Name: Micromonospora maris AB-18-032
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8032

Type strain:

Species: Micromonospora maris

Strain Designation: AB-18-032

Culture col. no.: DSM 45365, DSM 15899, JCM 31040, NBRC 109089, NRRL B-24793

Strain history: DSM 45365 <-- H.-P. Fiedler; Univ. Tübingen, Germany; AB-18-032 <-- M. Goodfellow; Newcastle Univ., UK <-- A. T. Bull.

NCBI tax ID(s): 1003110 (species)

SI-ID 400183

DSM 45365

Section

Micromonospora maris AB-18-032 is a mesophilic bacterium that was isolated from deep-sea sediment.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora maris**
	Full Scientific Name (LPSN)	Micromonospora maris (Goodfellow et al. 2012) Nouioui et al. 2018

Synonym

Verrucosispora maris

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16364]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #16364]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16364]	Name of produced compound	abyssomicins
[Ref.: #16364]	Name of produced compound	proximicin A

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

	Metabolite	Production
[Ref.: #67770]	abyssomicin B	yes
[Ref.: #67770]	abyssomicin C	yes
[Ref.: #67770]	abyssomicin D	yes
[Ref.: #67770]	abyssomicin G	yes
[Ref.: #67770]	abyssomicin H	yes
[Ref.: #67770]	atrop-abyssomicin C	yes
[Ref.: #67770]	proximicin A	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16364]	Sample type/isolated from	deep-sea sediment
[Ref.: #16364]	Geographic location (country and/or sea, region)	Sea of Japan (-289m)
[Ref.: #16364]	Country	Japan
[Ref.: #16364]	Country ISO 3 Code	JPN
[Ref.: #16364]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment from the Sea of Japan at a depth of 289 m
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

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Global distribution of 16S sequence AY528866 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	47
Soil Samples	308
Animal Samples	71
Plant Samples	23
Total Samples	449

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16364]	Verrucosispora maris AB-18-032 16S ribosomal RNA gene, partial sequence	AY528866	1440	ENA	263358 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Micromonospora maris AB-18-032	GCA_000204155	complete	GenBank	263358 tax ID	*

[Ref.: #16364]	GC-content	70.9 mol%	sequence analysis
[Ref.: #16364]	GC-content	69.5 mol%	fluorimetric
[Ref.: #67770]	GC-content	70.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora maris AB-18-032 AB-18-032 NCBI: GCA_000204155.1
[Ref.: #69480]	motile	no	93.844	no
[Ref.: #69480]	flagellated	no	97.3	no
[Ref.: #69480]	gram-positive	yes	90.516	no
[Ref.: #69480]	anaerobic	no	99.05	no
[Ref.: #69480]	aerobic	yes	92.545	no
[Ref.: #69480]	halophile	no	94.226	no
[Ref.: #69480]	spore-forming	yes	95.976	no
[Ref.: #69480]	glucose-util	yes	88.31	no
[Ref.: #69480]	thermophile	no	98.541	no
[Ref.: #69480]	glucose-ferment	no	91.211	no

Availability in culture collections External links

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Culture collection no.

DSM 45365, DSM 15899, JCM 31040, NBRC 109089, NRRL B-24793

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SI-ID 400183

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Abyssomicins-A 20-Year Retrospective View.	Fiedler HP	Mar Drugs	10.3390/md19060299	2021	*
Phylogeny	Micromonospora craniellae sp. nov., isolated from a marine sponge, and reclassification of Jishengella endophytica as Micromonospora endophytica comb. nov.	Li L, Zhu HR, Xu QH, Lin HW, Lu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003209	2019	*
Phylogeny	Verrucosispora andamanensis sp. nov., isolated from a marine sponge.	Supong K, Suriyachadkun C, Suwanborirux K, Pittayakhajonwut P, Thawai C	Int J Syst Evol Microbiol	10.1099/ijs.0.050906-0	2013	*
Phylogeny	Verrucosispora fiedleri sp. nov., an actinomycete isolated from a fjord sediment which synthesizes proximicins.	Goodfellow M, Brown R, Ahmed L, Pathom-Aree W, Bull AT, Jones AL, Stach JE, Zucchi TD, Zhang L, Wang J	Antonie Van Leeuwenhoek	10.1007/s10482-012-9831-y	2012	*
Phylogeny	Verrucosispora maris sp. nov., a novel deep-sea actinomycete isolated from a marine sediment which produces abyssomicins.	Goodfellow M, Stach JE, Brown R, Bonda AN, Jones AL, Mexson J, Fiedler HP, Zucchi TD, Bull AT	Antonie Van Leeuwenhoek	10.1007/s10482-011-9651-5	2011	*
Genetics	Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032.	Roh H, Uguru GC, Ko HJ, Kim S, Kim BY, Goodfellow M, Bull AT, Kim KH, Bibb MJ, Choi IG, Stach JE	J Bacteriol	10.1128/JB.05041-11	2011	*
Phylogeny	Proximicin A, B and C, novel aminofuran antibiotic and anticancer compounds isolated from marine strains of the actinomycete Verrucosispora.	Fiedler HP, Bruntner C, Riedlinger J, Bull AT, Knutsen G, Goodfellow M, Jones A, Maldonado L, Pathom-aree W, Beil W, Schneider K, Keller S, Sussmuth RD	J Antibiot (Tokyo)	10.1038/ja.2008.125	2008	*

References

#16364

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45365

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77462

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400183.1 )

* These data were automatically processed and therefore are not curated

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Micromonospora maris AB-18-032 AB-18-032

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