Micromonospora maris (DSM 45365, JCM 31040, NBRC 109089)

Name: Micromonospora maris (DSM 45365, JCM 31040, NBRC 109089)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8032

Type strain

Strain Designation AB-18-032

Culture col. no. DSM 45365 JCM 31040 NBRC 109089 NRRL B-24793 AB-18-032 1 more

NCBI tax ID(s) 1003110

Special Collections DSMZ JCM

History DSMZ <- H.-P. Fiedler, Univ. Tübingen; AB-18-032 <- M. Goodfellow <- A. T. Bull JCM <-- DSM 45365 <-- H.-P. Fiedler; Univ. Tübingen, Germany; AB-18-032 <-- M. Goodfellow; Newcastle Univ., UK <-- A. T. Bull.

Links

Micromonospora maris AB-18-032 is a bacterium that was isolated from deep-sea sediment.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400183

JCM 31040,NBRC 109089,DSM 45365

@ref 20215

Last LPSN update 2026-05-29 08:26:47

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora maris

Full scientific name Micromonospora maris (Goodfellow et al. 2012) Nouioui et al. 2018

Synonyms (1)

Verrucosispora maris

Morphology

Cell morphology

@ref	Confidence	Gram stain
125439	96.488
125439	99.821	positive
125438	93.211	positive

Multimedia

@ref:	16364
multimedia content:	DSM_45365.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45365.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16364	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
16364	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
16364	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16364	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.121
125439	obligate aerobe	99.714

Spore formation

@ref	Spore formation	Confidence
125439		93.298
125438		92.724

Compound production

@ref	Compound
16364	abyssomicins
16364	proximicin A

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

Metabolite production

@ref	Metabolite	Production
67770	abyssomicin B
67770	abyssomicin C
67770	abyssomicin D
67770	abyssomicin G
67770	abyssomicin H
67770	atrop-abyssomicin C
67770	proximicin A

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16364	deep-sea sediment	Sea of Japan (-289m)	Japan	JPN	Asia
67770	Sediment from the Sea of Japan at a depth of 289 m

Taxonmaps

69479

Global distribution of 16S sequence AY528866 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	47
Soil Samples	308
Animal Samples	71
Plant Samples	23
Total Samples	449

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16364	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM20415v1 assembly for Micromonospora maris AB-18-032	complete	GCA_000204155	263358.5	650716103	263358	95.36
124043	ASM150731v1 assembly for Micromonospora maris NRRL B-24793	contig	GCA_001507315	1003110.4	2772190706	1003110	74.38

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16364	Verrucosispora maris AB-18-032 16S ribosomal RNA gene, partial sequence	AY528866	1440		263358

GC content

@ref	GC-content (mol%)	Method
16364	70.9	sequence analysis
16364	69.5	fluorimetric
67770	70.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM20415v1 assembly for Micromonospora maris AB-18-032
NCBI: GCA_000204155

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.71	no
125439	gram_stain	BacteriaNetⓘ	positive	99.82	no
125439	motility	BacteriaNetⓘ	no	96.49	no
125439	spore_formation	BacteriaNetⓘ	yes	93.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora maris AB-18-032 AB-18-032
NCBI: GCA_000204155.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.21	no
125438	anaerobic	anaerobicⓘ	no	93.30	no
125438	aerobic	aerobicⓘ	yes	90.12	no
125438	spore-forming	spore-formingⓘ	yes	92.72	no
125438	thermophilic	thermophileⓘ	no	92.91	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Metabolism	Abyssomicins-A 20-Year Retrospective View.	Fiedler HP	Mar Drugs	10.3390/md19060299	2021
Genetics	Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032.	Roh H, Uguru GC, Ko HJ, Kim S, Kim BY, Goodfellow M, Bull AT, Kim KH, Bibb MJ, Choi IG, Stach JE	J Bacteriol	10.1128/JB.05041-11	2011
Phylogeny	Proximicin A, B and C, novel aminofuran antibiotic and anticancer compounds isolated from marine strains of the actinomycete Verrucosispora.	Fiedler HP, Bruntner C, Riedlinger J, Bull AT, Knutsen G, Goodfellow M, Jones A, Maldonado L, Pathom-aree W, Beil W, Schneider K, Keller S, Sussmuth RD	J Antibiot (Tokyo)	10.1038/ja.2008.125	2008
Phylogeny	Micromonospora craniellae sp. nov., isolated from a marine sponge, and reclassification of Jishengella endophytica as Micromonospora endophytica comb. nov.	Li L, Zhu HR, Xu QH, Lin HW, Lu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003209	2019
Phylogeny	Verrucosispora andamanensis sp. nov., isolated from a marine sponge.	Supong K, Suriyachadkun C, Suwanborirux K, Pittayakhajonwut P, Thawai C	Int J Syst Evol Microbiol	10.1099/ijs.0.050906-0	2013
Phylogeny	Verrucosispora fiedleri sp. nov., an actinomycete isolated from a fjord sediment which synthesizes proximicins.	Goodfellow M, Brown R, Ahmed L, Pathom-Aree W, Bull AT, Jones AL, Stach JE, Zucchi TD, Zhang L, Wang J	Antonie Van Leeuwenhoek	10.1007/s10482-012-9831-y	2012
Phylogeny	Verrucosispora maris sp. nov., a novel deep-sea actinomycete isolated from a marine sediment which produces abyssomicins.	Goodfellow M, Stach JE, Brown R, Bonda AN, Jones AL, Mexson J, Fiedler HP, Zucchi TD, Bull AT	Antonie Van Leeuwenhoek	10.1007/s10482-011-9651-5	2011

References

#16364	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45365
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora maris (DSM 45365, JCM 31040, NBRC 109089)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Observation

Metabolite production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000204155

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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