Name: Micromonospora trujilloniae 234402
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8034

Type strain:

Species: Micromonospora trujilloniae

Strain Designation: 234402

Culture col. no.: DSM 45674, CCTCC AA 2011018, JCM 31041, NBRC 110790

Strain history: DSM 45674 <-- Q. Xie; Inst. of Trop. Biosci. & Biotechnol., China; 234402.

NCBI tax ID(s): 879618 (species)

SI-ID 403745

DSM 45674

Section

Micromonospora trujilloniae 234402 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from mangrove soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora trujilloniae**
	Full Scientific Name (LPSN)	Micromonospora trujilloniae Nouioui et al. 2018

Synonym

Verrucosispora wenchangensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Multimedia content

[Ref.: #18037]

Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18037]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #18037]

Culture medium composition

expand / minimize

[Ref.: #18037]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #18037]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18037]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #18037]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆), MK-9(H₈)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18037]	Sample type/isolated from	mangrove soil
[Ref.: #18037]	Geographic location (country and/or sea, region)	Hainan, Wenchang (N19°36.506', E110°47.746')
[Ref.: #18037]	Country	China
[Ref.: #18037]	Country ISO 3 Code	CHN
[Ref.: #18037]	Continent	Asia
[Ref.: #18037]	Geographic location	19.6084°/110.7960°

[Ref.: #67770]	Sample type/isolated from	Mangrove soil in Wenchang
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hainan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ123435 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	47
Soil Samples	308
Animal Samples	71
Plant Samples	23
Total Samples	449

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18037]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18037]	Verrucosispora wenchangensis strain 234402 16S ribosomal RNA gene, partial sequence	HQ123435	1475	ENA	879618 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Micromonospora andamanensis NBRC 110790	GCA_016863595	contig	GenBank	1287068 tax ID	*
[Ref.: #66792]	Micromonospora trujilloniae strain NBRC 110790	879618.3	wgs	PATRIC	879618 tax ID	*

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GC-content

69.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora trujilloniae strain NBRC 110790 PATRIC: 879618.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora trujilloniae strain NBRC 110790 PATRIC: 879618.3
[Ref.: #69480]	motile	no	94.795	no
[Ref.: #69480]	flagellated	no	97.576	no
[Ref.: #69480]	gram-positive	yes	90.828	no
[Ref.: #69480]	anaerobic	no	99.402	no
[Ref.: #69480]	halophile	no	93.298	no
[Ref.: #69480]	spore-forming	yes	94.611	no
[Ref.: #69480]	thermophile	no	98.807	yes
[Ref.: #69480]	glucose-util	yes	87.691	no
[Ref.: #69480]	aerobic	yes	94.344	no
[Ref.: #69480]	glucose-ferment	no	91.349	no

Availability in culture collections External links

[Ref.: #18037]

Culture collection no.

DSM 45674, CCTCC AA 2011018, JCM 31041, NBRC 110790

[Ref.: #77464]

SI-ID 403745

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Verrucosispora wenchangensis sp. nov., isolated from mangrove soil.	Xie QY, Lin HP, Li L, Brown R, Goodfellow M, Deng Z, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-012-9707-1	2012	*

References

#18037

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45674

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77464

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403745.1 )

* These data were automatically processed and therefore are not curated

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Micromonospora trujilloniae strain NBRC 110790

Micromonospora trujilloniae strain NBRC 110790

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