Name: Plantactinospora endophytica DSM 45387
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8047

Type strain:

Species: Plantactinospora endophytica

Culture col. no.: DSM 45387, CCTCC AA 209047, JCM 31039, NBRC 110450, YIM 68255

Strain history: DSM 45387 <-- S.-K. Tang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 68255.

NCBI tax ID(s): 673535 (species)

SI-ID 396996

DSM 45387

Section

Plantactinospora endophytica DSM 45387 is an aerobe, spore-forming, mesophilic bacterium that was isolated from healthy leaves of Camptotheca acuminata Decne.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Plantactinospora*
	Species	**Plantactinospora endophytica**
	Full Scientific Name (LPSN)	Plantactinospora endophytica Zhu et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30454]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %99.719

[Ref.: #30454]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.134

[Ref.: #69391]	Colony color	Clay brown (8003)
[Ref.: #69391]	Cultivation medium used	suter with tyrosine

[Ref.: #69391]	Colony color	Clay brown (8003)
[Ref.: #69391]	Cultivation medium used	suter without tyrosine

[Ref.: #69391]	Colony color	Maize yellow (1006)
[Ref.: #69391]	Cultivation medium used	ISP 6

[Ref.: #69391]	Colony color	Ochre brown (8001), maize yellow (1006)
[Ref.: #69391]	Cultivation medium used	ISP 7

[Ref.: #30454]	Pigment production	yes
[Ref.: #69391]	Pigment production	no
[Ref.: #69391]	Pigment name	Melanin
[Ref.: #69391]	Pigment production	no
[Ref.: #69391]	Pigment name	soluble pigment

[Ref.: #69391]	Multicellular complex forming ability	no
[Ref.: #69391]	Multicellular complex name	Aerial mycelium
[Ref.: #69391]	Medium Name (multicellularity)	ISP 6

[Ref.: #69391]	Multicellular complex forming ability	no
[Ref.: #69391]	Multicellular complex name	Aerial mycelium
[Ref.: #69391]	Medium Name (multicellularity)	ISP 7

[Ref.: #69391]	Multicellular complex forming ability	no
[Ref.: #69391]	Multicellular complex name	Aerial mycelium
[Ref.: #69391]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69391]	Multicellular complex forming ability	no
[Ref.: #69391]	Multicellular complex name	Aerial mycelium
[Ref.: #69391]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69391]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69391]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69391]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69391]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16486]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #16486]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #16486]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #16486]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16486]	growth	28 °C
[Ref.: #30454]	growth	10-45 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #16486]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30454]			optimum	7
[Ref.: #30454]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30454]

Oxygen tolerance

aerobe

[Ref.: #30454]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30454]		NaCl		growth	0-3	%
[Ref.: #69391]		NaCl		growth	0	%

[Ref.: #67770]

Observation

quinones: MK-10(H₆), MK-10(H₈), MK-9(H₆), MK-10(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69391]	arabinose ChEBI	+	growth
[Ref.: #30454]	cellobiose ChEBI	+	carbon source
[Ref.: #69391]	cellulose ChEBI	+	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30454]	fructose ChEBI	+	carbon source
[Ref.: #69391]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30454]	glucose ChEBI	+	carbon source
[Ref.: #69391]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69391]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30454]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69391]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69391]	raffinose ChEBI	+/-	growth
[Ref.: #30454]	rhamnose ChEBI	+	carbon source
[Ref.: #69391]	rhamnose ChEBI	+/-	growth
[Ref.: #30454]	sucrose ChEBI	+	carbon source
[Ref.: #69391]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30454]	xylose ChEBI	+	carbon source
[Ref.: #69391]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #30454]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69391]	3884	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69391]	6068	not determinedn.d.	-	-	+/-	+/-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16486]	Sample type/isolated from	healthy leaves of Camptotheca acuminata Decne
[Ref.: #16486]	Host species	Camptotheca acuminata
[Ref.: #16486]	Geographic location (country and/or sea, region)	Yunnan province
[Ref.: #16486]	Country	China
[Ref.: #16486]	Country ISO 3 Code	CHN
[Ref.: #16486]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Leaves of Camptotheca acuminata Decne.
[Ref.: #67770]	Host species	Camptotheca acuminata
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province, south-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16486]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16486]	Plantactinospora endophytica strain YIM 68255 16S ribosomal RNA gene, partial sequence	GQ494033	1515	ENA	673535 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Plantactinospora endophytica NBRC 110450	GCA_016862915	contig	GenBank	673535 tax ID	*
[Ref.: #66792]	Plantactinospora endophytica strain NBRC 110450	673535.3	wgs	PATRIC	673535 tax ID	*

[Ref.: #16486]	GC-content	73 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30454]	GC-content	73 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Plantactinospora endophytica strain NBRC 110450 PATRIC: 673535.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Plantactinospora endophytica strain NBRC 110450 PATRIC: 673535.3
[Ref.: #69480]	gram-positive	yes	89.689	yes
[Ref.: #69480]	anaerobic	no	99.036	yes
[Ref.: #69480]	halophile	no	94.709	yes
[Ref.: #69480]	spore-forming	yes	94.692	yes
[Ref.: #69480]	glucose-util	yes	87.751	no
[Ref.: #69480]	thermophile	no	96.913	yes
[Ref.: #69480]	flagellated	no	97.745	yes
[Ref.: #69480]	motile	no	92.466	yes
[Ref.: #69480]	aerobic	yes	94.977	yes
[Ref.: #69480]	glucose-ferment	no	92.473	no

Availability in culture collections External links

[Ref.: #16486]

Culture collection no.

DSM 45387, CCTCC AA 209047, JCM 31039, NBRC 110450, YIM 68255

[Ref.: #77475]

SI-ID 396996

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Plantactinosporasoyae sp. nov., an endophytic actinomycete isolated from soybean root [Glycine max (L.) Merr].	Guo X, Guan X, Liu C, Jia F, Li J, Li J, Jin P, Li W, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001088	2016	*
Phylogeny	Plantactinospora sonchi sp. nov., an actinobacterium isolated from the leaves of common sowthistle (Sonchus oleraceus L.).	Ma Z, Liu C, Fan J, He H, Li C, Li J, Zhao S, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.000668	2015	*
Phylogeny	Plantactinospora veratri sp. nov., an actinomycete isolated from black false hellebore root (Veratrum nigrum L.).	Xing H, Liu C, Zhang Y, Zhao J, Li C, Liu H, Li L, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.000180	2015	*
Phylogeny	Plantactinospora endophytica sp. nov., an actinomycete isolated from Camptotheca acuminata Decne., reclassification of Actinaurispora siamensis as Plantactinospora siamensis comb. nov. and emended descriptions of the genus Plantactinospora and Plantactinospora mayteni.	Zhu WY, Zhao LX, Zhao GZ, Duan XW, Qin S, Li J, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.036459-0	2011	*

References

#16486

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45387

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30454

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26789 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69391

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77475

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396996.1 )

#26789

IJSEM 2435 2012 ( DOI 10.1099/ijs.0.036459-0 , PubMed 22140153 )

* These data were automatically processed and therefore are not curated

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Plantactinospora endophytica strain NBRC 110450

Plantactinospora endophytica strain NBRC 110450

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