Micromonospora qiuiae (DSM 45781, CGMCC 4.5826, NBRC 106684)

Name: Micromonospora qiuiae (DSM 45781, CGMCC 4.5826, NBRC 106684)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8033

Type strain

Strain Designation RtIII47

Culture col. no. DSM 45781 CGMCC 4.5826 NBRC 106684 RtIII47 BCC 51292 1 more

NCBI tax ID(s) 502268

Special Collections DSMZ JCM Wink compendium Literature strains

History DSMZ <- J. Nakagawa, NBRC; NBRC 106684 JCM <-- CGMCC 4.5826 <-- L. Xi et al. RtIII47.

Links

Micromonospora qiuiae RtIII47 is an aerobe, spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from mangrove soil.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398955

JCM 19682,NBRC 106684,DSM 45781

@ref 20215

Last LPSN update 2026-05-29 08:26:47

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora qiuiae

Full scientific name Micromonospora qiuiae (Xi et al. 2012) Nouioui et al. 2018

Synonyms (1)

Verrucosispora qiuiae

Morphology

Cell morphology

@ref	Confidence	Gram stain
30340		positive
125438	90.5
125439	96.128
125439	99.731	positive

Colony morphology

@ref	Colony color	Medium used
69435	Daffodil yellow (1007)	ISP 2
69435	Maize yellow (1006), signal orange (2010)	suter with tyrosine
69435	Maize yellow (1006), signal orange (2010)	suter without tyrosine
69435	Melon yellow (1028)	ISP 4
69435	Yellow orange (2000)	ISP 3
69435	Yellow orange (2000)	ISP 5
69435	Yellow orange (2000)	ISP 6
69435	Yellow orange (2000)	ISP 7

Multicellular morphology

@ref	Complex name	Medium name
69435	Aerial mycelium	ISP 2
69435	Aerial mycelium	ISP 3
69435	Aerial mycelium	ISP 4
69435	Aerial mycelium	ISP 5
69435	Aerial mycelium	ISP 6
69435	Aerial mycelium	ISP 7
69435	Aerial mycelium	suter with tyrosine
69435	Aerial mycelium	suter without tyrosine

Pigmentation

@ref	Production	Color	Name
30340
69435		Sand yellow (1002)	soluble pigment

Multimedia

@ref:	18199
multimedia content:	DSM_45781.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45781.jpg
caption:	Medium 553 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	69435
multimedia content:	DSM_45781_image3.jpeg
multimedia.multimedia content:	DSM_45781_image3.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69435
multimedia content:	DSM_45781_image4.jpeg
multimedia.multimedia content:	DSM_45781_image4.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	18199
multimedia content:	DSM_45781-1.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45781-1.jpg
caption:	Medium 554 28°C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
18199	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
18199	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
18199	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
18199	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18199	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30340	aerobe
125438	aerobe	90.117
125439	obligate aerobe	99.47

Spore formation

@ref	Spore formation	Confidence
30340
125439		92.781
125438		91.981

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30340	NaCl	positive	growth	0-10 %
30340	NaCl	positive	optimum	2.50 %
69435	NaCl	positive	growth	0-2.5 %

Observation

67770

Observationquinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30340	22599 ChEBI	arabinose	+	carbon source
69435	22599 ChEBI	arabinose	+/-	growth
69435	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
30340	28757 ChEBI	fructose	+	carbon source
69435	28757 ChEBI	fructose	+/-	growth
30340	28260 ChEBI	galactose	+	carbon source
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
30340	17234 ChEBI	glucose	+	carbon source
69435	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
30340	29864 ChEBI	mannitol	+	carbon source
69435	37684 ChEBI	mannose	-	growth
30340	17268 ChEBI	myo-inositol	+	carbon source
69435	17268 ChEBI	myo-inositol	-	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69435	16634 ChEBI	raffinose	-	growth
30340	26546 ChEBI	rhamnose	+	carbon source
69435	26546 ChEBI	rhamnose	+/-	growth
30340	33942 ChEBI	ribose	+	carbon source
30340	17992 ChEBI	sucrose	+	carbon source
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69435	17992 ChEBI	sucrose	+/-	growth
30340	27082 ChEBI	trehalose	+	carbon source
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
30340	18222 ChEBI	xylose	+	carbon source
69435	18222 ChEBI	xylose	+/-	growth

Enzymes

@ref	Value	Activity	Ec
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69435	-	+/-	-	+	-	-	+	-	+	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69435	not determinedn.d.	+	+/-	+	-	+	+/-	-	+	+	+/-	+	-	-	-	+	+	+/-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18199	mangrove soil	Hainan Province, Sanya	China	CHN	Asia
67770	Sediment from a mangrove swamp in Sanya	Hainan Province	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18199	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686355v1 assembly for Micromonospora qiuiae NBRC 106684	contig	GCA_016863555	502268.3	2996228458	502268	30.18

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18199	Verrucosispora qiuiae strain RtIII47 16S ribosomal RNA gene, partial sequence	EU427445	1457		502268

GC content

@ref	GC-content (mol%)	Method
18199	72.0
30340	72
67770	72	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1686355v1 assembly for Micromonospora qiuiae NBRC 106684
BV-BRC: 502268.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.47	no
125439	gram_stain	BacteriaNetⓘ	positive	99.73	no
125439	motility	BacteriaNetⓘ	no	96.13	no
125439	spore_formation	BacteriaNetⓘ	yes	92.78	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora qiuiae strain NBRC 106684
PATRIC: 502268.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.71	no
125438	anaerobic	anaerobicⓘ	no	93.08	no
125438	spore-forming	spore-formingⓘ	yes	91.98	yes
125438	aerobic	aerobicⓘ	yes	90.12	no
125438	thermophilic	thermophileⓘ	no	92.62	yes
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Verrucosispora sonchi sp. nov., a novel endophytic actinobacterium isolated from the leaves of common sowthistle (Sonchus oleraceus L.).	Ma Z, Zhao S, Cao T, Liu C, Huang Y, Gao Y, Yan K, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001537	2016
Phylogeny	Verrucosispora andamanensis sp. nov., isolated from a marine sponge.	Supong K, Suriyachadkun C, Suwanborirux K, Pittayakhajonwut P, Thawai C	Int J Syst Evol Microbiol	10.1099/ijs.0.050906-0	2013
Phylogeny	Description of Verrucosispora qiuiae sp. nov., isolated from mangrove swamp sediment, and emended description of the genus Verrucosispora.	Xi L, Zhang L, Ruan J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.033787-0	2011

References

#18199	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45781
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26681	IJSEM 1564 2012 ( DOI 10.1099/ijs.0.033787-0 , PubMed 21873512 )
#30340	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26681
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69435	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora qiuiae (DSM 45781, CGMCC 4.5826, NBRC 106684)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016863555

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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