Catelliglobosispora koreensis LM042, LM 042 | Type strain | DSM 44566, JCM 10976, IMSNU 50729, CGMCC 4.5570, CIP 107020, NBRC 105861 | BacDiveID:8043

Strain identifier

BacDive ID: 8043

Type strain:

Species: Catelliglobosispora koreensis

Strain Designation: LM042, LM 042

Culture col. no.: DSM 44566, JCM 10976, IMSNU 50729, CGMCC 4.5570, CIP 107020, NBRC 105861

Strain history: CIP <- 2001, JCM <- S.O. Kang: strain LM 042

NCBI tax ID(s): 1121272 (strain), 129052 (species)

SI-ID 50681

DSM 44566, CIP 107020, JCM 10976

Special Collections

Section

Catelliglobosispora koreensis LM042 is a spore-forming bacterium that was isolated from soil of gold mine cave.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Catelliglobosispora*
	Species	**Catelliglobosispora koreensis**
	Full Scientific Name (LPSN)	Catelliglobosispora koreensis (Lee et al. 2000) Ara et al. 2008

Synonym

Catellatospora koreensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.82

[Ref.: #120472]	Cell shape	filament-shaped

[Ref.: #120472]	Motility	no

Multimedia content

Caption:

Medium 65 28°C

Intellectual property rights:

© Leibniz-Institut DSMZ

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

MEDIUM 375 - for Catellospora koreensis

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

[Ref.: #120472]

Culture medium

CIP Medium 375

[Ref.: #120472]

Culture medium growth

[Ref.: #120472]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #11762]			growth	28 °C
[Ref.: #40655]			growth	30 °C
[Ref.: #67770]			growth	28 °C
[Ref.: #120472]			growth	25-30 °C
[Ref.: #120472]		no	growth	10 °C
[Ref.: #120472]		no	growth	37 °C
[Ref.: #120472]		no	growth	41 °C
[Ref.: #120472]		no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #120472]		NaCl		growth	0	%
[Ref.: #120472]		NaCl	no	growth	2	%
[Ref.: #120472]		NaCl	no	growth	4	%
[Ref.: #120472]		NaCl	no	growth	6	%
[Ref.: #120472]		NaCl	no	growth	8	%
[Ref.: #120472]		NaCl	no	growth	10	%

Observation

quinones: MK-10(H₄), MK-10(H₆), MK-9(H₄)

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]		amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120472]		esculin ChEBI	+	hydrolysis
[Ref.: #68371]		galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120472]		hippurate ChEBI	-	hydrolysis
[Ref.: #68371]		inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120472]		nitrate ChEBI	+	reduction
[Ref.: #120472]		nitrite ChEBI	-	reduction
[Ref.: #68371]		Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		xylitol ChEBI	-	builds acid from	* from API 50CH acid
		Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120472]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #120472]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120472]		acetoin ChEBI	-
[Ref.: #120472]		glucose ChEBI		-

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120472]		alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]		alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]		alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120472]		beta-galactosidase	-	3.2.1.23
[Ref.: #68382]		beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]		beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]		beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120472]		catalase	+	1.11.1.6
[Ref.: #68382]		cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #120472]		gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #120472]		gelatinase	+
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]		lipase (C 14)	-		* from API zym
[Ref.: #120472]		lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120472]		ornithine decarboxylase	-	4.1.1.17
[Ref.: #120472]		oxidase	-
[Ref.: #120472]		phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]		trypsin	+	3.4.21.4	* from API zym
[Ref.: #120472]		tryptophan deaminase	+
[Ref.: #120472]		urease	-	3.5.1.5
[Ref.: #68382]		valine arylamidase	+		* from API zym
		Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #120472]	10801	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120472]	10003	-	+	+	+	-	+	+	-	+	-	+	+	-	-	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11762]	Sample type/isolated from	soil of gold mine cave
[Ref.: #11762]	Geographic location (country and/or sea, region)	Korea, Kongju
[Ref.: #11762]	Country	Republic of Korea
[Ref.: #11762]	Country ISO 3 Code	KOR
[Ref.: #11762]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil at a gold-mine cave
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kongju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #120472]	Sample type/isolated from	Environment, Soil at a gold-mine cave
[Ref.: #120472]	Geographic location (country and/or sea, region)	Kongju
[Ref.: #120472]	Country	Republic of Korea
[Ref.: #120472]	Country ISO 3 Code	KOR
[Ref.: #120472]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Global distribution of 16S sequence AF171700 (>99% sequence identity) for Catelliglobosispora koreensis subclade from Microbeatlas

Aquatic Samples	259
Soil Samples	3344
Animal Samples	212
Plant Samples	1311
Total Samples	5126

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11762]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120472]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11762]	Catellatospora koreensis 16S ribosomal RNA gene, partial sequence	AF171700	1510	GenBank ENA	1121272 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Catelliglobosispora koreensis DSM 44566	GCA_000379685	scaffold	GenBank ENA	1121272 tax ID
[Ref.: #66792]	Catelliglobosispora koreensis DSM 44566	1121272.3	wgs	PATRIC	1121272 tax ID	*
[Ref.: #66792]	Catelliglobosispora koreensis DSM 44566	2515154016	draft	JGI IMG/M	1121272 tax ID	*

[Ref.: #11762]	GC-content	70.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	64.4 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Catelliglobosispora koreensis DSM 44566 DSM 44566 NCBI: GCA_000379685.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	70	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Catelliglobosispora koreensis DSM 44566 PATRIC: 1121272.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.82	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.874	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	87.862	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.955	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.5	no

Availability in culture collections External links

Culture collection no.

DSM 44566, JCM 10976, IMSNU 50729, CGMCC 4.5570, CIP 107020, NBRC 105861

SI-ID 50681

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Allorhizocola rhizosphaerae gen. nov., sp. nov., a new member of Micromonosporaceae isolated from rhizosphere soil of the plant Calligonum mongolicum.	Sun Y, Jiang ZM, Zhao LL, Su J, Yu LY, Tian YQ, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003114	2018	*
Phylogeny	Transfer of Catellatospora koreensis Lee et al. 2000 as Catelliglobosispora koreensis gen. nov., comb. nov. and Catellatospora tsunoense Asano et al. 1989 as Hamadaea tsunoensis gen. nov., comb. nov., and emended description of the genus Catellatospora Asano and Kawamoto 1986 emend. Lee and Hah 2002.	Ara I, Bakir MA, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.65548-0	2008	*
Phylogeny	Catellatospora koreensis sp. nov., a novel actinomycete isolated from a gold-mine cave.	Lee SD, Kang SO, Hah YC	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1103	2000	*

References

#11762

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44566

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40655 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77471

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50681.1 )

#120472 Collection of Institut Pasteur ; Curators of the CIP; CIP 107020
* These data were automatically processed and therefore are not curated

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