Plantactinospora endophytica (DSM 45387, CCTCC AA 209047, JCM 31039)

Name: Plantactinospora endophytica (DSM 45387, CCTCC AA 209047, JCM 31039)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8047

Type strain

Culture col. no. DSM 45387 CCTCC AA 209047 JCM 31039 NBRC 110450 YIM 68255

NCBI tax ID(s) 673535

Special Collections DSMZ JCM Wink compendium Literature strains

History <- S.-K. Tang, Yunnan Univ., Kunming, Yunnan Inst. Microbiol. (YIM), China; YIM 68255 <- W.-Y. Zhu DSM 45387 <-- S.-K. Tang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 68255.

Links

Plantactinospora endophytica DSM 45387 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from healthy leaves of Camptotheca acuminata Decne.

spore-forming Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 396996

NBRC 110450,JCM 31039,DSM 45387

@ref 20215

Last LPSN update 2026-02-09 11:19:37

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Plantactinospora

Species Plantactinospora endophytica

Full scientific name Plantactinospora endophytica Zhu et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Confidence
30454	positive
125439	positive	99.6
125438	positive	90.142

Colony morphology

@ref	Colony color	Medium used
69391	Clay brown (8003)	suter with tyrosine
69391	Clay brown (8003)	suter without tyrosine
69391	Maize yellow (1006)	ISP 6
69391	Ochre brown (8001), maize yellow (1006)	ISP 7

Multicellular morphology

@ref	Complex name	Medium name
69391	Aerial mycelium	ISP 6
69391	Aerial mycelium	ISP 7
69391	Aerial mycelium	suter with tyrosine
69391	Aerial mycelium	suter without tyrosine

Pigmentation

@ref	Production	Name
30454
69391		melanin pigment
69391		soluble pigment

Multimedia

@ref:	69391
multimedia content:	DSM_45387_image3.jpeg
multimedia.multimedia content:	DSM_45387_image3.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69391
multimedia content:	DSM_45387_image4.jpeg
multimedia.multimedia content:	DSM_45387_image4.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	16486
multimedia content:	DSM_45387-1.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45387-1.jpg
caption:	Medium 554 28°C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16486	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
16486	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
16486	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
16486	CZAPEK PEPTONE AGAR (DSMZ Medium 83)	Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water
16486	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16486	positive	growth	28	mesophilic
30454	positive	growth	10-45
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30454	positive	optimum	7
30454	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30454	aerobe
125438	aerobe	91.531
125439	obligate aerobe	99.6

Spore formation

@ref	Spore formation	Confidence
30454
125438		92.182

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30454	NaCl	positive	growth	0-3 %
69391	NaCl	positive	growth	0 %

Observation

67770

Observationquinones: MK-10(H₆), MK-10(H₈), MK-9(H₆), MK-10(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69391	22599 ChEBI	arabinose	+	growth
30454	17057 ChEBI	cellobiose	+	carbon source
69391	62968 ChEBI	cellulose	+	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
30454	28757 ChEBI	fructose	+	carbon source
69391	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
30454	17234 ChEBI	glucose	+	carbon source
69391	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69391	17268 ChEBI	inositol	+	growth
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
30454	17306 ChEBI	maltose	+	carbon source
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69391	37684 ChEBI	mannose	+	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69391	16634 ChEBI	raffinose	+/-	growth
30454	26546 ChEBI	rhamnose	+	carbon source
69391	26546 ChEBI	rhamnose	+/-	growth
30454	17992 ChEBI	sucrose	+	carbon source
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69391	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
30454	18222 ChEBI	xylose	+	carbon source
69391	18222 ChEBI	xylose	-	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
30454	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69391	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69391	not determinedn.d.	-	-	+/-	+/-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
16486	healthy leaves of Camptotheca acuminata Decne	Camptotheca acuminata	Yunnan province	China	CHN	Asia
67770	Leaves of Camptotheca acuminata Decne.	Camptotheca acuminata	Yunnan Province, south-west China	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16486	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686291v1 assembly for Plantactinospora endophytica NBRC 110450	contig	GCA_016862915	673535.3	3001231842	673535	55.61
124043	ASM4267696v1 assembly for Plantactinospora endophytica JCM 31039	scaffold	GCA_042676965			673535	13.99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16486	Plantactinospora endophytica strain YIM 68255 16S ribosomal RNA gene, partial sequence	GQ494033	1515		673535

GC content

@ref	GC-content (mol%)	Method
16486	73	high performance liquid chromatography (HPLC)
30454	73

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Plantactinospora endophytica NBRC 110450
NCBI: GCA_016862915

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	81.70	no
125439	motility	BacteriaNetⓘ	no	86.30	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Plantactinospora endophytica strain NBRC 110450
PATRIC: 673535.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.14	yes
125438	anaerobic	anaerobicⓘ	no	93.90	yes
125438	spore-forming	spore-formingⓘ	yes	92.18	yes
125438	aerobic	aerobicⓘ	yes	91.53	yes
125438	thermophilic	thermophileⓘ	no	93.86	no
125438	flagellated	motile2+ⓘ	no	89.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Plantactinosporasoyae sp. nov., an endophytic actinomycete isolated from soybean root [Glycine max (L.) Merr].	Guo X, Guan X, Liu C, Jia F, Li J, Li J, Jin P, Li W, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001088	2016
Phylogeny	Plantactinospora sonchi sp. nov., an actinobacterium isolated from the leaves of common sowthistle (Sonchus oleraceus L.).	Ma Z, Liu C, Fan J, He H, Li C, Li J, Zhao S, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.000668	2015
Phylogeny	Plantactinospora veratri sp. nov., an actinomycete isolated from black false hellebore root (Veratrum nigrum L.).	Xing H, Liu C, Zhang Y, Zhao J, Li C, Liu H, Li L, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.000180	2015
Phylogeny	Plantactinospora endophytica sp. nov., an actinomycete isolated from Camptotheca acuminata Decne., reclassification of Actinaurispora siamensis as Plantactinospora siamensis comb. nov. and emended descriptions of the genus Plantactinospora and Plantactinospora mayteni.	Zhu WY, Zhao LX, Zhao GZ, Duan XW, Qin S, Li J, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.036459-0	2011

References

#16486	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45387
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26789	IJSEM 2435 2012 ( DOI 10.1099/ijs.0.036459-0 , PubMed 22140153 )
#30454	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26789
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69391	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Plantactinospora endophytica (DSM 45387, CCTCC AA 209047, JCM 31039)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016862915

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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