3389/fmicb.2018.02842	2018
	Interrogating the Transient Selectivity of Bacterial Chemotaxis-Driven Affinity and Accumulation of Carbonaceous Substances via Raman Microspectroscopy.	Li H, Martin FL, Jones KC, Zhang D, Zhang D, Zhang D.	Front Microbiol	10.3389/fmicb.2019.02215	2019
	Vibrio natriegens as a pET-Compatible Expression Host Complementary to Escherichia coli.	Xu J, Dong F, Wu M, Tao R, Yang J, Wu M, Jiang Y, Yang S, Yang L.	Front Microbiol	10.3389/fmicb.2021.627181	2021
Genetics	Genome-wide identification of Diacylglycerol Acyltransferases (DGAT) family genes influencing Milk production in Buffalo.	Liu J, Wang Z, Li J, Li H, Yang L.	BMC Genet	10.1186/s12863-020-0832-y	2020
Phylogeny	Effects of Broad-Spectrum Antibiotic (Florfenicol) on Resistance Genes and Bacterial Community Structure of Water and Sediments in an Aquatic Microcosm Model.	Zhang T, Ding Y, Peng J, Dai Y, Luo S, Liu W, Ma Y.	Antibiotics (Basel)	10.3390/antibiotics11101299	2022
	The structure and diversity of microbial communities in Paederus fuscipes (Coleoptera: Staphylinidae): from ecological paradigm to pathobiome.	Chamankar B, Maleki-Ravasan N, Karami M, Forouzan E, Karimian F, Naeimi S, Choobdar N.	Microbiome	10.1186/s40168-022-01456-z	2023
	Natural transformation-specific DprA coordinate DNA double-strand break repair pathways in heavily irradiated D. radiodurans.	Sharma DK, Soni I, Misra HS, Rajpurohit YS.	Appl Environ Microbiol	10.1128/aem.01948-23	2024
	Comprehensive Analysis of Bacteriocins Produced by the Hypermucoviscous Klebsiella pneumoniae Species Complex.	Le MN, Nguyen TH, Trinh VM, Nguyen TP, Kawada-Matsuo M, Kayama S, Sugai M, Komatsuzawa H.	Microbiol Spectr	10.1128/spectrum.00863-23	2023
	Reversion of Ceftazidime Resistance in Pseudomonas aeruginosa under Clinical Setting.	Liu Q, Yin L, Zhang X, Zhu G, Liu H, Bai F, Cheng Z, Wu W, Jin Y.	Microorganisms	10.3390/microorganisms10122395	2022
	Segregational drift hinders the evolution of antibiotic resistance on polyploid replicons.	Garona A, Santer M, Hulter NF, Uecker H, Dagan T.	PLoS Genet	10.1371/journal.pgen.1010829	2023
	Switching carbon metabolic flux for enhancing the production of sesquiterpene-based high-density biofuel precursor in Saccharomyces cerevisiae.	Liang B, Yang Q, Zhang X, Zhao Y, Liu Y, Yang J, Wang Z.	Biotechnol Biofuels Bioprod	10.1186/s13068-023-02370-8	2023
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	Decoding the resistome, virulome and mobilome of clinical versus aquatic Acinetobacter baumannii in southern Romania.	Gheorghe-Barbu I, Surleac M, Barbu IC, Paraschiv S, Banica LM, Rotaru LI, Vrancianu CO, Nita Lazar M, Otelea D, Chifiriuc MC.	Heliyon	10.1016/j.heliyon.2024.e33372	2024
	Functional annotation and importance of marine bacterial transporters of plankton exometabolites.	Schroer WF, Kepner HE, Uchimiya M, Mejia C, Rodriguez LT, Reisch CR, Moran MA.	ISME Commun	10.1038/s43705-023-00244-6	2023
Metabolism	The beta-ketoadipate pathway of Acinetobacter baylyi undergoes carbon catabolite repression, cross-regulation and vertical regulation, and is affected by Crc.	Bleichrodt FS, Fischer R, Gerischer UC.	Microbiology (Reading)	10.1099/mic.0.037424-0	2010
Metabolism	The small RNA Aar in Acinetobacter baylyi: a putative regulator of amino acid metabolism.	Schilling D, Findeiss S, Richter AS, Taylor JA, Gerischer U.	Arch Microbiol	10.1007/s00203-010-0592-6	2010
Genetics	Halopseudomonas species: Cultivation and molecular genetic tools.	Kruse L, Loeschcke A, de Witt J, Wierckx N, Jaeger KE, Thies S.	Microb Biotechnol	10.1111/1751-7915.14369	2024
	Manipulation of natural transformation by AbaR-type islands promotes fixation of antibiotic resistance in Acinetobacter baumannii.	Tuffet R, Carvalho G, Godeux AS, Mazzamurro F, Rocha EPC, Laaberki MH, Venner S, Charpentier X.	Proc Natl Acad Sci U S A	10.1073/pnas.2409843121	2024
Enzymology	Isolation and characterization of a novel thermophilic-organic solvent stable lipase from Acinetobacter baylyi.	Uttatree S, Winayanuwattikun P, Charoenpanich J.	Appl Biochem Biotechnol	10.1007/s12010-010-8928-x	2010
	Seeing red; the development of pON.mCherry, a broad-host range constitutive expression plasmid for Gram-negative bacteria.	Gebhardt MJ, Jacobson RK, Shuman HA.	PLoS One	10.1371/journal.pone.0173116	2017
	VgrG Spike Dictates PAAR Requirement for the Assembly of the Type VI Secretion System.	Liang X, Zheng HY, Zhao YJ, Zhang YQ, Pei TT, Cui Y, Tang MX, Xu P, Dong T.	J Bacteriol	10.1128/jb.00356-22	2023
Phylogeny	Identification of Acinetobacter species: is Bruker biotyper MALDI-TOF mass spectrometry a good alternative to molecular techniques?	Alvarez-Buylla A, Culebras E, Picazo JJ.	Infect Genet Evol	10.1016/j.meegid.2012.01.002	2012
	Engineering oleaginous yeast Rhodotorula toruloides for overproduction of fatty acid ethyl esters.	Zhang Y, Peng J, Zhao H, Shi S.	Biotechnol Biofuels	10.1186/s13068-021-01965-3	2021
	Bio-upcycling of even and uneven medium-chain-length diols and dicarboxylates to polyhydroxyalkanoates using engineered Pseudomonas putida.	Ackermann YS, de Witt J, Mezzina MP, Schroth C, Polen T, Nikel PI, Wynands B, Wierckx N.	Microb Cell Fact	10.1186/s12934-024-02310-7	2024
Metabolism	Whole cell bioreporter application for rapid detection and evaluation of crude oil spill in seawater caused by Dalian oil tank explosion.	Zhang D, Zhang D, Zhang D, Ding A, Cui S, Hu C, Thornton SF, Dou J, Sun Y, Huang WE.	Water Res	10.1016/j.watres.2012.11.038	2013
Enzymology	Cloning, expression, and characterization of a novel diketoreductase from Acinetobacter baylyi.	Wu X, Wu X, Liu N, He Y, Chen Y.	Acta Biochim Biophys Sin (Shanghai)	10.1093/abbs/gmn019	2009
Pathogenicity	Bacterial extracellular vesicles and their novel therapeutic applications in health and cancer.	Hosseini-Giv N, Basas A, Hicks C, El-Omar E, El-Assaad F, Hosseini-Beheshti E.	Front Cell Infect Microbiol	10.3389/fcimb.2022.962216	2022
Metabolism	Synthesis of FAEEs from glycerol in engineered Saccharomyces cerevisiae using endogenously produced ethanol by heterologous expression of an unspecific bacterial acyltransferase.	Yu KO, Jung J, Kim SW, Park CH, Han SO.	Biotechnol Bioeng	10.1002/bit.23311	2012
	Environmental and Taxonomic Drivers of Bacterial Extracellular Vesicle Production in Marine Ecosystems.	Biller SJ, Coe A, Arellano AA, Dooley K, Silvestri SM, Gong JS, Yeager EA, Becker JW, Chisholm SW.	Appl Environ Microbiol	10.1128/aem.00594-23	2023
	Engineering CatM, a LysR-Type Transcriptional Regulator, to Respond Synergistically to Two Effectors.	Tumen-Velasquez MP, Laniohan NS, Momany C, Neidle EL.	Genes (Basel)	10.3390/genes10060421	2019
	Mapping Protein-Protein Interactions at Birth: Single-Particle Cryo-EM Analysis of a Ribosome-Nascent Globin Complex.	Masse MM, Hutchinson RB, Morgan CE, Allaman HJ, Guan H, Yu EW, Cavagnero S.	ACS Cent Sci	10.1021/acscentsci.3c00777	2024
	Segregational Drift Constrains the Evolutionary Rate of Prokaryotic Plasmids.	Garona A, Hulter NF, Romero Picazo D, Dagan T.	Mol Biol Evol	10.1093/molbev/msab283	2021
	Natural transformation in Gram-negative bacteria thriving in extreme environments: from genes and genomes to proteins, structures and regulation.	Averhoff B, Kirchner L, Pfefferle K, Yaman D.	Extremophiles	10.1007/s00792-021-01242-z	2021
	A strategy to enhance and modify fatty acid synthesis in Corynebacterium glutamicum and Escherichia coli: overexpression of acyl-CoA thioesterases.	Liu J, Mandlaa, Wang J, Sun Z, Chen Z.	Microb Cell Fact	10.1186/s12934-023-02189-w	2023
Metabolism	Inducer responses of BenM, a LysR-type transcriptional regulator from Acinetobacter baylyi ADP1.	Craven SH, Ezezika OC, Haddad S, Hall RA, Momany C, Neidle EL.	Mol Microbiol	10.1111/j.1365-2958.2009.06686.x	2009
Metabolism	Crystal structure of the ligand-binding domain of a LysR-type transcriptional regulator: transcriptional activation via a rotary switch.	Kim Y, Chhor G, Tsai CS, Winans JB, Jedrzejczak R, Joachimiak A, Winans SC.	Mol Microbiol	10.1111/mmi.14115	2018
	High reliability transformation of the basal fungus Mucor circinelloides by electroporation.	Gutierrez A, Lopez-Garcia S, Garre V.	J Microbiol Methods	10.1016/j.mimet.2011.01.002	2011
	Surface Motility Favors Codependent Interaction between Pseudomonas aeruginosa and Burkholderia cenocepacia.	Morin C, Landry M, Groleau MC, Deziel E.	mSphere	10.1128/msphere.00153-22	2022
Genetics	GROOLS: reactive graph reasoning for genome annotation through biological processes.	Mercier J, Josso A, Medigue C, Vallenet D.	BMC Bioinformatics	10.1186/s12859-018-2126-1	2018
	Essential gene deletions producing gigantic bacteria.	Bailey J, Cass J, Gasper J, Ngo ND, Wiggins P, Manoil C.	PLoS Genet	10.1371/journal.pgen.1008195	2019
Metabolism	Metabolic production of a novel polymer feedstock, 3-carboxy muconate, from vanillin.	Gosling A, Fowler SJ, O'Shea MS, Straffon M, Dumsday G, Zachariou M.	Appl Microbiol Biotechnol	10.1007/s00253-010-3078-1	2011
Metabolism	Frequent integration of short homologous DNA tracks during Acinetobacter baylyi transformation and influence of transcription and RecJ and SbcCD DNases.	Hulter N, Wackernagel W.	Microbiology (Reading)	10.1099/mic.0.2008/021378-0	2008
Metabolism	The RecBCD and SbcCD DNases suppress homology-facilitated illegitimate recombination during natural transformation of Acinetobacter baylyi.	Harms K, Wackernagel W.	Microbiology (Reading)	10.1099/mic.0.2008/018382-0	2008
Metabolism	Aromatic degradative pathways in Acinetobacter baylyi underlie carbon catabolite repression.	Fischer R, Bleichrodt FS, Gerischer UC.	Microbiology (Reading)	10.1099/mic.0.2008/016907-0	2008
	Accelerating pathway evolution by increasing the gene dosage of chromosomal segments.	Tumen-Velasquez M, Johnson CW, Ahmed A, Dominick G, Fulk EM, Khanna P, Lee SA, Schmidt AL, Linger JG, Eiteman MA, Beckham GT, Neidle EL.	Proc Natl Acad Sci U S A	10.1073/pnas.1803745115	2018
Metabolism	Improved fatty aldehyde and wax ester production by overexpression of fatty acyl-CoA reductases.	Lehtinen T, Efimova E, Santala S, Santala V.	Microb Cell Fact	10.1186/s12934-018-0869-z	2018
Phylogeny	Unique organization of the 16S-23S intergenic spacer regions of strains of Acinetobacter baylyi provides a means for its identification from other Acinetobacter species.	Maslunka C, Gurtler V, Carr EL, Seviour RJ.	J Microbiol Methods	10.1016/j.mimet.2008.03.003	2008
	Production of alkanes from CO₂ by engineered bacteria.	Lehtinen T, Virtanen H, Santala S, Santala V.	Biotechnol Biofuels	10.1186/s13068-018-1229-2	2018
	An inhibitor/anti-inhibitor system controls the activity of lytic transglycosylase MltF in Pseudomonas aeruginosa.	Wang M, Xiao Ma S, Darwin AJ.	mBio	10.1128/mbio.02022-23	2023
	Double illegitimate recombination events integrate DNA segments through two different mechanisms during natural transformation of Acinetobacter baylyi.	Hulter N, Wackernagel W.	Mol Microbiol	10.1111/j.1365-2958.2007.06096.x	2008
	A Transposon-Associated CRISPR/Cas9 System Specifically Eliminates both Chromosomal and Plasmid-Borne mcr-1 in Escherichia coli.	He YZ, Yan JR, He B, Ren H, Kuang X, Long TF, Chen CP, Liao XP, Liu YH, Sun J.	Antimicrob Agents Chemother	10.1128/aac.01054-21	2021
Metabolism	Relevance of nucleotides of the PcaU binding site from Acinetobacter baylyi.	Jerg B, Gerischer U.	Microbiology (Reading)	10.1099/mic.0.2007/013508-0	2008
Metabolism	ComM is a hexameric helicase that promotes branch migration during natural transformation in diverse Gram-negative species.	Nero TM, Dalia TN, Wang JC, Kysela DT, Bochman ML, Dalia AB.	Nucleic Acids Res	10.1093/nar/gky343	2018
Genetics	Enhancing multiplex genome editing by natural transformation (MuGENT) via inactivation of ssDNA exonucleases.	Dalia TN, Yoon SH, Galli E, Barre FX, Waters CM, Dalia AB.	Nucleic Acids Res	10.1093/nar/gkx496	2017
	Outer Membrane Vesicles of Avian PathogenicEscherichia coli Mediate the Horizontal Transmission of bla_CTX-M-55.	Li C, Wen R, Mu R, Chen X, Ma P, Gu K, Huang Z, Ju Z, Lei C, Tang Y, Wang H.	Pathogens	10.3390/pathogens11040481	2022
Pathogenicity	Evaluation of the Accelerate Pheno System for Identification of Acinetobacter Clinical Isolates and Minocycline Susceptibility Testing.	Bowler SL, Towne JW, Humphries RM, Doi Y.	J Clin Microbiol	10.1128/jcm.01711-18	2019
	Citizen Science to Raise Antimicrobial Resistance Awareness in the Community: The MicroMundo Project in Spain and Portugal.	Gil-Serna J, Antunes P, Campoy S, Cid A, Cobo-Molinos A, Durao P, Fajardo C, Fouz B, Freitas AR, Grosso F, de Groot PWJ, de Miguel T, Zorn BG, Hinojosa B, Leao MJ, Llagostera M, de Llanos R, Lucia A, Maicas S, Marin I, Martinez-Canamero M, Miranda C, Molina-Guijarro JM, Moreno DA, de Los Llanos Palop M, Perez-Alvarez MJ, Pereira PM, Perez-Gracia MT, Quinteira S, Rioboo C, Robredo B, Rodriguez-Calleja JM, de la Haba RR, Sanchez S, Angulo MS, Sanchez-Porro C, Sangari FJ, Santos B, Silveira E, Vicedo B, Cid VJ, all members of MicroMundo Teams in Spain and Portugal.	Microb Biotechnol	10.1111/1751-7915.70123	2025
Metabolism	Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose.	Kannisto M, Aho T, Karp M, Santala V.	Appl Environ Microbiol	10.1128/aem.01837-14	2014
	Four families of folate-independent methionine synthases.	Price MN, Deutschbauer AM, Arkin AP.	PLoS Genet	10.1371/journal.pgen.1009342	2021
	Type VI Secretion System Accessory Protein TagAB-5 Promotes Burkholderia pseudomallei Pathogenicity in Human Microglia.	Lohitthai S, Rungruengkitkun A, Jitprasutwit N, Kong-Ngoen T, Duangurai T, Tandhavanant S, Sukphopetch P, Chantratita N, Indrawattana N, Pumirat P.	Biomedicines	10.3390/biomedicines11112927	2023
Metabolism	The Regulation of LexA on UV-Induced SOS Response in Myxococcus xanthus Based on Transcriptome Analysis.	Sheng DH, Wang Y, Wu SG, Duan RQ, Li YZ.	J Microbiol Biotechnol	10.4014/jmb.2103.03047	2021
Pathogenicity	'GGFGGQ' repeats in Hfq of Acinetobacter baumannii are essential for nutrient utilization and virulence.	Sett A, Maiti PK, Garg K, Hussain A, Saini S, Pandey S, Pathania R.	J Biol Chem	10.1016/j.jbc.2024.107895	2024
	Costs and benefits of natural transformation in Acinetobacter baylyi.	Hulter N, Sorum V, Borch-Pedersen K, Liljegren MM, Utnes AL, Primicerio R, Harms K, Johnsen PJ.	BMC Microbiol	10.1186/s12866-017-0953-2	2017
	Deletions of recBCD or recD influence genetic transformation differently and are lethal together with a recJ deletion in Acinetobacter baylyi.	Kickstein E, Harms K, Wackernagel W.	Microbiology (Reading)	10.1099/mic.0.2007/005256-0	2007
Metabolism	The RecJ DNase strongly suppresses genomic integration of short but not long foreign DNA fragments by homology-facilitated illegitimate recombination during transformation of Acinetobacter baylyi.	Harms K, Schon V, Kickstein E, Wackernagel W.	Mol Microbiol	10.1111/j.1365-2958.2007.05692.x	2007
	Global analysis of the RNA-RNA interactome in Acinetobacter baumannii AB5075 uncovers a small regulatory RNA repressing the virulence-related outer membrane protein CarO.	Hamrock FJ, Ryan D, Shaibah A, Ershova AS, Mogre A, Sulimani MM, Ben Taarit S, Reichardt S, Hokamp K, Westermann AJ, Kroger C.	Nucleic Acids Res	10.1093/nar/gkae668	2024
Metabolism	The Acinetobacter Outer Membrane Contains Multiple Specific Channels for Carbapenem beta-Lactams as Revealed by Kinetic Characterization Analyses of Imipenem Permeation into Acinetobacter baylyi Cells.	Moran-Barrio J, Cameranesi MM, Relling V, Limansky AS, Brambilla L, Viale AM.	Antimicrob Agents Chemother	10.1128/aac.01737-16	2017
Metabolism	Full-length structures of BenM and two variants reveal different oligomerization schemes for LysR-type transcriptional regulators.	Ruangprasert A, Craven SH, Neidle EL, Momany C.	J Mol Biol	10.1016/j.jmb.2010.09.053	2010
Pathogenicity	Contact-dependent growth inhibition (CDI) systems deploy a large family of polymorphic ionophoric toxins for inter-bacterial competition.	Halvorsen TM, Schroeder KA, Jones AM, Hammarlof D, Low DA, Koskiniemi S, Hayes CS.	PLoS Genet	10.1371/journal.pgen.1011494	2024
	Identification of unique cardiolipin and monolysocardiolipin species in Acinetobacter baumannii.	Lopalco P, Stahl J, Annese C, Averhoff B, Corcelli A.	Sci Rep	10.1038/s41598-017-03214-w	2017
	Extracellular polymeric substance architecture influences natural genetic transformation of Acinetobacter baylyi in biofilms.	Merod RT, Wuertz S.	Appl Environ Microbiol	10.1128/aem.01984-14	2014
Metabolism	The role of core and accessory type IV pilus genes in natural transformation and twitching motility in the bacterium Acinetobacter baylyi.	Leong CG, Bloomfield RA, Boyd CA, Dornbusch AJ, Lieber L, Liu F, Owen A, Slay E, Lang KM, Lostroh CP.	PLoS One	10.1371/journal.pone.0182139	2017
	Does Secondary Plant Metabolite Ursolic Acid Exhibit Antibacterial Activity against Uropathogenic Escherichia coli Living in Single- and Multispecies Biofilms?	Sycz Z, Wojnicz D, Tichaczek-Goska D.	Pharmaceutics	10.3390/pharmaceutics14081691	2022
	Transformation of Acinetobacter baylyi in non-sterile soil using recombinant plant nuclear DNA.	Simpson DJ, Fry JC, Rogers HJ, Day MJ.	Environ Biosafety Res	10.1051/ebr:2007024	2007
	Capsular polysaccharide restrains type VI secretion in Acinetobacter baumannii.	Flaugnatti N, Bader L, Croisier-Coeytaux M, Blokesch M.	Elife	10.7554/elife.101032	2025
	The Impact of Bacteriocenoses on Sperm Vitality, Immunological and Oxidative Characteristics of Ram Ejaculates: Does the Breed Play a Role?	Tvrda E, Kacaniova M, Balazi A, Vasicek J, Vozaf J, Jurcik R, Duracka M, Ziarovska J, Kovac J, Chrenek P.	Animals (Basel)	10.3390/ani12010054	2021
	The future of self-selecting and stable fermentations.	Rugbjerg P, Olsson L.	J Ind Microbiol Biotechnol	10.1007/s10295-020-02325-0	2020
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Enzymology	Metabolic pathway engineering of high-salinity-induced overproduction of L-proline improves high-salinity stress tolerance of an ectoine-deficient Halomonas elongata.	Khanh HC, Kaothien-Nakayama P, Zou Z, Nakayama H.	Appl Environ Microbiol	10.1128/aem.01195-24	2024
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Enzymology	PilT and PilU are homohexameric ATPases that coordinate to retract type IVa pili.	Chlebek JL, Hughes HQ, Ratkiewicz AS, Rayyan R, Wang JC, Herrin BE, Dalia TN, Biais N, Dalia AB.	PLoS Genet	10.1371/journal.pgen.1008448	2019
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Pathogenicity	Clinical carbapenem-resistant Acinetobacter baylyi strain coharboring blaSIM-1 and blaOXA-23 from China.	Zhou Z, Du X, Wang L, Yang Q, Fu Y, Yu Y.	Antimicrob Agents Chemother	10.1128/aac.00425-11	2011
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Metabolism	Functional and structural analysis of catabolite control protein C that responds to citrate.	Liu W, Chen J, Jin L, Liu ZY, Lu M, Jiang G, Yang Q, Quan C, Nam KH, Xu Y.	Sci Rep	10.1038/s41598-021-99552-x	2021
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Phylogeny	Variation of 16S-23S rRNA intergenic spacer regions (ISRs) in Acinetobacter baylyi (strain B2) isolated from activated sludge.	Carr EL, Gurtler V, Seviour RJ.	Syst Appl Microbiol	10.1078/0723202041438491	2004
	Relationship between the Antifungal Activity of Chitosan-Capsaicin Nanoparticles and the Oxidative Stress Response on Aspergillus parasiticus.	Hernandez-Tellez CN, Luque-Alcaraz AG, Nunez-Mexia SA, Cortez-Rocha MO, Lizardi-Mendoza J, Rosas-Burgos EC, Rosas-Durazo AJ, Parra-Vergara NV, Plascencia-Jatomea M.	Polymers (Basel)	10.3390/polym14142774	2022
	Opportunities for genetic investigation afforded by Acinetobacter baylyi, a nutritionally versatile bacterial species that is highly competent for natural transformation.	Young DM, Parke D, Ornston LN.	Annu Rev Microbiol	10.1146/annurev.micro.59.051905.105823	2005
Metabolism	The role of Acinetobacter baumannii response regulator BfmR in pellicle formation and competitiveness via contact-dependent inhibition system.	Krasauskas R, Skerniskyte J, Armalyte J, Suziedeliene E.	BMC Microbiol	10.1186/s12866-019-1621-5	2019
	Non-antibiotic pharmaceuticals enhance the transmission of exogenous antibiotic resistance genes through bacterial transformation.	Wang Y, Lu J, Engelstadter J, Zhang S, Ding P, Mao L, Yuan Z, Bond PL, Guo J.	ISME J	10.1038/s41396-020-0679-2	2020
	Using an environmentally-relevant panel of Gram-negative bacteria to assess the toxicity of polyallylamine hydrochloride-wrapped gold nanoparticles.	Buchman JT, Rahnamoun A, Landy KM, Zhang X, Vartanian AM, Jacob LM, Murphy CJ, Hernandez R, Haynes CL.	Environ Sci Nano	10.1039/c7en00832e	2018
Metabolism	Exploring functionality of the reverse beta-oxidation pathway in Corynebacterium glutamicum for production of adipic acid.	Shin JH, Andersen AJC, Achterberg P, Olsson L.	Microb Cell Fact	10.1186/s12934-021-01647-7	2021
Metabolism	Members of the Rid protein family have broad imine deaminase activity and can accelerate the Pseudomonas aeruginosa D-arginine dehydrogenase (DauA) reaction in vitro.	Hodge-Hanson KM, Downs DM.	PLoS One	10.1371/journal.pone.0185544	2017
	Horizontal gene transfer via OMVs co-carrying virulence and antimicrobial-resistant genes is a novel way for the dissemination of carbapenem-resistant hypervirulent Klebsiella pneumoniae.	Li P, Luo W, Xiang TX, Jiang Y, Liu P, Wei DD, Fan L, Huang S, Liao W, Liu Y, Zhang W.	Front Microbiol	10.3389/fmicb.2022.945972	2022
Metabolism	Histidine Utilization Is a Critical Determinant of Acinetobacter Pathogenesis.	Lonergan ZR, Palmer LD, Skaar EP.	Infect Immun	10.1128/iai.00118-20	2020
	Subcellular localization of Type VI secretion system assembly in response to cell-cell contact.	Lin L, Capozzoli R, Ferrand A, Plum M, Vettiger A, Basler M.	EMBO J	10.15252/embj.2021108595	2022
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Pathogenicity	Identification and Comparative Genomic Analysis of Type VI Secretion Systems and Effectors in Klebsiella pneumoniae.	Li W, Liu X, Tsui W, Xu A, Li D, Zhang X, Li P, Bian X, Zhang J.	Front Microbiol	10.3389/fmicb.2022.853744	2022
	The first report of a novel IncHI1B bla _SIM-1-carrying megaplasmid pSIM-1-BJ01 from a clinical Klebsiella pneumoniae isolate.	Lu Y, Zhao S, Liang H, Zhang W, Liu J, Hu H.	Infect Drug Resist	10.2147/idr.s212333	2019
Metabolism	Whole-cell bacterial bioreporter for actively searching and sensing of alkanes and oil spills.	Zhang D, Zhang D, Zhang D, He Y, Wang Y, Wang H, Wu L, Aries E, Huang WE.	Microb Biotechnol	10.1111/j.1751-7915.2011.00301.x	2012
	kmtricks: efficient and flexible construction of Bloom filters for large sequencing data collections.	Lemane T, Medvedev P, Chikhi R, Peterlongo P.	Bioinform Adv	10.1093/bioadv/vbac029	2022
Metabolism	Conserved mechanism of cell-wall synthase regulation revealed by the identification of a new PBP activator in Pseudomonas aeruginosa.	Greene NG, Fumeaux C, Bernhardt TG.	Proc Natl Acad Sci U S A	10.1073/pnas.1717925115	2018
Metabolism	The apolipoprotein N-acyl transferase Lnt is dispensable for growth in Acinetobacter species.	Gwin CM, Prakash N, Christian Belisario J, Haider L, Rosen ML, Martinez LR, Rigel NW.	Microbiology (Reading)	10.1099/mic.0.000726	2018
Enzymology	Wide dissemination of OXA-type carbapenemases in clinical Acinetobacter spp. isolates from South Korea.	Lee K, Kim MN, Choi TY, Cho SE, Lee S, Whang DH, Yong D, Chong Y, Woodford N, Livermore DM, KONSAR Group.	Int J Antimicrob Agents	10.1016/j.ijantimicag.2008.10.009	2009
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	Non-essentiality of canonical cell division genes in the planctomycete Planctopirus limnophila.	Rivas-Marin E, Peeters SH, Claret Fernandez L, Jogler C, van Niftrik L, Wiegand S, Devos DP.	Sci Rep	10.1038/s41598-019-56978-8	2020
Metabolism	Lipoproteins and Their Trafficking to the Outer Membrane.	Grabowicz M.	EcoSal Plus	10.1128/ecosalplus.esp-0038-2018	2019
Metabolism	Abundance of bacterial Type VI secretion system components measured by targeted proteomics.	Lin L, Lezan E, Schmidt A, Basler M.	Nat Commun	10.1038/s41467-019-10466-9	2019
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	Pseudomonas aeruginosa mexT is an indicator of PAO1 strain integrity.	LoVullo ED, Schweizer HP.	J Med Microbiol	10.1099/jmm.0.001128	2020
	Delivery determinants of an Acinetobacter baumannii type VI secretion system bifunctional peptidoglycan hydrolase.	Bezkorovayna V, Hayes BK, Gillett FN, Wright A, Roper DI, Harper M, McGowan S, Boyce JD.	mBio	10.1128/mbio.02627-24	2025
	UmuDAb: An Error-Prone Polymerase Accessory Homolog Whose N-Terminal Domain Is Required for Repression of DNA Damage Inducible Gene Expression in Acinetobacter baylyi.	Witkowski TA, Grice AN, Stinnett DB, Wells WK, Peterson MA, Hare JM.	PLoS One	10.1371/journal.pone.0152013	2016
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	Sporomusa ovata as Catalyst for Bioelectrochemical Carbon Dioxide Reduction: A Review Across Disciplines From Microbiology to Process Engineering.	Madjarov J, Soares R, Paquete CM, Louro RO.	Front Microbiol	10.3389/fmicb.2022.913311	2022
Phylogeny	Use of MALDI-TOF MS and culturomics to identify mosquitoes and their midgut microbiota.	Tandina F, Almeras L, Kone AK, Doumbo OK, Raoult D, Parola P.	Parasit Vectors	10.1186/s13071-016-1776-y	2016
	The structural basis for high-affinity c-di-GMP binding to the GSPII-B domain of the traffic ATPase PilF from Thermus thermophilus.	Neissner K, Keller H, Kirchner L, Dusterhus S, Duchardt-Ferner E, Averhoff B, Wohnert J.	J Biol Chem	10.1016/j.jbc.2024.108041	2025
Genetics	An Environmental Escherichia coli Strain Is Naturally Competent to Acquire Exogenous DNA.	Riva F, Riva V, Eckert EM, Colinas N, Di Cesare A, Borin S, Mapelli F, Crotti E.	Front Microbiol	10.3389/fmicb.2020.574301	2020
	Scarless Removal of Large Resistance Island AbaR Results in Antibiotic Susceptibility and Increased Natural Transformability in Acinetobacter baumannii.	Godeux AS, Svedholm E, Lupo A, Haenni M, Venner S, Laaberki MH, Charpentier X.	Antimicrob Agents Chemother	10.1128/aac.00951-20	2020
Genetics	Elucidating Essential Genes in Plant-Associated Pseudomonas protegens Pf-5 Using Transposon Insertion Sequencing.	Fabian BK, Foster C, Asher AJ, Elbourne LDH, Cain AK, Hassan KA, Tetu SG, Paulsen IT.	J Bacteriol	10.1128/jb.00432-20	2021
	The Use of Electroactive Halophilic Bacteria for Improvements and Advancements in Environmental High Saline Biosensing.	Gaffney EM, Simoska O, Minteer SD.	Biosensors (Basel)	10.3390/bios11020048	2021
	Malonate degradation in Acinetobacter baylyi ADP1: operon organization and regulation by MdcR.	Stoudenmire JL, Schmidt AL, Tumen-Velasquez MP, Elliott KT, Laniohan NS, Walker Whitley S, Galloway NR, Nune M, West M, Momany C, Neidle EL, Karls AC.	Microbiology (Reading)	10.1099/mic.0.000462	2017
Enzymology	Identification and characterization of two new 5-keto-4-deoxy-D-Glucarate Dehydratases/Decarboxylases.	Pick A, Beer B, Hemmi R, Momma R, Schmid J, Miyamoto K, Sieber V.	BMC Biotechnol	10.1186/s12896-016-0308-3	2016
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	Complete functional analysis of type IV pilus components of a reemergent plant pathogen reveals neofunctionalization of paralog genes.	Merfa MV, Zhu X, Shantharaj D, Gomez LM, Naranjo E, Potnis N, Cobine PA, De La Fuente L.	PLoS Pathog	10.1371/journal.ppat.1011154	2023
	The tumor microbiome in cancer progression: mechanisms and therapeutic potential.	Zhang W, Xiang Y, Ren H, Liu Y, Wang Q, Ran M, Zhou W, Tian L, Zheng X, Qiao C, Liu Y, Yan M.	Mol Cancer	10.1186/s12943-025-02403-w	2025
Metabolism	Vibrio fischeri DarR Directs Responses to d-Aspartate and Represents a Group of Similar LysR-Type Transcriptional Regulators.	Jones RM, Popham DL, Schmidt AL, Neidle EL, Stabb EV.	J Bacteriol	10.1128/jb.00773-17	2018
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Enzymology	Metabolic engineering of Escherichia coli for the utilization of ethanol.	Cao Y, Mu H, Guo J, Liu H, Zhang R, Liu W, Xian M, Liu H.	J Biol Res (Thessalon)	10.1186/s40709-020-0111-0	2020
Metabolism	A corepressor participates in LexA-independent regulation of error-prone polymerases in Acinetobacter.	Peterson MA, Grice AN, Hare JM.	Microbiology (Reading)	10.1099/mic.0.000866	2020
Metabolism	VgrG-dependent effectors and chaperones modulate the assembly of the type VI secretion system.	Liang X, Pei TT, Li H, Zheng HY, Luo H, Cui Y, Tang MX, Zhao YJ, Xu P, Dong T.	PLoS Pathog	10.1371/journal.ppat.1010116	2021
Enzymology	Optimization of organic solvent-tolerant lipase production by Acinetobacter sp. UBT1 using deoiled castor seed cake.	Patel R, Prajapati V, Trivedi U, Patel K.	3 Biotech	10.1007/s13205-020-02501-0	2020
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Enzymology	Five Fatty Aldehyde Dehydrogenase Enzymes from Marinobacter and Acinetobacter spp. and Structural Insights into the Aldehyde Binding Pocket.	Bertram JH, Mulliner KM, Shi K, Plunkett MH, Nixon P, Serratore NA, Douglas CJ, Aihara H, Barney BM.	Appl Environ Microbiol	10.1128/aem.00018-17	2017
Enzymology	Discovery of a new prokaryotic type I GTP cyclohydrolase family.	El Yacoubi B, Bonnett S, Anderson JN, Swairjo MA, Iwata-Reuyl D, de Crecy-Lagard V.	J Biol Chem	10.1074/jbc.m607114200	2006
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Metabolism	Phosphinothricin Acetyltransferases Identified Using In Vivo, In Vitro, and Bioinformatic Analyses.	VanDrisse CM, Hentchel KL, Escalante-Semerena JC.	Appl Environ Microbiol	10.1128/aem.02604-16	2016
Enzymology	Role of common blaOXA-24/OXA-40-carrying platforms and plasmids in the spread of OXA-24/OXA-40 among Acinetobacter species clinical isolates.	Grosso F, Quinteira S, Poirel L, Novais A, Peixe L.	Antimicrob Agents Chemother	10.1128/aac.06255-11	2012
	Estimation of ribosomal RNA operon (rrn) copy number in Acinetobacter isolates and potential of patterns of rrn operon-containing fragments for typing strains of members of this genus.	Maslunka C, Carr E, Gurtler V, Kampfer P, Seviour R.	Syst Appl Microbiol	10.1016/j.syapm.2005.07.015	2006
Metabolism	Salt induction and activation of MtlD, the key enzyme in the synthesis of the compatible solute mannitol in Acinetobacter baumannii.	Zeidler S, Hubloher J, Konig P, Ngu ND, Scholz A, Averhoff B, Muller V.	Microbiologyopen	10.1002/mbo3.614	2018
	Sensitivity of an Acinetobacter baylyi mpl mutant to DNA damage.	Chakravorty A, Klovstad M, Peterson G, Lindeman RE, Gregg-Jolly LA.	Appl Environ Microbiol	10.1128/aem.02347-07	2008
Metabolism	Formylglycine-Generating Enzyme-Like Proteins Constitute a Novel Family of Widespread Type VI Secretion System Immunity Proteins.	Lopez J, Le NH, Moon KH, Salomon D, Bosis E, Feldman MF.	J Bacteriol	10.1128/jb.00281-21	2021
	A host-specific diaminobutyrate aminotransferase contributes to symbiotic performance, homoserine metabolism, and competitiveness in the Rhizobium leguminosarum/Pisum sativum system.	Ballesteros-Gutierrez M, Albareda M, Barbas C, Lopez-Gonzalvez A, Dunn MF, Palacios JM.	Front Microbiol	10.3389/fmicb.2023.1182563	2023
Metabolism	The Phospholipid:Diacylglycerol Acyltransferase-Mediated Acyl-Coenzyme A-Independent Pathway Efficiently Diverts Fatty Acid Flux from Phospholipid into Triacylglycerol in Escherichia coli.	Wang L, Jiang S, Chen WC, Zhou XR, Huang TX, Huang FH, Wan X.	Appl Environ Microbiol	10.1128/aem.00999-20	2020
	The primary transcriptome, small RNAs and regulation of antimicrobial resistance in Acinetobacter baumannii ATCC 17978.	Kroger C, MacKenzie KD, Alshabib EY, Kirzinger MWB, Suchan DM, Chao TC, Akulova V, Miranda-CasoLuengo AA, Monzon VA, Conway T, Sivasankaran SK, Hinton JCD, Hokamp K, Cameron ADS.	Nucleic Acids Res	10.1093/nar/gky603	2018
	Terminalia chebula Retz. Fruit Extracts Inhibit Bacterial Triggers of Some Autoimmune Diseases and Potentiate the Activity of Tetracycline.	Mandeville A, Cock IE.	Indian J Microbiol	10.1007/s12088-018-0754-9	2018
	Vitamin B₁₂-auxotrophy in dinoflagellates caused by incomplete or absent cobalamin-independent methionine synthase genes (metE).	Lin S, Hu Z, Song X, Gobler CJ, Tang YZ.	Fundam Res	10.1016/j.fmre.2021.12.014	2022
	Identification of a Small Molecule Activator for AphB, a LysR-Type Virulence Transcriptional Regulator in Vibrio cholerae.	Privett BR, Pellegrini M, Kovacikova G, Taylor RK, Skorupski K, Mierke D, Kull FJ.	Biochemistry	10.1021/acs.biochem.7b00337	2017
Metabolism	Pilus Production in Acinetobacter baumannii Is Growth Phase Dependent and Essential for Natural Transformation.	Vesel N, Blokesch M.	J Bacteriol	10.1128/jb.00034-21	2021
Metabolism	A Disjointed Pathway for Malonate Degradation by Rhodopseudomonas palustris.	Wang Z, Wen Q, Harwood CS, Liang B, Yang J.	Appl Environ Microbiol	10.1128/aem.00631-20	2020
	A Mini-ISY100 Transposon Delivery System Effective in gamma Proteobacteria.	Conte E, Mende L, Grainge I, Colloms SD.	Front Microbiol	10.3389/fmicb.2019.00280	2019
Metabolism	Identification and characterization of a carnitine transporter in Acinetobacter baumannii.	Breisch J, Waclawska I, Averhoff B.	Microbiologyopen	10.1002/mbo3.752	2019
	Sequence-based information-theoretic features for gene essentiality prediction.	Nigatu D, Sobetzko P, Yousef M, Henkel W.	BMC Bioinformatics	10.1186/s12859-017-1884-5	2017
	Microfluidic approaches in microbial ecology.	Ugolini GS, Wang M, Secchi E, Pioli R, Ackermann M, Stocker R.	Lab Chip	10.1039/d3lc00784g	2024
	Frequency, composition and mobility of Escherichia coli-derived transposable elements in holdings of plasmid repositories.	Brkljacic J, Wittler B, Lindsey BE, Ganeshan VD, Sovic MG, Niehaus J, Ajibola W, Bachle SM, Feher T, Somers DE.	Microb Biotechnol	10.1111/1751-7915.13962	2022
	Interbacterial Transfer of Carbapenem Resistance and Large Antibiotic Resistance Islands by Natural Transformation in Pathogenic Acinetobacter.	Godeux AS, Svedholm E, Barreto S, Potron A, Venner S, Charpentier X, Laaberki MH.	mBio	10.1128/mbio.02631-21	2022
	Two novel cyanobacterial alpha-dioxygenases for the biosynthesis of fatty aldehydes.	Kim IJ, Brack Y, Bayer T, Bornscheuer UT.	Appl Microbiol Biotechnol	10.1007/s00253-021-11724-x	2022
	Incorporation of Plasmid DNA Into Bacterial Membrane Vesicles by Peptidoglycan Defects in Escherichia coli.	Aktar S, Okamoto Y, Ueno S, Tahara YO, Imaizumi M, Shintani M, Miyata M, Futamata H, Nojiri H, Tashiro Y.	Front Microbiol	10.3389/fmicb.2021.747606	2021
Enzymology	Host plants influence the composition of the gut bacteria in Henosepilachna vigintioctopunctata.	Lu J, Guo W, Chen S, Guo M, Qiu B, Yang C, Lian T, Pan H.	PLoS One	10.1371/journal.pone.0224213	2019
	Longitudinal Single-Cell Imaging of Engineered Strains with Stimulated Raman Scattering to Characterize Heterogeneity in Fatty Acid Production.	Tague N, Lin H, Lugagne JB, O'Connor OM, Burman D, Wong WW, Cheng JX, Dunlop MJ.	Adv Sci (Weinh)	10.1002/advs.202206519	2023
Enzymology	Identification of a residue affecting fatty alcohol selectivity in wax ester synthase.	Barney BM, Mann RL, Ohlert JM.	Appl Environ Microbiol	10.1128/aem.02523-12	2013
	Engineering an Alcohol-Forming Fatty Acyl-CoA Reductase for Aldehyde and Hydrocarbon Biosynthesis in Saccharomyces cerevisiae.	Foo JL, Rasouliha BH, Susanto AV, Leong SSJ, Chang MW.	Front Bioeng Biotechnol	10.3389/fbioe.2020.585935	2020
	Elucidation of salicylate attachment in celesticetin biosynthesis opens the door to create a library of more efficient hybrid lincosamide antibiotics.	Kadlcik S, Kamenik Z, Vasek D, Nedved M, Janata J.	Chem Sci	10.1039/c6sc04235j	2017
	Mechanisms underlying interactions between two abundant oral commensal bacteria.	Perera D, McLean A, Morillo-Lopez V, Cloutier-Leblanc K, Almeida E, Cabana K, Mark Welch J, Ramsey M.	ISME J	10.1038/s41396-021-01141-3	2022
	Inter-species population dynamics enhance microbial horizontal gene transfer and spread of antibiotic resistance.	Cooper RM, Tsimring L, Hasty J.	Elife	10.7554/elife.25950	2017
	Genetic code ambiguity confers a selective advantage on Acinetobacter baylyi.	Bacher JM, Waas WF, Metzgar D, de Crecy-Lagard V, Schimmel P.	J Bacteriol	10.1128/jb.00622-07	2007
Metabolism	Improved triacylglycerol production in Acinetobacter baylyi ADP1 by metabolic engineering.	Santala S, Efimova E, Kivinen V, Larjo A, Aho T, Karp M, Santala V.	Microb Cell Fact	10.1186/1475-2859-10-36	2011
Metabolism	De novo biosynthesis of biodiesel by Escherichia coli in optimized fed-batch cultivation.	Duan Y, Zhu Z, Cai K, Tan X, Lu X.	PLoS One	10.1371/journal.pone.0020265	2011
	Metabolic adaptation to vitamin auxotrophy by leaf-associated bacteria.	Ryback B, Bortfeld-Miller M, Vorholt JA.	ISME J	10.1038/s41396-022-01303-x	2022
	Boosting the free fatty acid synthesis of Escherichia coli by expression of a cytosolic Acinetobacter baylyi thioesterase.	Zheng Y, Li L, Liu Q, Qin W, Yang J, Cao Y, Jiang X, Zhao G, Xian M.	Biotechnol Biofuels	10.1186/1754-6834-5-76	2012
	Development of a Biosensor for Detection of Benzoic Acid Derivatives in Saccharomyces cerevisiae.	Castano-Cerezo S, Fournie M, Urban P, Faulon JL, Truan G.	Front Bioeng Biotechnol	10.3389/fbioe.2019.00372	2019
	The Transformation Experiment of Frederick Griffith I: Its Narrowing and Potential for the Creation of Novel Microorganisms.	Muller GA.	Bioengineering (Basel)	10.3390/bioengineering12030324	2025
Metabolism	Novel Metabolic Pathways and Regulons for Hexuronate Utilization in Proteobacteria.	Bouvier JT, Sernova NV, Ghasempur S, Rodionova IA, Vetting MW, Al-Obaidi NF, Almo SC, Gerlt JA, Rodionov DA.	J Bacteriol	10.1128/jb.00431-18	2019
	A Novel Genome-Editing Platform for Drug-Resistant Acinetobacter baumannii Reveals an AdeR-Unrelated Tigecycline Resistance Mechanism.	Trebosc V, Gartenmann S, Royet K, Manfredi P, Totzl M, Schellhorn B, Pieren M, Tigges M, Lociuro S, Sennhenn PC, Gitzinger M, Bumann D, Kemmer C.	Antimicrob Agents Chemother	10.1128/aac.01275-16	2016
Pathogenicity	Single-step selection of drug resistant Acinetobacter baylyi ADP1 mutants reveals a functional redundancy in the recruitment of multidrug efflux systems.	Brzoska AJ, Hassan KA, de Leon EJ, Paulsen IT, Lewis PJ.	PLoS One	10.1371/journal.pone.0056090	2013
	The mechanism for polar localization of the type IVa pilus machine in Myxococcus xanthus.	Herfurth M, Perez-Burgos M, Sogaard-Andersen L.	mBio	10.1128/mbio.01593-23	2023
	Cloning, expression, crystallization and crystallographic analysis of CouR from Rhodopseudomonas palustris.	Pan C, Hu YL, Jiang XN, Gai Y.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x15018968	2015
	The Pseudomonas aeruginosa T6SS Delivers a Periplasmic Toxin that Disrupts Bacterial Cell Morphology.	Wood TE, Howard SA, Forster A, Nolan LM, Manoli E, Bullen NP, Yau HCL, Hachani A, Hayward RD, Whitney JC, Vollmer W, Freemont PS, Filloux A.	Cell Rep	10.1016/j.celrep.2019.08.094	2019
Metabolism	Bacterial natural transformation by highly fragmented and damaged DNA.	Overballe-Petersen S, Harms K, Orlando LA, Mayar JV, Rasmussen S, Dahl TW, Rosing MT, Poole AM, Sicheritz-Ponten T, Brunak S, Inselmann S, de Vries J, Wackernagel W, Pybus OG, Nielsen R, Johnsen PJ, Nielsen KM, Willerslev E.	Proc Natl Acad Sci U S A	10.1073/pnas.1315278110	2013
Pathogenicity	A Nonlive Preparation of Chromobacterium sp. Panama (Csp_P) Is a Highly Effective Larval Mosquito Biopesticide.	Caragata EP, Otero LM, Carlson JS, Borhani Dizaji N, Dimopoulos G.	Appl Environ Microbiol	10.1128/aem.00240-20	2020
	Competitive advantage of oxygen-tolerant bioanodes of Geobacter sulfurreducens in bioelectrochemical systems.	Speers AM, Reguera G.	Biofilm	10.1016/j.bioflm.2021.100052	2021
	A Novel Peptide Nucleic Acid against the Cytidine Monophosphate Kinase of S. aureus Inhibits Staphylococcal Infection In Vivo.	Lee HT, Kim SK, Lee JB, Yoon JW.	Mol Ther Nucleic Acids	10.1016/j.omtn.2019.08.021	2019
Metabolism	Function of a glutamine synthetase-like protein in bacterial aniline oxidation via gamma-glutamylanilide.	Takeo M, Ohara A, Sakae S, Okamoto Y, Kitamura C, Kato D, Negoro S.	J Bacteriol	10.1128/jb.00397-13	2013
	Substitutions of short heterologous DNA segments of intragenomic or extragenomic origins produce clustered genomic polymorphisms.	Harms K, Lunnan A, Hulter N, Mourier T, Vinner L, Andam CP, Marttinen P, Fridholm H, Hansen AJ, Hanage WP, Nielsen KM, Willerslev E, Johnsen PJ.	Proc Natl Acad Sci U S A	10.1073/pnas.1615819114	2016
	Automated Cell Treatment for Competence and Transformation of Escherichia coli in a High-Throughput Quasi-Turbidostat Using Microtiter Plates.	Hans S, Gimpel M, Glauche F, Neubauer P, Cruz-Bournazou MN.	Microorganisms	10.3390/microorganisms6030060	2018
	Bats (Mammalia: Chiroptera) in urban-rural interfaces: community structure associated with pathogen screening in São Paulo-the largest metropolitan region in Brazil.	Brito JEC, de Mello BGV, Gaeta NC, Batista JMN, Brito TR, Agostinho WC, Brandao PE, Heinemann MB, Dias RA.	Vet Res Commun	10.1007/s11259-023-10112-2	2023
	Acinetobacter baylyi as a pathogen for opportunistic infection.	Chen TL, Siu LK, Lee YT, Chen CP, Huang LY, Wu RC, Cho WL, Fung CP.	J Clin Microbiol	10.1128/jcm.00232-08	2008
	IS26 Veers Genomic Plasticity and Genetic Rearrangement toward Carbapenem Hyperresistance under Sublethal Antibiotics.	Wei DW, Wong NK, Song Y, Zhang G, Wang C, Li J, Feng J.	mBio	10.1128/mbio.03340-21	2021
Metabolism	Visual evidence of horizontal gene transfer between plants and bacteria in the phytosphere of transplastomic tobacco.	Pontiroli A, Rizzi A, Simonet P, Daffonchio D, Vogel TM, Monier JM.	Appl Environ Microbiol	10.1128/aem.02632-08	2009
Metabolism	Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes.	Xavier JC, Patil KR, Rocha I.	PLoS Comput Biol	10.1371/journal.pcbi.1006556	2018
	The PilT retraction ATPase promotes both extension and retraction of the MSHA type IVa pilus in Vibrio cholerae.	Hughes HQ, Christman ND, Dalia TN, Ellison CK, Dalia AB.	PLoS Genet	10.1371/journal.pgen.1010561	2022
	Acquisition of a High Diversity of Bacteria during the Hajj Pilgrimage, Including Acinetobacter baumannii with blaOXA-72 and Escherichia coli with blaNDM-5 Carbapenemase Genes.	Leangapichart T, Gautret P, Griffiths K, Belhouchat K, Memish Z, Raoult D, Rolain JM.	Antimicrob Agents Chemother	10.1128/aac.00669-16	2016
Pathogenicity	Repurposing Eukaryotic Kinase Inhibitors as Colistin Adjuvants in Gram-Negative Bacteria.	Barker WT, Nemeth AM, Brackett SM, Basak AK, Chandler CE, Jania LA, Zuercher WJ, Melander RJ, Koller BH, Ernst RK, Melander C.	ACS Infect Dis	10.1021/acsinfecdis.9b00212	2019
	T6SS secretes an LPS-binding effector to recruit OMVs for exploitative competition and horizontal gene transfer.	Li C, Zhu L, Wang D, Wei Z, Hao X, Wang Z, Li T, Zhang L, Lu Z, Long M, Wang Y, Wei G, Shen X.	ISME J	10.1038/s41396-021-01093-8	2022
	Crc Regulates Succinate-Mediated Repression of Mineral Phosphate Solubilization in Acinetobacter sp. SK2 by Modulating Membrane Glucose Dehydrogenase.	Bharwad K, Ghoghari N, Rajkumar S.	Front Microbiol	10.3389/fmicb.2021.641119	2021
Phylogeny	Naturally transformable Acinetobacter sp. strain ADP1 belongs to the newly described species Acinetobacter baylyi.	Vaneechoutte M, Young DM, Ornston LN, De Baere T, Nemec A, Van Der Reijden T, Carr E, Tjernberg I, Dijkshoorn L.	Appl Environ Microbiol	10.1128/aem.72.1.932-936.2006	2006
Metabolism	The type IV pilus protein PilU functions as a PilT-dependent retraction ATPase.	Adams DW, Pereira JM, Stoudmann C, Stutzmann S, Blokesch M.	PLoS Genet	10.1371/journal.pgen.1008393	2019
Pathogenicity	Genes involved in intrinsic antibiotic resistance of Acinetobacter baylyi.	Gomez MJ, Neyfakh AA.	Antimicrob Agents Chemother	10.1128/aac.00579-06	2006
	Role of Escherichia coli in Biofuel Production.	Koppolu V, Vasigala VK.	Microbiol Insights	10.4137/mbi.s10878	2016
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	Gene transfer potential of outer membrane vesicles of Acinetobacter baylyi and effects of stress on vesiculation.	Fulsundar S, Harms K, Flaten GE, Johnsen PJ, Chopade BA, Nielsen KM.	Appl Environ Microbiol	10.1128/aem.04248-13	2014
Genetics	The use of Oxford Nanopore native barcoding for complete genome assembly.	Bayliss SC, Hunt VL, Yokoyama M, Thorpe HA, Feil EJ.	Gigascience	10.1093/gigascience/gix001	2017
Metabolism	PAAR-repeat proteins sharpen and diversify the type VI secretion system spike.	Shneider MM, Buth SA, Ho BT, Basler M, Mekalanos JJ, Leiman PG.	Nature	10.1038/nature12453	2013
	Lack of detectable DNA uptake by transformation of selected recipients in mono-associated rats.	Wilcks A, Jacobsen BB.	BMC Res Notes	10.1186/1756-0500-3-49	2010
	Microbial diversity and ecotoxicity of sediments 3 years after the Jiaozhou Bay oil spill.	Gao W, Yin X, Mi T, Zhang Y, Lin F, Han B, Zhao X, Luan X, Cui Z, Zheng L.	AMB Express	10.1186/s13568-018-0603-6	2018
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Genetics	Non-canonical LexA proteins regulate the SOS response in the Bacteroidetes.	Sanchez-Osuna M, Cortes P, Lee M, Smith AT, Barbe J, Erill I.	Nucleic Acids Res	10.1093/nar/gkab773	2021
Enzymology	Structure and kinetics of indole-3-glycerol phosphate synthase from Pseudomonas aeruginosa: Decarboxylation is not essential for indole formation.	Soderholm A, Newton MS, Patrick WM, Selmer M.	J Biol Chem	10.1074/jbc.ra120.014936	2020
Metabolism	Role of Acinetobacter baylyi Crc in catabolite repression of enzymes for aromatic compound catabolism.	Zimmermann T, Sorg T, Siehler SY, Gerischer U.	J Bacteriol	10.1128/jb.00817-08	2009
Metabolism	Non-additive microbial community responses to environmental complexity.	Pacheco AR, Osborne ML, Segre D.	Nat Commun	10.1038/s41467-021-22426-3	2021
Metabolism	Dynamic Control of Gene Expression with Riboregulated Switchable Feedback Promoters.	Glasscock CJ, Biggs BW, Lazar JT, Arnold JH, Burdette LA, Valdes A, Kang MK, Tullman-Ercek D, Tyo KEJ, Lucks JB.	ACS Synth Biol	10.1021/acssynbio.1c00015	2021
	Contamination, Sources, and Health Risks Associated with Soil PAHs in Rebuilt Land from a Coking Plant, Beijing, China.	Cao W, Yin L, Zhang D, Wang Y, Yuan J, Zhu Y, Dou J.	Int J Environ Res Public Health	10.3390/ijerph16040670	2019
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	The P. aeruginosa effector Tse5 forms membrane pores disrupting the membrane potential of intoxicated bacteria.	Gonzalez-Magana A, Altuna J, Queralt-Martin M, Largo E, Velazquez C, Montanchez I, Bernal P, Alcaraz A, Albesa-Jove D.	Commun Biol	10.1038/s42003-022-04140-y	2022
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	Leveraging host metabolism for bisdemethoxycurcumin production in Pseudomonas putida.	Incha MR, Thompson MG, Blake-Hedges JM, Liu Y, Pearson AN, Schmidt M, Gin JW, Petzold CJ, Deutschbauer AM, Keasling JD.	Metab Eng Commun	10.1016/j.mec.2019.e00119	2020
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	Horizontal Gene Transfer of Antibiotic Resistance Genes in Biofilms.	Michaelis C, Grohmann E.	Antibiotics (Basel)	10.3390/antibiotics12020328	2023
	Identification of bacterial protein O-oligosaccharyltransferases and their glycoprotein substrates.	Schulz BL, Jen FE, Power PM, Jones CE, Fox KL, Ku SC, Blanchfield JT, Jennings MP.	PLoS One	10.1371/journal.pone.0062768	2013
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Genetics	Towards a 'chassis' for bacterial magnetosome biosynthesis: genome streamlining of Magnetospirillum gryphiswaldense by multiple deletions.	Zwiener T, Dziuba M, Mickoleit F, Ruckert C, Busche T, Kalinowski J, Uebe R, Schuler D.	Microb Cell Fact	10.1186/s12934-021-01517-2	2021
	Effect of Nutritional Determinants and TonB on the Natural Transformation of Riemerella anatipestifer.	Zhang L, Huang L, Huang M, Wang M, Zhu D, Wang M, Jia R, Chen S, Zhao X, Yang Q, Wu Y, Zhang S, Huang J, Ou X, Mao S, Gao Q, Tian B, Cheng A, Liu M.	Front Microbiol	10.3389/fmicb.2021.644868	2021
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Metabolism	Metabolic Exchange and Energetic Coupling between Nutritionally Stressed Bacterial Species: Role of Quorum-Sensing Molecules.	Ranava D, Backes C, Karthikeyan G, Ouari O, Soric A, Guiral M, Cardenas ML, Giudici-Orticoni MT.	mBio	10.1128/mbio.02758-20	2021
Metabolism	Tit-for-tat: type VI secretion system counterattack during bacterial cell-cell interactions.	Basler M, Ho BT, Mekalanos JJ.	Cell	10.1016/j.cell.2013.01.042	2013
Metabolism	Metabolic adaptations underlying genome flexibility in prokaryotes.	Goyal A.	PLoS Genet	10.1371/journal.pgen.1007763	2018
Phylogeny	Antibiotic discovery throughout the Small World Initiative: A molecular strategy to identify biosynthetic gene clusters involved in antagonistic activity.	Davis E, Sloan T, Aurelius K, Barbour A, Bodey E, Clark B, Dennis C, Drown R, Fleming M, Humbert A, Glasgo E, Kerns T, Lingro K, McMillin M, Meyer A, Pope B, Stalevicz A, Steffen B, Steindl A, Williams C, Wimberley C, Zenas R, Butela K, Wildschutte H.	Microbiologyopen	10.1002/mbo3.435	2017
Transcriptome	Transcriptome Analysis of Jojoba (Simmondsia chinensis) during Seed Development and Liquid Wax Ester Biosynthesis.	Alotaibi SS, Elseehy MM, Aljuaid BS, El-Shehawi AM.	Plants (Basel)	10.3390/plants9050588	2020
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Metabolism	Environmental Spread of New Delhi Metallo-beta-Lactamase-1-Producing Multidrug-Resistant Bacteria in Dhaka, Bangladesh.	Islam MA, Islam M, Hasan R, Hossain MI, Nabi A, Rahman M, Goessens WHF, Endtz HP, Boehm AB, Faruque SM.	Appl Environ Microbiol	10.1128/aem.00793-17	2017
Metabolism	Responsiveness of Aromatoleum aromaticum EbN1^T to Lignin-Derived Phenylpropanoids.	Vagts J, Kalvelage K, Weiten A, Buschen R, Gutsch J, Scheve S, Wohlbrand L, Diener S, Wilkes H, Winklhofer M, Rabus R.	Appl Environ Microbiol	10.1128/aem.03140-20	2021
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Metabolism	Transcriptomic and biochemical analyses identify a family of chlorhexidine efflux proteins.	Hassan KA, Jackson SM, Penesyan A, Patching SG, Tetu SG, Eijkelkamp BA, Brown MH, Henderson PJ, Paulsen IT.	Proc Natl Acad Sci U S A	10.1073/pnas.1317052110	2013
	Potential therapeutic drug target identification in Community Acquired-Methicillin Resistant Staphylococcus aureus (CA-MRSA) using computational analysis.	Yadav PK, Singh G, Singh S, Gautam B, Saad EI.	Bioinformation	10.6026/97320630008664	2012
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Metabolism	Stressed out: Bacterial response to high salinity using compatible solute biosynthesis and uptake systems, lessons from Vibrionaceae.	Gregory GJ, Boyd EF.	Comput Struct Biotechnol J	10.1016/j.csbj.2021.01.030	2021
Pathogenicity	Galleria mellonella as a model system to study Acinetobacter baumannii pathogenesis and therapeutics.	Peleg AY, Jara S, Monga D, Eliopoulos GM, Moellering RC, Mylonakis E.	Antimicrob Agents Chemother	10.1128/aac.01533-08	2009
Metabolism	Bacillus subtilis FolE is sustained by the ZagA zinc metallochaperone and the alarmone ZTP under conditions of zinc deficiency.	Chandrangsu P, Huang X, Gaballa A, Helmann JD.	Mol Microbiol	10.1111/mmi.14314	2019
Pathogenicity	Miltefosine Reduces the Cytolytic Activity and Virulence of Acinetobacter baumannii.	Fiester SE, Arivett BA, Beckett AC, Wagner BR, Ohneck EJ, Schmidt RE, Grier JT, Actis LA.	Antimicrob Agents Chemother	10.1128/aac.01409-18	2019
Genetics	Role of Wax Ester Synthase/Acyl Coenzyme A:Diacylglycerol Acyltransferase in Oleaginous Streptomyces sp. Strain G25.	Rottig A, Strittmatter CS, Schauer J, Hiessl S, Poehlein A, Daniel R, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.01719-16	2016
Metabolism	Cell-based screen for discovering lipopolysaccharide biogenesis inhibitors.	Zhang G, Baidin V, Pahil KS, Moison E, Tomasek D, Ramadoss NS, Chatterjee AK, McNamara CW, Young TS, Schultz PG, Meredith TC, Kahne D.	Proc Natl Acad Sci U S A	10.1073/pnas.1804670115	2018
	Formaldehyde-responsive proteins, TtmR and EfgA, reveal a tradeoff between formaldehyde resistance and efficient transition to methylotrophy in Methylorubrum extorquens.	Bazurto JV, Bruger EL, Lee JA, Lambert LB, Marx CJ.	J Bacteriol	10.1128/jb.00589-20	2021
	Role of Recipient Susceptibility Factors During Contact-Dependent Interbacterial Competition.	Lin HH, Filloux A, Lai EM.	Front Microbiol	10.3389/fmicb.2020.603652	2020
	Strategy for in situ detection of natural transformation-based horizontal gene transfer events.	Rizzi A, Pontiroli A, Brusetti L, Borin S, Sorlini C, Abruzzese A, Sacchi GA, Vogel TM, Simonet P, Bazzicalupo M, Nielsen KM, Monier JM, Daffonchio D.	Appl Environ Microbiol	10.1128/aem.02185-07	2008
Genetics	CRISPR-interference-based modulation of mobile genetic elements in bacteria.	Nyerges A, Balint B, Cseklye J, Nagy I, Pal C, Feher T.	Synth Biol (Oxf)	10.1093/synbio/ysz008	2019
	Synthetic Mutualism and the Intervention Dilemma.	Denton JA, Gokhale CS.	Life (Basel)	10.3390/life9010015	2019
Genetics	MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.	Medigue C, Calteau A, Cruveiller S, Gachet M, Gautreau G, Josso A, Lajus A, Langlois J, Pereira H, Planel R, Roche D, Rollin J, Rouy Z, Vallenet D.	Brief Bioinform	10.1093/bib/bbx113	2019
	Light modulates important physiological features of Ralstonia pseudosolanacearum during the colonization of tomato plants.	Tano J, Ripa MB, Tondo ML, Carrau A, Petrocelli S, Rodriguez MV, Ferreira V, Siri MI, Piskulic L, Orellano EG.	Sci Rep	10.1038/s41598-021-93871-9	2021
	Leveraging substrate flexibility and product selectivity of acetogens in two-stage systems for chemical production.	Ricci L, Seifert A, Bernacchi S, Fino D, Pirri CF, Re A.	Microb Biotechnol	10.1111/1751-7915.14172	2023
Metabolism	Genetic cargo and bacterial species set the rate of vesicle-mediated horizontal gene transfer.	Tran F, Boedicker JQ.	Sci Rep	10.1038/s41598-017-07447-7	2017
	Bacterial recombination promotes the evolution of multi-drug-resistance in functionally diverse populations.	Perron GG, Lee AE, Wang Y, Huang WE, Barraclough TG.	Proc Biol Sci	10.1098/rspb.2011.1933	2012
	An inducible transposon mutagenesis approach for the intracellular human pathogen Chlamydia trachomatis.	O'Neill CE, Skilton RJ, Forster J, Cleary DW, Pearson SA, Lampe DJ, Thomson NR, Clarke IN.	Wellcome Open Res	10.12688/wellcomeopenres.16068.1	2021
	Characterization of a Novel Functional Trimeric Catechol 1,2-Dioxygenase From a Pseudomonas stutzeri Isolated From the Gulf of Mexico.	Rodriguez-Salazar J, Almeida-Juarez AG, Ornelas-Ocampo K, Millan-Lopez S, Raga-Carbajal E, Rodriguez-Mejia JL, Muriel-Millan LF, Godoy-Lozano EE, Rivera-Gomez N, Rudino-Pinera E, Pardo-Lopez L.	Front Microbiol	10.3389/fmicb.2020.01100	2020
	Chemical Composition, Antibacterial Activity, and Antibiotic Potentiation of Boswellia sacra Flueck. Oleoresin Extracts from the Dhofar Region of Oman.	Rashan L, White A, Haulet M, Favelin N, Das P, Cock IE.	Evid Based Complement Alternat Med	10.1155/2021/9918935	2021
	Rapid evolution of diminished transformability in Acinetobacter baylyi.	Bacher JM, Metzgar D, de Crecy-Lagard V.	J Bacteriol	10.1128/jb.00846-06	2006
	The global regulator Hfq exhibits far more extensive and intensive regulation than Crc in Pseudomonas protegens H78.	Wang Z, Huang X, Jan M, Kong D, Pan J, Zhang X.	Mol Plant Pathol	10.1111/mpp.13070	2021
	Cj1388 Is a RidA Homolog and Is Required for Flagella Biosynthesis and/or Function in Campylobacter jejuni.	Irons J, Sacher JC, Szymanski CM, Downs DM.	Front Microbiol	10.3389/fmicb.2019.02058	2019
	Tunable transcription factor library for robust quantification of regulatory properties in Escherichia coli.	Parisutham V, Chhabra S, Ali MZ, Brewster RC.	Mol Syst Biol	10.15252/msb.202110843	2022
	Sexual isolation in Acinetobacter baylyi is locus-specific and varies 10,000-fold over the genome.	Ray JL, Harms K, Wikmark OG, Starikova I, Johnsen PJ, Nielsen KM.	Genetics	10.1534/genetics.109.103127	2009
	Molecular Epidemiology of Acinetobacter calcoaceticus-Acinetobacter baumannii Complex Isolated From Children at the Hospital Infantil de México Federico Gómez.	Mancilla-Rojano J, Ochoa SA, Reyes-Grajeda JP, Flores V, Medina-Contreras O, Espinosa-Mazariego K, Parra-Ortega I, Rosa-Zamboni D, Castellanos-Cruz MDC, Arellano-Galindo J, Cevallos MA, Hernandez-Castro R, Xicohtencatl-Cortes J, Cruz-Cordova A.	Front Microbiol	10.3389/fmicb.2020.576673	2020
	Class 1 integrons are low-cost structures in Escherichia coli.	Lacotte Y, Ploy MC, Raherison S.	ISME J	10.1038/ismej.2017.38	2017
	A protocol for culturing environmental strains of the Buruli ulcer agent, Mycobacterium ulcerans.	Zingue D, Panda A, Drancourt M.	Sci Rep	10.1038/s41598-018-25278-y	2018
	Profiling bacterial communities by MinION sequencing of ribosomal operons.	Kerkhof LJ, Dillon KP, Haggblom MM, McGuinness LR.	Microbiome	10.1186/s40168-017-0336-9	2017
Transcriptome	Transcriptomic analysis of the oleaginous yeast Lipomyces starkeyi during lipid accumulation on enzymatically treated corn stover hydrolysate.	Pomraning KR, Collett JR, Kim J, Panisko EA, Culley DE, Dai Z, Deng S, Hofstad BA, Butcher MG, Magnuson JK.	Biotechnol Biofuels	10.1186/s13068-019-1510-z	2019
Genetics	A genomic view of experimental intraspecies and interspecies transformation of a rifampicin-resistance allele into Neisseria meningitidis.	Alfsnes K, Frye SA, Eriksson J, Eldholm V, Brynildsrud OB, Bohlin J, Harrison OB, Hood DW, Maiden MCJ, Tonjum T, Ambur OH.	Microb Genom	10.1099/mgen.0.000222	2018
	Prophage induction and differential RecA and UmuDAb transcriptome regulation in the DNA damage responses of Acinetobacter baumannii and Acinetobacter baylyi.	Hare JM, Ferrell JC, Witkowski TA, Grice AN.	PLoS One	10.1371/journal.pone.0093861	2014
	Inception Mechanisms of Tunneling Nanotubes.	Drab M, Stopar D, Kralj-Iglic V, Iglic A.	Cells	10.3390/cells8060626	2019
	The RpoN2-PilRX regulatory system governs type IV pilus gene transcription and is required for bacterial motility and virulence in Xanthomonas oryzae pv. oryzae.	Yu C, Nguyen DP, Ren Z, Liu J, Yang F, Tian F, Fan S, Chen H.	Mol Plant Pathol	10.1111/mpp.12920	2020
Phylogeny	Genome diversity of domesticated Acinetobacter baumannii ATCC 19606^T strains.	Artuso I, Lucidi M, Visaggio D, Capecchi G, Lugli GA, Ventura M, Visca P.	Microb Genom	10.1099/mgen.0.000749	2022
Genetics	Geptop: a gene essentiality prediction tool for sequenced bacterial genomes based on orthology and phylogeny.	Wei W, Ning LW, Ye YN, Guo FB.	PLoS One	10.1371/journal.pone.0072343	2013
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Genetics	High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies.	Aury JM, Cruaud C, Barbe V, Rogier O, Mangenot S, Samson G, Poulain J, Anthouard V, Scarpelli C, Artiguenave F, Wincker P.	BMC Genomics	10.1186/1471-2164-9-603	2008
	A condition-specific codon optimization approach for improved heterologous gene expression in Saccharomyces cerevisiae.	Lanza AM, Curran KA, Rey LG, Alper HS.	BMC Syst Biol	10.1186/1752-0509-8-33	2014
	Metabolic Engineering Strategies for Improved Lipid Production and Cellular Physiological Responses in Yeast Saccharomyces cerevisiae.	Jiang W, Li C, Li Y, Peng H.	J Fungi (Basel)	10.3390/jof8050427	2022
	Advances in the development and application of microbial consortia for metabolic engineering.	Jawed K, Yazdani SS, Koffas MA.	Metab Eng Commun	10.1016/j.mec.2019.e00095	2019
	Probing bacterial cell biology using image cytometry.	Cass JA, Stylianidou S, Kuwada NJ, Traxler B, Wiggins PA.	Mol Microbiol	10.1111/mmi.13591	2017
Enzymology	A trade-off between the fitness cost of functional integrases and long-term stability of integrons.	Starikova I, Harms K, Haugen P, Lunde TT, Primicerio R, Samuelsen O, Nielsen KM, Johnsen PJ.	PLoS Pathog	10.1371/journal.ppat.1003043	2012
Metabolism	The cyanobacterial protoporphyrinogen oxidase HemJ is a new b-type heme protein functionally coupled with coproporphyrinogen III oxidase.	Skotnicova P, Sobotka R, Shepherd M, Hajek J, Hrouzek P, Tichy M.	J Biol Chem	10.1074/jbc.ra118.003441	2018
	Redundancy and Specificity of Type VI Secretion vgrG Loci in Antibacterial Activity of Agrobacterium tumefaciens 1D1609 Strain.	Santos MNM, Cho ST, Wu CF, Chang CJ, Kuo CH, Lai EM.	Front Microbiol	10.3389/fmicb.2019.03004	2019
Metabolism	Identification of Novel Acinetobacter baumannii Type VI Secretion System Antibacterial Effector and Immunity Pairs.	Fitzsimons TC, Lewis JM, Wright A, Kleifeld O, Schittenhelm RB, Powell D, Harper M, Boyce JD.	Infect Immun	10.1128/iai.00297-18	2018
	One-step production of C6-C8 carboxylates by mixed culture solely grown on CO.	He P, Han W, Shao L, Lu F.	Biotechnol Biofuels	10.1186/s13068-017-1005-8	2018
Pathogenicity	Inhibition of Glutathione Biosynthesis Sensitizes Plasmodium berghei to Antifolates.	Songsungthong W, Koonyosying P, Uthaipibull C, Kamchonwongpaisan S.	Antimicrob Agents Chemother	10.1128/aac.01836-15	2016
	CO₂ to succinic acid - Estimating the potential of biocatalytic routes.	Liebal UW, Blank LM, Ebert BE.	Metab Eng Commun	10.1016/j.mec.2018.e00075	2018
	Integrons: Vehicles and pathways for horizontal dissemination in bacteria.	Domingues S, da Silva GJ, Nielsen KM.	Mob Genet Elements	10.4161/mge.22967	2012
Metabolism	Growth of Pseudomonas chloritidismutans AW-1(T) on n-alkanes with chlorate as electron acceptor.	Mehboob F, Junca H, Schraa G, Stams AJ.	Appl Microbiol Biotechnol	10.1007/s00253-009-1985-9	2009
	Maintenance of Microbial Cooperation Mediated by Public Goods in Single- and Multiple-Trait Scenarios	Ozkaya O, Xavier KB, Dionisio F, Balbontin R.	J Bacteriol	10.1128/jb.00297-17	2017
	Diet breadth and exploitation of exotic plants shift the core microbiome of Cephaloleia, a group of tropical herbivorous beetles.	Blankenchip CL, Michels DE, Braker HE, Goffredi SK.	PeerJ	10.7717/peerj.4793	2018
	Identification of Trans-4-Hydroxy-L-Proline as a Compatible Solute and Its Biosynthesis and Molecular Characterization in Halobacillus halophilus.	Kim KH, Jia B, Jeon CO.	Front Microbiol	10.3389/fmicb.2017.02054	2017
	Adaptive bacterial response to low level chlorhexidine exposure and its implications for hand hygiene.	Kampf G.	Microb Cell	10.15698/mic2019.07.683	2019
	Quantitative contribution of efflux to multi-drug resistance of clinical Escherichia coli and Pseudomonas aeruginosa strains.	Cunrath O, Meinel DM, Maturana P, Fanous J, Buyck JM, Saint Auguste P, Seth-Smith HMB, Korner J, Dehio C, Trebosc V, Kemmer C, Neher R, Egli A, Bumann D.	EBioMedicine	10.1016/j.ebiom.2019.02.061	2019
Pathogenicity	Determination of antibiotic hypersensitivity among 4,000 single-gene-knockout mutants of Escherichia coli.	Tamae C, Liu A, Kim K, Sitz D, Hong J, Becket E, Bui A, Solaimani P, Tran KP, Yang H, Miller JH.	J Bacteriol	10.1128/jb.01982-07	2008
	New Shuttle Vectors for Real-Time Gene Expression Analysis in Multidrug-Resistant Acinetobacter Species: In Vitro and In Vivo Responses to Environmental Stressors.	Lucidi M, Visaggio D, Prencipe E, Imperi F, Rampioni G, Cincotti G, Leoni L, Visca P.	Appl Environ Microbiol	10.1128/aem.01334-19	2019
	Virus-induced genetics revealed by multidimensional precision medicine transcriptional workflow applicable to COVID-19.	Prokop JW, Shankar R, Gupta R, Leimanis ML, Nedveck D, Uhl K, Chen B, Hartog NL, Van Veen J, Sisco JS, Sirpilla O, Lydic T, Boville B, Hernandez A, Braunreiter C, Kuk CC, Singh V, Mills J, Wegener M, Adams M, Rhodes M, Bachmann AS, Pan W, Byrne-Steele ML, Smith DC, Depinet M, Brown BE, Eisenhower M, Han J, Haw M, Madura C, Sanfilippo DJ, Seaver LH, Bupp C, Rajasekaran S.	Physiol Genomics	10.1152/physiolgenomics.00045.2020	2020
Enzymology	Engineered cyanophycin synthetase (CphA) from Nostoc ellipsosporum confers enhanced CphA activity and cyanophycin accumulation to Escherichia coli.	Hai T, Frey KM, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.01132-06	2006
Metabolism	Multiple-level regulation of genes for protocatechuate degradation in Acinetobacter baylyi includes cross-regulation.	Siehler SY, Dal S, Fischer R, Patz P, Gerischer U.	Appl Environ Microbiol	10.1128/aem.01608-06	2007
Metabolism	Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen.	Muir A, Gurung I, Cehovin A, Bazin A, Vallenet D, Pelicic V.	Nat Commun	10.1038/s41467-020-19347-y	2020
	Flower-like patterns in multi-species bacterial colonies.	Xiong L, Cao Y, Cooper R, Rappel WJ, Hasty J, Tsimring L.	Elife	10.7554/elife.48885	2020
Biotechnology	Evaluating the probability of CRISPR-based gene drive contaminating another species.	Courtier-Orgogozo V, Danchin A, Gouyon PH, Boete C.	Evol Appl	10.1111/eva.12939	2020
Phylogeny	From Plant Infectivity to Growth Patterns: The Role of Blue-Light Sensing in the Prokaryotic World.	Losi A, Mandalari C, Gartner W.	Plants (Basel)	10.3390/plants3010070	2014
Pathogenicity	OXA-235, a novel class D beta-lactamase involved in resistance to carbapenems in Acinetobacter baumannii.	Higgins PG, Perez-Llarena FJ, Zander E, Fernandez A, Bou G, Seifert H.	Antimicrob Agents Chemother	10.1128/aac.02413-12	2013
Metabolism	Mechanistic Insights into the Metal-Dependent Activation of Zn^II-Dependent Metallochaperones.	Jordan MR, Wang J, Weiss A, Skaar EP, Capdevila DA, Giedroc DP.	Inorg Chem	10.1021/acs.inorgchem.9b01173	2019
Metabolism	Solution structure and properties of AlgH from Pseudomonas aeruginosa.	Urbauer JL, Cowley AB, Broussard HP, Niedermaier HT, Bieber Urbauer RJ.	Proteins	10.1002/prot.24811	2015
Metabolism	Identification of a Formate-Dependent Uric Acid Degradation Pathway in Escherichia coli.	Iwadate Y, Kato JI.	J Bacteriol	10.1128/jb.00573-18	2019
Metabolism	Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data.	Durot M, Le Fevre F, de Berardinis V, Kreimeyer A, Vallenet D, Combe C, Smidtas S, Salanoubat M, Weissenbach J, Schachter V.	BMC Syst Biol	10.1186/1752-0509-2-85	2008
Metabolism	Characterization of an allylic/benzyl alcohol dehydrogenase from Yokenella sp. strain WZY002, an organism potentially useful for the synthesis of alpha,beta-unsaturated alcohols from allylic aldehydes and ketones.	Ying X, Wang Y, Xiong B, Wu T, Xie L, Yu M, Wang Z.	Appl Environ Microbiol	10.1128/aem.03980-13	2014
Metabolism	Genomic and transcriptomic analysis of the toluene degrading black yeast Cladophialophora immunda.	Blasi B, Tafer H, Kustor C, Poyntner C, Lopandic K, Sterflinger K.	Sci Rep	10.1038/s41598-017-11807-8	2017
Metabolism	Interspecies nutrient extraction and toxin delivery between bacteria.	Stempler O, Baidya AK, Bhattacharya S, Malli Mohan GB, Tzipilevich E, Sinai L, Mamou G, Ben-Yehuda S.	Nat Commun	10.1038/s41467-017-00344-7	2017
	Stepwise metabolic engineering of Escherichia coli to produce triacylglycerol rich in medium-chain fatty acids.	Xu L, Wang L, Zhou XR, Chen WC, Singh S, Hu Z, Huang FH, Wan X.	Biotechnol Biofuels	10.1186/s13068-018-1177-x	2018
	Bacterial conversion of depolymerized Kraft lignin.	Ravi K, Abdelaziz OY, Nobel M, Garcia-Hidalgo J, Gorwa-Grauslund MF, Hulteberg CP, Liden G.	Biotechnol Biofuels	10.1186/s13068-019-1397-8	2019
Pathogenicity	The ecological impact of a bacterial weapon: microbial interactions and the Type VI secretion system.	Gallegos-Monterrosa R, Coulthurst SJ.	FEMS Microbiol Rev	10.1093/femsre/fuab033	2021
Enzymology	Process optimization for production and purification of a thermostable, organic solvent tolerant lipase from Acinetobacter sp. AU07.	Gururaj P, Ramalingam S, Nandhini Devi G, Gautam P.	Braz J Microbiol	10.1016/j.bjm.2015.04.002	2016
	Differential Protein Expression During Growth on Medium Versus Long-Chain Alkanes in the Obligate Marine Hydrocarbon-Degrading Bacterium Thalassolituus oleivorans MIL-1.	Gregson BH, Metodieva G, Metodiev MV, Golyshin PN, McKew BA.	Front Microbiol	10.3389/fmicb.2018.03130	2018
Metabolism	Genomics-driven reconstruction of acinetobacter NAD metabolism: insights for antibacterial target selection.	Sorci L, Blaby I, De Ingeniis J, Gerdes S, Raffaelli N, de Crecy Lagard V, Osterman A.	J Biol Chem	10.1074/jbc.m110.185629	2010
Metabolism	Protein determinants of dissemination and host specificity of metallo-beta-lactamases.	Lopez C, Ayala JA, Bonomo RA, Gonzalez LJ, Vila AJ.	Nat Commun	10.1038/s41467-019-11615-w	2019
Metabolism	Multiple pathways for triacylglycerol biosynthesis in Streptomyces coelicolor.	Arabolaza A, Rodriguez E, Altabe S, Alvarez H, Gramajo H.	Appl Environ Microbiol	10.1128/aem.02638-07	2008
	CEG: a database of essential gene clusters.	Ye YN, Hua ZG, Huang J, Rao N, Guo FB.	BMC Genomics	10.1186/1471-2164-14-769	2013
	Type VI secretion system sheaths as nanoparticles for antigen display.	Del Tordello E, Danilchanka O, McCluskey AJ, Mekalanos JJ.	Proc Natl Acad Sci U S A	10.1073/pnas.1524290113	2016
Phylogeny	Sequencing of the rpoB gene and flanking spacers for molecular identification of Acinetobacter species.	La Scola B, Gundi VA, Khamis A, Raoult D.	J Clin Microbiol	10.1128/jcm.44.3.827-832.2006	2006
Biotechnology	Genetically encoded sensors enable real-time observation of metabolite production.	Rogers JK, Church GM.	Proc Natl Acad Sci U S A	10.1073/pnas.1600375113	2016
Metabolism	Differences in substrate specificities of five bacterial wax ester synthases.	Barney BM, Wahlen BD, Garner E, Wei J, Seefeldt LC.	Appl Environ Microbiol	10.1128/aem.00534-12	2012
	Variations in metabolic pathways create challenges for automated metabolic reconstructions: Examples from the tetrahydrofolate synthesis pathway.	de Crecy-Lagard V.	Comput Struct Biotechnol J	10.1016/j.csbj.2014.05.008	2014
	Resistance to UV Irradiation Caused by Inactivation of nurA and herA Genes in Thermus thermophilus.	Fujii Y, Inoue M, Fukui K, Kuramitsu S, Masui R.	J Bacteriol	10.1128/jb.00201-18	2018
Metabolism	Production of fatty acid-derived oleochemicals and biofuels by synthetic yeast cell factories.	Zhou YJ, Buijs NA, Zhu Z, Qin J, Siewers V, Nielsen J.	Nat Commun	10.1038/ncomms11709	2016
	Structure of the regulatory domain of the LysR family regulator NMB2055 (MetR-like protein) from Neisseria meningitidis.	Sainsbury S, Ren J, Saunders NJ, Stuart DI, Owens RJ.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309112010603	2012
Pathogenicity	Insect-derived cecropins display activity against Acinetobacter baumannii in a whole-animal high-throughput Caenorhabditis elegans model.	Jayamani E, Rajamuthiah R, Larkins-Ford J, Fuchs BB, Conery AL, Vilcinskas A, Ausubel FM, Mylonakis E.	Antimicrob Agents Chemother	10.1128/aac.04198-14	2015
	Natural peptides and their synthetic congeners acting against Acinetobacter baumannii through the membrane and cell wall: latest progress.	Kumar G.	RSC Med Chem	10.1039/d4md00745j	2025
	An investigation of horizontal transfer of feed introduced DNA to the aerobic microbiota of the gastrointestinal tract of rats.	Nordgard L, Brusetti L, Raddadi N, Traavik T, Averhoff B, Nielsen KM.	BMC Res Notes	10.1186/1756-0500-5-170	2012
Pathogenicity	Evolution of carbapenem-resistant Acinetobacter baumannii revealed through whole-genome sequencing and comparative genomic analysis.	Li H, Liu F, Zhang Y, Wang X, Zhao C, Chen H, Zhang F, Zhu B, Hu Y, Wang H.	Antimicrob Agents Chemother	10.1128/aac.04609-14	2015
Phylogeny	Molecular and Biological Characterization of Ralstonia Phage RsoM1USA, a New Species of P2virus, Isolated in the United States.	Addy HS, Ahmad AA, Huang Q.	Front Microbiol	10.3389/fmicb.2019.00267	2019
Metabolism	The unusual glycine-rich C terminus of the Acinetobacter baumannii RNA chaperone Hfq plays an important role in bacterial physiology.	Sharma A, Dubey V, Sharma R, Devnath K, Gupta VK, Akhter J, Bhando T, Verma A, Ambatipudi K, Sarkar M, Pathania R.	J Biol Chem	10.1074/jbc.ra118.002921	2018
	Different adaptive strategies in E. coli populations evolving under macronutrient limitation and metal ion limitation.	Warsi OM, Andersson DI, Dykhuizen DE.	BMC Evol Biol	10.1186/s12862-018-1191-4	2018
	The thin pili of Acinetobacter sp. strain BD413 mediate adhesion to biotic and abiotic surfaces.	Gohl O, Friedrich A, Hoppert M, Averhoff B.	Appl Environ Microbiol	10.1128/aem.72.2.1394-1401.2006	2006
	Population-Dynamic Modeling of Bacterial Horizontal Gene Transfer by Natural Transformation.	Mao J, Lu T.	Biophys J	10.1016/j.bpj.2015.11.033	2016
Metabolism	Natural transformation facilitates transfer of transposons, integrons and gene cassettes between bacterial species.	Domingues S, Harms K, Fricke WF, Johnsen PJ, da Silva GJ, Nielsen KM.	PLoS Pathog	10.1371/journal.ppat.1002837	2012
Metabolism	Conservative sex and the benefits of transformation in Streptococcus pneumoniae.	Engelmoer DJ, Donaldson I, Rozen DE.	PLoS Pathog	10.1371/journal.ppat.1003758	2013
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Metabolism	Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities.	Germerodt S, Bohl K, Luck A, Pande S, Schroter A, Kaleta C, Schuster S, Kost C.	PLoS Comput Biol	10.1371/journal.pcbi.1004986	2016
Phylogeny	Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study.	Odamaki T, Kato K, Sugahara H, Hashikura N, Takahashi S, Xiao JZ, Abe F, Osawa R.	BMC Microbiol	10.1186/s12866-016-0708-5	2016
Metabolism	The dormancy-specific regulator, SutA, is intrinsically disordered and modulates transcription initiation in Pseudomonas aeruginosa.	Bergkessel M, Babin BM, VanderVelde D, Sweredoski MJ, Moradian A, Eggleston-Rangel R, Hess S, Tirrell DA, Artsimovitch I, Newman DK.	Mol Microbiol	10.1111/mmi.14337	2019
Pathogenicity	Amino Acid Substitutions Account for Most MexS Alterations in Clinical nfxC Mutants of Pseudomonas aeruginosa.	Richardot C, Juarez P, Jeannot K, Patry I, Plesiat P, Llanes C.	Antimicrob Agents Chemother	10.1128/aac.02622-15	2016
	In vivo-validated essential genes identified in Acinetobacter baumannii by using human ascites overlap poorly with essential genes detected on laboratory media.	Umland TC, Schultz LW, MacDonald U, Beanan JM, Olson R, Russo TA.	mBio	10.1128/mbio.00113-12	2012
Genetics	Towards the complete proteinaceous regulome of Acinetobacter baumannii.	Casella LG, Weiss A, Perez-Rueda E, Antonio Ibarra J, Shaw LN.	Microb Genom	10.1099/mgen.0.000107	2017
Metabolism	Acinetobacter baumannii can use multiple siderophores for iron acquisition, but only acinetobactin is required for virulence.	Sheldon JR, Skaar EP.	PLoS Pathog	10.1371/journal.ppat.1008995	2020
	Survival and DNA Damage in Plant Seeds Exposed for 558 and 682 Days outside the International Space Station.	Tepfer D, Leach S.	Astrobiology	10.1089/ast.2015.1457	2017
Metabolism	Structures of the inducer-binding domain of pentachlorophenol-degrading gene regulator PcpR from Sphingobium chlorophenolicum.	Hayes RP, Moural TW, Lewis KM, Onofrei D, Xun L, Kang C.	Int J Mol Sci	10.3390/ijms151120736	2014
	Staring at the cold sun: blue light regulation is distributed within the genus Acinetobacter.	Golic A, Vaneechoutte M, Nemec A, Viale AM, Actis LA, Mussi MA.	PLoS One	10.1371/journal.pone.0055059	2013
	Insights on the Horizontal Gene Transfer of Carbapenemase Determinants in the Opportunistic Pathogen Acinetobacter baumannii.	Da Silva GJ, Domingues S.	Microorganisms	10.3390/microorganisms4030029	2016
	A Novel C-Terminal Domain of RecJ is Critical for Interaction with HerA in Deinococcus radiodurans.	Cheng K, Zhao Y, Chen X, Li T, Wang L, Xu H, Tian B, Hua Y.	Front Microbiol	10.3389/fmicb.2015.01302	2015
Metabolism	A novel muconic acid biosynthesis approach by shunting tryptophan biosynthesis via anthranilate.	Sun X, Lin Y, Huang Q, Yuan Q, Yan Y.	Appl Environ Microbiol	10.1128/aem.00859-13	2013
	An ompR-envZ Two-Component System Ortholog Regulates Phase Variation, Osmotic Tolerance, Motility, and Virulence in Acinetobacter baumannii Strain AB5075.	Tipton KA, Rather PN.	J Bacteriol	10.1128/jb.00705-16	2017
	An MFS Transporter-Like ORF from MDR Acinetobacter baumannii AIIMS 7 Is Associated with Adherence and Biofilm Formation on Biotic/Abiotic Surface.	Sahu PK, Iyer PS, Gaikwad MB, Talreja SC, Pardesi KR, Chopade BA.	Int J Microbiol	10.1155/2012/490647	2012
Genetics	Comparative genomics of type VI secretion systems in strains of Pantoea ananatis from different environments.	Shyntum DY, Venter SN, Moleleki LN, Toth I, Coutinho TA.	BMC Genomics	10.1186/1471-2164-15-163	2014
	Stress-Induced, Highly Efficient, Donor Cell-Dependent Cell-to-Cell Natural Transformation in Bacillus subtilis.	Zhang X, Jin T, Deng L, Wang C, Zhang Y, Chen X.	J Bacteriol	10.1128/jb.00267-18	2018
	Identification of novel genes responsible for overexpression of ampC in Pseudomonas aeruginosa PAO1.	Tsutsumi Y, Tomita H, Tanimoto K.	Antimicrob Agents Chemother	10.1128/aac.01291-13	2013
Phylogeny	Identification of Acinetobacter species and genotyping of Acinetobacter baumannii by multilocus PCR and mass spectrometry.	Ecker JA, Massire C, Hall TA, Ranken R, Pennella TT, Agasino Ivy C, Blyn LB, Hofstadler SA, Endy TP, Scott PT, Lindler L, Hamilton T, Gaddy C, Snow K, Pe M, Fishbain J, Craft D, Deye G, Riddell S, Milstrey E, Petruccelli B, Brisse S, Harpin V, Schink A, Ecker DJ, Sampath R, Eshoo MW.	J Clin Microbiol	10.1128/jcm.00619-06	2006
Metabolism	The adnAB locus, encoding a putative helicase-nuclease activity, is essential in Streptomyces.	Zhang L, Nguyen HC, Chipot L, Piotrowski E, Bertrand C, Thibessard A, Leblond P.	J Bacteriol	10.1128/jb.01513-14	2014
Metabolism	Commensal Neisseria Kill Neisseria gonorrhoeae through a DNA-Dependent Mechanism.	Kim WJ, Higashi D, Goytia M, Rendon MA, Pilligua-Lucas M, Bronnimann M, McLean JA, Duncan J, Trees D, Jerse AE, So M.	Cell Host Microbe	10.1016/j.chom.2019.07.003	2019
Enzymology	Biochemical characterization of a new nicotinamidase from an unclassified bacterium thriving in a geothermal water stream microbial mat community.	Zapata-Perez R, Martinez-Monino AB, Garcia-Saura AG, Cabanes J, Takami H, Sanchez-Ferrer A.	PLoS One	10.1371/journal.pone.0181561	2017
	Staphylococcus aureus secretes immunomodulatory RNA and DNA via membrane vesicles.	Rodriguez BV, Kuehn MJ.	Sci Rep	10.1038/s41598-020-75108-3	2020
Metabolism	Ultrastructure of Shewanella oneidensis MR-1 nanowires revealed by electron cryotomography.	Subramanian P, Pirbadian S, El-Naggar MY, Jensen GJ.	Proc Natl Acad Sci U S A	10.1073/pnas.1718810115	2018
	Presence of Bacteroidales as a predictor of pathogens in surface waters of the central California coast.	Schriewer A, Miller WA, Byrne BA, Miller MA, Oates S, Conrad PA, Hardin D, Yang HH, Chouicha N, Melli A, Jessup D, Dominik C, Wuertz S.	Appl Environ Microbiol	10.1128/aem.00635-10	2010
	Earthworm symbiont Verminephrobacter eiseniae mediates natural transformation within host egg capsules using type IV pili.	Davidson SK, Dulla GF, Go RA, Stahl DA, Pinel N.	Front Microbiol	10.3389/fmicb.2014.00546	2014
	Abiotic Gene Transfer: Rare or Rampant?	Kotnik T, Weaver JC.	J Membr Biol	10.1007/s00232-016-9897-y	2016
	Gene-specific selective sweeps in bacteria and archaea caused by negative frequency-dependent selection.	Takeuchi N, Cordero OX, Koonin EV, Kaneko K.	BMC Biol	10.1186/s12915-015-0131-7	2015
	Exploring the optimal strategy to predict essential genes in microbes.	Deng J, Tan L, Lin X, Lu Y, Lu LJ.	Biomolecules	10.3390/biom2010001	2011
Metabolism	Use of limited proteolysis and mutagenesis to identify folding domains and sequence motifs critical for wax ester synthase/acyl coenzyme A:diacylglycerol acyltransferase activity.	Villa JA, Cabezas M, de la Cruz F, Moncalian G.	Appl Environ Microbiol	10.1128/aem.03433-13	2014
Phylogeny	The mosaic nature of intergenic 16S-23S rRNA spacer regions suggests rRNA operon copy number variation in Clostridium difficile strains.	Sadeghifard N, Gurtler V, Beer M, Seviour RJ.	Appl Environ Microbiol	10.1128/aem.01179-06	2006
Genetics	Expression of the resistance-nodulation-cell division pump AdeIJK in Acinetobacter baumannii is regulated by AdeN, a TetR-type regulator.	Rosenfeld N, Bouchier C, Courvalin P, Perichon B.	Antimicrob Agents Chemother	10.1128/aac.06422-11	2012
Metabolism	Hfq plays important roles in virulence and stress adaptation in Cronobacter sakazakii ATCC 29544.	Kim S, Hwang H, Kim KP, Yoon H, Kang DH, Ryu S.	Infect Immun	10.1128/iai.03161-14	2015
	Engineering a Streptomyces coelicolor biosynthesis pathway into Escherichia coli for high yield triglyceride production.	Comba S, Sabatini M, Menendez-Bravo S, Arabolaza A, Gramajo H.	Biotechnol Biofuels	10.1186/s13068-014-0172-0	2014
	Bacillus subtilis RecA interacts with and loads RadA/Sms to unwind recombination intermediates during natural chromosomal transformation.	Torres R, Serrano E, Alonso JC.	Nucleic Acids Res	10.1093/nar/gkz647	2019
Enzymology	Metabolic and bactericidal effects of targeted suppression of NadD and NadE enzymes in mycobacteria.	Rodionova IA, Schuster BM, Guinn KM, Sorci L, Scott DA, Li X, Kheterpal I, Shoen C, Cynamon M, Locher C, Rubin EJ, Osterman AL.	mBio	10.1128/mbio.00747-13	2014
Genetics	Genome-wide saturation mutagenesis of Burkholderia pseudomallei K96243 predicts essential genes and novel targets for antimicrobial development.	Moule MG, Hemsley CM, Seet Q, Guerra-Assuncao JA, Lim J, Sarkar-Tyson M, Clark TG, Tan PB, Titball RW, Cuccui J, Wren BW.	mBio	10.1128/mbio.00926-13	2014
	An oleaginous endophyte Bacillus subtilis HB1310 isolated from thin-shelled walnut and its utilization of cotton stalk hydrolysate for lipid production.	Zhang Q, Li Y, Xia L.	Biotechnol Biofuels	10.1186/s13068-014-0152-4	2014
	Joint Transcriptional Control of Virulence and Resistance to Antibiotic and Environmental Stress in Acinetobacter baumannii.	Gebhardt MJ, Gallagher LA, Jacobson RK, Usacheva EA, Peterson LR, Zurawski DV, Shuman HA.	mBio	10.1128/mbio.01660-15	2015
Pathogenicity	Defining gene-phenotype relationships in Acinetobacter baumannii through one-step chromosomal gene inactivation.	Tucker AT, Nowicki EM, Boll JM, Knauf GA, Burdis NC, Trent MS, Davies BW.	mBio	10.1128/mbio.01313-14	2014
Metabolism	Molecular phylogeny and intricate evolutionary history of the three isofunctional enzymes involved in the oxidation of protoporphyrinogen IX.	Kobayashi K, Masuda T, Tajima N, Wada H, Sato N.	Genome Biol Evol	10.1093/gbe/evu170	2014
Metabolism	Agrobacterium tumefaciens deploys a superfamily of type VI secretion DNase effectors as weapons for interbacterial competition in planta.	Ma LS, Hachani A, Lin JS, Filloux A, Lai EM.	Cell Host Microbe	10.1016/j.chom.2014.06.002	2014
	Site-Specific Recombination at XerC/D Sites Mediates the Formation and Resolution of Plasmid Co-integrates Carrying a bla_OXA-58- and TnaphA6-Resistance Module in Acinetobacter baumannii.	Cameranesi MM, Moran-Barrio J, Limansky AS, Repizo GD, Viale AM.	Front Microbiol	10.3389/fmicb.2018.00066	2018
Metabolism	Candida albicans CUG mistranslation is a mechanism to create cell surface variation.	Miranda I, Silva-Dias A, Rocha R, Teixeira-Santos R, Coelho C, Goncalves T, Santos MA, Santos MA, Pina-Vaz C, Solis NV, Filler SG, Rodrigues AG.	mBio	10.1128/mbio.00285-13	2013
Pathogenicity	Artificial Agrobacterium tumefaciens strains exhibit diverse mechanisms to repress Xanthomonas oryzae pv. oryzae-induced hypersensitive response and non-host resistance in Nicotiana benthamiana.	Li W, Cao JY, Xu YP, Cai XZ.	Mol Plant Pathol	10.1111/mpp.12411	2017
Metabolism	Diverse roles of TssA-like proteins in the assembly of bacterial type VI secretion systems.	Schneider JP, Nazarov S, Adaixo R, Liuzzo M, Ringel PD, Stahlberg H, Basler M.	EMBO J	10.15252/embj.2018100825	2019
	Bacillus subtilis MutS Modulates RecA-Mediated DNA Strand Exchange Between Divergent DNA Sequences.	Carrasco B, Serrano E, Martin-Gonzalez A, Moreno-Herrero F, Alonso JC.	Front Microbiol	10.3389/fmicb.2019.00237	2019
Enzymology	Production of a solvent, detergent, and thermotolerant lipase by a newly isolated Acinetobacter sp. in submerged and solid-state fermentations.	Khoramnia A, Ebrahimpour A, Beh BK, Lai OM.	J Biomed Biotechnol	10.1155/2011/702179	2011
	Towards the complete small RNome of Acinetobacter baumannii.	Weiss A, Broach WH, Lee MC, Shaw LN.	Microb Genom	10.1099/mgen.0.000045	2016
Metabolism	L-Hydroxyproline and d-Proline Catabolism in Sinorhizobium meliloti.	Chen S, White CE, diCenzo GC, Zhang Y, Stogios PJ, Savchenko A, Finan TM.	J Bacteriol	10.1128/jb.00961-15	2016
	The Amaryllidaceae alkaloids: biosynthesis and methods for enzyme discovery.	Kilgore MB, Kutchan TM.	Phytochem Rev	10.1007/s11101-015-9451-z	2016
	Metabolic Engineering of the Shikimate Pathway for Production of Aromatics and Derived Compounds-Present and Future Strain Construction Strategies.	Averesch NJH, Kromer JO.	Front Bioeng Biotechnol	10.3389/fbioe.2018.00032	2018
Metabolism	CrcZ and CrcX regulate carbon source utilization in Pseudomonas syringae pathovar tomato strain DC3000.	Filiatrault MJ, Stodghill PV, Wilson J, Butcher BG, Chen H, Myers CR, Cartinhour SW.	RNA Biol	10.4161/rna.23019	2013
Enzymology	A Novel Redox-Sensing Histidine Kinase That Controls Carbon Catabolite Repression in Azoarcus sp. CIB.	Valderrama JA, Gomez-Alvarez H, Martin-Moldes Z, Berbis MA, Canada FJ, Durante-Rodriguez G, Diaz E.	mBio	10.1128/mbio.00059-19	2019
Metabolism	In Salmonella enterica, the Gcn5-related acetyltransferase MddA (formerly YncA) acetylates methionine sulfoximine and methionine sulfone, blocking their toxic effects.	Hentchel KL, Escalante-Semerena JC.	J Bacteriol	10.1128/jb.02311-14	2015
Metabolism	O antigen is the receptor of Vibrio cholerae serogroup O1 El Tor typing phage VP4.	Xu J, Zhang J, Lu X, Liang W, Zhang L, Kan B.	J Bacteriol	10.1128/jb.01770-12	2013
Enzymology	New Shuttle Vectors for Gene Cloning and Expression in Multidrug-Resistant Acinetobacter Species.	Lucidi M, Runci F, Rampioni G, Frangipani E, Leoni L, Visca P.	Antimicrob Agents Chemother	10.1128/aac.02480-17	2018
	Acinetobacter baumannii Coordinates Urea Metabolism with Metal Import To Resist Host-Mediated Metal Limitation.	Juttukonda LJ, Chazin WJ, Skaar EP.	mBio	10.1128/mbio.01475-16	2016
Metabolism	Severe oxidative stress induces protein mistranslation through impairment of an aminoacyl-tRNA synthetase editing site.	Ling J, Soll D.	Proc Natl Acad Sci U S A	10.1073/pnas.1000315107	2010
	Compatible Solute Synthesis and Import by the Moderate Halophile Spiribacter salinus: Physiology and Genomics.	Leon MJ, Hoffmann T, Sanchez-Porro C, Heider J, Ventosa A, Bremer E.	Front Microbiol	10.3389/fmicb.2018.00108	2018
	The constancy of gene conservation across divergent bacterial orders.	Silander OK, Ackermann M.	BMC Res Notes	10.1186/1756-0500-2-2	2009
Metabolism	Pseudomonas aeruginosa 4-amino-4-deoxychorismate lyase: spatial conservation of an active site tyrosine and classification of two types of enzyme.	O'Rourke PE, Eadsforth TC, Fyfe PK, Shepherd SM, Hunter WN.	PLoS One	10.1371/journal.pone.0024158	2011
	Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.	Boisvert S, Laviolette F, Corbeil J.	J Comput Biol	10.1089/cmb.2009.0238	2010
	A statistical framework for improving genomic annotations of prokaryotic essential genes.	Deng J, Su S, Lin X, Hassett DJ, Lu LJ.	PLoS One	10.1371/journal.pone.0058178	2013
Enzymology	Evaluation of different methods for extracting extracellular DNA from the biofilm matrix.	Wu J, Xi C.	Appl Environ Microbiol	10.1128/aem.00400-09	2009
Metabolism	Type VI secretion system killing by commensal Neisseria is influenced by expression of type four pili.	Custodio R, Ford RM, Ellison CJ, Liu G, Mickute G, Tang CM, Exley RM.	Elife	10.7554/elife.63755	2021
	Low efficiency of homology-facilitated illegitimate recombination during conjugation in Escherichia coli.	Amarir-Bouhram J, Goin M, Petit MA.	PLoS One	10.1371/journal.pone.0028876	2011
	Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases.	Lipscomb GL, Stirrett K, Schut GJ, Yang F, Jenney FE, Scott RA, Adams MW, Adams MW, Westpheling J.	Appl Environ Microbiol	10.1128/aem.02624-10	2011
Metabolism	The mannitol utilization system of the marine bacterium Zobellia galactanivorans.	Groisillier A, Labourel A, Michel G, Tonon T.	Appl Environ Microbiol	10.1128/aem.02808-14	2015
	Two bifunctional enzymes from the marine protist Thraustochytrium roseum: biochemical characterization of wax ester synthase/acyl-CoA:diacylglycerol acyltransferase activity catalyzing wax ester and triacylglycerol synthesis.	Zhang N, Mao Z, Luo L, Wan X, Huang F, Gong Y.	Biotechnol Biofuels	10.1186/s13068-017-0869-y	2017
Metabolism	Optimization of fatty alcohol biosynthesis pathway for selectively enhanced production of C12/14 and C16/18 fatty alcohols in engineered Escherichia coli.	Zheng YN, Li LL, Liu Q, Yang JM, Wang XW, Liu W, Xu X, Liu H, Zhao G, Xian M.	Microb Cell Fact	10.1186/1475-2859-11-65	2012
Metabolism	Regulation of Gene Expression in Shewanella oneidensis MR-1 during Electron Acceptor Limitation and Bacterial Nanowire Formation.	Barchinger SE, Pirbadian S, Sambles C, Baker CS, Leung KM, Burroughs NJ, El-Naggar MY, Golbeck JH.	Appl Environ Microbiol	10.1128/aem.01615-16	2016
Pathogenicity	Assessment of Pseudomonas aeruginosa N5,N10-methylenetetrahydrofolate dehydrogenase-cyclohydrolase as a potential antibacterial drug target.	Eadsforth TC, Gardiner M, Maluf FV, McElroy S, James D, Frearson J, Gray D, Hunter WN.	PLoS One	10.1371/journal.pone.0035973	2012
Metabolism	Zinc and ATP binding of the hexameric AAA-ATPase PilF from Thermus thermophilus: role in complex stability, piliation, adhesion, twitching motility, and natural transformation.	Salzer R, Herzberg M, Nies DH, Joos F, Rathmann B, Thielmann Y, Averhoff B.	J Biol Chem	10.1074/jbc.m114.598656	2014
	How Aromatic Compounds Block DNA Binding of HcaR Catabolite Regulator.	Kim Y, Joachimiak G, Bigelow L, Babnigg G, Joachimiak A.	J Biol Chem	10.1074/jbc.m115.712067	2016
Transcriptome	CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing.	Angiuoli SV, Matalka M, Gussman A, Galens K, Vangala M, Riley DR, Arze C, White JR, White O, Fricke WF.	BMC Bioinformatics	10.1186/1471-2105-12-356	2011
	Deciphering the multifactorial nature of Acinetobacter baumannii pathogenicity.	Antunes LC, Imperi F, Carattoli A, Visca P.	PLoS One	10.1371/journal.pone.0022674	2011
	Red light activates the sigmaB-mediated general stress response of Bacillus subtilis via the energy branch of the upstream signaling cascade.	Avila-Perez M, van der Steen JB, Kort R, Hellingwerf KJ.	J Bacteriol	10.1128/jb.00826-09	2010
	The population and evolutionary dynamics of homologous gene recombination in bacterial populations.	Levin BR, Cornejo OE.	PLoS Genet	10.1371/journal.pgen.1000601	2009
Metabolism	Agroinfiltration reduces ABA levels and suppresses Pseudomonas syringae-elicited salicylic acid production in Nicotiana tabacum.	Rico A, Bennett MH, Forcat S, Huang WE, Preston GM.	PLoS One	10.1371/journal.pone.0008977	2010
Genetics	The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.	Touchon M, Cury J, Yoon EJ, Krizova L, Cerqueira GC, Murphy C, Feldgarden M, Wortman J, Clermont D, Lambert T, Grillot-Courvalin C, Nemec A, Courvalin P, Rocha EP.	Genome Biol Evol	10.1093/gbe/evu225	2014
Pathogenicity	The role of natural environments in the evolution of resistance traits in pathogenic bacteria.	Martinez JL.	Proc Biol Sci	10.1098/rspb.2009.0320	2009
Pathogenicity	Toward repurposing ciclopirox as an antibiotic against drug-resistant Acinetobacter baumannii, Escherichia coli, and Klebsiella pneumoniae.	Carlson-Banning KM, Chou A, Liu Z, Hamill RJ, Song Y, Zechiedrich L.	PLoS One	10.1371/journal.pone.0069646	2013
Enzymology	Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC.	Engelen S, Vallenet D, Medigue C, Danchin A.	BMC Genomics	10.1186/1471-2164-13-69	2012
Metabolism	MetaMerge: scaling up genome-scale metabolic reconstructions with application to Mycobacterium tuberculosis.	Chindelevitch L, Stanley S, Hung D, Regev A, Berger B.	Genome Biol	10.1186/gb-2012-13-1-r6	2012
Metabolism	Benzoate mediates repression of C(4)-dicarboxylate utilization in "Aromatoleum aromaticum" EbN1.	Trautwein K, Grundmann O, Wohlbrand L, Eberlein C, Boll M, Rabus R.	J Bacteriol	10.1128/jb.05072-11	2012
Metabolism	The path to next generation biofuels: successes and challenges in the era of synthetic biology.	Dellomonaco C, Fava F, Gonzalez R.	Microb Cell Fact	10.1186/1475-2859-9-3	2010
Metabolism	A major role of the RecFOR pathway in DNA double-strand-break repair through ESDSA in Deinococcus radiodurans.	Bentchikou E, Servant P, Coste G, Sommer S.	PLoS Genet	10.1371/journal.pgen.1000774	2010
Metabolism	The Francisella Type VI Secretion System.	Clemens DL, Lee BY, Horwitz MA.	Front Cell Infect Microbiol	10.3389/fcimb.2018.00121	2018
Metabolism	Establishment of cyanophycin biosynthesis in Pichia pastoris and optimization by use of engineered cyanophycin synthetases.	Steinle A, Witthoff S, Krause JP, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.01659-09	2010
	Genetic variability among ampC genes from acinetobacter genomic species 3.	Beceiro A, Perez A, Fernandez-Cuenca F, Martinez-Martinez L, Pascual A, Vila J, Rodriguez-Bano J, Cisneros JM, Pachon J, Bou G, Spanish Group for Nosocomial Infection (GEIH).	Antimicrob Agents Chemother	10.1128/aac.00485-08	2009
	Construction of signature-tagged mutant library in Mesorhizobium loti as a powerful tool for functional genomics.	Shimoda Y, Mitsui H, Kamimatsuse H, Minamisawa K, Nishiyama E, Ohtsubo Y, Nagata Y, Tsuda M, Shinpo S, Watanabe A, Kohara M, Yamada M, Nakamura Y, Tabata S, Sato S.	DNA Res	10.1093/dnares/dsn017	2008
Metabolism	Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes.	Popa O, Hazkani-Covo E, Landan G, Martin W, Dagan T.	Genome Res	10.1101/gr.115592.110	2011
	The second RNA chaperone, Hfq2, is also required for survival under stress and full virulence of Burkholderia cenocepacia J2315.	Ramos CG, Sousa SA, Grilo AM, Feliciano JR, Leitao JH.	J Bacteriol	10.1128/jb.01375-10	2011
Metabolism	Type VI secretion system contributes to Enterohemorrhagic Escherichia coli virulence by secreting catalase against host reactive oxygen species (ROS).	Wan B, Zhang Q, Ni J, Li S, Wen D, Li J, Xiao H, He P, Ou HY, Tao J, Teng Q, Lu J, Wu W, Yao YF.	PLoS Pathog	10.1371/journal.ppat.1006246	2017
	Prokaryote-eukaryote interactions identified by using Caenorhabditis elegans.	Peleg AY, Tampakakis E, Fuchs BB, Eliopoulos GM, Moellering RC, Mylonakis E.	Proc Natl Acad Sci U S A	10.1073/pnas.0805048105	2008
Genetics	Genome organization of epidemic Acinetobacter baumannii strains.	Di Nocera PP, Rocco F, Giannouli M, Triassi M, Zarrilli R.	BMC Microbiol	10.1186/1471-2180-11-224	2011
Metabolism	The Various Roles of Fatty Acids.	de Carvalho CCCR, Caramujo MJ.	Molecules	10.3390/molecules23102583	2018
	Acinetobacter baumannii biofilms: effects of physicochemical factors, virulence, antibiotic resistance determinants, gene regulation, and future antimicrobial treatments.	Eze EC, Chenia HY, El Zowalaty ME.	Infect Drug Resist	10.2147/idr.s169894	2018
Genetics	The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader.	Lykidis A, Perez-Pantoja D, Ledger T, Mavromatis K, Anderson IJ, Ivanova NN, Hooper SD, Lapidus A, Lucas S, Gonzalez B, Kyrpides NC.	PLoS One	10.1371/journal.pone.0009729	2010
Metabolism	The RNA chaperone Hfq is important for growth and stress tolerance in Francisella novicida.	Chambers JR, Bender KS.	PLoS One	10.1371/journal.pone.0019797	2011
	Quantitative proteomic analysis of host--pathogen interactions: a study of Acinetobacter baumannii responses to host airways.	Mendez JA, Mateos J, Beceiro A, Lopez M, Tomas M, Poza M, Bou G.	BMC Genomics	10.1186/s12864-015-1608-z	2015
Metabolism	Francisella tularensis IglG Belongs to a Novel Family of PAAR-Like T6SS Proteins and Harbors a Unique N-terminal Extension Required for Virulence.	Rigard M, Broms JE, Mosnier A, Hologne M, Martin A, Lindgren L, Punginelli C, Lays C, Walker O, Charbit A, Telouk P, Conlan W, Terradot L, Sjostedt A, Henry T.	PLoS Pathog	10.1371/journal.ppat.1005821	2016
	NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis.	Rusniok C, Vallenet D, Floquet S, Ewles H, Mouze-Soulama C, Brown D, Lajus A, Buchrieser C, Medigue C, Glaser P, Pelicic V.	Genome Biol	10.1186/gb-2009-10-10-r110	2009
	Episodic selection and the maintenance of competence and natural transformation in Bacillus subtilis.	Johnsen PJ, Dubnau D, Levin BR.	Genetics	10.1534/genetics.108.099523	2009
Metabolism	Biochemical characterization and physiological properties of Escherichia coli UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase.	Herve M, Boniface A, Gobec S, Blanot D, Mengin-Lecreulx D.	J Bacteriol	10.1128/jb.00087-07	2007
Metabolism	Targeting Mannitol Metabolism as an Alternative Antimicrobial Strategy Based on the Structure-Function Study of Mannitol-1-Phosphate Dehydrogenase in Staphylococcus aureus.	Nguyen T, Kim T, Ta HM, Yeo WS, Choi J, Mizar P, Lee SS, Bae T, Chaurasia AK, Kim KK.	mBio	10.1128/mbio.02660-18	2019
	Association of RNAs with Bacillus subtilis Hfq.	Dambach M, Irnov I, Winkler WC.	PLoS One	10.1371/journal.pone.0055156	2013
Enzymology	Structure and function of the first full-length murein peptide ligase (Mpl) cell wall recycling protein.	Das D, Herve M, Feuerhelm J, Farr CL, Chiu HJ, Elsliger MA, Knuth MW, Klock HE, Miller MD, Godzik A, Lesley SA, Deacon AM, Mengin-Lecreulx D, Wilson IA.	PLoS One	10.1371/journal.pone.0017624	2011
Metabolism	The transcription factor AlsR binds and regulates the promoter of the alsSD operon responsible for acetoin formation in Bacillus subtilis.	Fradrich C, March A, Fiege K, Hartmann A, Jahn D, Hartig E.	J Bacteriol	10.1128/jb.06425-11	2012
Genetics	A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii.	Chan AP, Sutton G, DePew J, Krishnakumar R, Choi Y, Huang XZ, Beck E, Harkins DM, Kim M, Lesho EP, Nikolich MP, Fouts DE.	Genome Biol	10.1186/s13059-015-0701-6	2015
	Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development.	Holder JW, Ulrich JC, DeBono AC, Godfrey PA, Desjardins CA, Zucker J, Zeng Q, Leach AL, Ghiviriga I, Dancel C, Abeel T, Gevers D, Kodira CD, Desany B, Affourtit JP, Birren BW, Sinskey AJ.	PLoS Genet	10.1371/journal.pgen.1002219	2011
Metabolism	The cell pole: the site of cross talk between the DNA uptake and genetic recombination machinery.	Kidane D, Ayora S, Sweasy JB, Graumann PL, Alonso JC.	Crit Rev Biochem Mol Biol	10.3109/10409238.2012.729562	2012
Phylogeny	Seven novel species of Acinetobacter isolated from activated sludge.	Carr EL, Kampfer P, Patel BKC, Gurtler V, Seviour RJ	Int J Syst Evol Microbiol	10.1099/ijs.0.02486-0	2003

References

#5636	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14961
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42142	; Curators of the CIP;
#58978	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50765
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#116768	Collection of Institut Pasteur ; Curators of the CIP; CIP 107474
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acinetobacter baylyi (DSM 14961, CIP 107474, CCUG 50765)

Name and taxonomic classification

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