Name: Pilimelia anulata DSM 43039
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8023

Type strain:

Species: Pilimelia anulata

Culture col. no.: DSM 43039, ATCC 25604, KCC A-0090, JCM 3090, BCRC 13717, CGMCC 4.5563, IFO 15533, IFO 16051, IMET 9269, KCTC 9652, NBRC 15533, NBRC 16051, NCIMB 12892

Strain history: KCC A-0090 <-- W. K. Hanton.

NCBI tax ID(s): 53371 (species)

SI-ID 38609

ATCC 25604, DSM 43039, JCM 3090, CCRC 13717, IFO 15533, IFO 16051, IMET 9269, NCIMB 12892, KCTC 9652, NBRC 15533, NBRC 16051, BCRC 13717

Section

Pilimelia anulata DSM 43039 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Pilimelia*
	Species	**Pilimelia anulata**
	Full Scientific Name (LPSN)	Pilimelia anulata Kane 1966 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %97.368

[Ref.: #19930]	Colony color	Corn yellow (1006)
[Ref.: #19930]	Incubation period	10-14 days
[Ref.: #19930]	Cultivation medium used	ISP 2

[Ref.: #19930]	Colony color	Corn yellow (1006)
[Ref.: #19930]	Incubation period	10-14 days
[Ref.: #19930]	Cultivation medium used	ISP 3

[Ref.: #19930]	Colony color	Lemon yellow (1012)
[Ref.: #19930]	Incubation period	10-14 days
[Ref.: #19930]	Cultivation medium used	ISP 4

[Ref.: #19930]	Colony color	Lemon yellow (1012)
[Ref.: #19930]	Incubation period	10-14 days
[Ref.: #19930]	Cultivation medium used	ISP 5

[Ref.: #19930]	Colony color	Lemon yellow (1012)
[Ref.: #19930]	Incubation period	10-14 days
[Ref.: #19930]	Cultivation medium used	ISP 6

[Ref.: #19930]	Colony color	Corn yellow (1006)
[Ref.: #19930]	Incubation period	10-14 days
[Ref.: #19930]	Cultivation medium used	ISP 7

[Ref.: #19930]	Multicellular complex forming ability	no
[Ref.: #19930]	Medium Name (multicellularity)	ISP 2

[Ref.: #19930]	Multicellular complex forming ability	no
[Ref.: #19930]	Medium Name (multicellularity)	ISP 3

[Ref.: #19930]	Multicellular complex forming ability	no
[Ref.: #19930]	Medium Name (multicellularity)	ISP 4

[Ref.: #19930]	Multicellular complex forming ability	no
[Ref.: #19930]	Medium Name (multicellularity)	ISP 5

[Ref.: #19930]	Multicellular complex forming ability	no
[Ref.: #19930]	Medium Name (multicellularity)	ISP 6

[Ref.: #19930]	Multicellular complex forming ability	no
[Ref.: #19930]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10709]

Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

[Ref.: #10709]

Culture medium growth

[Ref.: #10709]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10709]

Culture medium composition

expand / minimize

[Ref.: #19930]

Culture medium

ISP 2

[Ref.: #19930]

Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #19930]

Culture medium

ISP 3

[Ref.: #19930]

Culture medium growth

[Ref.: #19930]

Culture medium composition

expand / minimize

[Ref.: #19930]

Culture medium

ISP 4

[Ref.: #19930]

Culture medium growth

[Ref.: #19930]

Culture medium composition

expand / minimize

[Ref.: #19930]

Culture medium

ISP 5

[Ref.: #19930]

Culture medium growth

[Ref.: #19930]

Culture medium composition

expand / minimize

[Ref.: #19930]

Culture medium

ISP 6

[Ref.: #19930]

Culture medium growth

[Ref.: #19930]

Culture medium composition

expand / minimize

[Ref.: #19930]

Culture medium

ISP 7

[Ref.: #19930]

Culture medium growth

[Ref.: #19930]

Culture medium composition

expand / minimize

[Ref.: #10709]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10709]

Culture medium growth

[Ref.: #10709]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10709]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10709]	growth	28 °C
[Ref.: #19930]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #10709]	Temperature range	mesophilic
[Ref.: #19930]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19930]	Spore description	Formation of sporangia, spore surface smooth
[Ref.: #19930]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %98.985

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19930]		NaCl		maximum	2.5	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10709]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	St. Joseph Co., IN
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10709]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19930]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	P.anulata 16S rRNA gene	X93189	1468	ENA	53371 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pilimelia anulata JCM 3090	GCA_014647895	contig	GenBank	53371 tax ID	*
[Ref.: #66792]	Pilimelia anulata strain JCM 3090	53371.4	wgs	PATRIC	53371 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pilimelia anulata strain JCM 3090 PATRIC: 53371.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pilimelia anulata strain JCM 3090 PATRIC: 53371.4
[Ref.: #69480]	gram-positive	yes	86.346	no
[Ref.: #69480]	anaerobic	no	99.173	no
[Ref.: #69480]	halophile	no	93.762	no
[Ref.: #69480]	spore-forming	yes	80.323	no
[Ref.: #69480]	glucose-util	yes	85.332	no
[Ref.: #69480]	thermophile	no	94.074	no
[Ref.: #69480]	motile	yes	52.445	no
[Ref.: #69480]	flagellated	no	91.696	no
[Ref.: #69480]	aerobic	yes	94.636	no
[Ref.: #69480]	glucose-ferment	no	93.019	no

Availability in culture collections External links

[Ref.: #10709]

Culture collection no.

DSM 43039, ATCC 25604, KCC A-0090, JCM 3090, BCRC 13717, CGMCC 4.5563, IFO 15533, IFO 16051, IMET 9269, KCTC 9652, NBRC 15533, NBRC 16051, NCIMB 12892

[Ref.: #77453]

SI-ID 38609

References

#10709

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43039

#19930

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77453

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38609.1 )

* These data were automatically processed and therefore are not curated

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Pilimelia anulata strain JCM 3090

Pilimelia anulata strain JCM 3090

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